Query 029065
Match_columns 199
No_of_seqs 119 out of 1124
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 8E-22 1.7E-26 151.4 8.1 154 13-176 15-172 (173)
2 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.8E-19 8.2E-24 140.3 10.2 109 41-165 58-167 (243)
3 PF12847 Methyltransf_18: Meth 99.7 5E-17 1.1E-21 115.4 10.4 104 42-159 1-111 (112)
4 PF13847 Methyltransf_31: Meth 99.7 4.3E-16 9.3E-21 116.9 13.7 110 42-165 3-116 (152)
5 KOG1270 Methyltransferases [Co 99.7 2.5E-17 5.4E-22 131.1 6.8 113 40-164 87-200 (282)
6 PF05175 MTS: Methyltransferas 99.7 5.8E-16 1.2E-20 118.6 13.9 106 42-163 31-144 (170)
7 TIGR00537 hemK_rel_arch HemK-r 99.7 1.8E-15 4E-20 116.6 15.0 130 41-190 18-170 (179)
8 PLN02396 hexaprenyldihydroxybe 99.7 5.5E-16 1.2E-20 129.6 11.3 109 41-163 130-239 (322)
9 COG4123 Predicted O-methyltran 99.7 1.1E-15 2.3E-20 122.4 11.8 126 43-183 45-192 (248)
10 TIGR00138 gidB 16S rRNA methyl 99.6 1.2E-14 2.5E-19 112.5 14.4 129 41-189 41-173 (181)
11 PRK11036 putative S-adenosyl-L 99.6 3.9E-15 8.5E-20 120.9 12.2 108 42-162 44-152 (255)
12 COG2264 PrmA Ribosomal protein 99.6 4.6E-15 1E-19 121.7 11.8 127 40-186 160-289 (300)
13 PRK11207 tellurite resistance 99.6 8.7E-15 1.9E-19 114.6 12.4 100 42-157 30-132 (197)
14 PF06325 PrmA: Ribosomal prote 99.6 3.6E-15 7.7E-20 123.0 10.6 121 40-183 159-281 (295)
15 PF08241 Methyltransf_11: Meth 99.6 3.6E-15 7.9E-20 102.0 8.7 93 47-157 1-95 (95)
16 COG2226 UbiE Methylase involve 99.6 1.7E-14 3.7E-19 115.3 13.2 107 42-163 51-160 (238)
17 PLN02244 tocopherol O-methyltr 99.6 1.2E-14 2.7E-19 122.7 12.8 106 41-160 117-224 (340)
18 PRK00107 gidB 16S rRNA methylt 99.6 3.5E-14 7.7E-19 110.2 14.1 103 42-164 45-150 (187)
19 TIGR00477 tehB tellurite resis 99.6 1.5E-14 3.3E-19 113.1 12.1 100 42-158 30-132 (195)
20 PF01209 Ubie_methyltran: ubiE 99.6 2.8E-14 6E-19 114.5 13.0 110 40-164 45-158 (233)
21 COG2813 RsmC 16S RNA G1207 met 99.6 4E-14 8.6E-19 115.7 13.5 128 43-192 159-295 (300)
22 PRK12335 tellurite resistance 99.6 6.1E-14 1.3E-18 115.9 14.6 102 41-159 119-223 (287)
23 PRK15001 SAM-dependent 23S rib 99.6 8E-14 1.7E-18 118.7 15.2 135 12-160 188-341 (378)
24 COG2230 Cfa Cyclopropane fatty 99.6 1.5E-14 3.2E-19 117.8 9.9 106 39-161 69-178 (283)
25 KOG2793 Putative N2,N2-dimethy 99.6 8.7E-14 1.9E-18 111.4 13.9 168 14-187 52-230 (248)
26 PF03848 TehB: Tellurite resis 99.6 4.9E-14 1.1E-18 109.3 11.9 103 40-159 28-133 (192)
27 PF02353 CMAS: Mycolic acid cy 99.6 2.2E-14 4.7E-19 117.6 10.0 106 39-161 59-168 (273)
28 PRK14967 putative methyltransf 99.6 1.4E-13 3E-18 109.8 14.4 126 42-186 36-185 (223)
29 PLN02233 ubiquinone biosynthes 99.6 1.5E-13 3.3E-18 112.0 14.5 110 42-163 73-186 (261)
30 PF13659 Methyltransf_26: Meth 99.5 2.2E-14 4.7E-19 102.6 7.8 106 43-160 1-116 (117)
31 PRK15068 tRNA mo(5)U34 methylt 99.5 8.1E-14 1.8E-18 116.8 12.3 106 40-160 120-227 (322)
32 TIGR00406 prmA ribosomal prote 99.5 1.4E-13 3E-18 113.8 13.4 123 41-184 158-282 (288)
33 COG3897 Predicted methyltransf 99.5 1.5E-14 3.2E-19 110.7 6.6 116 31-165 68-185 (218)
34 COG2890 HemK Methylase of poly 99.5 2.1E-13 4.6E-18 112.2 13.8 104 45-165 113-244 (280)
35 TIGR00452 methyltransferase, p 99.5 1.1E-13 2.5E-18 115.3 12.2 107 39-160 118-226 (314)
36 PRK10258 biotin biosynthesis p 99.5 9.9E-14 2.2E-18 112.3 11.5 101 42-162 42-143 (251)
37 PRK11783 rlmL 23S rRNA m(2)G24 99.5 1.5E-13 3.3E-18 125.8 14.1 138 41-193 537-688 (702)
38 PF13489 Methyltransf_23: Meth 99.5 1.3E-13 2.9E-18 103.4 11.4 100 40-164 20-120 (161)
39 COG1092 Predicted SAM-dependen 99.5 1.3E-13 2.8E-18 117.4 12.3 143 40-192 215-373 (393)
40 PRK08287 cobalt-precorrin-6Y C 99.5 3.7E-13 8.1E-18 104.4 13.8 100 42-161 31-133 (187)
41 PRK14968 putative methyltransf 99.5 4.7E-13 1E-17 103.2 13.8 129 41-185 22-173 (188)
42 PLN02336 phosphoethanolamine N 99.5 1.7E-13 3.8E-18 120.5 12.5 105 42-162 266-372 (475)
43 TIGR02752 MenG_heptapren 2-hep 99.5 3.4E-13 7.4E-18 107.7 13.1 105 42-161 45-153 (231)
44 PRK15128 23S rRNA m(5)C1962 me 99.5 3.4E-13 7.4E-18 115.8 13.7 149 41-199 219-387 (396)
45 PRK14103 trans-aconitate 2-met 99.5 2E-13 4.4E-18 110.8 11.7 97 41-160 28-127 (255)
46 PTZ00098 phosphoethanolamine N 99.5 1.5E-13 3.1E-18 112.3 10.8 103 42-161 52-158 (263)
47 PF08242 Methyltransf_12: Meth 99.5 5.3E-15 1.2E-19 103.0 1.9 95 47-155 1-99 (99)
48 KOG1499 Protein arginine N-met 99.5 6.6E-14 1.4E-18 115.9 8.5 108 35-156 53-164 (346)
49 PRK09489 rsmC 16S ribosomal RN 99.5 3.3E-13 7.2E-18 113.9 12.9 100 44-161 198-305 (342)
50 PRK11873 arsM arsenite S-adeno 99.5 5.5E-13 1.2E-17 109.2 13.8 104 42-160 77-184 (272)
51 TIGR03704 PrmC_rel_meth putati 99.5 7.4E-13 1.6E-17 107.4 13.8 127 43-188 87-243 (251)
52 PRK00517 prmA ribosomal protei 99.5 4E-13 8.7E-18 108.9 11.9 118 41-185 118-238 (250)
53 smart00828 PKS_MT Methyltransf 99.5 3.6E-13 7.9E-18 107.0 11.5 103 44-161 1-106 (224)
54 TIGR03533 L3_gln_methyl protei 99.5 7.1E-13 1.5E-17 109.4 13.1 104 43-161 122-253 (284)
55 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.5E-13 7.6E-18 109.0 10.6 105 42-162 56-167 (247)
56 PRK14966 unknown domain/N5-glu 99.5 1.2E-12 2.6E-17 112.1 14.4 122 42-180 251-400 (423)
57 PRK01683 trans-aconitate 2-met 99.5 1.5E-12 3.3E-17 105.7 12.9 98 42-160 31-131 (258)
58 TIGR03534 RF_mod_PrmC protein- 99.4 2.3E-12 5E-17 103.9 13.5 121 42-180 87-236 (251)
59 PRK05134 bifunctional 3-demeth 99.4 1.1E-12 2.4E-17 105.0 11.5 108 40-162 46-154 (233)
60 TIGR02469 CbiT precorrin-6Y C5 99.4 2.4E-12 5.1E-17 92.5 12.2 101 42-159 19-122 (124)
61 PRK00121 trmB tRNA (guanine-N( 99.4 1.2E-12 2.5E-17 103.0 11.4 125 42-181 40-177 (202)
62 TIGR00740 methyltransferase, p 99.4 9.6E-13 2.1E-17 105.8 11.1 106 42-163 53-165 (239)
63 TIGR03840 TMPT_Se_Te thiopurin 99.4 2.4E-12 5.1E-17 102.0 13.1 146 42-192 34-194 (213)
64 PF05401 NodS: Nodulation prot 99.4 4.5E-13 9.7E-18 103.4 8.6 100 44-161 45-148 (201)
65 TIGR00536 hemK_fam HemK family 99.4 1.8E-12 3.8E-17 107.0 12.8 107 44-165 116-250 (284)
66 COG2263 Predicted RNA methylas 99.4 4.8E-12 1E-16 96.8 14.0 79 37-134 40-120 (198)
67 KOG3201 Uncharacterized conser 99.4 3.9E-14 8.3E-19 105.3 2.3 150 22-184 9-165 (201)
68 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.7E-12 3.6E-17 101.8 11.2 107 41-162 52-162 (199)
69 PRK00377 cbiT cobalt-precorrin 99.4 1E-11 2.2E-16 97.3 15.2 104 40-159 38-145 (198)
70 PRK11805 N5-glutamine S-adenos 99.4 2.7E-12 5.8E-17 107.0 12.4 103 44-161 135-265 (307)
71 PF10672 Methyltrans_SAM: S-ad 99.4 5.5E-13 1.2E-17 109.5 7.8 143 41-194 122-273 (286)
72 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.9E-12 6.2E-17 107.8 12.3 102 42-161 113-217 (340)
73 PRK01544 bifunctional N5-gluta 99.4 4.2E-12 9.1E-17 112.4 13.6 109 42-165 138-275 (506)
74 TIGR01983 UbiG ubiquinone bios 99.4 3.2E-12 6.9E-17 101.5 11.7 109 40-162 43-152 (224)
75 PF13649 Methyltransf_25: Meth 99.4 5.6E-13 1.2E-17 93.2 6.3 92 46-153 1-101 (101)
76 TIGR00091 tRNA (guanine-N(7)-) 99.4 6E-12 1.3E-16 98.3 12.6 121 42-176 16-147 (194)
77 PRK00216 ubiE ubiquinone/menaq 99.4 5.2E-12 1.1E-16 100.8 12.4 106 42-161 51-160 (239)
78 PF08003 Methyltransf_9: Prote 99.4 4.6E-12 9.9E-17 103.7 12.0 106 39-161 112-221 (315)
79 PRK09328 N5-glutamine S-adenos 99.4 1E-11 2.2E-16 101.6 13.2 105 42-162 108-241 (275)
80 TIGR02072 BioC biotin biosynth 99.4 4.6E-12 1E-16 101.0 10.9 102 41-161 33-137 (240)
81 PRK11705 cyclopropane fatty ac 99.4 3.9E-12 8.5E-17 109.0 11.1 99 41-160 166-268 (383)
82 KOG4300 Predicted methyltransf 99.4 5.3E-12 1.1E-16 97.6 10.1 114 45-172 79-196 (252)
83 PRK08317 hypothetical protein; 99.4 1E-11 2.2E-16 98.8 12.2 104 41-160 18-125 (241)
84 PRK13255 thiopurine S-methyltr 99.4 1.3E-11 2.9E-16 98.0 12.5 144 42-190 37-195 (218)
85 TIGR00095 RNA methyltransferas 99.4 7.6E-12 1.6E-16 97.4 10.6 110 40-161 47-161 (189)
86 TIGR02021 BchM-ChlM magnesium 99.4 6.4E-12 1.4E-16 99.7 10.4 101 40-157 53-156 (219)
87 PRK05785 hypothetical protein; 99.4 1.5E-11 3.2E-16 98.3 12.2 87 43-152 52-140 (226)
88 PLN02672 methionine S-methyltr 99.3 1.4E-11 3E-16 116.0 13.8 143 41-187 117-305 (1082)
89 PRK13168 rumA 23S rRNA m(5)U19 99.3 1.3E-11 2.8E-16 107.8 12.6 127 42-186 297-425 (443)
90 TIGR00080 pimt protein-L-isoas 99.3 1.1E-11 2.3E-16 98.3 10.9 99 41-160 76-178 (215)
91 TIGR02716 C20_methyl_CrtF C-20 99.3 2.3E-11 5E-16 101.3 12.0 104 42-161 149-256 (306)
92 PRK03522 rumB 23S rRNA methylu 99.3 3E-11 6.6E-16 101.1 12.6 123 42-185 173-296 (315)
93 PRK13944 protein-L-isoaspartat 99.3 3.1E-11 6.8E-16 95.0 11.9 99 42-160 72-174 (205)
94 PRK07402 precorrin-6B methylas 99.3 1E-10 2.2E-15 91.4 14.7 129 42-188 40-173 (196)
95 PLN02585 magnesium protoporphy 99.3 4.6E-11 1E-15 99.8 13.2 104 41-159 143-249 (315)
96 PLN02336 phosphoethanolamine N 99.3 1.6E-11 3.4E-16 108.1 10.9 103 42-159 37-142 (475)
97 PRK11188 rrmJ 23S rRNA methylt 99.3 5.4E-11 1.2E-15 94.0 12.7 116 41-180 50-184 (209)
98 TIGR01177 conserved hypothetic 99.3 3.2E-11 7E-16 101.5 12.1 106 42-162 182-297 (329)
99 PRK04266 fibrillarin; Provisio 99.3 9.7E-11 2.1E-15 93.6 13.8 128 42-185 72-210 (226)
100 TIGR03587 Pse_Me-ase pseudamin 99.3 2.7E-11 5.9E-16 95.4 10.5 95 42-159 43-142 (204)
101 PF03602 Cons_hypoth95: Conser 99.3 5.3E-12 1.1E-16 97.7 6.1 110 41-162 41-156 (183)
102 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 5.1E-11 1.1E-15 94.0 11.8 103 42-161 39-145 (223)
103 cd02440 AdoMet_MTases S-adenos 99.3 4.9E-11 1.1E-15 81.5 10.2 100 45-158 1-103 (107)
104 PRK13942 protein-L-isoaspartat 99.3 5.4E-11 1.2E-15 94.2 11.4 98 41-159 75-176 (212)
105 PRK07580 Mg-protoporphyrin IX 99.3 4E-11 8.7E-16 95.5 10.8 96 41-153 62-160 (230)
106 PRK06922 hypothetical protein; 99.3 3.1E-11 6.6E-16 108.1 11.0 106 41-160 417-538 (677)
107 TIGR02085 meth_trns_rumB 23S r 99.3 1.1E-10 2.4E-15 99.8 13.4 124 42-186 233-357 (374)
108 PRK00312 pcm protein-L-isoaspa 99.3 1.1E-10 2.3E-15 92.3 12.1 99 41-160 77-176 (212)
109 PRK06202 hypothetical protein; 99.2 1.2E-10 2.6E-15 93.2 11.8 102 42-163 60-170 (232)
110 KOG2904 Predicted methyltransf 99.2 2.6E-10 5.7E-15 91.7 12.9 115 37-162 143-288 (328)
111 KOG1500 Protein arginine N-met 99.2 4.2E-11 9E-16 98.8 8.4 106 36-157 171-280 (517)
112 KOG3191 Predicted N6-DNA-methy 99.2 2.3E-10 4.9E-15 86.9 11.7 130 43-191 44-199 (209)
113 TIGR00479 rumA 23S rRNA (uraci 99.2 1.4E-10 3.1E-15 101.0 11.7 126 42-185 292-420 (431)
114 KOG1271 Methyltransferases [Ge 99.2 2.9E-10 6.4E-15 86.5 11.6 120 45-181 70-201 (227)
115 COG2242 CobL Precorrin-6B meth 99.2 1.1E-09 2.5E-14 83.9 14.9 123 42-185 34-161 (187)
116 smart00138 MeTrc Methyltransfe 99.2 5.9E-11 1.3E-15 97.0 8.1 116 42-160 99-243 (264)
117 PRK13256 thiopurine S-methyltr 99.2 4.9E-10 1.1E-14 89.2 12.7 144 42-188 43-200 (226)
118 PLN03075 nicotianamine synthas 99.2 3E-10 6.6E-15 93.6 11.8 105 42-160 123-234 (296)
119 COG4106 Tam Trans-aconitate me 99.2 1.3E-10 2.8E-15 90.6 8.8 100 44-164 32-134 (257)
120 PRK14902 16S rRNA methyltransf 99.2 7.6E-10 1.6E-14 96.8 14.6 107 42-162 250-382 (444)
121 PRK14121 tRNA (guanine-N(7)-)- 99.2 3.2E-10 7E-15 96.6 11.8 107 42-161 122-237 (390)
122 PHA03411 putative methyltransf 99.2 3.2E-10 6.9E-15 92.3 11.2 99 43-162 65-186 (279)
123 COG0742 N6-adenine-specific me 99.2 2.9E-10 6.2E-15 87.5 10.3 111 40-162 41-157 (187)
124 PRK10901 16S rRNA methyltransf 99.2 5.4E-10 1.2E-14 97.2 13.3 106 41-160 243-373 (427)
125 TIGR03438 probable methyltrans 99.2 2.6E-10 5.7E-15 94.8 10.8 109 42-161 63-179 (301)
126 PHA03412 putative methyltransf 99.2 1.7E-10 3.7E-15 92.0 8.8 92 42-154 49-158 (241)
127 COG2518 Pcm Protein-L-isoaspar 99.2 3.6E-10 7.8E-15 88.3 10.4 100 40-160 70-170 (209)
128 PRK04457 spermidine synthase; 99.2 5.2E-10 1.1E-14 91.3 11.6 123 42-179 66-196 (262)
129 PTZ00146 fibrillarin; Provisio 99.1 1.6E-09 3.5E-14 89.0 14.2 107 41-163 131-241 (293)
130 PRK14903 16S rRNA methyltransf 99.1 8E-10 1.7E-14 96.2 13.1 109 42-164 237-371 (431)
131 PRK14901 16S rRNA methyltransf 99.1 1.7E-09 3.7E-14 94.3 15.2 109 42-162 252-387 (434)
132 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1E-09 2.2E-14 89.7 12.9 108 42-164 71-204 (264)
133 PRK11088 rrmA 23S rRNA methylt 99.1 4.5E-10 9.8E-15 92.1 10.5 94 42-162 85-184 (272)
134 KOG1540 Ubiquinone biosynthesi 99.1 2.8E-09 6.1E-14 85.1 14.3 108 41-160 99-215 (296)
135 PLN02781 Probable caffeoyl-CoA 99.1 4.2E-10 9.2E-15 90.4 9.7 104 42-159 68-178 (234)
136 TIGR00438 rrmJ cell division p 99.1 1.7E-09 3.6E-14 83.9 12.8 118 41-182 31-167 (188)
137 PRK11727 23S rRNA mA1618 methy 99.1 2.5E-10 5.5E-15 95.3 8.3 84 42-136 114-203 (321)
138 smart00650 rADc Ribosomal RNA 99.1 9E-10 1.9E-14 84.1 10.4 98 42-159 13-113 (169)
139 PRK05031 tRNA (uracil-5-)-meth 99.1 1.2E-09 2.5E-14 93.2 12.0 123 44-186 208-344 (362)
140 KOG3420 Predicted RNA methylas 99.1 1.3E-10 2.9E-15 85.2 5.1 80 39-134 45-126 (185)
141 KOG1541 Predicted protein carb 99.1 1.5E-09 3.2E-14 85.0 11.0 118 42-178 50-180 (270)
142 PRK14904 16S rRNA methyltransf 99.1 3.3E-09 7.3E-14 92.8 14.5 123 41-180 249-401 (445)
143 COG4976 Predicted methyltransf 99.1 2.7E-11 5.9E-16 95.1 0.9 128 44-189 127-269 (287)
144 TIGR02143 trmA_only tRNA (urac 99.0 3.2E-09 6.9E-14 90.2 12.2 123 43-185 198-334 (353)
145 PRK00811 spermidine synthase; 99.0 3.8E-09 8.2E-14 87.2 12.3 128 42-178 76-212 (283)
146 PRK13943 protein-L-isoaspartat 99.0 3E-09 6.5E-14 89.1 11.7 98 42-160 80-181 (322)
147 TIGR00563 rsmB ribosomal RNA s 99.0 1E-08 2.2E-13 89.3 14.5 120 42-173 238-386 (426)
148 KOG2899 Predicted methyltransf 99.0 4.4E-09 9.5E-14 83.4 10.8 128 35-162 51-212 (288)
149 PLN02476 O-methyltransferase 99.0 8.1E-09 1.7E-13 84.6 12.5 108 42-163 118-232 (278)
150 TIGR02081 metW methionine bios 99.0 3E-09 6.5E-14 82.9 9.5 90 42-151 13-104 (194)
151 PF05724 TPMT: Thiopurine S-me 99.0 1.8E-09 4E-14 85.7 7.8 141 42-186 37-191 (218)
152 PRK04338 N(2),N(2)-dimethylgua 99.0 3.8E-09 8.1E-14 90.6 9.9 98 43-159 58-158 (382)
153 TIGR00417 speE spermidine synt 99.0 1.5E-08 3.3E-13 83.0 12.5 108 42-159 72-186 (270)
154 PF01596 Methyltransf_3: O-met 98.9 3.7E-09 8E-14 83.2 8.0 106 42-161 45-157 (205)
155 PF01135 PCMT: Protein-L-isoas 98.9 4.4E-09 9.5E-14 83.0 8.4 100 40-160 70-173 (209)
156 PF07021 MetW: Methionine bios 98.9 4.4E-09 9.6E-14 81.1 7.8 97 42-161 13-111 (193)
157 COG4122 Predicted O-methyltran 98.9 1.7E-08 3.8E-13 79.8 9.8 106 42-162 59-169 (219)
158 PRK03612 spermidine synthase; 98.9 4.6E-08 1E-12 87.2 13.1 132 42-180 297-439 (521)
159 PF02475 Met_10: Met-10+ like- 98.9 1.6E-08 3.6E-13 79.2 8.8 96 42-156 101-199 (200)
160 PF00891 Methyltransf_2: O-met 98.8 1.3E-08 2.9E-13 81.8 8.6 96 43-162 101-202 (241)
161 KOG2361 Predicted methyltransf 98.8 8.6E-09 1.9E-13 81.7 7.1 113 45-170 74-194 (264)
162 COG2519 GCD14 tRNA(1-methylade 98.8 1.4E-07 3E-12 75.6 13.8 103 38-160 90-196 (256)
163 COG2265 TrmA SAM-dependent met 98.8 4.5E-08 9.8E-13 85.0 11.8 126 42-185 293-420 (432)
164 PF02527 GidB: rRNA small subu 98.8 2.5E-08 5.4E-13 77.2 9.0 121 45-185 51-175 (184)
165 PRK14896 ksgA 16S ribosomal RN 98.8 1.8E-08 4E-13 82.1 8.5 75 41-134 28-103 (258)
166 PRK00274 ksgA 16S ribosomal RN 98.8 3.3E-08 7.1E-13 81.2 9.9 75 42-134 42-117 (272)
167 TIGR00308 TRM1 tRNA(guanine-26 98.8 3E-08 6.4E-13 84.8 9.5 98 44-159 46-147 (374)
168 PF05185 PRMT5: PRMT5 arginine 98.8 3.4E-08 7.4E-13 86.2 9.9 98 42-154 186-292 (448)
169 PTZ00338 dimethyladenosine tra 98.8 2.5E-08 5.5E-13 82.7 7.7 79 41-135 35-114 (294)
170 PLN02366 spermidine synthase 98.8 1.8E-07 4E-12 78.0 12.7 128 42-178 91-227 (308)
171 PLN02589 caffeoyl-CoA O-methyl 98.7 5.9E-08 1.3E-12 78.5 9.0 104 42-159 79-190 (247)
172 PRK01581 speE spermidine synth 98.7 6.3E-08 1.4E-12 81.9 9.3 107 42-158 150-267 (374)
173 COG0357 GidB Predicted S-adeno 98.7 1.2E-07 2.7E-12 74.8 10.0 128 43-190 68-200 (215)
174 PF05219 DREV: DREV methyltran 98.7 1.1E-07 2.4E-12 76.6 9.4 95 41-159 93-188 (265)
175 KOG3010 Methyltransferase [Gen 98.7 3.2E-08 6.8E-13 78.5 5.4 102 44-160 35-137 (261)
