BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029063
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
           GN=Rpp25l PE=2 SV=1
          Length = 163

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD S  GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136


>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
           GN=RPP25L PE=1 SV=1
          Length = 163

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GLHQ T +      D W P   + GL PL   RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD +  GYQPP
Sbjct: 121 LSRDPLDPNECGYQPP 136


>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
           GN=RPP25L PE=2 SV=1
          Length = 163

 Score = 60.5 bits (145), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 2   GRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL--EEGLLPLETTRHVSMITIT 59
           GRA  K V  AE++KRR+ GL+Q T +      D W P   + GL PL    HV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 60  LSKKDLDTSSTGYQPP 75
           LS+  LD +  GYQPP
Sbjct: 121 LSRDPLDPNEYGYQPP 136


>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
           SV=1
          Length = 199

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 10/87 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----EEGLLP------LETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L     +G  P      L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPPLP 77
           ++V  + I LSK  LD    GYQPP P
Sbjct: 130 KNVPGLAILLSKDALDPRQPGYQPPNP 156


>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
           PE=2 SV=1
          Length = 199

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----------EEGLLPLETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L           +    L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPP 75
           ++V  + I LSK  LD    GYQPP
Sbjct: 130 KNVPSLAILLSKDALDPRQLGYQPP 154


>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
           SV=1
          Length = 199

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 1   MGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPL----------EEGLLPLETT 50
            GRA  KTV  AE++KRR+AGLHQ T +    + ++W+ L           +    L   
Sbjct: 70  CGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVL 129

Query: 51  RHVSMITITLSKKDLDTSSTGYQPP 75
           ++V  + I LSK  LD    GYQPP
Sbjct: 130 KNVPSLAILLSKDALDPRQLGYQPP 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.142    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,825,562
Number of Sequences: 539616
Number of extensions: 5615508
Number of successful extensions: 51684
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 759
Number of HSP's that attempted gapping in prelim test: 18202
Number of HSP's gapped (non-prelim): 11970
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)