176 PF02390 Methyltransf_4: Putat 98.7 2.2E-07 4.7E-12 72.7 9.9 105 45-161 20-135 (195)
177 PF05891 Methyltransf_PK: AdoM 98.7 2E-07 4.4E-12 73.3 9.7 107 41-162 54-164 (218)
178 PF08704 GCD14: tRNA methyltra 98.7 1.1E-06 2.4E-11 71.0 13.8 107 35-157 33-144 (247)
179 PRK04148 hypothetical protein; 98.6 4.2E-07 9.2E-12 66.5 9.9 70 41-131 15-86 (134)
180 KOG2920 Predicted methyltransf 98.6 3.7E-09 8.1E-14 85.7 -1.3 150 9-166 85-241 (282)
181 COG1041 Predicted DNA modifica 98.6 4.5E-07 9.7E-12 75.9 10.9 104 42-160 197-311 (347)
182 PF09445 Methyltransf_15: RNA 98.6 1.3E-07 2.7E-12 71.7 6.7 78 44-132 1-79 (163)
183 PF05958 tRNA_U5-meth_tr: tRNA 98.6 7.3E-07 1.6E-11 75.8 12.0 121 45-185 199-333 (352)
184 TIGR00478 tly hemolysin TlyA f 98.6 9.3E-08 2E-12 76.4 6.2 95 39-157 72-169 (228)
185 PF01170 UPF0020: Putative RNA 98.6 1.7E-07 3.6E-12 72.4 7.4 103 42-159 28-150 (179)
186 COG2520 Predicted methyltransf 98.5 1.4E-06 3.1E-11 73.2 12.1 103 42-162 188-292 (341)
187 PLN02232 ubiquinone biosynthes 98.5 7.7E-07 1.7E-11 67.4 9.6 85 68-164 1-86 (160)
188 TIGR00755 ksgA dimethyladenosi 98.5 3E-07 6.4E-12 74.7 7.1 73 42-133 29-105 (253)
189 PF03291 Pox_MCEL: mRNA cappin 98.5 6E-07 1.3E-11 75.6 8.5 119 42-162 62-189 (331)
190 PF06080 DUF938: Protein of un 98.5 6.5E-07 1.4E-11 70.0 7.7 107 45-162 28-144 (204)
191 COG0220 Predicted S-adenosylme 98.5 2.1E-06 4.5E-11 68.6 10.4 107 44-162 50-167 (227)
192 PLN02823 spermine synthase 98.4 4.2E-06 9.2E-11 70.6 11.8 127 42-178 103-243 (336)
193 COG2521 Predicted archaeal met 98.4 1.7E-06 3.7E-11 68.5 7.8 128 42-180 134-272 (287)
194 PF05971 Methyltransf_10: Prot 98.4 2.7E-06 5.8E-11 70.4 9.2 84 42-136 102-191 (299)
195 TIGR02987 met_A_Alw26 type II 98.4 7.9E-06 1.7E-10 73.1 12.8 131 42-184 31-223 (524)
196 PRK10611 chemotaxis methyltran 98.3 2.9E-06 6.3E-11 70.1 8.4 115 43-159 116-262 (287)
197 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4.1E-06 8.8E-11 77.3 10.1 108 42-161 190-349 (702)
198 PF01739 CheR: CheR methyltran 98.3 4.2E-07 9.1E-12 71.1 3.1 116 42-160 31-176 (196)
199 KOG2940 Predicted methyltransf 98.3 6.4E-07 1.4E-11 70.9 3.7 102 43-161 73-176 (325)
200 PF12147 Methyltransf_20: Puta 98.3 2E-05 4.4E-10 64.5 12.1 137 42-190 135-281 (311)
201 PF02384 N6_Mtase: N-6 DNA Met 98.3 9.2E-06 2E-10 67.7 10.3 129 42-181 46-208 (311)
202 KOG1661 Protein-L-isoaspartate 98.2 7.7E-06 1.7E-10 63.9 8.8 112 38-160 78-194 (237)
203 KOG1975 mRNA cap methyltransfe 98.2 5.1E-06 1.1E-10 68.7 7.8 115 42-162 117-240 (389)
204 PRK00536 speE spermidine synth 98.2 3.9E-05 8.5E-10 62.5 12.9 119 42-179 72-193 (262)
205 KOG2187 tRNA uracil-5-methyltr 98.2 5.9E-06 1.3E-10 72.1 8.4 108 42-162 383-493 (534)
206 COG1352 CheR Methylase of chem 98.2 5.6E-06 1.2E-10 67.7 6.9 117 42-161 96-243 (268)
207 PF08123 DOT1: Histone methyla 98.1 2.9E-06 6.3E-11 66.8 4.2 153 42-199 42-200 (205)
208 COG0030 KsgA Dimethyladenosine 98.1 1E-05 2.3E-10 65.6 7.5 76 43-134 31-107 (259)
209 PF05148 Methyltransf_8: Hypot 98.1 2.4E-05 5.3E-10 61.3 9.0 111 41-182 71-182 (219)
210 PF01564 Spermine_synth: Sperm 98.1 7.2E-05 1.6E-09 60.6 12.2 128 42-179 76-213 (246)
211 PRK11933 yebU rRNA (cytosine-C 98.1 9.5E-05 2.1E-09 65.2 13.5 109 41-163 112-246 (470)
212 COG3963 Phospholipid N-methylt 98.1 2.4E-05 5.3E-10 59.1 8.2 99 42-157 48-154 (194)
213 PF01728 FtsJ: FtsJ-like methy 98.1 3.4E-06 7.4E-11 64.9 3.8 113 42-178 23-156 (181)
214 COG0116 Predicted N6-adenine-s 98.1 5E-05 1.1E-09 64.6 10.8 104 43-160 192-345 (381)
215 KOG3045 Predicted RNA methylas 98.1 3.2E-05 7E-10 62.3 9.0 107 42-181 180-287 (325)
216 PRK01544 bifunctional N5-gluta 98.0 4.3E-05 9.3E-10 68.1 10.4 107 42-161 347-464 (506)
217 KOG1663 O-methyltransferase [S 98.0 2E-05 4.4E-10 62.3 7.1 105 41-159 72-183 (237)
218 PF01861 DUF43: Protein of unk 98.0 0.00036 7.8E-09 55.9 13.8 133 36-184 38-177 (243)
219 PF03141 Methyltransf_29: Puta 98.0 5.9E-06 1.3E-10 72.1 3.9 141 3-163 74-223 (506)
220 PRK10742 putative methyltransf 98.0 7.8E-05 1.7E-09 60.1 9.7 84 45-134 91-176 (250)
221 KOG0820 Ribosomal RNA adenine 97.9 4.2E-05 9.1E-10 62.0 7.8 75 42-132 58-133 (315)
222 COG4076 Predicted RNA methylas 97.9 2.3E-05 4.9E-10 60.4 5.2 96 43-155 33-131 (252)
223 TIGR01444 fkbM_fam methyltrans 97.9 6.5E-05 1.4E-09 55.2 7.7 57 45-113 1-60 (143)
224 COG0293 FtsJ 23S rRNA methylas 97.9 0.00021 4.6E-09 56.0 10.4 115 42-180 45-178 (205)
225 COG0500 SmtA SAM-dependent met 97.9 0.00053 1.1E-08 48.9 12.0 103 46-163 52-159 (257)
226 COG0421 SpeE Spermidine syntha 97.9 0.00013 2.7E-09 60.3 9.5 105 44-158 78-189 (282)
227 PF00398 RrnaAD: Ribosomal RNA 97.8 0.0002 4.2E-09 58.5 10.1 93 42-151 30-123 (262)
228 KOG1501 Arginine N-methyltrans 97.8 5.2E-05 1.1E-09 65.2 6.6 96 45-154 69-170 (636)
229 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 1.9E-05 4.2E-10 64.1 3.4 150 35-184 49-238 (256)
230 COG0144 Sun tRNA and rRNA cyto 97.8 0.00086 1.9E-08 57.2 13.3 112 42-165 156-294 (355)
231 PF09243 Rsm22: Mitochondrial 97.8 0.00034 7.5E-09 57.5 10.5 124 40-181 31-164 (274)
232 PF04816 DUF633: Family of unk 97.8 0.00088 1.9E-08 52.8 12.2 116 46-180 1-119 (205)
233 PF07942 N2227: N2227-like pro 97.7 0.0004 8.7E-09 56.8 10.6 113 41-154 55-197 (270)
234 PF03059 NAS: Nicotianamine sy 97.7 0.00065 1.4E-08 55.8 11.8 105 43-161 121-232 (276)
235 TIGR03439 methyl_EasF probable 97.7 0.00044 9.5E-09 58.1 9.7 107 42-160 76-198 (319)
236 PHA01634 hypothetical protein 97.6 0.00012 2.5E-09 53.0 4.9 53 35-87 21-75 (156)
237 PRK11760 putative 23S rRNA C24 97.6 0.001 2.2E-08 56.1 10.4 96 40-160 209-306 (357)
238 COG1189 Predicted rRNA methyla 97.5 0.00089 1.9E-08 53.5 8.8 102 37-158 74-177 (245)
239 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00031 6.8E-09 58.3 5.9 43 42-84 19-65 (296)
240 KOG1709 Guanidinoacetate methy 97.4 0.0018 4E-08 51.0 9.7 105 41-159 100-206 (271)
241 KOG2730 Methylase [General fun 97.3 0.00012 2.6E-09 57.8 2.3 98 43-151 95-194 (263)
242 KOG3987 Uncharacterized conser 97.3 5.2E-05 1.1E-09 59.3 0.3 93 43-159 113-207 (288)
243 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0013 2.8E-08 56.5 8.1 102 43-160 50-155 (377)
244 PF01269 Fibrillarin: Fibrilla 97.2 0.013 2.9E-07 46.5 12.7 126 40-181 71-208 (229)
245 PF06962 rRNA_methylase: Putat 97.2 0.0058 1.3E-07 45.1 9.6 105 66-183 1-123 (140)
246 KOG2915 tRNA(1-methyladenosine 97.2 0.0083 1.8E-07 49.0 11.1 105 40-161 103-211 (314)
247 COG5459 Predicted rRNA methyla 97.1 0.0012 2.7E-08 55.6 6.1 110 39-165 110-231 (484)
248 PF11968 DUF3321: Putative met 97.1 0.0045 9.8E-08 48.9 8.9 112 44-182 53-178 (219)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.1 0.0049 1.1E-07 51.0 9.1 129 42-184 85-247 (283)
250 PF13679 Methyltransf_32: Meth 97.0 0.0018 3.9E-08 47.8 5.9 47 41-87 24-77 (141)
251 PF13578 Methyltransf_24: Meth 97.0 0.00021 4.6E-09 49.9 0.2 99 47-158 1-104 (106)
252 KOG3178 Hydroxyindole-O-methyl 96.9 0.0052 1.1E-07 51.7 8.2 98 41-161 175-277 (342)
253 KOG1269 SAM-dependent methyltr 96.9 0.0043 9.3E-08 53.0 7.5 104 40-157 108-213 (364)
254 COG2384 Predicted SAM-dependen 96.9 0.026 5.7E-07 44.7 11.3 115 42-173 16-133 (226)
255 KOG4589 Cell division protein 96.8 0.018 3.9E-07 44.6 9.7 119 42-185 69-209 (232)
256 COG1568 Predicted methyltransf 96.8 0.015 3.3E-07 47.6 9.7 125 36-175 146-276 (354)
257 cd00315 Cyt_C5_DNA_methylase C 96.6 0.0074 1.6E-07 49.6 6.9 69 45-132 2-72 (275)
258 PF04445 SAM_MT: Putative SAM- 96.6 0.018 3.9E-07 46.2 8.5 80 45-132 78-161 (234)
259 PF04672 Methyltransf_19: S-ad 96.5 0.01 2.3E-07 48.4 7.1 106 44-162 70-193 (267)
260 KOG1122 tRNA and rRNA cytosine 96.4 0.085 1.9E-06 45.6 11.8 111 42-165 241-377 (460)
261 KOG2671 Putative RNA methylase 96.4 0.0039 8.4E-08 52.4 3.7 107 42-160 208-355 (421)
262 COG3129 Predicted SAM-dependen 96.3 0.0071 1.5E-07 48.3 4.9 88 37-135 72-166 (292)
263 COG1867 TRM1 N2,N2-dimethylgua 96.3 0.022 4.8E-07 48.4 8.1 100 43-160 53-155 (380)
264 KOG2798 Putative trehalase [Ca 96.3 0.031 6.7E-07 46.6 8.6 114 43-156 151-293 (369)
265 PRK09424 pntA NAD(P) transhydr 96.0 0.085 1.8E-06 47.2 10.8 106 40-159 162-285 (509)
266 PF03492 Methyltransf_7: SAM d 96.0 0.094 2E-06 44.4 10.3 111 42-164 16-188 (334)
267 COG1064 AdhP Zn-dependent alco 95.9 0.039 8.6E-07 46.7 7.5 95 40-161 164-261 (339)
268 PF03141 Methyltransf_29: Puta 95.8 0.023 4.9E-07 50.2 5.7 121 44-186 367-492 (506)
269 PF00145 DNA_methylase: C-5 cy 95.7 0.022 4.8E-07 47.2 5.3 68 45-132 2-71 (335)
270 COG4262 Predicted spermidine s 95.6 0.17 3.6E-06 43.3 10.2 110 42-159 288-407 (508)
271 COG1889 NOP1 Fibrillarin-like 95.6 0.7 1.5E-05 36.4 12.9 108 41-164 75-185 (231)
272 KOG1253 tRNA methyltransferase 95.6 0.01 2.2E-07 52.1 3.1 107 39-160 106-217 (525)
273 PLN02668 indole-3-acetate carb 95.6 0.14 3.1E-06 44.1 10.0 26 138-163 216-241 (386)
274 PF01555 N6_N4_Mtase: DNA meth 95.6 0.027 5.8E-07 44.1 5.1 40 42-81 191-231 (231)
275 KOG2352 Predicted spermine/spe 95.5 0.098 2.1E-06 46.0 8.7 99 44-159 50-161 (482)
276 KOG3115 Methyltransferase-like 95.4 0.064 1.4E-06 42.1 6.5 115 42-161 60-185 (249)
277 KOG0024 Sorbitol dehydrogenase 95.3 0.05 1.1E-06 45.6 6.1 97 42-160 169-274 (354)
278 COG1063 Tdh Threonine dehydrog 95.1 0.067 1.4E-06 45.5 6.6 99 41-161 167-271 (350)
279 PRK11524 putative methyltransf 95.1 0.055 1.2E-06 44.7 5.8 44 42-85 208-252 (284)
280 PF10237 N6-adenineMlase: Prob 95.1 0.085 1.8E-06 40.0 6.3 99 43-162 26-126 (162)
281 KOG2198 tRNA cytosine-5-methyl 95.1 0.8 1.7E-05 39.1 12.6 131 42-184 155-325 (375)
282 KOG3350 Uncharacterized conser 95.0 0.057 1.2E-06 41.4 5.0 89 104-194 116-205 (217)
283 KOG1201 Hydroxysteroid 17-beta 94.9 0.25 5.4E-06 41.0 8.9 82 37-132 32-124 (300)
284 KOG1331 Predicted methyltransf 94.9 0.007 1.5E-07 49.6 -0.1 93 42-157 45-141 (293)
285 KOG2078 tRNA modification enzy 94.8 0.016 3.4E-07 50.1 1.8 47 42-88 249-296 (495)
286 PF07091 FmrO: Ribosomal RNA m 94.8 0.16 3.6E-06 41.0 7.4 73 43-132 106-181 (251)
287 PRK13699 putative methylase; P 94.6 0.097 2.1E-06 41.9 5.8 44 42-85 163-207 (227)
288 PF07757 AdoMet_MTase: Predict 94.6 0.028 6.1E-07 39.5 2.3 29 44-72 60-88 (112)
289 COG0270 Dcm Site-specific DNA 94.1 0.11 2.4E-06 43.8 5.5 73 43-132 3-77 (328)
290 KOG4058 Uncharacterized conser 93.9 0.23 5E-06 37.2 6.0 101 38-158 69-171 (199)
291 TIGR00675 dcm DNA-methyltransf 93.4 0.17 3.7E-06 42.5 5.2 38 46-83 1-40 (315)
292 PRK09880 L-idonate 5-dehydroge 93.3 0.62 1.3E-05 39.1 8.6 94 42-159 169-266 (343)
293 KOG1227 Putative methyltransfe 93.0 0.06 1.3E-06 44.7 1.9 46 43-88 195-243 (351)
294 COG0286 HsdM Type I restrictio 92.9 0.95 2.1E-05 40.4 9.5 107 43-160 187-327 (489)
295 TIGR00006 S-adenosyl-methyltra 92.8 0.42 9.2E-06 40.0 6.7 44 42-85 20-66 (305)
296 PRK05786 fabG 3-ketoacyl-(acyl 92.8 2.2 4.7E-05 33.4 10.7 78 41-132 3-91 (238)
297 PRK11524 putative methyltransf 92.6 0.18 3.9E-06 41.6 4.2 57 104-161 10-82 (284)
298 cd08230 glucose_DH Glucose deh 92.5 0.71 1.5E-05 38.9 7.9 91 42-159 172-269 (355)
299 TIGR00561 pntA NAD(P) transhyd 92.4 0.86 1.9E-05 40.9 8.5 98 40-156 161-281 (511)
300 PF04989 CmcI: Cephalosporin h 92.3 0.75 1.6E-05 36.2 7.2 105 42-160 32-148 (206)
301 KOG0725 Reductases with broad 92.2 3.6 7.8E-05 33.7 11.4 85 38-132 3-99 (270)
302 COG1748 LYS9 Saccharopine dehy 92.1 0.95 2.1E-05 39.2 8.1 75 44-134 2-80 (389)
303 KOG2497 Predicted methyltransf 91.6 0.069 1.5E-06 43.6 0.7 108 33-149 81-190 (262)
304 PF06859 Bin3: Bicoid-interact 91.6 0.082 1.8E-06 37.3 0.9 40 122-161 1-46 (110)
305 PRK06124 gluconate 5-dehydroge 91.4 6.1 0.00013 31.3 12.0 82 38-132 6-98 (256)
306 PRK10458 DNA cytosine methylas 91.1 0.64 1.4E-05 41.2 6.3 40 43-82 88-129 (467)
307 cd08283 FDH_like_1 Glutathione 91.0 0.58 1.3E-05 40.1 5.9 104 41-159 183-306 (386)
308 KOG2912 Predicted DNA methylas 91.0 0.25 5.3E-06 41.5 3.3 78 47-135 107-191 (419)
309 PF03269 DUF268: Caenorhabditi 90.7 0.35 7.5E-06 36.7 3.6 120 43-183 2-143 (177)
310 KOG3924 Putative protein methy 90.2 0.79 1.7E-05 39.5 5.7 113 42-162 192-311 (419)
311 PRK06701 short chain dehydroge 90.2 3.8 8.2E-05 33.6 9.8 80 39-131 42-133 (290)
312 TIGR01202 bchC 2-desacetyl-2-h 90.2 1.8 4E-05 35.7 8.0 84 42-159 144-231 (308)
313 TIGR00027 mthyl_TIGR00027 meth 90.0 1.9 4.1E-05 35.2 7.8 108 44-161 83-199 (260)
314 PF11599 AviRa: RRNA methyltra 89.9 0.57 1.2E-05 37.2 4.3 122 42-163 51-218 (246)
315 PF01555 N6_N4_Mtase: DNA meth 89.6 1 2.2E-05 34.9 5.8 57 123-180 1-78 (231)
316 PRK07806 short chain dehydroge 88.6 9.2 0.0002 30.0 10.7 105 41-158 4-134 (248)
317 PF00107 ADH_zinc_N: Zinc-bind 88.6 0.12 2.6E-06 36.9 -0.3 84 52-161 1-91 (130)
318 PRK08324 short chain dehydroge 88.5 4 8.8E-05 37.9 9.6 81 38-132 417-508 (681)
319 KOG2651 rRNA adenine N-6-methy 88.3 1.1 2.5E-05 38.5 5.3 31 44-74 155-186 (476)
320 TIGR03451 mycoS_dep_FDH mycoth 88.1 1.2 2.5E-05 37.7 5.4 39 41-79 175-217 (358)
321 COG2961 ComJ Protein involved 87.8 6.1 0.00013 32.2 8.9 116 47-176 93-212 (279)
322 PRK05867 short chain dehydroge 87.7 3 6.4E-05 33.1 7.3 79 41-132 7-96 (253)
323 PRK07097 gluconate 5-dehydroge 87.7 3.4 7.4E-05 33.1 7.8 83 37-132 4-97 (265)
324 COG3392 Adenine-specific DNA m 87.5 0.86 1.9E-05 37.3 3.9 35 38-72 23-57 (330)
325 PRK08265 short chain dehydroge 87.5 9.5 0.00021 30.5 10.2 76 41-132 4-90 (261)
326 PRK08339 short chain dehydroge 87.4 3 6.4E-05 33.6 7.3 79 41-131 6-94 (263)
327 PRK07109 short chain dehydroge 87.3 12 0.00026 31.4 11.1 79 41-132 6-95 (334)
328 cd08254 hydroxyacyl_CoA_DH 6-h 87.2 1.5 3.3E-05 36.2 5.6 95 42-158 165-262 (338)
329 COG4301 Uncharacterized conser 87.1 6.1 0.00013 32.3 8.5 110 43-163 79-197 (321)
330 TIGR02822 adh_fam_2 zinc-bindi 87.0 8.1 0.00017 32.3 9.9 87 42-159 165-254 (329)
331 PRK06139 short chain dehydroge 87.0 2.9 6.3E-05 35.2 7.2 79 41-132 5-94 (330)
332 PRK13699 putative methylase; P 87.0 2.5 5.5E-05 33.7 6.5 59 119-180 17-91 (227)
333 TIGR03366 HpnZ_proposed putati 86.8 3.8 8.2E-05 33.3 7.6 95 42-159 120-218 (280)
334 PRK08267 short chain dehydroge 86.7 7.7 0.00017 30.8 9.3 74 44-132 2-87 (260)
335 PRK12548 shikimate 5-dehydroge 86.6 3.5 7.5E-05 34.1 7.3 33 40-73 123-159 (289)
336 KOG1099 SAM-dependent methyltr 86.4 1.2 2.6E-05 35.8 4.2 97 40-158 38-162 (294)
337 PRK05854 short chain dehydroge 86.3 5.6 0.00012 33.0 8.5 82 40-132 11-103 (313)
338 PRK07814 short chain dehydroge 86.0 14 0.00031 29.4 10.5 78 41-131 8-96 (263)
339 PF10354 DUF2431: Domain of un 86.0 13 0.00028 28.2 9.9 45 120-164 73-130 (166)
340 PRK07792 fabG 3-ketoacyl-(acyl 86.0 3.9 8.4E-05 33.8 7.3 82 38-132 7-99 (306)
341 PRK06128 oxidoreductase; Provi 85.9 12 0.00026 30.6 10.3 80 40-132 52-144 (300)
342 PRK08703 short chain dehydroge 85.8 7 0.00015 30.6 8.5 42 40-81 3-48 (239)
343 PLN02586 probable cinnamyl alc 85.8 3.7 8.1E-05 34.8 7.3 32 42-73 183-216 (360)
344 cd05188 MDR Medium chain reduc 85.7 2.3 5E-05 33.6 5.7 94 41-160 133-233 (271)
345 PRK08589 short chain dehydroge 85.6 6.6 0.00014 31.6 8.4 79 41-132 4-92 (272)
346 PF02086 MethyltransfD12: D12 85.6 1.3 2.7E-05 35.6 4.1 33 42-74 20-52 (260)
347 PRK07063 short chain dehydroge 85.5 3.7 7.9E-05 32.7 6.8 81 41-132 5-96 (260)
348 PRK05876 short chain dehydroge 85.2 4.4 9.6E-05 32.9 7.3 79 41-132 4-93 (275)
349 PRK06125 short chain dehydroge 85.1 6.7 0.00015 31.2 8.2 80 41-132 5-91 (259)
350 PF06460 NSP13: Coronavirus NS 85.0 7.3 0.00016 32.0 8.1 92 41-161 60-171 (299)
351 KOG1562 Spermidine synthase [A 85.0 7.2 0.00016 32.6 8.2 110 40-159 119-236 (337)
352 TIGR00518 alaDH alanine dehydr 84.9 3 6.6E-05 35.8 6.4 33 41-73 165-199 (370)
353 PRK12823 benD 1,6-dihydroxycyc 84.6 7.9 0.00017 30.7 8.4 78 40-130 5-92 (260)
354 cd08281 liver_ADH_like1 Zinc-d 84.5 2.1 4.6E-05 36.3 5.2 39 42-80 191-233 (371)
355 PRK07326 short chain dehydroge 84.2 15 0.00033 28.5 9.7 77 41-132 4-92 (237)
356 PRK06113 7-alpha-hydroxysteroi 84.1 7.7 0.00017 30.8 8.1 82 38-132 6-98 (255)
357 PF02737 3HCDH_N: 3-hydroxyacy 84.1 2.4 5.3E-05 32.5 4.9 103 46-157 2-112 (180)
358 PRK05872 short chain dehydroge 84.0 4.3 9.4E-05 33.3 6.7 80 39-132 5-95 (296)
359 PRK08303 short chain dehydroge 83.9 7.1 0.00015 32.4 8.0 34 39-72 4-40 (305)
360 PF07669 Eco57I: Eco57I restri 83.6 8.7 0.00019 26.7 7.2 70 122-193 2-89 (106)
361 PRK06935 2-deoxy-D-gluconate 3 83.6 4.9 0.00011 32.0 6.8 79 40-131 12-100 (258)
362 PRK07890 short chain dehydroge 83.6 7.1 0.00015 30.8 7.7 79 41-132 3-92 (258)
363 PRK07062 short chain dehydroge 83.5 11 0.00024 30.0 8.8 82 40-132 5-97 (265)
364 PRK15001 SAM-dependent 23S rib 83.5 12 0.00026 32.4 9.3 100 45-163 47-146 (378)
365 PRK05866 short chain dehydroge 83.4 5.9 0.00013 32.5 7.3 82 38-132 35-127 (293)
366 PRK06181 short chain dehydroge 83.4 13 0.00028 29.5 9.1 75 44-132 2-88 (263)
367 PRK07478 short chain dehydroge 83.3 5.3 0.00012 31.6 6.8 79 41-132 4-93 (254)
368 PRK07035 short chain dehydroge 83.3 8.9 0.00019 30.2 8.1 79 40-131 5-94 (252)
369 KOG1596 Fibrillarin and relate 83.2 7.6 0.00016 31.6 7.4 36 39-74 153-191 (317)
370 PRK12481 2-deoxy-D-gluconate 3 83.2 6.1 0.00013 31.4 7.2 78 41-132 6-93 (251)
371 COG0686 Ald Alanine dehydrogen 83.2 10 0.00022 32.0 8.4 97 41-156 166-265 (371)
372 PRK08862 short chain dehydroge 83.1 6.7 0.00014 30.9 7.2 77 41-130 3-91 (227)
373 COG4221 Short-chain alcohol de 83.0 17 0.00036 29.5 9.3 79 41-134 4-93 (246)
374 PRK06172 short chain dehydroge 82.9 4 8.6E-05 32.3 5.9 79 41-132 5-94 (253)
375 PRK07985 oxidoreductase; Provi 82.8 25 0.00053 28.8 11.6 80 39-131 45-137 (294)
376 cd08239 THR_DH_like L-threonin 82.7 3.1 6.6E-05 34.6 5.4 38 42-79 163-204 (339)
377 PF04378 RsmJ: Ribosomal RNA s 82.7 4.5 9.8E-05 32.8 6.1 113 49-175 62-180 (245)
378 PRK07231 fabG 3-ketoacyl-(acyl 82.5 21 0.00046 27.8 10.7 78 41-132 3-91 (251)
379 PRK12937 short chain dehydroge 82.3 21 0.00047 27.7 10.3 79 41-132 3-93 (245)
380 PLN03154 putative allyl alcoho 82.2 4.9 0.00011 33.9 6.5 96 41-158 157-257 (348)
381 PRK06194 hypothetical protein; 82.2 4.9 0.00011 32.5 6.3 79 41-132 4-93 (287)
382 PRK05650 short chain dehydroge 82.1 18 0.00039 28.9 9.6 75 45-132 2-87 (270)
383 PRK05565 fabG 3-ketoacyl-(acyl 82.0 20 0.00043 27.9 9.6 78 41-132 3-93 (247)
384 PRK12939 short chain dehydroge 82.0 22 0.00048 27.7 10.7 77 41-131 5-93 (250)
385 COG1893 ApbA Ketopantoate redu 81.9 19 0.00041 30.1 9.8 103 45-164 2-106 (307)
386 PRK12826 3-ketoacyl-(acyl-carr 81.6 7.7 0.00017 30.3 7.1 80 41-134 4-95 (251)
387 PRK08085 gluconate 5-dehydroge 81.0 11 0.00023 29.9 7.8 79 41-132 7-96 (254)
388 PRK06720 hypothetical protein; 80.9 16 0.00034 27.6 8.3 81 41-134 14-105 (169)
389 PLN02178 cinnamyl-alcohol dehy 80.9 7.6 0.00017 33.2 7.3 32 42-73 178-211 (375)
390 PRK07066 3-hydroxybutyryl-CoA 80.9 5.4 0.00012 33.7 6.2 102 44-153 8-113 (321)
391 PRK08945 putative oxoacyl-(acy 80.7 14 0.0003 29.1 8.4 37 37-73 6-45 (247)
392 PRK07791 short chain dehydroge 80.7 11 0.00023 30.8 7.8 80 40-132 3-102 (286)
393 PRK06949 short chain dehydroge 80.6 9.2 0.0002 30.2 7.3 79 41-132 7-96 (258)
394 PRK06079 enoyl-(acyl carrier p 80.5 23 0.00049 28.1 9.6 76 41-132 5-93 (252)
395 PRK05708 2-dehydropantoate 2-r 80.3 8.7 0.00019 31.9 7.3 101 44-161 3-106 (305)
396 PRK07523 gluconate 5-dehydroge 80.1 12 0.00026 29.6 7.8 80 40-132 7-97 (255)
397 PRK08217 fabG 3-ketoacyl-(acyl 80.1 12 0.00026 29.3 7.7 78 41-131 3-91 (253)
398 PRK09291 short chain dehydroge 80.0 11 0.00024 29.7 7.6 76 43-131 2-82 (257)
399 COG4798 Predicted methyltransf 80.0 8 0.00017 30.5 6.3 27 135-161 142-168 (238)
400 PLN02253 xanthoxin dehydrogena 79.7 7.3 0.00016 31.4 6.5 80 39-132 14-104 (280)
401 PRK08416 7-alpha-hydroxysteroi 79.7 13 0.00027 29.7 7.9 80 40-131 5-96 (260)
402 PRK08277 D-mannonate oxidoredu 79.6 7.9 0.00017 31.1 6.7 79 40-131 7-96 (278)
403 PRK09242 tropinone reductase; 79.6 14 0.0003 29.3 8.0 82 40-132 6-98 (257)
404 PF05206 TRM13: Methyltransfer 79.5 2.8 6E-05 34.3 3.9 31 42-72 18-55 (259)
405 TIGR01832 kduD 2-deoxy-D-gluco 79.4 14 0.0003 29.0 8.0 78 41-132 3-90 (248)
406 PRK10309 galactitol-1-phosphat 79.3 6 0.00013 33.1 6.1 38 42-79 160-201 (347)
407 PRK08213 gluconate 5-dehydroge 79.0 15 0.00032 29.1 8.1 78 41-132 10-99 (259)
408 PF02636 Methyltransf_28: Puta 78.8 3.1 6.8E-05 33.5 4.0 39 43-81 19-67 (252)
409 TIGR03206 benzo_BadH 2-hydroxy 78.6 9.1 0.0002 30.0 6.6 77 42-131 2-89 (250)
410 PRK06114 short chain dehydroge 78.6 24 0.00051 27.9 9.1 81 40-133 5-97 (254)
411 PRK07102 short chain dehydroge 78.1 12 0.00026 29.3 7.2 75 44-130 2-84 (243)
412 PRK14106 murD UDP-N-acetylmura 77.9 44 0.00096 29.1 11.3 33 41-73 3-37 (450)
413 PRK08993 2-deoxy-D-gluconate 3 77.8 10 0.00022 30.1 6.7 79 40-132 7-95 (253)
414 PRK07831 short chain dehydroge 77.8 13 0.00029 29.5 7.5 83 39-132 13-107 (262)
415 COG0863 DNA modification methy 77.7 7.4 0.00016 31.8 6.1 48 39-86 219-267 (302)
416 PF07279 DUF1442: Protein of u 77.6 34 0.00074 27.2 9.5 103 43-163 42-152 (218)
417 PRK08340 glucose-1-dehydrogena 77.5 8.2 0.00018 30.7 6.1 73 45-131 2-85 (259)
418 PRK09072 short chain dehydroge 77.3 13 0.00027 29.6 7.2 78 41-132 3-90 (263)
419 KOG2539 Mitochondrial/chloropl 77.1 18 0.00039 32.1 8.3 110 41-161 199-317 (491)
420 PLN02514 cinnamyl-alcohol dehy 77.1 14 0.00031 31.1 7.8 31 42-72 180-212 (357)
421 PRK07904 short chain dehydroge 76.7 11 0.00025 30.0 6.7 79 42-132 7-97 (253)
422 PRK08226 short chain dehydroge 76.5 15 0.00032 29.1 7.4 78 41-132 4-92 (263)
423 PLN03209 translocon at the inn 76.3 17 0.00036 33.3 8.2 87 39-130 76-167 (576)
424 COG0541 Ffh Signal recognition 76.3 20 0.00044 31.6 8.4 108 43-165 100-227 (451)
425 PRK06138 short chain dehydroge 76.2 8.9 0.00019 30.1 6.0 78 41-132 3-91 (252)
426 PRK06500 short chain dehydroge 76.1 35 0.00076 26.6 10.0 33 41-73 4-39 (249)
427 PRK07533 enoyl-(acyl carrier p 75.8 18 0.0004 28.8 7.8 81 38-132 5-98 (258)
428 PRK06940 short chain dehydroge 75.8 38 0.00082 27.3 9.7 75 44-133 3-87 (275)
429 PRK07576 short chain dehydroge 75.7 20 0.00043 28.7 8.0 77 41-130 7-94 (264)
430 TIGR01963 PHB_DH 3-hydroxybuty 75.4 18 0.00039 28.3 7.6 75 44-132 2-88 (255)
431 COG1255 Uncharacterized protei 75.2 4.7 0.0001 28.8 3.5 87 43-159 14-102 (129)
432 cd08285 NADP_ADH NADP(H)-depen 74.6 7.1 0.00015 32.6 5.3 39 42-80 166-208 (351)
433 PF13561 adh_short_C2: Enoyl-( 74.6 9.7 0.00021 30.0 5.8 62 56-131 12-82 (241)
434 cd00401 AdoHcyase S-adenosyl-L 74.5 6.3 0.00014 34.5 4.9 89 39-160 198-290 (413)
435 PF01795 Methyltransf_5: MraW 74.4 3.8 8.3E-05 34.4 3.5 59 42-113 20-81 (310)
436 PLN02896 cinnamyl-alcohol dehy 74.2 48 0.0011 27.7 10.3 77 40-131 7-88 (353)
437 PRK12829 short chain dehydroge 74.1 15 0.00032 29.1 6.8 78 40-132 8-96 (264)
438 PRK08643 acetoin reductase; Va 74.0 22 0.00048 28.0 7.7 77 43-132 2-89 (256)
439 PRK06522 2-dehydropantoate 2-r 74.0 40 0.00088 27.4 9.5 97 45-160 2-101 (304)
440 PRK07774 short chain dehydroge 73.8 19 0.00041 28.2 7.3 79 41-132 4-93 (250)
441 KOG1208 Dehydrogenases with di 73.7 29 0.00062 29.2 8.6 87 37-134 29-126 (314)
442 COG0604 Qor NADPH:quinone redu 73.7 8.5 0.00019 32.4 5.5 96 43-160 143-242 (326)
443 PRK06197 short chain dehydroge 73.7 29 0.00062 28.4 8.6 83 39-132 12-105 (306)
444 PRK08628 short chain dehydroge 73.5 21 0.00045 28.2 7.5 79 40-132 4-93 (258)
445 PF00106 adh_short: short chai 73.2 18 0.00038 26.4 6.6 78 44-134 1-92 (167)
446 PRK07889 enoyl-(acyl carrier p 73.2 14 0.00031 29.4 6.5 76 41-132 5-95 (256)
447 PRK06249 2-dehydropantoate 2-r 73.0 18 0.00039 30.0 7.3 99 44-159 6-106 (313)
448 PRK12429 3-hydroxybutyrate deh 72.9 23 0.0005 27.7 7.6 78 41-132 2-91 (258)
449 cd08232 idonate-5-DH L-idonate 72.9 27 0.00058 28.8 8.3 93 42-158 165-261 (339)
450 PRK07984 enoyl-(acyl carrier p 72.5 49 0.0011 26.6 11.1 78 41-132 4-94 (262)
451 PF02558 ApbA: Ketopantoate re 72.5 26 0.00056 25.3 7.3 102 46-162 1-104 (151)
452 PRK08293 3-hydroxybutyryl-CoA 72.5 11 0.00024 30.9 5.8 40 44-83 4-46 (287)
453 PRK06196 oxidoreductase; Provi 72.1 19 0.00041 29.7 7.1 77 39-132 22-109 (315)
454 PRK07677 short chain dehydroge 72.1 25 0.00054 27.7 7.7 75 43-130 1-86 (252)
455 PRK00421 murC UDP-N-acetylmura 72.0 48 0.001 29.2 10.0 35 39-73 3-40 (461)
456 PRK06484 short chain dehydroge 71.9 71 0.0015 28.3 11.2 77 40-132 266-353 (520)
457 PRK08261 fabG 3-ketoacyl-(acyl 71.8 27 0.00058 30.5 8.3 33 41-73 208-243 (450)
458 PRK12367 short chain dehydroge 71.7 9.4 0.0002 30.5 5.1 79 37-132 8-89 (245)
459 PRK12921 2-dehydropantoate 2-r 71.6 50 0.0011 27.0 9.6 98 45-158 2-101 (305)
460 PRK08278 short chain dehydroge 71.6 17 0.00036 29.3 6.6 79 41-132 4-100 (273)
461 PRK07666 fabG 3-ketoacyl-(acyl 71.5 18 0.00038 28.2 6.6 77 41-131 5-93 (239)
462 cd05278 FDH_like Formaldehyde 71.5 12 0.00026 31.0 5.9 33 42-74 167-202 (347)
463 PRK05875 short chain dehydroge 71.2 18 0.0004 28.9 6.8 80 41-131 5-95 (276)
464 PF03686 UPF0146: Uncharacteri 71.1 7.4 0.00016 28.2 3.8 31 44-74 15-46 (127)
465 PF02254 TrkA_N: TrkA-N domain 71.1 31 0.00066 23.7 7.2 88 51-160 4-97 (116)
466 PF03721 UDPG_MGDP_dh_N: UDP-g 71.1 6.9 0.00015 30.1 4.0 107 45-164 2-125 (185)
467 PRK07024 short chain dehydroge 70.7 16 0.00035 29.0 6.3 76 43-132 2-88 (257)
468 PRK06182 short chain dehydroge 70.5 41 0.00089 26.8 8.7 72 42-132 2-84 (273)
469 KOG1205 Predicted dehydrogenas 70.3 20 0.00044 29.7 6.7 85 37-132 6-101 (282)
470 PRK09186 flagellin modificatio 70.1 18 0.00038 28.5 6.4 78 42-130 3-91 (256)
471 cd08237 ribitol-5-phosphate_DH 70.0 8.1 0.00017 32.4 4.5 90 41-159 162-256 (341)
472 COG3510 CmcI Cephalosporin hyd 69.8 28 0.00061 27.4 6.9 123 42-182 69-218 (237)
473 PRK08306 dipicolinate synthase 69.7 38 0.00083 28.1 8.4 36 38-73 147-184 (296)
474 PRK08220 2,3-dihydroxybenzoate 69.7 34 0.00074 26.7 7.9 71 41-132 6-86 (252)
475 PF01488 Shikimate_DH: Shikima 69.5 17 0.00036 26.3 5.6 81 40-141 9-94 (135)
476 PRK07453 protochlorophyllide o 69.5 15 0.00032 30.4 6.0 79 41-132 4-93 (322)
477 PRK06505 enoyl-(acyl carrier p 69.4 25 0.00054 28.4 7.2 33 41-73 5-42 (271)
478 COG1062 AdhC Zn-dependent alco 69.0 10 0.00023 32.3 4.8 40 42-81 185-228 (366)
479 cd01078 NAD_bind_H4MPT_DH NADP 68.9 23 0.00049 27.1 6.5 33 40-72 25-60 (194)
480 PRK06200 2,3-dihydroxy-2,3-dih 68.9 27 0.00059 27.7 7.2 76 41-132 4-90 (263)
481 PLN02214 cinnamoyl-CoA reducta 68.6 22 0.00048 29.8 6.9 79 39-131 6-90 (342)
482 PRK08251 short chain dehydroge 68.6 34 0.00074 26.7 7.7 79 43-132 2-91 (248)
483 PLN02989 cinnamyl-alcohol dehy 68.6 21 0.00045 29.4 6.7 78 42-131 4-86 (325)
484 cd01492 Aos1_SUMO Ubiquitin ac 68.4 20 0.00044 27.8 6.2 33 40-72 18-53 (197)
485 cd08293 PTGR2 Prostaglandin re 68.4 12 0.00027 31.0 5.3 37 44-80 156-197 (345)
486 PRK07454 short chain dehydroge 68.3 32 0.00068 26.8 7.4 78 42-132 5-93 (241)
487 TIGR02354 thiF_fam2 thiamine b 68.3 54 0.0012 25.5 8.7 34 40-73 18-54 (200)
488 COG1743 Adenine-specific DNA m 68.1 6.6 0.00014 37.0 3.7 41 41-81 89-130 (875)
489 PRK12744 short chain dehydroge 68.1 58 0.0012 25.7 10.5 79 41-132 6-99 (257)
490 PRK06841 short chain dehydroge 68.1 20 0.00042 28.3 6.2 76 41-132 13-99 (255)
491 PRK05599 hypothetical protein; 68.0 29 0.00062 27.4 7.2 76 45-133 2-88 (246)
492 PRK13394 3-hydroxybutyrate deh 67.9 23 0.0005 27.9 6.6 79 41-132 5-94 (262)
493 PRK03659 glutathione-regulated 67.8 40 0.00088 30.9 8.9 95 44-160 401-499 (601)
494 PLN02662 cinnamyl-alcohol dehy 67.7 21 0.00045 29.3 6.5 77 42-130 3-84 (322)
495 PRK07201 short chain dehydroge 67.5 20 0.00044 32.7 7.0 80 40-132 368-458 (657)
496 TIGR02632 RhaD_aldol-ADH rhamn 67.5 22 0.00048 33.1 7.1 86 37-133 408-504 (676)
497 cd08233 butanediol_DH_like (2R 67.5 15 0.00033 30.6 5.7 38 42-79 172-213 (351)
498 PRK06914 short chain dehydroge 67.2 42 0.00091 26.8 8.1 80 42-132 2-91 (280)
499 PRK05717 oxidoreductase; Valid 66.8 33 0.00072 27.0 7.3 78 39-132 6-94 (255)
500 PF04072 LCM: Leucine carboxyl 66.6 11 0.00024 28.7 4.3 44 44-87 80-125 (183)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.86 E-value=8e-22 Score=151.45 Aligned_cols=154 Identities=37% Similarity=0.567 Sum_probs=99.2
Q ss_pred eEEEeecCcceeeccccccccC-ccCCCCCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhc
Q 029065 13 VINLEVLGHQLQFSQEKNCRKG-RFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSR 89 (199)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~ 89 (199)
.++..+|+..+.++.+...... .+++..+++++|||||||+|+.|+.+++. +++|++||++++++.++.|+..|+.
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~- 93 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGS- 93 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccc-
Confidence 5677788888887766332111 13567889999999999999999999998 5679999997799999999999862
Q ss_pred cccCCCCCCCCCcEEEEEeeeCCCccccc-cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHH
Q 029065 90 ISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE 168 (199)
Q Consensus 90 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~ 168 (199)
....++.+..++|++...... ...+||+|+++|++|..+.++.++.++.+++++++.++++.+.|... ..
T Consensus 94 --------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~ 164 (173)
T PF10294_consen 94 --------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQ 164 (173)
T ss_dssp --------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG-GC
T ss_pred --------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHH-HH
Confidence 114578999999987432222 23589999999999999999999999999999999999999988553 36
Q ss_pred HHHHHHHh
Q 029065 169 QMLQMWKS 176 (199)
Q Consensus 169 ~~~~~~~~ 176 (199)
.|++++.+
T Consensus 165 ~F~~~~~k 172 (173)
T PF10294_consen 165 EFFDRLKK 172 (173)
T ss_dssp HHHHHH--
T ss_pred HHHHHhhh
Confidence 68777643
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.80 E-value=3.8e-19 Score=140.32 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=92.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.|++|||+|||.|.++..+|+.|+.|+++|.++ .++.|+..+..++.. +++.....+ ++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-------------i~y~~~~~e---dl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-------------IDYRQATVE---DLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-------------ccchhhhHH---HHHhc
Confidence 7899999999999999999999999999999965 999999998888742 333332222 22222
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
.++||+|++.+++.|.++++.+++.|.+++||||.+++++.+|+..
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 3799999999999999999999999999999999999999998764
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=5e-17 Score=115.39 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=83.7
Q ss_pred CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||||||+|..++.+++ .+++|+++|++ ++++.+++++...+. ..++++.+.|+ .. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence 478999999999999999999 78899999995 599999999855532 56899999888 11 122
Q ss_pred cCCCccEEEEec-cccC---CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~-~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..++||+|++.. +..+ ......+++.+.+.|+|||.+++..
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 345799999998 3321 2467889999999999999999875
No 4
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=4.3e-16 Score=116.93 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=92.3
Q ss_pred CCCcEEEeCCCcChHHHHHH-hh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la-~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..++ .. +++|+++|+++ +++.|+..+..++ ..++++.+.|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~------------~~ni~~~~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG------------LDNIEFIQGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT------------STTEEEEESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc------------ccccceEEeehhccccc-
Confidence 46899999999999999999 43 67899999955 9999999988876 34899999998763221
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
. .+.||+|+++.++++..+...+++.+.++|+++|.+++........
T Consensus 70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1 2789999999999999999999999999999999999999884443
No 5
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.70 E-value=2.5e-17 Score=131.13 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.|++|||+|||+|++|..||+.|++|+|+|.++ +++.|++....+-.. ..+..-++++...+.+..
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~------~~~~~y~l~~~~~~~E~~----- 155 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL------EGAIAYRLEYEDTDVEGL----- 155 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh------ccccceeeehhhcchhhc-----
Confidence 34578899999999999999999999999999955 999998874333110 000011244444333222
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
.+.||.|++++++.|..+++.+++.+.++|+|+|.++|++.+|.-
T Consensus 156 -~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 156 -TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred -ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 356999999999999999999999999999999999999988753
No 6
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.70 E-value=5.8e-16 Score=118.57 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=84.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++++|||||||+|.+++.+++.+.. |+++|+++ +++.+++|+..|+. +.+++...|+....
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------------~~v~~~~~d~~~~~---- 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------------ENVEVVQSDLFEAL---- 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------------TTEEEEESSTTTTC----
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------------cccccccccccccc----
Confidence 5779999999999999999998765 99999955 99999999999974 23788887775332
Q ss_pred cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
..++||+|++++|++... ....++....++|+|||.+++......
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 257999999999977644 378899999999999999988776543
No 7
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.68 E-value=1.8e-15 Score=116.57 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=99.2
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++++|||+|||+|.+++.++..+.+|+++|++ ++++.+++|+..++. ++++...|+... .
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~-----~ 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-------------GLDVVMTDLFKG-----V 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEcccccc-----c
Confidence 456789999999999999999988899999995 599999999987642 467777776432 1
Q ss_pred CCCccEEEEeccccCCcC---------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhC
Q 029065 120 APPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN 177 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~---------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~ 177 (199)
.++||+|++++++++... ...+++.+.++|+|||.+++........ ..+.+.+ ..+
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~--~~~~~~l~~~g 157 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE--PDTFDKLDERG 157 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh--HHHHHHHHhCC
Confidence 358999999988764321 4678999999999999998887655421 3444444 358
Q ss_pred CeEEEecCCCcCc
Q 029065 178 FNVKLVPKAKEST 190 (199)
Q Consensus 178 ~~v~~~~~~~~~~ 190 (199)
|+++.+.....+-
T Consensus 158 f~~~~~~~~~~~~ 170 (179)
T TIGR00537 158 FRYEIVAERGLFF 170 (179)
T ss_pred CeEEEEEEeecCc
Confidence 9998888776653
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.67 E-value=5.5e-16 Score=129.55 Aligned_cols=109 Identities=17% Similarity=0.280 Sum_probs=90.2
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||||||+|.++..+++.|++|+++|.+ ++++.|+.+...... ..++++.+.+..+ ....
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~dae~---l~~~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTAEK---LADE 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCHHH---hhhc
Confidence 467899999999999999999999999999995 599999987655431 2367777766532 2233
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
.++||+|++.++++|..+...+++.+.++|+|||.+++++..+.
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 56899999999999999999999999999999999999987654
No 9
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=122.41 Aligned_cols=126 Identities=25% Similarity=0.316 Sum_probs=100.0
Q ss_pred CCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++|||||||+|.+++.+|.+ . ++++++|+. ++.+.|++|++.|.+ .+++++.+.|+.+..... .
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~ 112 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-V 112 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-c
Confidence 679999999999999999977 4 679999995 599999999999854 679999999987554322 1
Q ss_pred CCCccEEEEeccccCCc------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeE
Q 029065 120 APPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNV 180 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v 180 (199)
..+||+|++|+|+|... .++++++...++|+|+|.++++.+... ...+...++. +|++
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er---l~ei~~~l~~~~~~~ 189 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER---LAEIIELLKSYNLEP 189 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH---HHHHHHHHHhcCCCc
Confidence 23799999999997632 489999999999999999999887533 3456666655 6666
Q ss_pred EEe
Q 029065 181 KLV 183 (199)
Q Consensus 181 ~~~ 183 (199)
+++
T Consensus 190 k~i 192 (248)
T COG4123 190 KRI 192 (248)
T ss_pred eEE
Confidence 443
No 10
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.63 E-value=1.2e-14 Score=112.49 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=95.2
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+++.+|||+|||+|..++.++..+ ++|+++|.++ +++.+++++..++ ..++++.+.|+.+.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~------------~~~i~~i~~d~~~~---- 104 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG------------LNNVEIVNGRAEDF---- 104 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC------------CCCeEEEecchhhc----
Confidence 458899999999999999988664 5699999955 9999999887775 23688888887643
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCCCcC
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES 189 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 189 (199)
...++||+|+++. ...+..+++.+.++|+|||.+++..............+.+ ..++++....+-.+|
T Consensus 105 ~~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 105 QHEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred cccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 1256899999875 2467788999999999999988876544333233333332 347887766665555
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.63 E-value=3.9e-15 Score=120.92 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=89.6
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|..+..++..|.+|+++|++ ++++.|++++...+. ..++++.+.|..+.. ....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~--~~~~ 110 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIA--QHLE 110 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHh--hhcC
Confidence 46799999999999999999999999999995 599999998877643 346777777765332 1235
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+.||+|++..++++..++..++..+.++|+|||.+++.....
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 689999999999998899999999999999999998876543
No 12
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.6e-15 Score=121.67 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=94.2
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
..+|++|||+|||+|.+++.++++|+. |+++|+.+ +++.++.|+.+|+.. ..+.....+ ... .
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----------~~~~~~~~~---~~~-~ 224 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----------LLVQAKGFL---LLE-V 224 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----------hhhhccccc---chh-h
Confidence 347899999999999999999999997 99999966 999999999999752 111111111 111 1
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCC
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 186 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 186 (199)
...++||+|++|= -..-+..+...+.++++|||.++++.-.... .+.+.+.+ ..+|.+..+..+
T Consensus 225 ~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 225 PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence 2246999999982 2344668889999999999999999876544 35666776 568988655443
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=8.7e-15 Score=114.61 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=81.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++. .++++...|+.... ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~ 93 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD 93 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence 567999999999999999999999999999955 99999998876652 35677777764332 14
Q ss_pred CCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065 121 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i 157 (199)
+.||+|+++.++++. .....+++.+.++|+|||.+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 579999999888763 3688999999999999998544
No 14
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.62 E-value=3.6e-15 Score=123.03 Aligned_cols=121 Identities=24% Similarity=0.386 Sum_probs=88.1
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
..+|++|||+|||||.+++.++++|++ |+++|+++ +++.|++|+..|+.. .++.+. ...+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----------~~~~v~----~~~~--- 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----------DRIEVS----LSED--- 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----------TCEEES----CTSC---
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----------eeEEEE----Eecc---
Confidence 346889999999999999999999996 99999954 999999999999863 344332 1111
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEe
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 183 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 183 (199)
...++||+|++|=. ...+..++..+.++++|+|.++++.-..... ..+.+.+.++|++...
T Consensus 221 ~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~--~~v~~a~~~g~~~~~~ 281 (295)
T PF06325_consen 221 LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILSGILEEQE--DEVIEAYKQGFELVEE 281 (295)
T ss_dssp TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGH--HHHHHHHHTTEEEEEE
T ss_pred cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEccccHHHH--HHHHHHHHCCCEEEEE
Confidence 12479999999822 2345677788888999999999998876542 4555666568877443
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=3.6e-15 Score=102.04 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=75.9
Q ss_pred EEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCcc
Q 029065 47 IELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 124 (199)
Q Consensus 47 LdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 124 (199)
||+|||+|..+..++.. +.+|+++|+++ +++.+++..... .+.+...|..+ .+..++.||
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~---l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDAED---LPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBTTS---SSS-TT-EE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehHHh---Ccccccccc
Confidence 89999999999999998 78899999955 899888876544 34566666543 345578999
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i 157 (199)
+|++..++++.++...+++.+.++|+|||.++|
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999999999999999876
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=1.7e-14 Score=115.30 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=91.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+|.+|||+|||||-.++.+++.. ++|+++|+++ ||+.+++.+...+. ..+++...|. +.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~~dA---e~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVVGDA---ENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEEech---hhCCC
Confidence 78999999999999999999875 5799999965 99999999876542 2378888666 45567
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
+++.||++.++-.+.+..+++.+|+.+.|+|+|||++++..-...
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 789999999999999999999999999999999998877766543
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.60 E-value=1.2e-14 Score=122.66 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=89.0
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.++.+|||||||+|..+..++.. |++|+++|+++ +++.+++++..++. ..++++...|..+. +.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PF 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CC
Confidence 45689999999999999999975 78999999955 99999988877653 34688888776543 33
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.++.||+|++..+++|..+...+++.+.++|+|||.++|++.
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 467899999999999999999999999999999999998764
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=3.5e-14 Score=110.21 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=83.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|..++.+++. +++|+++|.++ +++.|++++..++. +++++...|..+.. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~~---~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEFG---Q 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhCC---C
Confidence 3789999999999999988863 56899999955 99999999988863 35888887775432 2
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
.++||+|+++. ...+..+++.+.++|+|||.+++.......
T Consensus 110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~ 150 (187)
T PRK00107 110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE 150 (187)
T ss_pred -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH
Confidence 56899999875 256889999999999999999888655433
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=1.5e-14 Score=113.06 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++. .+.....|+... . ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~ 92 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN 92 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence 457999999999999999999999999999955 99999888776642 255555554321 1 23
Q ss_pred CCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEE
Q 029065 121 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
++||+|+++.++++. .....+++.+.++|+|||.+++.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999888764 46789999999999999986554
No 20
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.59 E-value=2.8e-14 Score=114.48 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+|.+|||+|||||.++..+++. + .+|+++|+++ |++.+++++...+ ..++++.+.|.. .
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~------------~~~i~~v~~da~---~ 109 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG------------LQNIEFVQGDAE---D 109 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE-BTT---B
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC------------CCCeeEEEcCHH---H
Confidence 346789999999999999999875 3 4799999965 9999999988765 237888887764 3
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
++..++.||+|.++-.+.+..+....++.+.++|+|||.+.+.+-.+..
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 4456789999999988888899999999999999999999888776544
No 21
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4e-14 Score=115.70 Aligned_cols=128 Identities=20% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.+|||+|||.|.+|+.+++... +++++|.+. +++.+++|+..|+.. ...+...|..+ ..
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~------------~~~v~~s~~~~-----~v 221 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE------------NTEVWASNLYE-----PV 221 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC------------ccEEEEecccc-----cc
Confidence 34999999999999999999865 699999976 999999999999742 32333333321 12
Q ss_pred CCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCe-EEEecCCCcCccc
Q 029065 120 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN-VKLVPKAKESTMW 192 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 192 (199)
.++||.||+|+|++... ....++....+.|++||.++|+.. +... .+ ..+.+-|. ++.+++.+--..|
T Consensus 222 ~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~-y~---~~L~~~Fg~v~~la~~~gf~Vl 295 (300)
T COG2813 222 EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN-RHLP-YE---KKLKELFGNVEVLAKNGGFKVL 295 (300)
T ss_pred cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCC-hH---HHHHHhcCCEEEEEeCCCEEEE
Confidence 34899999999998633 244789999999999999999888 3332 22 33333343 5665555443333
No 22
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=6.1e-14 Score=115.88 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=82.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++. ++++...|..... .
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~ 181 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----I 181 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----c
Confidence 3566999999999999999999999999999955 99999998877652 4666666654321 2
Q ss_pred CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065 120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.++||+|+++.++++. .....+++.+.++|+|||.+++..
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5689999999888763 478899999999999999966543
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=8e-14 Score=118.68 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=94.9
Q ss_pred ceEEEeecCcceeeccccccccC----------c-cCCCCCCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHH
Q 029065 12 SVINLEVLGHQLQFSQEKNCRKG----------R-FCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLP 77 (199)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~ 77 (199)
..+...+.+..+++....++-+. . .-|.. .+.+|||||||+|.+++.+++.+ ++|+++|.++ +++
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~ 266 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVA 266 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCCCCcChHHHHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 44566677777777766543111 0 11111 23589999999999999999874 5799999965 999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC-----cChHHHHHHHHHhcCCC
Q 029065 78 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPK 152 (199)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~ 152 (199)
.+++|++.|+.. ...++++...|.... ....+||+|+++++++.. .....++....++|+||
T Consensus 267 ~A~~N~~~n~~~---------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 267 SSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred HHHHHHHHcCcc---------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 999999888521 122566665554321 123579999999998653 23567888899999999
Q ss_pred cEEEEEEE
Q 029065 153 TTILLGYE 160 (199)
Q Consensus 153 g~i~i~~~ 160 (199)
|.++++..
T Consensus 334 G~L~iV~n 341 (378)
T PRK15001 334 GELYIVAN 341 (378)
T ss_pred CEEEEEEe
Confidence 99999863
No 24
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.5e-14 Score=117.80 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=90.4
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+-+|++|||||||.|.+++.+|+. |.+|+|+++++ ..+.+++.+...++ ..++++...||.+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~--- 134 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF--- 134 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence 4456899999999999999999987 89999999965 99999999988875 34789999999755
Q ss_pred cccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 117 KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.++||-|++.+.+-+ ...++.++..+.++|+|||.+++-.-.
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence 345999999999987 455999999999999999987665543
No 25
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.57 E-value=8.7e-14 Score=111.45 Aligned_cols=168 Identities=31% Similarity=0.382 Sum_probs=118.7
Q ss_pred EEEeecCcceeeccccccccCc----cCCCCC--CCCcEEEeCCCcChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHh
Q 029065 14 INLEVLGHQLQFSQEKNCRKGR----FCPSKL--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWN 86 (199)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~ 86 (199)
....+|.+.-++++....++.. .+-..+ +.++|||||+|||+.|+.+|. .++.|+.+|.+..++....|...|
T Consensus 52 ~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~ 131 (248)
T KOG2793|consen 52 ISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN 131 (248)
T ss_pred eeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh
Confidence 4555677666666654433331 111122 356799999999999999998 688899999987777776666555
Q ss_pred hhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC-ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 87 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
+.... .-...+.+..++|++........+. ||+|++++++|.++....++.++..+|..++.++++++.|...
T Consensus 132 ~~~l~------~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~ 205 (248)
T KOG2793|consen 132 NIALN------QLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDA 205 (248)
T ss_pred hhhhh------hcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccch
Confidence 43210 1123788999999988766555555 9999999999999999999999999999999999999988764
Q ss_pred HHHH---HHHHHHhCCeEEEecCCC
Q 029065 166 VHEQ---MLQMWKSNFNVKLVPKAK 187 (199)
Q Consensus 166 ~~~~---~~~~~~~~~~v~~~~~~~ 187 (199)
..+. +.++....+++......+
T Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (248)
T KOG2793|consen 206 AWEIEVLLFKKDLKIFDVVQESFFK 230 (248)
T ss_pred HHHHHHHHhhhhhccceeeeEeccC
Confidence 3332 333334456664444333
No 26
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.56 E-value=4.9e-14 Score=109.33 Aligned_cols=103 Identities=24% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+++.++||||||.|..+++||+.|..|+++|.+. +++.+++.++..++ .|+....|+....
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD---- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence 34677999999999999999999999999999965 99988887777654 4788888875442
Q ss_pred cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..+.||+|++.-++++ .+..+.+++.++..++|||.+++..
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 2468999998766654 6678899999999999999877743
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.56 E-value=2.2e-14 Score=117.56 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=81.8
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
..-+|.+|||||||.|.+++.+|+. |++|+++.+++ ..+.+++.+...++ ...+++...|+.+.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~--- 124 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL--- 124 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG----
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc---
Confidence 4456889999999999999999987 99999999965 88899998887764 45788888888633
Q ss_pred cccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 117 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..+||.|++.+++.|. .++..+++.+.++|+|||.+++-.-.
T Consensus 125 ---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 125 ---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3499999999999886 68899999999999999998876543
No 28
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=1.4e-13 Score=109.76 Aligned_cols=126 Identities=21% Similarity=0.301 Sum_probs=91.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++.+|||+|||+|.+++.+++.++ +|+++|++. +++.+++|+..++. ++.+...|+... ..
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------------~~~~~~~d~~~~----~~ 98 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-------------DVDVRRGDWARA----VE 98 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------------eeEEEECchhhh----cc
Confidence 467999999999999999998876 799999955 99999999887752 456666666432 12
Q ss_pred CCCccEEEEeccccCCcC---------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hC
Q 029065 120 APPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN 177 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~---------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~ 177 (199)
.+.||+|+++++++.... +..++..+.++|++||.+++....... ...+++.+. .+
T Consensus 99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g 176 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAG 176 (223)
T ss_pred CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCC
Confidence 468999999987654321 466788899999999999887654422 234444443 46
Q ss_pred CeEEEecCC
Q 029065 178 FNVKLVPKA 186 (199)
Q Consensus 178 ~~v~~~~~~ 186 (199)
|.++.....
T Consensus 177 ~~~~~~~~~ 185 (223)
T PRK14967 177 LDAEVVASQ 185 (223)
T ss_pred CCeEEEEee
Confidence 666555443
No 29
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=1.5e-13 Score=112.03 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=86.6
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..++.. + .+|+++|+++ |++.|+++...... ....++++...|..+. +
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~~l---p 140 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDATDL---P 140 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccccC---C
Confidence 5679999999999999988875 4 4799999955 99999876542110 0134678888776533 3
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
..++.||+|+++..+++..++..+++.+.++|+|||.+++.+....
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 4467899999999999999999999999999999999988876543
No 30
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.54 E-value=2.2e-14 Score=102.57 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=83.5
Q ss_pred CCcEEEeCCCcChHHHHHHhhC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALLG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
|.+|||+|||+|...+.+++.+ .+++++|+++ +++.++.++..++. ..++++...|+.... .....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~-~~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLP-EPLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHH-HTCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhch-hhccC
Confidence 5689999999999999999998 7799999954 99999999988754 347899998885442 11345
Q ss_pred CCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 121 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
++||+|++++++.... ....+++.+.++|+|+|.+++..+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7899999999987521 357889999999999999988764
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=8.1e-14 Score=116.85 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
..+|++|||||||+|..+..++..|+. |+++|.+. ++..++......+ ...++.+...++.+. +
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----------~~~~i~~~~~d~e~l---p 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----------NDQRAHLLPLGIEQL---P 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----------CCCCeEEEeCCHHHC---C
Confidence 357899999999999999999988875 99999865 6544332211111 023577777776533 2
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
. .+.||+|++..++||..++..+++.+.+.|+|||.+++...
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 2 56899999999999999999999999999999999988753
No 32
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.54 E-value=1.4e-13 Score=113.80 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=89.4
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.|++|+..|+. ...+.....+. ...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----------~~~~~~~~~~~-----~~~ 221 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----------SDRLQVKLIYL-----EQP 221 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEeccc-----ccc
Confidence 4678999999999999999998887 599999955 99999999988864 22344433321 112
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 184 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~ 184 (199)
..++||+|+++-. ...+..++..+.++|+|||.++++...... ...+.+.+...|.+..+.
T Consensus 222 ~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~~--~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 222 IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILETQ--AQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHhH--HHHHHHHHHccCceeeEe
Confidence 2568999999743 234568899999999999999998765433 244555555557665443
No 33
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=110.73 Aligned_cols=116 Identities=26% Similarity=0.347 Sum_probs=97.8
Q ss_pred cccCccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe
Q 029065 31 CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL 108 (199)
Q Consensus 31 ~~~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 108 (199)
.++...+|..++||+|||+|+|+|+.++..++.|+. |+.+|+.. ....++.|+..|+. .+.+...
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~ 134 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHA 134 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeec
Confidence 477788999999999999999999999999999998 99999955 77788889988864 4566665
Q ss_pred eeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 109 DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 109 d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
|... .++.||+|+++|++|.......++.+..++...|-.+++.++.|..-
T Consensus 135 d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 135 DLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred cccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 5542 35689999999999999999999997777777777888888888653
No 34
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.1e-13 Score=112.17 Aligned_cols=104 Identities=22% Similarity=0.325 Sum_probs=82.4
Q ss_pred cEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 45 RVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
+|||||||||.+++.++..+. +|+++|++. +++.|++|+..+++ .++.....||... ..+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~-----~~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEP-----LRG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeecccc-----cCC
Confidence 799999999999999998876 799999955 99999999999973 3555555577533 245
Q ss_pred CccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 122 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
+||+|++|+|+-..+ .+..++....++|+|+|.+++........
T Consensus 176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~ 244 (280)
T COG2890 176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGE 244 (280)
T ss_pred ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHH
Confidence 999999999985432 36778888889999998877766644443
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.53 E-value=1.1e-13 Score=115.26 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
...+|++|||+|||+|..+..++..|+. |+|+|.+. ++.+++........ ..++.+..+++.+..
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-----------~~~v~~~~~~ie~lp-- 184 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-----------DKRAILEPLGIEQLH-- 184 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----------CCCeEEEECCHHHCC--
Confidence 4567899999999999999999888875 99999965 77654332221110 235566666554332
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
. ...||+|++..++||..++..+++.+++.|+|||.+++...
T Consensus 185 -~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 -E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred -C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 2 34899999999999999999999999999999999998754
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=9.9e-14 Score=112.27 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|..+..++..|.+|+++|+++ +++.++++.. ...+...|+... +..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----------------~~~~~~~d~~~~---~~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----------------ADHYLAGDIESL---PLAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCCEEEcCcccC---cCCC
Confidence 467899999999999999998899999999955 9888877632 124455555432 2345
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+.||+|+++.++.+..++..++..+.++|+|||.++++....
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 689999999999988999999999999999999999987553
No 37
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.53 E-value=1.5e-13 Score=125.82 Aligned_cols=138 Identities=20% Similarity=0.150 Sum_probs=106.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+|++|||+|||+|..++.++..|+. |+++|+++ +++.|++|+..|+.. ..++++.+.|..+.. ..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~ 604 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KE 604 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HH
Confidence 46899999999999999999998886 99999965 999999999999742 136888888864321 11
Q ss_pred cCCCccEEEEeccccCCc-----------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCC
Q 029065 119 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 186 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~-----------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 186 (199)
..++||+|++++|.+... ++.+++..+.++|+|||.++++...+..... .+.+ ..++.+..+...
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAK 681 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecC
Confidence 246899999998876432 3567888889999999999887765544322 2333 458999999999
Q ss_pred CcCcccC
Q 029065 187 KESTMWG 193 (199)
Q Consensus 187 ~~~~~~~ 193 (199)
..+++|-
T Consensus 682 ~~~~Dhp 688 (702)
T PRK11783 682 TLPPDFA 688 (702)
T ss_pred CCCCCCC
Confidence 9988873
No 38
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.53 E-value=1.3e-13 Score=103.36 Aligned_cols=100 Identities=23% Similarity=0.229 Sum_probs=80.3
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
..++++|||||||+|..+..++..|.+|+++|+++ +++. . .+.....+.. ....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~----------------~~~~~~~~~~---~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R----------------NVVFDNFDAQ---DPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T----------------TSEEEEEECH---THHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h----------------hhhhhhhhhh---hhhc
Confidence 46788999999999999999999999999999955 6655 1 1222222211 2223
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
..+.||+|+++.++++..++..+++.+.++|+|||.++++.+.+..
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 4679999999999999999999999999999999999999998753
No 39
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=117.44 Aligned_cols=143 Identities=20% Similarity=0.102 Sum_probs=107.6
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~ 116 (199)
..+|++||++.|-||..|+++|..|| +||.+|.+. +++.|++|+++|++. ..++.+.+.|....-. .
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHH
Confidence 34599999999999999999999999 699999966 999999999999863 3456666666532211 1
Q ss_pred cccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecChh--H-HHHHHHHH-HhCCeEEEe
Q 029065 117 KAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTS--V-HEQMLQMW-KSNFNVKLV 183 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~-~~~~~~~~-~~~~~v~~~ 183 (199)
.....+||+|+..||-|..+ ++.+++..+.++|+|||+++++...+.-. . .+...+.. ..+.....+
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 11234899999999887632 57888999999999999999998876543 2 22222333 345777888
Q ss_pred cCCCcCccc
Q 029065 184 PKAKESTMW 192 (199)
Q Consensus 184 ~~~~~~~~~ 192 (199)
....+++++
T Consensus 365 ~~~~~~~D~ 373 (393)
T COG1092 365 EGEGQPPDH 373 (393)
T ss_pred eccCCCCCc
Confidence 888888877
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=3.7e-13 Score=104.36 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+|||+|||+|.+++.+++.+ .+|+++|.+ .+++.+++|+..++. .++++...|... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~ 93 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E 93 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence 57799999999999999999874 479999995 599999999987752 356766655421 1
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..++||+|+++... ..+..++..+.+.|+|||.+++....
T Consensus 94 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 94 LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 23579999987543 35678999999999999999886643
No 41
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=4.7e-13 Score=103.22 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=92.9
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++++|||+|||+|..+..++..+.+|+++|+++ +++.+++++..++.. ...+.+...|+.... .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~----~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR----------NNGVEVIRSDLFEPF----R 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEeccccccc----c
Confidence 3678999999999999999998888999999954 999999998776531 112677777765321 2
Q ss_pred CCCccEEEEeccccCC---------------------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hC
Q 029065 120 APPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN 177 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~---------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~ 177 (199)
...||+|+++++++.. ..+..+++.+.++|+|+|.+++....... .+.+.+.+. .+
T Consensus 88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~l~~~~~~~g 165 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDEVLEYLEKLG 165 (188)
T ss_pred ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHHHHHHHHHCC
Confidence 3479999999886541 12566899999999999998877654322 133444443 47
Q ss_pred CeEEEecC
Q 029065 178 FNVKLVPK 185 (199)
Q Consensus 178 ~~v~~~~~ 185 (199)
|++..+..
T Consensus 166 ~~~~~~~~ 173 (188)
T PRK14968 166 FEAEVVAE 173 (188)
T ss_pred Ceeeeeee
Confidence 87766544
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=1.7e-13 Score=120.46 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=86.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++.+|||||||+|.+++.++.. +++|+++|+++ +++.|+++.... ..++++...|+.... ..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~~---~~ 329 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKKT---YP 329 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccCC---CC
Confidence 4679999999999999988865 77899999954 999998876432 236788887775432 23
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.++||+|++..+++|..+...+++.+.++|+|||.+++.+..+
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 4689999999999999999999999999999999999987654
No 43
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=3.4e-13 Score=107.68 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=85.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++|||+|||+|..+..++.. +.+|+++|++ ++++.+++++...+ ..++++...|.... .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~---~ 109 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG------------LHNVELVHGNAMEL---P 109 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC------------CCceEEEEechhcC---C
Confidence 4789999999999999998865 3579999995 59999999876554 34677777776533 2
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
...++||+|+++.++.+..+...+++.+.++|+|||.+++....
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 23568999999988888889999999999999999999887653
No 44
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.51 E-value=3.4e-13 Score=115.81 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=101.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~ 117 (199)
.++++|||+|||+|..++.++..|+ +|+++|.++ +++.|++|+..|+.. ..++++...|+.+... ..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~ 288 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYR 288 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHH
Confidence 4688999999999999998887777 699999955 999999999999742 1367888877753311 11
Q ss_pred ccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecC--hhHHHHHH-HHH-HhCCeEEEec
Q 029065 118 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQML-QMW-KSNFNVKLVP 184 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~--~~~~~~~~-~~~-~~~~~v~~~~ 184 (199)
...++||+|++++|.+... .+..++....++|+|||.++++..... .+.+..+. +.. ..+-++..+.
T Consensus 289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 1245799999998876543 356667778899999999887655322 22222222 222 2355666666
Q ss_pred CCCcCccc----CCCCCCC
Q 029065 185 KAKESTMW----GNPLGLY 199 (199)
Q Consensus 185 ~~~~~~~~----~~~~~~~ 199 (199)
....++++ .-++|.|
T Consensus 369 ~~~~~~DhP~~~~~pe~~Y 387 (396)
T PRK15128 369 QFRQAADHPVIATYPEGLY 387 (396)
T ss_pred EcCCCCCCCCCCCCCCcCC
Confidence 66665544 2355555
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=110.82 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.++.+|||||||+|.++..++.. +.+|+++|+++ +++.+++. .+++...|..+. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~---~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRDW---K 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhhC---C
Confidence 35689999999999999999987 67899999955 88888652 235555555422 1
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
..++||+|+++.++++..++..+++.+.+.|+|||.+++..+
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 246899999999999989999999999999999999988754
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=112.30 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++.+|||||||+|..+..++.. +++|+++|+++ +++.++++.... .++.+...|+... +..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~~~---~~~ 114 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDILKK---DFP 114 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcccC---CCC
Confidence 5679999999999988888764 77899999955 889888765321 2577777776532 233
Q ss_pred CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.++||+|++.++++|.. +...+++.+.++|+|||.+++++..
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 57899999998887754 8899999999999999999998764
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.50 E-value=5.3e-15 Score=102.97 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=60.1
Q ss_pred EEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-CCC
Q 029065 47 IELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APP 122 (199)
Q Consensus 47 LdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~ 122 (199)
||+|||+|..+..+... ..+|+++|+++ +++.+++++..... ..... ..+...+..... .++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFER--LRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EEE--EE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------cceeE--EEeecCChhhcccccc
Confidence 79999999999888877 67799999965 98888887766541 12222 222222211111 259
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEE
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 155 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i 155 (199)
||+|+++.++++.+++..+++.+.++|+|||.+
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999975
No 48
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.50 E-value=6.6e-14 Score=115.92 Aligned_cols=108 Identities=18% Similarity=0.184 Sum_probs=90.8
Q ss_pred ccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
..|+.+|++|.|||+|||+|.+|++.|+.|++ |+++|-+++.+.|++.+..|++ ...|++.....++.
T Consensus 53 ~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 53 LQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI 121 (346)
T ss_pred hcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE
Confidence 45889999999999999999999999999997 9999999988999999998875 34677777666544
Q ss_pred ccccccCCCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEE
Q 029065 114 DHIKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTIL 156 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~ 156 (199)
. + +.++.|+|++-.+-|+ .+++..++.+..+.|+|||.+|
T Consensus 122 ~-L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 E-L--PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred e-c--CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 2 2 2578999998766554 7899999999999999998643
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.50 E-value=3.3e-13 Score=113.89 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred CcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+|||||||+|.+++.+++.+ .+|+++|++. +++.+++++..|+. ..++...|... ...
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~ 259 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-------------EGEVFASNVFS-----DIK 259 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCEEEEccccc-----ccC
Confidence 479999999999999999875 4799999965 99999999988863 22344444321 125
Q ss_pred CCccEEEEeccccCC-----cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 121 PPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
++||+|+++++++.. .....++....++|+|||.++|+...
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 689999999988652 34688999999999999999887754
No 50
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=5.5e-13 Score=109.18 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=84.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||||||+|..++.+++. +. +|+++|++ ++++.|+++....+ ..++++...|+... +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g------------~~~v~~~~~d~~~l---~ 141 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG------------YTNVEFRLGEIEAL---P 141 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC------------CCCEEEEEcchhhC---C
Confidence 6789999999999988877754 44 59999995 59999999887665 23677777776533 2
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
..++.||+|+++.++++..+...+++.+.++|+|||.++++..
T Consensus 142 ~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 142 VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3356899999999888888899999999999999999998764
No 51
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.49 E-value=7.4e-13 Score=107.44 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred CCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.+|||+|||+|.+++.++.. +.+|+++|++ .+++.|++|+..++ +++.+.|+.+... ...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------------~~~~~~D~~~~l~-~~~ 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------------GTVHEGDLYDALP-TAL 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------------CEEEEeechhhcc-hhc
Confidence 458999999999999999865 4579999995 59999999998763 2566677653211 111
Q ss_pred CCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065 120 APPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 173 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~ 173 (199)
.++||+|++++|+.... .+..++....++|+|+|.+++....... ..+...
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---~~v~~~ 227 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---PLAVEA 227 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH---HHHHHH
Confidence 35799999999875321 1457888888999999999988765433 234444
Q ss_pred HH-hCCeEEEecCCCc
Q 029065 174 WK-SNFNVKLVPKAKE 188 (199)
Q Consensus 174 ~~-~~~~v~~~~~~~~ 188 (199)
+. .+|....+....+
T Consensus 228 l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 228 FARAGLIARVASSEEL 243 (251)
T ss_pred HHHCCCCceeeEcccc
Confidence 43 4677766655443
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.49 E-value=4e-13 Score=108.90 Aligned_cols=118 Identities=21% Similarity=0.316 Sum_probs=85.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.++++|||+|||+|.+++.+++.|+. |+++|+++ +++.|++|+..++. ...+.+..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----------~~~~~~~~----------- 175 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----------ELNVYLPQ----------- 175 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEcc-----------
Confidence 46789999999999999999988886 99999955 99999999988753 11222211
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecC
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 185 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 185 (199)
.+.+||+|+++-. ...+..++..+.++|+|||.++++...... .+.+.+.+. .+|++.....
T Consensus 176 ~~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 176 GDLKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred CCCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 0127999998732 234677889999999999999998765433 244555553 4688765443
No 53
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.49 E-value=3.6e-13 Score=107.03 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=85.0
Q ss_pred CcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++|||||||+|..+..++.. +.+|+++|++. +++.+++++...+. ..++++...|+.... ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence 47999999999999888876 36799999955 99999998876653 346788887775331 13
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
+.||+|++..++++..+...+++.+.++|+|||.+++....
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 58999999999999889999999999999999999988753
No 54
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=7.1e-13 Score=109.38 Aligned_cols=104 Identities=15% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.+|||+|||+|.+++.+++. +.+|+++|+++ +++.|++|+..++. ..++++...|+... . .
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~--~ 186 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L--P 186 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--C
Confidence 468999999999999999976 46899999955 99999999988863 24688888887432 1 2
Q ss_pred CCCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 120 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.+.||+|++++|+.... .+..++..+.++|+|||.+++....
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 35799999998864321 2366788888999999998887654
No 55
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=3.5e-13 Score=109.03 Aligned_cols=105 Identities=16% Similarity=0.251 Sum_probs=83.0
Q ss_pred CCCcEEEeCCCcChHHHHHHh----hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+.+|||||||+|..+..+++ .+.+|+++|+++ |++.|++++..++. ..++++...|+....
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA-- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhCC--
Confidence 568999999999999888876 257899999954 99999999877642 236788877764321
Q ss_pred cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.+.+|+|+++.++++.. ....+++.+.+.|+|||.+++++...
T Consensus 123 ---~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 123 ---IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred ---CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 24699999988776643 45789999999999999999998654
No 56
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.47 E-value=1.2e-12 Score=112.07 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=87.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|.+++.+++. +++|+++|+++ +++.|++|+..++. ++++.+.|+..... .
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-------------rV~fi~gDl~e~~l--~ 315 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-------------RVEFAHGSWFDTDM--P 315 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------cEEEEEcchhcccc--c
Confidence 4568999999999999998864 56799999955 99999999987742 67888888854321 1
Q ss_pred cCCCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065 119 VAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 173 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~ 173 (199)
..++||+|++|+|+.... .+..+++.+.++|+|+|.+++.......+....++..
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 235799999999864321 2457778888899999998876655444333333333
Q ss_pred HHhCCeE
Q 029065 174 WKSNFNV 180 (199)
Q Consensus 174 ~~~~~~v 180 (199)
.+|..
T Consensus 396 --~Gf~~ 400 (423)
T PRK14966 396 --NGFSG 400 (423)
T ss_pred --CCCcE
Confidence 35644
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=105.70 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||||||+|..+..++.. +.+|+++|+++ +++.++++. .++.+...|.....
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d~~~~~---- 89 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------------PDCQFVEADIASWQ---- 89 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECchhccC----
Confidence 5689999999999999999876 56799999955 998887753 13455555554221
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
..++||+|+++.++++..+...+++.+.+.|+|||.+++..+
T Consensus 90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 245899999999999988999999999999999999988754
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.45 E-value=2.3e-12 Score=103.87 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=87.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+|||+|||+|..++.++.. +.+|+++|++ .+++.++.++..++. .++++...|+... .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~----~ 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------------DNVTFLQSDWFEP----L 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhcc----C
Confidence 3568999999999999999976 4579999995 499999999887753 3678888777542 1
Q ss_pred cCCCccEEEEeccccCCcC--------------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHH
Q 029065 119 VAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ 172 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~--------------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~ 172 (199)
..++||+|++++++..... +..+++.+.++|+|||.+++............+++
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~ 230 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE 230 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence 2468999999988754221 24678889999999999988765433332333333
Q ss_pred HHHhCCeE
Q 029065 173 MWKSNFNV 180 (199)
Q Consensus 173 ~~~~~~~v 180 (199)
. .+|+.
T Consensus 231 ~--~gf~~ 236 (251)
T TIGR03534 231 A--AGFAD 236 (251)
T ss_pred h--CCCCc
Confidence 2 45643
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.45 E-value=1.1e-12 Score=104.96 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
..++++|||||||+|..+..+++.+++|+++|.++ +++.+++++...+. .+++...++.... ..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~--~~ 110 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELA--AE 110 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhh--hh
Confidence 34678999999999999999999899999999954 88899888766532 4566665554322 11
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
..+.||+|+++.++.+..+...+++.+.++|+|+|.++++...+
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 24689999999999998899999999999999999999987643
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.45 E-value=2.4e-12 Score=92.48 Aligned_cols=101 Identities=25% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|..+..+++. +.+|+++|+++ +++.+++++..++. .++++...|.... ...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~ 84 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LED 84 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Chh
Confidence 4679999999999999999976 35799999955 99999999877652 3566666554321 112
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..+.||+|++.... .....+++.+.+.|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 23589999986532 456799999999999999988764
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.44 E-value=1.2e-12 Score=102.95 Aligned_cols=125 Identities=16% Similarity=0.004 Sum_probs=88.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee-CCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~ 117 (199)
.+.+|||+|||+|..+..++.. +.+|+++|+++ +++.+++++..++ ..++++...|+ ..... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~------------~~~v~~~~~d~~~~l~~-~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG------------LTNLRLLCGDAVEVLLD-M 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC------------CCCEEEEecCHHHHHHH-H
Confidence 4679999999999999998876 35699999955 9999999987765 34688888777 32211 1
Q ss_pred ccCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEE
Q 029065 118 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 181 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~ 181 (199)
...+.||+|+++.+..+.. ....+++.+.++|+|||.++++...... ...+++.+. .++.++
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGY--AEYMLEVLSAEGGFLV 177 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHhCccccc
Confidence 2356899999874332111 2578999999999999999998754322 334444443 455554
No 62
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.44 E-value=9.6e-13 Score=105.85 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhh----CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+.+|||+|||+|..+..+++. +++|+++|++ ++++.|++++...+. ..++++...|+....
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence 5679999999999999888864 5679999995 599999998765431 236788887775432
Q ss_pred cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 117 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
.+.+|+|+++.++++.. ....+++.+.+.|+|||.++++++.+.
T Consensus 120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 24689999988876643 568899999999999999999987653
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.44 E-value=2.4e-12 Score=102.02 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=95.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCC---CCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||.|..++++|.+|.+|+++|+++ +++.+... ++.....-+. .-.....+++.+.|+.+...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-- 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA-- 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence 567999999999999999999999999999965 88865332 1111000000 00012467888888765431
Q ss_pred ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEE-EEEEEec-----Chh--H-HHHHHHHHHhCCeEEEecCC
Q 029065 118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTI-LLGYEIR-----STS--V-HEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i-~i~~~~~-----~~~--~-~~~~~~~~~~~~~v~~~~~~ 186 (199)
...+.||.|+-..++.+ .+....+++.+.++|+|||.+ +++.... .+. . ...+.+.+...|+++.+...
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~ 188 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR 188 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence 11357999998877665 445677999999999999974 4433221 111 1 33455555567899888887
Q ss_pred CcCccc
Q 029065 187 KESTMW 192 (199)
Q Consensus 187 ~~~~~~ 192 (199)
..+++.
T Consensus 189 ~~~~~~ 194 (213)
T TIGR03840 189 DVLEDN 194 (213)
T ss_pred cccccC
Confidence 777443
No 64
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.44 E-value=4.5e-13 Score=103.39 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=77.0
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
.++||+|||.|.++..||.++.+++++|+++ +++.|++.+.. .+++++.+.++... .+.++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence 4799999999999999999988899999955 99999988653 23788888887543 24679
Q ss_pred ccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 123 FDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 123 fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
||+|+.++++|+.. ++..++..+...|+|||.++++...
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999999999865 4667889999999999999998753
No 65
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=1.8e-12 Score=107.04 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=83.3
Q ss_pred CcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+|||+|||+|.+++.++... .+|+++|++. +++.|++|+..++. ..++++...|+.... ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~ 180 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG 180 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence 689999999999999999864 5799999954 99999999988763 235888888885421 12
Q ss_pred CCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 121 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
.+||+|++++|+.... .+..++....++|+|||.+++........
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~ 250 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQK 250 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 3799999998764321 35678888889999999988877654443
No 66
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=4.8e-12 Score=96.75 Aligned_cols=79 Identities=34% Similarity=0.483 Sum_probs=68.6
Q ss_pred CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
....++|++|+|+|||||.+++.++.+|++ |+++|+ +++++.+++|+... ...+++...|..+.
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~- 105 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------------LGDVEFVVADVSDF- 105 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------------CCceEEEEcchhhc-
Confidence 567789999999999999999999999986 999999 66999999999874 45789988888644
Q ss_pred cccccCCCccEEEEeccccC
Q 029065 115 HIKAVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~ 134 (199)
.++||.++.|+|+-.
T Consensus 106 -----~~~~dtvimNPPFG~ 120 (198)
T COG2263 106 -----RGKFDTVIMNPPFGS 120 (198)
T ss_pred -----CCccceEEECCCCcc
Confidence 578999999999854
No 67
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3.9e-14 Score=105.34 Aligned_cols=150 Identities=26% Similarity=0.308 Sum_probs=107.8
Q ss_pred ceeeccccccccCccCCCCCCCCcEEEeCCC-cChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCC
Q 029065 22 QLQFSQEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGS 97 (199)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~VLdlGcG-~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~ 97 (199)
.++.+......+..-+|..+.|++|||||.| +|+.|+.+|... ..|..+|.++ .+++.+...-.|..
T Consensus 9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--------- 79 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--------- 79 (201)
T ss_pred EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc---------
Confidence 3344444444445557888899999999999 599999998763 3499999865 88888877666532
Q ss_pred CCCCcE-EEEEeeeCCC-ccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH
Q 029065 98 DLLGSI-QAVELDWGNE-DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK 175 (199)
Q Consensus 98 ~~~~~i-~~~~~d~~~~-~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~ 175 (199)
+.+ ++..+.|..- ...+.....||+|+++|++|..+...+++++++++|+|.|..++..|.|.. ..+.|++...
T Consensus 80 ---s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-sL~kF~de~~ 155 (201)
T KOG3201|consen 80 ---SSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-SLQKFLDEVG 155 (201)
T ss_pred ---cccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc-hHHHHHHHHH
Confidence 122 2223333211 112222458999999999999999999999999999999998887776655 4788888875
Q ss_pred -hCCeEEEec
Q 029065 176 -SNFNVKLVP 184 (199)
Q Consensus 176 -~~~~v~~~~ 184 (199)
.+|.|....
T Consensus 156 ~~gf~v~l~e 165 (201)
T KOG3201|consen 156 TVGFTVCLEE 165 (201)
T ss_pred hceeEEEecc
Confidence 478886544
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=1.7e-12 Score=101.76 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.++.+|||+|||+|.+++.++..+ ++|+++|.+ ++++.+++|++.++. .++++.+.|+.... ..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~ 117 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQ 117 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hh
Confidence 467899999999999999755444 569999994 599999999988863 36788887775321 11
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHh--cCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~--l~~~g~i~i~~~~~ 162 (199)
...+||+|++++| |.......+++.+... ++|++.+|+.....
T Consensus 118 ~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 118 PGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred cCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 2346999999988 5667778888888775 78999999987654
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.42 E-value=1e-11 Score=97.29 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=79.2
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..++.+|||+|||+|.+++.+++. +.+|+++|.+ ++++.+++|+..++. ..++.+...|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~-- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI-- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh--
Confidence 346789999999999999999864 3579999994 599999999987753 24677776665432
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.....+.||+|++.. ....+..+++.+.+.|+|||.+++..
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 122236899999853 34567889999999999999987643
No 70
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=2.7e-12 Score=107.00 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=80.8
Q ss_pred CcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+|||+|||+|.+++.++.. +.+|+++|++. +++.|++|+..++. ..++++.+.|+... . ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~ 199 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG 199 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence 68999999999999999976 45799999955 99999999988763 23688888887432 1 23
Q ss_pred CCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 121 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
++||+|++++|+.... .+..+++.+.++|+|||.+++....
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 5799999998764311 2357788889999999999886554
No 71
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.41 E-value=5.5e-13 Score=109.51 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+|++||++.|-||..|+.++..||. |+.+|.+. +++++++|+..|+.. ..++++...|+........
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHh
Confidence 36899999999999999999999985 99999966 999999999999853 3578888877653221111
Q ss_pred cCCCccEEEEeccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEEecCCCcCcc
Q 029065 119 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAKESTM 191 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 191 (199)
..++||+||+.+|-|... ++.+++..+.++|+|||.++++.....-. .+.|.+.+.+ .-+++.+..-..|++
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~~~a~~~~~~~~~~~p~d 270 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVAEAAREVEFIERLGQPPD 270 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHHHHHHHCEEEEEEE----
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHHHhCccceEeeeeccccc
Confidence 246899999998887633 57788889999999999988777654332 2234443321 224444455556666
Q ss_pred cCC
Q 029065 192 WGN 194 (199)
Q Consensus 192 ~~~ 194 (199)
|.+
T Consensus 271 f~~ 273 (286)
T PF10672_consen 271 FPD 273 (286)
T ss_dssp ---
T ss_pred ccc
Confidence 644
No 72
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.41 E-value=2.9e-12 Score=107.79 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=80.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+|||||||+|..++.+++. +.+|+++|.++ +++.++++...+ ++++...|..+. ..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~l---p~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAEDL---PF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHhC---CC
Confidence 4579999999999998888764 45799999954 999988875422 456666665432 23
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..+.||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3568999999999988888999999999999999998887543
No 73
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=4.2e-12 Score=112.39 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|.+++.++.. +++|+++|+++ +++.|++|+..++. ..++++...|+... .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~----~ 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFEN----I 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhh----C
Confidence 3468999999999999988864 56899999955 99999999987753 24678888777432 1
Q ss_pred cCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 119 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
..++||+|++++|+.... .+..+++.+.++|+|||.+++........
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~ 275 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEE 275 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHH
Confidence 235799999998875421 24556778888999999998876544443
No 74
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=3.2e-12 Score=101.49 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=86.9
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
...+.+|||+|||+|..+..++..+++|+++|.+. +++.+++++..++. .++.+...++..... .
T Consensus 43 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~ 108 (224)
T TIGR01983 43 PLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--K 108 (224)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--C
Confidence 34688999999999999999998888999999954 98999988876542 145666655543211 1
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
..++||+|+++.++++..+...+++.+.++|+++|.++++...+
T Consensus 109 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 109 GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 13689999999999999999999999999999999998876543
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=5.6e-13 Score=93.19 Aligned_cols=92 Identities=24% Similarity=0.293 Sum_probs=71.2
Q ss_pred EEEeCCCcChHHHHHHhhC-----CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 46 VIELGAGCGVAGFGMALLG-----CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 46 VLdlGcG~G~~sl~la~~g-----~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
|||+|||+|.....++... .+++++|+++ +++.++++....+. ++++.+.|+.+. ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~l---~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARDL---PFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTCH---HHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhHC---ccc
Confidence 7999999999999999774 6799999955 99999988766532 678888887543 345
Q ss_pred CCCccEEEEecc-ccC--CcChHHHHHHHHHhcCCCc
Q 029065 120 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT 153 (199)
Q Consensus 120 ~~~fD~Ii~~~~-~~~--~~~~~~~l~~l~~~l~~~g 153 (199)
.++||+|+++.. +.+ ......+++.+.++|+|||
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 679999999644 544 4568999999999999987
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.40 E-value=6e-12 Score=98.28 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=86.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+|||||||+|..+..++.. ...|+++|++. +++.|++++...+ ..++++.+.|.........
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~------------l~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG------------LKNLHVLCGDANELLDKFF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC------------CCCEEEEccCHHHHHHhhC
Confidence 3568999999999999999977 44699999954 9999999887765 3478888888753321112
Q ss_pred cCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh
Q 029065 119 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 176 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~ 176 (199)
..+.+|.|+++-+--+.. ....+++.+.++|+|||.+++....... .+.+++.+..
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~--~~~~~~~~~~ 147 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL--FEDMLKVLSE 147 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH--HHHHHHHHHh
Confidence 245899999874432211 1267999999999999999988755422 3344455443
No 77
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.40 E-value=5.2e-12 Score=100.78 Aligned_cols=106 Identities=16% Similarity=0.143 Sum_probs=85.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..++..+ .+|+++|+++ +++.+++++..++. ..++.+...|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP--- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence 56899999999999999998776 6799999954 99999988765432 235777777775432
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
...+.||+|+++..+.+..+...+++.+.++|+|||.+++....
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 23468999999988888889999999999999999998887653
No 78
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.40 E-value=4.6e-12 Score=103.71 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=78.0
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHH--HHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
..++|++|||||||.|..+..++..|++ |+|+|.+. .+-+. .+.+..+ ...+....+.++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------------~~~~~~lplgvE--- 175 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------------DPPVFELPLGVE--- 175 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------------CccEEEcCcchh---
Confidence 3679999999999999999999999997 99999743 32222 1222111 112222222332
Q ss_pred cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.++. .+.||+|++-+++||..++-..+..++..|++||.+++....
T Consensus 176 ~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 176 DLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred hccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 2233 578999999999999999999999999999999998877643
No 79
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=1e-11 Score=101.60 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=80.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|.+++.++... .+|+++|+++ +++.+++|+.... ..++.+...|+....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~------------~~~i~~~~~d~~~~~---- 171 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL------------GARVEFLQGDWFEPL---- 171 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC------------CCcEEEEEccccCcC----
Confidence 56799999999999999999875 6799999955 9999999987221 346888888874321
Q ss_pred cCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
..++||+|++++++.... .+..++..+.++|+|||.+++.....
T Consensus 172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD 241 (275)
T ss_pred CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence 146899999998864321 13567788889999999998865443
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.38 E-value=4.6e-12 Score=100.95 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=81.2
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.++++|||+|||+|..+..++..+. +|+++|++. +++.++.... .++.+...|.....
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~--- 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLP--- 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCC---
Confidence 4467999999999999999998764 489999955 7777766532 14566666665332
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
...+.||+|+++.++++..++..++..+.++|+|||.++++...
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 23568999999999999989999999999999999999988654
No 81
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=3.9e-12 Score=109.01 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=78.9
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
-++.+|||||||+|.+++.+++. |++|+++|+++ +++.+++++... .+++...|+...
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------------~v~~~~~D~~~l----- 225 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------------PVEIRLQDYRDL----- 225 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------------eEEEEECchhhc-----
Confidence 35789999999999999999875 78999999955 999998876321 356666565321
Q ss_pred cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.++||.|++..++.+. ..+..+++.+.++|+|||.+++...
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4689999999988875 4568999999999999999988653
No 82
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=5.3e-12 Score=97.63 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=89.5
Q ss_pred cEEEeCCCcChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEE-EEEeeeCCCccccccCC
Q 029065 45 RVIELGAGCGVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~ 121 (199)
.|||+|||||..--+.- +.+.+|+++|.++ |-+.+...+..+. ..++. ++..+-++..++ .++
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------------~~~~~~fvva~ge~l~~l--~d~ 144 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------------PLQVERFVVADGENLPQL--ADG 144 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------------CcceEEEEeechhcCccc--ccC
Confidence 78999999998766665 4688999999966 9899988887763 22443 666666554433 478
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-hHHHHHHH
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQ 172 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-~~~~~~~~ 172 (199)
++|.|++.=+++...++.+.++.+.++|+|||++++....+.. .++..+++
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence 9999999999999999999999999999999999999887654 33444433
No 83
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=1e-11 Score=98.80 Aligned_cols=104 Identities=20% Similarity=0.148 Sum_probs=82.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++.+|||+|||+|..+..++... ++|+++|.++ +++.++++.... ..++.+...|.....
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~-- 82 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP-- 82 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC--
Confidence 356899999999999999888753 5799999954 888888773222 235777776664332
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...+.||+|++..++.+..++..+++.+.++|+|||.+++..+
T Consensus 83 -~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 -FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 2356899999999999989999999999999999999988764
No 84
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=1.3e-11 Score=98.04 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=92.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCC---CCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||.|..++++|..|.+|+++|+++ +++.+.. .+++....... .-....+|++.+.|+.....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~-- 111 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA-- 111 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc--
Confidence 467999999999999999999999999999965 8887632 22211000000 00113467777777754421
Q ss_pred ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEE-ec-----Chh---HHHHHHHHHHhCCeEEEecCC
Q 029065 118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE-IR-----STS---VHEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~-~~-----~~~---~~~~~~~~~~~~~~v~~~~~~ 186 (199)
...+.||.|+-..++.+ .+....++..+.++|+|||.+++... .. .+. ..+.+.+.+...|+++.+...
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~ 191 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ 191 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence 12357999998877665 45678999999999999996444222 11 111 133444445545888877765
Q ss_pred CcCc
Q 029065 187 KEST 190 (199)
Q Consensus 187 ~~~~ 190 (199)
....
T Consensus 192 ~~~~ 195 (218)
T PRK13255 192 DVLE 195 (218)
T ss_pred cccc
Confidence 5443
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.36 E-value=7.6e-12 Score=97.39 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=78.4
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.+++++|||++||+|.+++.++.+|+ .|+++|.+ .+++.+++|++.++. ..++++...|........
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence 46789999999999999999999998 49999995 599999999998863 235677777764321111
Q ss_pred ccCCC-ccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEe
Q 029065 118 AVAPP-FDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~ 161 (199)
..... ||+|+. ||.|.......++..+.. +++++|.+++....
T Consensus 116 ~~~~~~~dvv~~-DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 116 AKKPTFDNVIYL-DPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred hccCCCceEEEE-CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 11223 566555 555666777788877755 57788876665443
No 86
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.36 E-value=6.4e-12 Score=99.73 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=79.2
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
..++.+|||+|||+|..+..++..+.+|+++|+++ +++.|++++..++. ..++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~----- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL----- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence 45678999999999999999999888999999954 99999998866542 23677877776533
Q ss_pred cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065 119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i 157 (199)
.+.||+|++..++++. .....++..+.+++++++.+.+
T Consensus 117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2689999999888663 3577888888888886655444
No 87
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=1.5e-11 Score=98.33 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
+.+|||||||||..+..++.. +.+|+++|+++ |++.++.+. ...+.|.. ..+..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~d~~---~lp~~d 108 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVGSFE---ALPFRD 108 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEechh---hCCCCC
Confidence 679999999999999999987 67899999955 999887531 12233433 234456
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK 152 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~ 152 (199)
++||+|+++..+++..+++.+++.+.++|+|.
T Consensus 109 ~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 109 KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 89999999999999999999999999999994
No 88
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=1.4e-11 Score=116.01 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=98.3
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhcccc----CCCCCCCCCcEEEEEeeeCCC
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQ----MNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+++++|||||||+|.+++.++... ++|+++|++. +++.|++|+..|+..-.. ........+++++.+.||.+.
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 456799999999999999999764 5799999955 999999999987531000 000001234789999998643
Q ss_pred ccccccCCCccEEEEeccccCCc--------------------------------------ChHHHHHHHHHhcCCCcEE
Q 029065 114 DHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLLQTIFALSGPKTTI 155 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~~~~~--------------------------------------~~~~~l~~l~~~l~~~g~i 155 (199)
. .....+||+||+|+|+-... .+..++....++|+|||.+
T Consensus 197 ~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 197 C--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred c--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 2 11123699999999873211 1356777888899999999
Q ss_pred EEEEEecChhHHH-HHHHHHHhCCeEEEecCCC
Q 029065 156 LLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK 187 (199)
Q Consensus 156 ~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~ 187 (199)
++....+..+... .+++. .+|....+...+
T Consensus 275 ~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 275 IFNMGGRPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred EEEECccHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 9988877665443 34443 567776655554
No 89
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.34 E-value=1.3e-11 Score=107.78 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~ 119 (199)
++.+|||+|||+|.+++.++..+.+|+++|+++ +++.|++|+..++. .++++...|+.+... ....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL------------DNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEeChHHhhhhhhhh
Confidence 467999999999999999999988999999955 99999999988863 368888888854321 1122
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (199)
...||+|+++++.-. ...++..+.+ +++++.+|++-..... -.++......+|+++.+..-
T Consensus 365 ~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~gY~l~~i~~~ 425 (443)
T PRK13168 365 LGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAGYRLKRAGML 425 (443)
T ss_pred cCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCCcEEEEEEEe
Confidence 357999999877533 3466676666 5889999998754321 12222222567888877543
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.34 E-value=1.1e-11 Score=98.33 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=75.3
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCC---eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~---~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++.+|||||||+|..+..+++... +|+++|+ +++++.|++++..++ ..++++...|.....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g------------~~~v~~~~~d~~~~~-- 141 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG------------LDNVIVIVGDGTQGW-- 141 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC------------CCCeEEEECCcccCC--
Confidence 3678999999999999999998744 4999998 559999999998876 346788877764321
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....+||+|++.... ..+...+.+.|+|||.+++...
T Consensus 142 -~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 142 -EPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred -cccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence 123589999987543 2344567888999999887643
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.32 E-value=2.3e-11 Score=101.33 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++.+|||||||+|..++.+++.. .+++++|.+++++.+++++...+. .+++++...|.....
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~----- 212 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES----- 212 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----
Confidence 45799999999999999999874 569999998899999999887754 347888888775321
Q ss_pred CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.+.+|+|+.+.++++.. ....+++.+.+.|+|||.+++.+..
T Consensus 213 ~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 213 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 13479999888887643 3568999999999999999998764
No 92
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.31 E-value=3e-11 Score=101.09 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=88.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|.+++.++..+.+|+++|.+ ++++.|++|+..++. .++++...|..... ....
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~--~~~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFA--TAQG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHH--HhcC
Confidence 46899999999999999999999899999995 499999999988863 46888887775332 1123
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 185 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (199)
+.||+|+++++- ......+++.+.+ +.|+.++|++-...... ..+ +.+ .+|+++.+..
T Consensus 239 ~~~D~Vv~dPPr--~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~ 296 (315)
T PRK03522 239 EVPDLVLVNPPR--RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQL 296 (315)
T ss_pred CCCeEEEECCCC--CCccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEE
Confidence 479999999873 2334556666555 57888888877654321 222 233 5788876654
No 93
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=3.1e-11 Score=95.04 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=74.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..+++. +.+|+++|++ ++++.+++|+..++. ..++++...|.....
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~--- 137 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL--- 137 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC---
Confidence 5679999999999999888865 3589999995 599999999887753 235777777764321
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....+||+|++...+.+ +.+.+.+.|+|||.+++...
T Consensus 138 ~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 138 EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence 12468999999866532 33567788999999887653
No 94
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.31 E-value=1e-10 Score=91.38 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=88.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|..++.+++. +.+|+++|.+ ++++.+++|+..++. .++++...|.... ...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~ 105 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ 105 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence 5679999999999999999865 4679999994 599999999987752 3577777665321 111
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh-HHHHHHHHH-HhCCeEEEecCCCc
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMW-KSNFNVKLVPKAKE 188 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~ 188 (199)
....+|.++... ...+..+++.+.++|+|||.+++.......- .....++.. ..++++..+...+.
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRL 173 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhc
Confidence 123467665532 3467899999999999999988887643221 122333333 24677776655443
No 95
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.31 E-value=4.6e-11 Score=99.76 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=73.8
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||+|||+|.+++.+++.|.+|+++|+++ |++.+++++...... +.....+++...|+.. .
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-------~~~~~~~~f~~~Dl~~------l 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAA-------LPPEVLPKFEANDLES------L 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccc-------cccccceEEEEcchhh------c
Confidence 4678999999999999999999999999999965 999999987654210 0001245666666532 1
Q ss_pred CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.+.||+|++.++++|... ...+++.+.++ .++ .++|+.
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g-~liIs~ 249 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEK-RLIISF 249 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCC-EEEEEe
Confidence 468999999999876433 44567777654 444 445554
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.31 E-value=1.6e-11 Score=108.12 Aligned_cols=103 Identities=23% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++++|||||||+|..+..++..+.+|+++|++. +++.++. .++. ..++.+...|..... .+...
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~~-~~~~~ 101 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSPD-LNISD 101 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEecccccc-cCCCC
Confidence 567999999999999999999888999999954 8776543 2211 246788887775322 22335
Q ss_pred CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065 121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
++||+|+++.++++..+ ...+++.+.++|+|||.+++.+
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 78999999999888554 6899999999999999998865
No 97
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=5.4e-11 Score=94.00 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=81.3
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 116 (199)
.++.+|||||||+|..+..++... .+|+++|++++ +. ...+.+.+.|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence 357799999999999999888763 46999998662 11 12478888888764311
Q ss_pred ----cccCCCccEEEEeccccCCcC-----------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065 117 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 180 (199)
Q Consensus 117 ----~~~~~~fD~Ii~~~~~~~~~~-----------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v 180 (199)
....+.||+|+++...+.... ...+++.+.++|+|||.+++..... +.+..++..+...|.-
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceE
Confidence 122568999999764444221 2568899999999999998865433 2245677777777654
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.30 E-value=3.2e-11 Score=101.50 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=83.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|.+.+.++..|++|+++|++. +++.++.|+...+. ..+++...|..+. +...
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~l---~~~~ 246 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATKL---PLSS 246 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhcC---Cccc
Confidence 467999999999999999999999999999954 99999999987763 2366667666543 2235
Q ss_pred CCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 121 PPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+.||+|++++|+... .....+++.+.+.|+|||.+++..+..
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 689999999876331 125789999999999999988887754
No 99
>PRK04266 fibrillarin; Provisional
Probab=99.29 E-value=9.7e-11 Score=93.57 Aligned_cols=128 Identities=17% Similarity=0.144 Sum_probs=81.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|..++.++... .+|+++|+++ +++.+.+++... .++.+...|.........
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~~~ 137 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERYAH 137 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchhhh
Confidence 57799999999999999999863 4799999954 888777665432 245666666543211111
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC------h-hHHHHHHHHH-HhCCeEEEecC
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS------T-SVHEQMLQMW-KSNFNVKLVPK 185 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~------~-~~~~~~~~~~-~~~~~v~~~~~ 185 (199)
....||+|++.-. .+.....+++.+.++|+|||.++|+.+.+. + ...+...+.+ ..+|++.+...
T Consensus 138 l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 138 VVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred ccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 2356999986421 111224568999999999999999533221 1 1122233444 34788765443
No 100
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.29 E-value=2.7e-11 Score=95.36 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++.+|||+|||+|..+..++.. +.+|+++|+++ +++.|+++.. .+.+...|..+ +.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~ 101 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF 101 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence 5678999999999999988876 57899999955 9999987531 23455555543 23
Q ss_pred cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..+.||+|+++.+++|. .....+++.+.+.++ +.++++.
T Consensus 102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i~e 142 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYILIAE 142 (204)
T ss_pred CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEEEEE
Confidence 36789999999999875 346677777777763 4555554
No 101
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.29 E-value=5.3e-12 Score=97.74 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=78.3
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 117 (199)
++|++||||.||+|.+|+.+..+||+ |+++|.+ .++..+++|++..+. ..++.+...|..... ...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence 78999999999999999999999986 9999995 499999999987754 224677666643221 111
Q ss_pred ccCCCccEEEEeccccCCcC-hHHHHHHHH--HhcCCCcEEEEEEEec
Q 029065 118 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR 162 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~-~~~~l~~l~--~~l~~~g~i~i~~~~~ 162 (199)
....+||+|++.|| |.... +..++..+. .+|+++|.+++....+
T Consensus 110 ~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 110 KKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 13578999999766 55444 588898887 6789999888877655
No 102
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.29 E-value=5.1e-11 Score=94.04 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCC---eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~---~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..+++.+. +++++|++ .+++.++++.. . ..++.+...|..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------------~~~i~~~~~d~~~~~--- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------------PLNIEFIQADAEALP--- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------------CCCceEEecchhcCC---
Confidence 678999999999999998887654 79999995 48888887764 1 235677776665432
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
...+.||+|+++..+.+..+...+++.+.++|+|||.+++....
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 23468999999988888889999999999999999999887654
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.28 E-value=4.9e-11 Score=81.49 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=78.3
Q ss_pred cEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+|+|+|||+|..+..++. .+.+++++|.+. +++.+++...... ...+++...|+.+... ...+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence 589999999999888887 456799999954 7777775332222 3467777777764432 13568
Q ss_pred ccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEE
Q 029065 123 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 123 fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
||+|+++.++++ ......+++.+.+.++++|.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999888 889999999999999999998876
No 104
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=5.4e-11 Score=94.22 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=73.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
-++.+|||+|||+|..+..+++. + .+|+++|++ ++++.+++++...+ ..++++...|....
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g------------~~~v~~~~gd~~~~--- 139 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG------------YDNVEVIVGDGTLG--- 139 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC------------CCCeEEEECCcccC---
Confidence 35789999999999999888876 3 579999995 59999999988765 34678888775422
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.....+||+|++.... ..+...+.+.|+|||.+++..
T Consensus 140 ~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 1234689999986532 233456777899999987754
No 105
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.28 E-value=4e-11 Score=95.47 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=73.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||+|||+|..+..++..+.+|+++|+++ +++.|+++....+. ..++.+...|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence 4578999999999999999999899999999955 99999988766542 2367777766431 2
Q ss_pred CCCccEEEEeccccC--CcChHHHHHHHHHhcCCCc
Q 029065 120 APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKT 153 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g 153 (199)
.+.||+|++..++++ ......+++.+.+++++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 468999999998865 3456677788777665443
No 106
>PRK06922 hypothetical protein; Provisional
Probab=99.27 E-value=3.1e-11 Score=108.09 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=79.8
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.++.+|||+|||+|..+..++.. +.+|+++|++. |++.|+.+....+ .++.+...|..+... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence 35789999999999988888764 56899999965 9999988765442 245666656543211 1
Q ss_pred ccCCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...++||+|+++.++++ ......+++.+.++|+|||.+++.+.
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 23568999999877653 23568899999999999999999875
No 107
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.26 E-value=1.1e-10 Score=99.83 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=90.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+.+|||+|||+|.+++.++..+.+|+++|++ .+++.|++|+..++. +++++...|...... ...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~ 298 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM 298 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence 46799999999999999999988889999995 599999999988863 368888877753321 112
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (199)
.+||+|++++|. ......+++.+.. ++|++.+|++-... .+.+=+..+ .+|+++.+..-
T Consensus 299 ~~~D~vi~DPPr--~G~~~~~l~~l~~-~~p~~ivyvsc~p~---TlaRDl~~L-~gy~l~~~~~~ 357 (374)
T TIGR02085 299 SAPELVLVNPPR--RGIGKELCDYLSQ-MAPKFILYSSCNAQ---TMAKDIAEL-SGYQIERVQLF 357 (374)
T ss_pred CCCCEEEECCCC--CCCcHHHHHHHHh-cCCCeEEEEEeCHH---HHHHHHHHh-cCceEEEEEEe
Confidence 469999998884 2455677777764 68999999986532 222212233 67888776543
No 108
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=1.1e-10 Score=92.32 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||+|||+|..+..+++.+.+|+++|++ ++++.+++++...+ ..++++...|..... ..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~---~~ 141 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG------------LHNVSVRHGDGWKGW---PA 141 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC------------CCceEEEECCcccCC---Cc
Confidence 356899999999999999888887789999994 59999999988765 235777776653221 12
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.++||+|++...+ ..+...+.+.|+|||.+++...
T Consensus 142 ~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 3689999987643 2345667889999999888765
No 109
>PRK06202 hypothetical protein; Provisional
Probab=99.24 E-value=1.2e-10 Score=93.23 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=73.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh----C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~----g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
++.+|||||||+|.++..++.. | .+|+++|++ ++++.|+++...+ ++.+...+....
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~l- 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------------GVTFRQAVSDEL- 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------------CCeEEEEecccc-
Confidence 4579999999999988888752 3 479999995 4999998875433 233333333222
Q ss_pred cccccCCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 115 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
...+++||+|+++.+++|..+ ...+++.+.++++ |.+++.+..+.
T Consensus 124 --~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 124 --VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred --cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 123568999999999988665 4678999999987 56666665554
No 110
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=2.6e-10 Score=91.72 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCCCCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 37 CPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+...+++..+||+|||+|.+++.++.. -++|+++|.++ ++..|.+|++++.+ ...+.+.+.+.+..
T Consensus 143 ~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----------~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 143 NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----------SGRIEVIHNIMESD 211 (328)
T ss_pred hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----------cCceEEEecccccc
Confidence 334556778999999999999999864 34599999966 99999999999876 34666664433222
Q ss_pred --ccccccCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 114 --DHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 114 --~~~~~~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+......+++|++++|+++-... .+..++.-..++|+|||.+.+....+
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 11223358999999999984422 24556666778899999999988844
No 111
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.22 E-value=4.2e-11 Score=98.82 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=87.8
Q ss_pred cCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 36 FCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
-|..+|+++.|||+|||+|.++.++|..|++ |.+++-++|.+.|+.-++.|.+ .++|.+..+.+++.+
T Consensus 171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie 239 (517)
T KOG1500|consen 171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE 239 (517)
T ss_pred hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc
Confidence 4889999999999999999999999999997 9999999999999998888854 568888887766543
Q ss_pred cccccCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEEE
Q 029065 115 HIKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~i 157 (199)
..++.|+||+-++-| +..+++..+... +.|+|.|.++=
T Consensus 240 ----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfP 280 (517)
T KOG1500|consen 240 ----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFP 280 (517)
T ss_pred ----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccC
Confidence 246899999876654 466777777666 89999987653
No 112
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.3e-10 Score=86.92 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=96.7
Q ss_pred CCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+-|||||||+|..+-++++. + +.+.++|+ +.+++..++.+..|+. .++.+..|+...-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------------~~~~V~tdl~~~l---- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------------HIDVVRTDLLSGL---- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------------ccceeehhHHhhh----
Confidence 468999999999999999975 3 34899999 5599999999888864 4566666654332
Q ss_pred cCCCccEEEEeccccCCc---------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-Hh
Q 029065 119 VAPPFDYIIGTDVVYAEH---------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KS 176 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~---------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~ 176 (199)
.+++.|+++.++++-..+ ..+.++..+.++|+|.|.+|+....++.. ++.++.+ ..
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~ 184 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKK 184 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhc
Confidence 237899999998873321 26778888889999999999998877653 4555544 46
Q ss_pred CCeEEEecCCCcCcc
Q 029065 177 NFNVKLVPKAKESTM 191 (199)
Q Consensus 177 ~~~v~~~~~~~~~~~ 191 (199)
+|.+.....++...+
T Consensus 185 g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 185 GYGVRIAMQRKAGGE 199 (209)
T ss_pred ccceeEEEEEecCCc
Confidence 788877766665543
No 113
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.21 E-value=1.4e-10 Score=100.97 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=90.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~ 119 (199)
.+.+|||+|||+|.+++.+++.+.+|+++|++ ++++.|++|+..++ ..++++...|+.... .....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~------------~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG------------IANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC------------CCceEEEeCCHHHHHHHHHhc
Confidence 35799999999999999999988889999995 49999999998886 347888888875321 11112
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 185 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 185 (199)
...||+|+.+++-. .....+++.+.+ ++|++.+|++... ..+.+-++.+ ..+|+++.+..
T Consensus 360 ~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 360 GQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEE
Confidence 35799999987732 335677777665 7888988887542 2233333334 45688876654
No 114
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.21 E-value=2.9e-10 Score=86.45 Aligned_cols=120 Identities=22% Similarity=0.293 Sum_probs=89.0
Q ss_pred cEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 45 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
+|||||||-|.+-..|+..|.+ .+++|+++ +++.|+..++.++. ...|++.++|+..++ ...+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----------~n~I~f~q~DI~~~~---~~~~ 135 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----------SNEIRFQQLDITDPD---FLSG 135 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----------CcceeEEEeeccCCc---cccc
Confidence 9999999999999999988764 99999966 99998888777764 335999999997653 3467
Q ss_pred CccEEEEeccccC--------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEE
Q 029065 122 PFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVK 181 (199)
Q Consensus 122 ~fD~Ii~~~~~~~--------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~ 181 (199)
+||+|+--.++-. ...+.-.+..+.++|+|+|+++|.-.+...+ ++.+.+.. +|++.
T Consensus 136 qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d---ELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 136 QFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD---ELVEEFENFNFEYL 201 (227)
T ss_pred ceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH---HHHHHHhcCCeEEE
Confidence 8888875544311 2223556888899999999999988876654 34444443 46654
No 115
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=1.1e-09 Score=83.87 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=89.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+|.+++|+|||||.+++.++..+ .+|+++|. +++++..++|++..+ .+++++...+-- +.+..
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg------------~~n~~vv~g~Ap--~~L~~ 99 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG------------VDNLEVVEGDAP--EALPD 99 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC------------CCcEEEEeccch--HhhcC
Confidence 57799999999999999999665 46999998 559999999999887 457888775542 22221
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCC-eEEEecC
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLVPK 185 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~ 185 (199)
...||.|+.... ..++.+++++...|+|||.+++..-.- +.....++.+. .++ ++.++.-
T Consensus 100 -~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 100 -LPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQI 161 (187)
T ss_pred -CCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEe
Confidence 237999998765 689999999999999999977654321 22233334443 355 5555443
No 116
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.20 E-value=5.9e-11 Score=96.99 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCCcEEEeCCCcCh----HHHHHHhh-------CCeEEEeechh-HHHHHHHHHHH----hhhcc----ccCCCCC----
Q 029065 42 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQIE-VLPLLKRNVEW----NTSRI----SQMNPGS---- 97 (199)
Q Consensus 42 ~~~~VLdlGcG~G~----~sl~la~~-------g~~v~~~D~~~-~l~~a~~~~~~----~~~~~----~~~~~~~---- 97 (199)
++.+|||+|||+|- +++.++.. +.+|+|+|+++ +++.|++.+-. .+.+. +.+.+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35699999999995 45555543 34699999965 99999875411 11000 0011110
Q ss_pred ---CCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 98 ---DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 98 ---~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....++.+...|..+.. ...++||+|++..++.+. .....+++.+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 11235777777775432 235789999999888664 4567899999999999999998654
No 117
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=4.9e-10 Score=89.25 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=96.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCC--C-CCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMN--P-GSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~--~-~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+||..|||.|...++||..|.+|+|+|+++ +++.+.+. ++...+... . .-.....+++.+.|+.+.....
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH---cCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 467999999999999999999999999999966 88877442 111100000 0 0011346888888886553221
Q ss_pred ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe-c----Chh--H-HHHHHHHHHhCCeEEEecCCC
Q 029065 118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI-R----STS--V-HEQMLQMWKSNFNVKLVPKAK 187 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~-~----~~~--~-~~~~~~~~~~~~~v~~~~~~~ 187 (199)
...++||+|+-...+.. ++...+.++.+.++|+|||.+++..-. . .+. + .+.+...+...|+++.+....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~~ 199 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSKQ 199 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeecc
Confidence 22468999988777755 667899999999999999976544332 1 111 1 344555567778888877643
Q ss_pred c
Q 029065 188 E 188 (199)
Q Consensus 188 ~ 188 (199)
.
T Consensus 200 ~ 200 (226)
T PRK13256 200 R 200 (226)
T ss_pred c
Confidence 3
No 118
>PLN03075 nicotianamine synthase; Provisional
Probab=99.19 E-value=3e-10 Score=93.56 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=81.2
Q ss_pred CCCcEEEeCCCcC-hHHHHHH-hh--CCeEEEeech-hHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGCG-VAGFGMA-LL--GCNVITTDQI-EVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G-~~sl~la-~~--g~~v~~~D~~-~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+++|+|||||.| +.++.++ .. +.+++++|.+ ++++.|++.+.. .++ .+++++...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence 6789999999976 4455555 33 4579999995 599999998854 332 457999988876431
Q ss_pred ccccCCCccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...+.||+|++...+|+ ......+++.+.+.|+|||.+++...
T Consensus 191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 12468999999966666 48999999999999999999988763
No 119
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=90.64 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=81.0
Q ss_pred CcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+|.|||||+|..+..++++ ++.++|+|.+ +|++.|++.. .+.++...|+..- .+.
T Consensus 32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aDl~~w----~p~ 90 (257)
T COG4106 32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEADLRTW----KPE 90 (257)
T ss_pred ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------CCCceecccHhhc----CCC
Confidence 58999999999999999976 6789999985 5998886542 2445555554322 235
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
..+|+|++|.++.+..++..++..+...|.|||.+-+-.+....
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 68999999999999999999999999999999999888876443
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=7.6e-10 Score=96.78 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=80.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..++.++.. ..+|+++|++ .+++.+++|+..++. .++++...|......
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE-- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence 4679999999999999999875 3579999995 499999999988763 357888877754321
Q ss_pred ccCCCccEEEEeccccCCc---------------C-------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 118 AVAPPFDYIIGTDVVYAEH---------------L-------LEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~---------------~-------~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
...+.||+|+++++..... . ...++....++|+|||.++.+...-
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1126799999987643221 1 2457888899999999988776543
No 121
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=96.62 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=82.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+..+||||||+|...+.+|... ..++|+|+ ..++..+.+++..++ ..++.+.+.|...... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g------------L~NV~~i~~DA~~ll~-~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN------------LKNLLIINYDARLLLE-LL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEECCHHHhhh-hC
Confidence 35699999999999999999874 56999999 459999999888776 3478888878653321 23
Q ss_pred cCCCccEEEEeccccCCcC------hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 119 VAPPFDYIIGTDVVYAEHL------LEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~------~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.++.+|.|+++-+.-|... ...++..+.++|+|||.+++.+-.
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3678999998754433221 268999999999999999997754
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=92.34 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=73.0
Q ss_pred CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.+|||+|||+|.+++.++.. +.+|+++|+++ +++.++++. .++.+.+.|..... .
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------------~~v~~v~~D~~e~~----~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------------PEAEWITSDVFEFE----S 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------------cCCEEEECchhhhc----c
Confidence 458999999999999888875 46899999954 988887753 13456666654321 2
Q ss_pred CCCccEEEEeccccCCc--C------------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 120 APPFDYIIGTDVVYAEH--L------------------LEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~--~------------------~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
...||+|++++++++.. . ..+++.....+|+|+|.+++++..+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 45799999999997621 1 2466667778899999988886543
No 123
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.17 E-value=2.9e-10 Score=87.48 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.+.|.+|||+.+|+|.+|+.+..+|+. ++++|.+. ++..+++|++..+. ..+.++...|-.......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL 109 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence 589999999999999999999999987 99999954 99999999887653 234555555544111111
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHH----HhcCCCcEEEEEEEec
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR 162 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~----~~l~~~g~i~i~~~~~ 162 (199)
...++||+|+..+| |....++.....+. .+|+|++.+++.....
T Consensus 110 ~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 110 GTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 11235999999766 55555533333333 5699999988876644
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=5.4e-10 Score=97.24 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=79.0
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.+|.+|||+|||+|..++.++..+ .+|+++|.++ ++..+++|+..++. .+.+...|.......
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence 367899999999999999999764 4799999954 99999999988763 246666665432110
Q ss_pred ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...++||.|+++++..... ....++....++|+|||.+++++.
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 1245799999887654210 124688889999999999988875
No 125
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.17 E-value=2.6e-10 Score=94.85 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=75.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.+.+|||+|||+|..+..++.. +.+|+++|+++ |++.+++++..... .-++...+.|+.+.....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence 4678999999999999888876 56799999965 99999988765321 124566777775432111
Q ss_pred c-c-CCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 A-V-APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~-~-~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
. . .+...++++..++++ ......+++.+.+.|+|||.++|....
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 1 0 112334444455655 445778999999999999999886643
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=99.16 E-value=1.7e-10 Score=91.96 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+.+|||+|||+|.+++.+++. ..+|+++|+++ +++.|++|.. .+.+...|+....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~~- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTTE- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhccc-
Confidence 3679999999999999998864 34799999955 9999997742 2455566654321
Q ss_pred ccccCCCccEEEEeccccCC------------cChHHHHHHHHHhcCCCcE
Q 029065 116 IKAVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTT 154 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~------------~~~~~~l~~l~~~l~~~g~ 154 (199)
..++||+||+|+|++.. .....++....+++++|+.
T Consensus 111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 24589999999998731 1255688888886666654
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-10 Score=88.31 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=76.8
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.-++.+|||||||+|..+-.+|+...+|+.+|. .+..+.|++|+...+ ..++.+.+.|-... ..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg------------~~nV~v~~gDG~~G---~~ 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG------------YENVTVRHGDGSKG---WP 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC------------CCceEEEECCcccC---CC
Confidence 336789999999999999999999889999998 669999999998887 44688887665322 23
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...+||.|+.... ...+=+.+.+.|++||++++-..
T Consensus 135 ~~aPyD~I~Vtaa------a~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAA------APEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeec------cCCCCHHHHHhcccCCEEEEEEc
Confidence 3579999987642 23333455667899999877554
No 128
>PRK04457 spermidine synthase; Provisional
Probab=99.15 E-value=5.2e-10 Score=91.33 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=85.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++++|||||||+|.++..++.. +.+|+++|+ +++++.|++++.... ...++++...|....- ..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----------~~~rv~v~~~Da~~~l--~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-----------NGERFEVIEADGAEYI--AV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-----------CCCceEEEECCHHHHH--Hh
Confidence 4679999999999999888765 457999999 559999998875432 1347888877764321 12
Q ss_pred cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCe
Q 029065 119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 179 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~ 179 (199)
..++||+|++.. +.... ....+++.+.+.|+|||.+++....+.. ....+++.+.+-|.
T Consensus 133 ~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 133 HRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 235899999852 21111 2379999999999999998875443333 23455566655553
No 129
>PTZ00146 fibrillarin; Provisional
Probab=99.14 E-value=1.6e-09 Score=89.03 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++.+|||||||+|..+..++.. + ..|+++|+++ +++.+...+... .++.+...|.......
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------------~NI~~I~~Da~~p~~y 196 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------------PNIVPIIEDARYPQKY 196 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCCEEEECCccChhhh
Confidence 46789999999999999999976 3 3699999854 554444433211 2456666665432212
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
....+.||+|++.-. .......++..+.++|+|+|.++|..+.+.
T Consensus 197 ~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 197 RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 222357999988753 344455667788999999999999766543
No 130
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=8e-10 Score=96.23 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=82.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+|.+|||+|||+|..+++++.. +.+|+++|+++ +++.+++|+...+. .++++...|......
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~-- 302 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE-- 302 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--
Confidence 5789999999999999888865 46799999955 99999999988763 357777777653321
Q ss_pred ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
...+.||.|++..+..... ...+++....++|+|||.++.++..-..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 2246799999876653321 1256688888999999999888875443
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=1.7e-09 Score=94.29 Aligned_cols=109 Identities=19% Similarity=0.126 Sum_probs=80.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 116 (199)
+|.+|||+|||+|..++.++.. ..+|+++|++ ++++.+++|+..++. .++++.+.|.......
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELK 319 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhccccc
Confidence 5789999999999999998875 2479999995 499999999998873 3577777776533211
Q ss_pred cccCCCccEEEEeccccC------CcC----------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KAVAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~------~~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
....+.||.|++..+... ..+ ...++....++|+|||.++.++..-
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 012457999998765422 111 3577888899999999987776543
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.14 E-value=1e-09 Score=89.72 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+|.+|||+|||+|..++.++.. ...|+++|++ .+++.+++|+..++. .++++...|.....
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~--- 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVFG--- 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHhh---
Confidence 5789999999999999988865 2479999995 499999999988863 35777776654221
Q ss_pred ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
...+.||.|++.++..... ....++....++|+|||.++.+...-..
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1234699999987654321 1245888888999999998887765443
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=4.5e-10 Score=92.10 Aligned_cols=94 Identities=11% Similarity=0.066 Sum_probs=68.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+.+|||+|||+|..+..++.. +..|+++|++. +++.|+++. .++.+...|..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~l-- 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRL-- 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccC--
Confidence 3468999999999988888754 23699999965 888886542 1456666665432
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+..++.||+|++... ...+..+.++|+|||.+++..+..
T Consensus 146 -p~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 146 -PFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -CCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 334678999997532 234678899999999999887654
No 134
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.13 E-value=2.8e-09 Score=85.10 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=85.1
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh--------CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 111 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~--------g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 111 (199)
.++.+|||++||||-++..+.+. +.+|+..|+ +++|..+++.....++. ...++.+...|-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~~dA- 168 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVEGDA- 168 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEeCCc-
Confidence 35689999999999988887754 256999999 55999998887654431 123466666554
Q ss_pred CCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 112 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 112 ~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
+.+++++..||....+--+....++++.++...|+|||||++++-.-
T Consensus 169 --E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 169 --EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred --ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 45567788999999998889999999999999999999999865443
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.12 E-value=4.2e-10 Score=90.40 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~ 116 (199)
+.++|||+|||+|..++.++.. ..+|+++|.+ ++++.|++|++.++. ..++++...|..+... +
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL 136 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence 5789999999999988877754 3579999995 599999999998875 3478888877754311 1
Q ss_pred c--ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 117 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 117 ~--~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
. ...++||+|+.... ...+..++..+.++|+|||.+++..
T Consensus 137 ~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 0 11468999988632 3566788999999999999877644
No 136
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.12 E-value=1.7e-09 Score=83.94 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 116 (199)
.+|.+|||+|||+|.++..++... .+|+++|+++.. . ...+++...|+.+....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhHHH
Confidence 467899999999999998888653 359999996632 1 12456666776543210
Q ss_pred ----cccCCCccEEEEecccc--C--Cc-------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEE
Q 029065 117 ----KAVAPPFDYIIGTDVVY--A--EH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 181 (199)
Q Consensus 117 ----~~~~~~fD~Ii~~~~~~--~--~~-------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 181 (199)
....+.||+|+++.+.+ . .. ....++..+.+.|+|||.+++....... ...++..+...|...
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~--~~~~l~~l~~~~~~~ 166 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE--IDEYLNELRKLFEKV 166 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc--HHHHHHHHHhhhceE
Confidence 12245799999865321 1 11 2367899999999999999886432211 345556655555433
Q ss_pred E
Q 029065 182 L 182 (199)
Q Consensus 182 ~ 182 (199)
.
T Consensus 167 ~ 167 (188)
T TIGR00438 167 K 167 (188)
T ss_pred E
Confidence 3
No 137
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.11 E-value=2.5e-10 Score=95.32 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=58.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEe-eeCCCcc-
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNEDH- 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~- 115 (199)
.+.+|||||||+|.+...++.. +.+++++|+++ +++.|++|++.| ++ ..++++... +..+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence 3579999999999777666643 67899999955 999999999998 54 345665431 2111110
Q ss_pred ccccCCCccEEEEeccccCCc
Q 029065 116 IKAVAPPFDYIIGTDVVYAEH 136 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~ 136 (199)
.....+.||+|++|+|+|...
T Consensus 183 i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 183 IIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ccccCCceEEEEeCCCCcCcc
Confidence 011246899999999988643
No 138
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=9e-10 Score=84.09 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||||||+|.++..++..+.+|+++|+++ +++.+++++... .++++.+.|..... ...
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~~ 75 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LPK 75 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---ccc
Confidence 467999999999999999998888899999955 999998876432 26788887775442 223
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHh--cCCCcEEEEEE
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGY 159 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~--l~~~g~i~i~~ 159 (199)
..||+|+++.+++. ...++..+... +.++|.+++-.
T Consensus 76 ~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence 46999999877543 23444444433 23566655543
No 139
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.10 E-value=1.2e-09 Score=93.20 Aligned_cols=123 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-ccc---
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--- 118 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~--- 118 (199)
.+|||++||+|.+++.+++...+|+++|.+ .+++.+++|+..|+. +++++...|...... ...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~ 275 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE 275 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence 579999999999999999887789999995 499999999998873 468888877754311 000
Q ss_pred ---------cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065 119 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 119 ---------~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 186 (199)
...+||+|+..+| + ......+++.+.+ +++.+|++-... .+.+=+..+..+|+++.+..-
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~---tlarDl~~L~~gY~l~~v~~~ 344 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPE---TLCENLETLSQTHKVERFALF 344 (362)
T ss_pred ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHH---HHHHHHHHHcCCcEEEEEEEc
Confidence 0125999999888 4 4556777777765 688899987652 222212233347888776543
No 140
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.3e-10 Score=85.16 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=65.4
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++|+.++|||||+|.+++..+..+++ |+|+|+ +++++.+++|++.-.. ++++.++|+....
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle-- 109 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLE-- 109 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchh--
Confidence 4689999999999999999888888877 999999 6699999999877643 4577777775443
Q ss_pred cccCCCccEEEEeccccC
Q 029065 117 KAVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~ 134 (199)
...+.||..+.++++--
T Consensus 110 -~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 110 -LKGGIFDTAVINPPFGT 126 (185)
T ss_pred -ccCCeEeeEEecCCCCc
Confidence 23478999999999854
No 141
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=84.98 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=87.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
+..-|||||||+|+-+..+...|...+++|++. ||+.|.+. +..+ ++..+|.+ +-.++..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg----------------dlil~DMG--~Glpfrp 110 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG----------------DLILCDMG--EGLPFRP 110 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc----------------CeeeeecC--CCCCCCC
Confidence 567899999999999999999998899999954 99999862 2222 55667777 3455667
Q ss_pred CCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCC
Q 029065 121 PPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF 178 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~ 178 (199)
+.||-+|+...+-+ ...+..|+.++...|++++...+-+...+..-.+.++... ..+|
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 89999887655422 1135667888999999999999988877665555554443 4444
No 142
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=3.3e-09 Score=92.76 Aligned_cols=123 Identities=20% Similarity=0.114 Sum_probs=86.4
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+|.+|||+|||+|..++.++.. +.+|+++|++. +++.+++++...+. .++++...|.....
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------------~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------------TIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------------CeEEEEeCcccccc--
Confidence 46789999999999988888864 35799999955 99999999988763 35777777764321
Q ss_pred cccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh----hHHHHH
Q 029065 117 KAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQM 170 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~----~~~~~~ 170 (199)
..+.||+|++..+..... ....++..+.++|+|||.+++++..-.+ .+...|
T Consensus 315 --~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~ 392 (445)
T PRK14904 315 --PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAF 392 (445)
T ss_pred --cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence 245799999764431110 1235888899999999999988865432 234455
Q ss_pred HHHHHhCCeE
Q 029065 171 LQMWKSNFNV 180 (199)
Q Consensus 171 ~~~~~~~~~v 180 (199)
++... +|.+
T Consensus 393 l~~~~-~~~~ 401 (445)
T PRK14904 393 LQRHP-EFSA 401 (445)
T ss_pred HHhCC-CCEE
Confidence 54322 3554
No 143
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.08 E-value=2.7e-11 Score=95.11 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=89.3
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+++||||||||+.+..+-.+..+.+++|+|+ |++.|.++-.-..+. .....++... ..+.+
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~--------------~Aea~~Fl~~----~~~er 188 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLY--------------VAEAVLFLED----LTQER 188 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHH--------------HHHHHHHhhh----ccCCc
Confidence 5899999999999999999888999999977 998886642111110 0000112211 23578
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhH------H------HHHHH-HH-HhCCeEEEecCCCc
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV------H------EQMLQ-MW-KSNFNVKLVPKAKE 188 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~------~------~~~~~-~~-~~~~~v~~~~~~~~ 188 (199)
||+|.+.|++-....+..++.....+|+|||.+.|+...-.... . +.+.. .+ ..+|++..+.+...
T Consensus 189 ~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 189 FDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred ccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence 99999999999999999999999999999999988865322110 1 12322 33 35788877766554
Q ss_pred C
Q 029065 189 S 189 (199)
Q Consensus 189 ~ 189 (199)
.
T Consensus 269 R 269 (287)
T COG4976 269 R 269 (287)
T ss_pred h
Confidence 3
No 144
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.04 E-value=3.2e-09 Score=90.22 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=86.0
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-c--
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-A-- 118 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~-- 118 (199)
+.+|||+|||+|.+|+.+++...+|+++|.+ ++++.|++|+..|+. .++++...|........ .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~ 265 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVR 265 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhcc
Confidence 3479999999999999999887789999995 599999999998863 46788887775422100 0
Q ss_pred -c---------CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065 119 -V---------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 185 (199)
Q Consensus 119 -~---------~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (199)
. ...||+|+..+| .......+++.+.+ +++.+|++-.... +.+=+..+..+|+++.+..
T Consensus 266 ~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~t---laRDl~~L~~~Y~l~~v~~ 334 (353)
T TIGR02143 266 EFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPET---LKANLEQLSETHRVERFAL 334 (353)
T ss_pred ccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHH---HHHHHHHHhcCcEEEEEEE
Confidence 0 124899999887 34556777777755 7889999876432 2221223334477776654
No 145
>PRK00811 spermidine synthase; Provisional
Probab=99.04 E-value=3.8e-09 Score=87.20 Aligned_cols=128 Identities=13% Similarity=0.012 Sum_probs=82.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++++||+||||.|..+..+.+. + .+|+++|++ .+++.|++.+...+... -...++++...|..... ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence 4679999999999999888876 4 469999995 59999999875432100 01346787777754321 12
Q ss_pred cCCCccEEEEec--cccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCC
Q 029065 119 VAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 178 (199)
Q Consensus 119 ~~~~fD~Ii~~~--~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~ 178 (199)
..++||+|++.. +..... ....+++.+++.|+|||.+++.... ..........+.+.+-|
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F 212 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF 212 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence 356899999852 221111 2377889999999999987764321 22333444445554434
No 146
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=3e-09 Score=89.11 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC---CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+|||+|||+|..+..+++.. ..|+++|.+ ++++.|++++..++ ..++.+...|.... .
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g------------~~nV~~i~gD~~~~---~ 144 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG------------IENVIFVCGDGYYG---V 144 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEeCChhhc---c
Confidence 56899999999999999999763 259999995 59999999988775 33577776664322 1
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....+||+|++... ...+...+.+.|+|||.+++...
T Consensus 145 ~~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 145 PEFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred cccCCccEEEECCc------hHHhHHHHHHhcCCCCEEEEEeC
Confidence 12357999998632 22334556788999999887543
No 147
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.01 E-value=1e-08 Score=89.27 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=81.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+|.+|||+|||+|..++.++.. + ++|+++|++ ++++.+++|+...+.. ..+.....|...... ..
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-----------~~v~~~~~d~~~~~~-~~ 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-----------IKAETKDGDGRGPSQ-WA 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----------eEEEEeccccccccc-cc
Confidence 5789999999999999998875 3 679999995 4999999999887631 122223333321111 01
Q ss_pred cCCCccEEEEeccccCC------cC----------------hHHHHHHHHHhcCCCcEEEEEEEec----ChhHHHHHHH
Q 029065 119 VAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILLGYEIR----STSVHEQMLQ 172 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~----~~~~~~~~~~ 172 (199)
..+.||.|++..+.... +. ...++....++|+|||.++.++..- +..+.+.|++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 24679999986553221 11 3578888999999999998887654 3334555655
Q ss_pred H
Q 029065 173 M 173 (199)
Q Consensus 173 ~ 173 (199)
.
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 4
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=4.4e-09 Score=83.41 Aligned_cols=128 Identities=14% Similarity=0.288 Sum_probs=82.4
Q ss_pred ccCCCCCCCCcEEEeCCCcChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhh---hccccC---------------
Q 029065 35 RFCPSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNT---SRISQM--------------- 93 (199)
Q Consensus 35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~---~~~~~~--------------- 93 (199)
.+....++++.+|||||-+|.+++.+|+. |++ |+|+|+.. .+..|++++.--. ..+...
T Consensus 51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~ 130 (288)
T KOG2899|consen 51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR 130 (288)
T ss_pred hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence 34556788999999999999999999975 776 99999955 8889988874211 111100
Q ss_pred CC-----CCCCCCcEEEEEee--eCCCccccccCCCccEEEEeccc------cCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 94 NP-----GSDLLGSIQAVELD--WGNEDHIKAVAPPFDYIIGTDVV------YAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 94 ~~-----~~~~~~~i~~~~~d--~~~~~~~~~~~~~fD~Ii~~~~~------~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
++ +.+-..++.+...+ .+..+.+......||+|+|-... ++++-+..+++.+.++|.|||++++.-+
T Consensus 131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 131 NEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred ccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 00 00000111111111 11111223345689999876554 3366799999999999999999888765
Q ss_pred ec
Q 029065 161 IR 162 (199)
Q Consensus 161 ~~ 162 (199)
.+
T Consensus 211 pW 212 (288)
T KOG2899|consen 211 PW 212 (288)
T ss_pred ch
Confidence 54
No 149
>PLN02476 O-methyltransferase
Probab=99.00 E-value=8.1e-09 Score=84.63 Aligned_cols=108 Identities=13% Similarity=0.192 Sum_probs=82.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 116 (199)
+.++|||||+|+|..++++|.. +.+|+.+|.+ +..+.|++|++..+. ..++++...|..+.. .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 4689999999999999999974 4569999994 599999999998875 347888877664321 11
Q ss_pred --cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 117 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 117 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
....+.||+|+.... ...+..+++.+.++|+|||.+++-....+
T Consensus 187 ~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 111358999998753 56788999999999999999776544433
No 150
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.99 E-value=3e-09 Score=82.91 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++++|||+|||+|..+..++.. +..++++|+++ +++.++. . .+++...|..... ....
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence 4679999999999998888754 56799999954 7766643 1 2355556654311 1123
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 151 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~ 151 (199)
.++||+|+++.++++..+...+++.+.+.+++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 56899999999999998999998888776653
No 151
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.98 E-value=1.8e-09 Score=85.75 Aligned_cols=141 Identities=20% Similarity=0.214 Sum_probs=92.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHH-hhh-ccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEW-NTS-RISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+||..|||.|...+.+|..|.+|+|+|+++ +++.+.+.... ... ..... ......+|++.+.|+..... .
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~--~~~~~~~i~~~~gDfF~l~~--~ 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF--KRYQAGRITIYCGDFFELPP--E 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE--EEETTSSEEEEES-TTTGGG--S
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce--eeecCCceEEEEcccccCCh--h
Confidence 456999999999999999999999999999966 88777332111 000 00000 00123468888888865432 1
Q ss_pred cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEE-EEEec-----Chh--H-HHHHHHHHHhCCeEEEecCC
Q 029065 119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS--V-HEQMLQMWKSNFNVKLVPKA 186 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i-~~~~~-----~~~--~-~~~~~~~~~~~~~v~~~~~~ 186 (199)
..++||+|+=..++.. ++...+..+.+.++|+|+|.+++ +.... .+. + .+.+.+.+..+|+++.+...
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~ 191 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE 191 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence 2358999998877754 77899999999999999999433 33211 111 1 44555666778998777653
No 152
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.97 E-value=3.8e-09 Score=90.56 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCcEEEeCCCcChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+.+|||++||+|..++.++.. ++ +|+++|++ .+++.+++|+..|+. +.+++.+.|.... ...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~--l~~- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANAL--LHE- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHH--Hhh-
Confidence 358999999999999999875 43 69999995 599999999999974 2455666665321 111
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.++||+|+.+++ .....++....+.++++|.+|++.
T Consensus 123 ~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred cCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 357999999653 445678888667789999999994
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.95 E-value=1.5e-08 Score=83.01 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=73.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++++||+||||+|..+..+++.. .+|+++|+++ +++.+++.+...+... ...++++...|.... ...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEECchHHH--HHh
Confidence 35699999999998887777664 4699999954 9999998764432100 023566665443211 111
Q ss_pred cCCCccEEEEeccccC--CcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~--~~~--~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..++||+|++..+... ... ...+++.+.+.|+|||.+++..
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 2468999998754221 112 4688899999999999988763
No 154
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.94 E-value=3.7e-09 Score=83.22 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~ 116 (199)
+.++||||||++|.-++.+|.. +++|+.+|. ++..+.|++++...+. .+++++...|..+... +
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence 4689999999999999999964 678999999 4588999999998875 3578988877653211 1
Q ss_pred ccc--CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 117 KAV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 117 ~~~--~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
... .++||+|+... ....+...+..+.++|++||.+++-...
T Consensus 114 ~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 111 35899999875 4577888999999999999987765543
No 155
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.94 E-value=4.4e-09 Score=83.04 Aligned_cols=100 Identities=24% Similarity=0.314 Sum_probs=70.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh-CC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.-+|.+|||||||+|..+..++.. |. .|+++|. +...+.|++++...+. .++.+...|....
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------------~nv~~~~gdg~~g-- 135 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------------DNVEVVVGDGSEG-- 135 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------------HSEEEEES-GGGT--
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------------CceeEEEcchhhc--
Confidence 346789999999999999888876 43 5999998 5599999999988763 3788888775322
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.....+||.|++.... ..+-..+.+.|++||++++-..
T Consensus 136 -~~~~apfD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 -WPEEAPFDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -TGGG-SEEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred -cccCCCcCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence 2235689999998543 2333446667899999877554
No 156
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.92 E-value=4.4e-09 Score=81.10 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+|.+|||||||.|.+-..+.. ++.++.|+|++. .+..|. .+ -+.+.+.|+.... ..+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~r---------------Gv~Viq~Dld~gL-~~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----AR---------------GVSVIQGDLDEGL-ADFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----Hc---------------CCCEEECCHHHhH-hhCC
Confidence 578999999999977666664 688899999844 333332 22 3467778876442 2355
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
+++||+||.+.++-....+..+++.+.+. |...+++.|+
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 78999999999998888888888887666 4466677654
No 157
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.88 E-value=1.7e-08 Score=79.81 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE-eeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~ 116 (199)
..++|||||++.|.-++++|.. ..+++.+|. ++..+.|++|+..-+. ..+++... +|+.+.-..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence 5789999999999999999964 346999999 5599999999998875 34566666 355422111
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
...++||+|+.. ......+.+++.+.++|+|||.+++-.-..
T Consensus 128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 235899999986 356789999999999999999876654333
No 158
>PRK03612 spermidine synthase; Provisional
Probab=98.86 E-value=4.6e-08 Score=87.18 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++++|||||||+|..+..+++.. .+|+++|++ ++++.++++......... .-..+++++...|.... ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence 46799999999999998888764 479999995 599999985322111000 00124677777765432 122
Q ss_pred cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHh-CCeE
Q 029065 119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNV 180 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~-~~~v 180 (199)
..++||+|+++.+..... .-.++++.+++.|+|||.+++.... ...+.+....+.+.+ +|.+
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 246899999974322211 2346899999999999998875432 123334455555554 4744
No 159
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.85 E-value=1.6e-08 Score=79.17 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+|..|+|+.||.|..++.+|+ .++.|+++|.+ .+++.+++|+.+|++ ...+...+.|......
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP--- 166 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG------
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC---
Confidence 578999999999999999998 56679999995 599999999999975 3468888888753321
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 156 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~ 156 (199)
.+.||.|+++.+ .....++.....+++++|.+.
T Consensus 167 -~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred -ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 678999999765 344467888888899888753
No 160
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.85 E-value=1.3e-08 Score=81.79 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=76.7
Q ss_pred CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.++|+|||+|.|..+..+++. +.+++..|.+++++.+++ . +++++...|+. +.. .
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~----~--------------~rv~~~~gd~f--~~~---P 157 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE----A--------------DRVEFVPGDFF--DPL---P 157 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH----T--------------TTEEEEES-TT--TCC---S
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc----c--------------cccccccccHH--hhh---c
Confidence 468999999999999999876 557999999998888877 1 27899998886 211 2
Q ss_pred CCccEEEEeccccC--CcChHHHHHHHHHhcCCC--cEEEEEEEec
Q 029065 121 PPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPK--TTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~--g~i~i~~~~~ 162 (199)
. +|+++...++++ .+....+++.+.+.|+|| |.++|.+...
T Consensus 158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 2 999999999977 556888999999999988 9999998863
No 161
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=8.6e-09 Score=81.69 Aligned_cols=113 Identities=16% Similarity=0.219 Sum_probs=82.8
Q ss_pred cEEEeCCCcChHHHHHHhh--C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccc
Q 029065 45 RVIELGAGCGVAGFGMALL--G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 118 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~--g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~ 118 (199)
+|||+|||.|.....+.+- . -.|.+.|.+ .+++..+.+..-+. .++.....|+.... ..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence 7999999999766555543 2 459999985 59999988775552 24555556665554 2234
Q ss_pred cCCCccEEEEecccc--CCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHH
Q 029065 119 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM 170 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~ 170 (199)
..+.+|+|++.=++- ++...+.++..+.++|||||.+++.+..+..-...+|
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 457899998765553 4678999999999999999999999988776544444
No 162
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.4e-07 Score=75.59 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
-....|++|||.|.|+|.++..+|+. | .+|+..|+ .+..+.|++|+...++ .+++.....|..+.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~ 158 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREG 158 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEecccccc
Confidence 34557899999999999999999974 4 46999999 6699999999988764 34477777777544
Q ss_pred ccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 114 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.. ...||.|+..- .++-.+++.+.++|+|||.+.+--|
T Consensus 159 ~~----~~~vDav~LDm-----p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 159 ID----EEDVDAVFLDL-----PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cc----ccccCEEEEcC-----CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 32 33899998853 5888999999999999998655444
No 163
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4.5e-08 Score=85.03 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=91.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+.+|||+-||.|.+|+.+|+...+|+|+|+ +++++.|++|++.|+. .++++...+-+.........
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i------------~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI------------DNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHHhhhcccc
Confidence 3568999999999999999999999999999 5599999999999984 46888877765544332223
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK 185 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~ 185 (199)
..+|.|+..+|= ...-..+++.+.++ +|..++|++-.. ..+.+-+..+ ..++.++++..
T Consensus 361 ~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP---~TlaRDl~~L~~~gy~i~~v~~ 420 (432)
T COG2265 361 YKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNP---ATLARDLAILASTGYEIERVQP 420 (432)
T ss_pred CCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCH---HHHHHHHHHHHhCCeEEEEEEE
Confidence 579999998763 22334666666655 677788997754 3334444444 45677776654
No 164
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.83 E-value=2.5e-08 Score=77.22 Aligned_cols=121 Identities=21% Similarity=0.315 Sum_probs=79.5
Q ss_pred cEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 45 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
+++|||+|.|.+|+.+|... .+|+.+|. ..-+...+..+..-+ .+++++.+...++ .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~------------L~nv~v~~~R~E~----~~~~~ 114 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG------------LSNVEVINGRAEE----PEYRE 114 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC------------CCCEEEEEeeecc----cccCC
Confidence 79999999999999999764 45999997 334444444444444 3368888866654 23467
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEEecC
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPK 185 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 185 (199)
.||+|++..+ ..+..++..+..+++++|.+++-......+........+.. +.++..+..
T Consensus 115 ~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 115 SFDVVTARAV----APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp -EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred CccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 8999999876 68899999999999999986665443333334444444432 344444443
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.82 E-value=1.8e-08 Score=82.06 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=59.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||||||+|.++..++..+.+|+++|+++ +++.+++++... .++++.+.|+....
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~----- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD----- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC-----
Confidence 4678999999999999999999988999999955 988888776431 26788888876432
Q ss_pred CCCccEEEEeccccC
Q 029065 120 APPFDYIIGTDVVYA 134 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~ 134 (199)
...||.|++|.+++.
T Consensus 89 ~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 LPEFNKVVSNLPYQI 103 (258)
T ss_pred chhceEEEEcCCccc
Confidence 235899999988654
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.82 E-value=3.3e-08 Score=81.19 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|.++..++..+.+|+++|+++ +++.+++++.. .++++.+.|+...... +
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~~---~ 103 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDLS---E 103 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCHH---H
Confidence 567999999999999999999888999999954 99988876532 2678888887654311 1
Q ss_pred CCccEEEEeccccC
Q 029065 121 PPFDYIIGTDVVYA 134 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~ 134 (199)
-.++.|++|.+++-
T Consensus 104 ~~~~~vv~NlPY~i 117 (272)
T PRK00274 104 LQPLKVVANLPYNI 117 (272)
T ss_pred cCcceEEEeCCccc
Confidence 11589999987554
No 167
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.80 E-value=3e-08 Score=84.75 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=75.9
Q ss_pred CcEEEeCCCcChHHHHHHhh--CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 44 KRVIELGAGCGVAGFGMALL--GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~--g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.+|||+.||+|..|+.+++. |+ +|+++|++ ++++.+++|+..|+. .++++.+.|..... ...
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~~ 111 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RYR 111 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HHh
Confidence 58999999999999999987 55 49999995 599999999999863 35666666654221 112
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..+||+|...+ |. ....++....+.++++|.++++-
T Consensus 112 ~~~fDvIdlDP--fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 112 NRKFHVIDIDP--FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCCEEEeCC--CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 35799999955 43 44578999999999999999984
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=3.4e-08 Score=86.25 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
+++.|||+|||+|.++..+++.+ .+|++++-+. +....++.+..|+ +.++|++.+.|.++.+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-----------w~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-----------WGDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-----------TTTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-----------CCCeEEEEeCcccCCC
Confidence 57899999999999998888775 2599999855 6655566556664 3568999998887654
Q ss_pred cccccCCCccEEEEecc--ccCCcChHHHHHHHHHhcCCCcE
Q 029065 115 HIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTT 154 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~--~~~~~~~~~~l~~l~~~l~~~g~ 154 (199)
. ..+.|+||+--+ +...+.....+....+.|+|+|+
T Consensus 255 l----pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 255 L----PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp H----SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred C----CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence 2 348999997532 33356777889999999999985
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.76 E-value=2.5e-08 Score=82.66 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=62.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++.+|||||||+|.++..++..+.+|+++|++. +++.+++++...+. ..++++.+.|+...+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~----- 98 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE----- 98 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc-----
Confidence 3567999999999999999999888999999955 99999998876532 347888888875432
Q ss_pred CCCccEEEEeccccCC
Q 029065 120 APPFDYIIGTDVVYAE 135 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~ 135 (199)
...||+|++|.+++..
T Consensus 99 ~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 FPYFDVCVANVPYQIS 114 (294)
T ss_pred ccccCEEEecCCcccC
Confidence 2468999998776654
No 170
>PLN02366 spermidine synthase
Probab=98.76 E-value=1.8e-07 Score=78.00 Aligned_cols=128 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+.++||+||||.|.....+++.. .+|+.+|+++ +++.+++.+...+.. -...++++...|....-. ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~ 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence 46899999999999888888763 4699999955 999999987542110 013478888777432211 11
Q ss_pred cCCCccEEEEeccccC-Cc---ChHHHHHHHHHhcCCCcEEEEEEE--ecChhHHHHHHHHHHhCC
Q 029065 119 VAPPFDYIIGTDVVYA-EH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF 178 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~-~~---~~~~~l~~l~~~l~~~g~i~i~~~--~~~~~~~~~~~~~~~~~~ 178 (199)
..++||+|++...--. .. .-..+++.+++.|+|+|.+.+-.. -........+.+.+...|
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 1468999998532111 11 245789999999999998755222 122334455556666555
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.74 E-value=5.9e-08 Score=78.47 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=79.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065 42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~ 116 (199)
..++|||||+++|.-++++|+. +++|+.+|. ++..+.|++++...+. ..+|++...+..+... +
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM 147 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence 4679999999999999999864 568999999 4588999999998875 4578888876643211 1
Q ss_pred cc---cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 117 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 117 ~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.. ..++||+|+... ....+...++.+.++|++||.+++-.
T Consensus 148 ~~~~~~~~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HhccccCCcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 00 126899999873 35677888899999999999866543
No 172
>PRK01581 speE spermidine synthase; Validated
Probab=98.74 E-value=6.3e-08 Score=81.87 Aligned_cols=107 Identities=19% Similarity=0.097 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHH---HhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..++||+||||.|.....+.+.. .+|+++|++ ++++.|+.... .+... -...++++...|....
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~f-- 219 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEF-- 219 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHH--
Confidence 35799999999998777777654 579999995 49999986221 11100 0134788877776532
Q ss_pred ccccCCCccEEEEeccccC-----CcChHHHHHHHHHhcCCCcEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
.....+.||+|++.-+--. .-.-..+++.+.+.|+|||++++.
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1223468999998732100 012367899999999999987664
No 173
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=1.2e-07 Score=74.77 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+++++|||+|.|++|+.+|... .+|+.+|. ..-+...+......+ .+++++.+...++...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~------------L~nv~i~~~RaE~~~~---- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG------------LENVEIVHGRAEEFGQ---- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC------------CCCeEEehhhHhhccc----
Confidence 6899999999999999999653 45999996 323333333333333 3367877755543321
Q ss_pred CCC-ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCCCcCc
Q 029065 120 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKEST 190 (199)
Q Consensus 120 ~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 190 (199)
..+ ||+|.+..+ .....+...+..++++||.+++-.-....+......... ..++.+..+..-..+.
T Consensus 132 ~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 132 EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence 123 999999776 789999999999999998764333233333334443333 3456776665555444
No 174
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.71 E-value=1.1e-07 Score=76.55 Aligned_cols=95 Identities=23% Similarity=0.167 Sum_probs=74.0
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.+..++||||+|.|-.+..++..-.+|++|+.+. |... +...|. . .....+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r----L~~kg~------------~--vl~~~~w~~~------ 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR----LSKKGF------------T--VLDIDDWQQT------ 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH----HHhCCC------------e--EEehhhhhcc------
Confidence 4567999999999999999999988999999976 5333 333332 1 1222345422
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
+.+||+|.+-+++=....+..+++.+++.|+|+|.++++-
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4589999999999888999999999999999999988774
No 175
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.68 E-value=3.2e-08 Score=78.53 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=68.6
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+.++|+|||+|..++.+|..-.+|+++|+++ ||+.|++.....-. +....+ ..-+. ..+...+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~---------~t~~~m--s~~~~---v~L~g~e~S 100 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC---------HTPSTM--SSDEM---VDLLGGEES 100 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc---------cCCccc--ccccc---ccccCCCcc
Confidence 3899999999988899998877899999955 99987664221110 001111 11010 111122679
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.|+|+++.++++. +.+.+.+.+.++|+++|-++....
T Consensus 101 VDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 101 VDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred eeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 9999999887654 678899999999998774444443
No 176
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.67 E-value=2.2e-07 Score=72.72 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=74.9
Q ss_pred cEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 45 RVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
.+||||||.|-..+.+|.. ...++|+|+ ...+..+...+...+ ..++.+.+.|.......-..++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------------l~Nv~~~~~da~~~l~~~~~~~ 87 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------------LKNVRFLRGDARELLRRLFPPG 87 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------------TSSEEEEES-CTTHHHHHSTTT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------------ccceEEEEccHHHHHhhcccCC
Confidence 8999999999988888876 445999998 557777777777665 5689999988765322223357
Q ss_pred CccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 122 PFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 122 ~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.+|-|..+ ||-.-.. .-..++..+.+.|+|||.+++.+-.
T Consensus 88 ~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 88 SVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp SEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred chheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 88988766 3321111 4678999999999999999987754
No 177
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.67 E-value=2e-07 Score=73.26 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=73.2
Q ss_pred CCCCcEEEeCCCcChHHHHHH-hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la-~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
..-.+.||.|||.|.++-.+. ....+|..+|. +..++.|++.+.... ....++.+....+. .+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~------------~~v~~~~~~gLQ~f---~P 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN------------PRVGEFYCVGLQDF---TP 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG------------CCEEEEEES-GGG------
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC------------CCcceEEecCHhhc---cC
Confidence 345799999999999997665 45556999998 559999987654421 11234555444322 23
Q ss_pred cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
..++||+|++-.++.| ..++..++..|+..|+|+|.|++-....
T Consensus 119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 3568999999999987 5678999999999999999998887653
No 178
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.65 E-value=1.1e-06 Score=71.03 Aligned_cols=107 Identities=18% Similarity=0.104 Sum_probs=75.8
Q ss_pred ccCCCCCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee
Q 029065 35 RFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 110 (199)
Q Consensus 35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 110 (199)
..-...-.|++|||-|.|+|.++.++++. | .+|+..|. .+..+.|++|+..+++ ..++.+.+.|+
T Consensus 33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv 101 (247)
T PF08704_consen 33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDV 101 (247)
T ss_dssp HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-G
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecce
Confidence 33445668999999999999999999975 3 47999999 5599999999999875 45889999888
Q ss_pred CCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhc-CCCcEEEE
Q 029065 111 GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILL 157 (199)
Q Consensus 111 ~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~~~g~i~i 157 (199)
...-........+|.|+..- ..+-..+..+.+.| ++||.+.+
T Consensus 102 ~~~g~~~~~~~~~DavfLDl-----p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDL-----PDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp GCG--STT-TTSEEEEEEES-----SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred ecccccccccCcccEEEEeC-----CCHHHHHHHHHHHHhcCCceEEE
Confidence 53211112246799988853 47778899999999 77776443
No 179
>PRK04148 hypothetical protein; Provisional
Probab=98.63 E-value=4.2e-07 Score=66.54 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=51.8
Q ss_pred CCCCcEEEeCCCcCh-HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~-~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.++++|||+|||+|. .+..++..|.+|+++|+++ +++.++.+ .+++...|+.+.+..
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------------------~~~~v~dDlf~p~~~-- 73 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------------------GLNAFVDDLFNPNLE-- 73 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------------------CCeEEECcCCCCCHH--
Confidence 356789999999996 9999999999999999955 76666554 246677777655422
Q ss_pred cCCCccEEEEecc
Q 029065 119 VAPPFDYIIGTDV 131 (199)
Q Consensus 119 ~~~~fD~Ii~~~~ 131 (199)
.-+.+|+|.+..+
T Consensus 74 ~y~~a~liysirp 86 (134)
T PRK04148 74 IYKNAKLIYSIRP 86 (134)
T ss_pred HHhcCCEEEEeCC
Confidence 1257888887643
No 180
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=3.7e-09 Score=85.74 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=95.5
Q ss_pred CCCceEEEeecCcceeeccccccccCccCCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHH-HHHHHHH
Q 029065 9 PSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPL-LKRNVEW 85 (199)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~-a~~~~~~ 85 (199)
|...+.++.+|.+.+.+........ -+...+.+|+|||+|||+|+.++.+...|+ .|.+.|++. +++. .-.|+..
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~--~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~ 162 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEI--GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILV 162 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHh--hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceec
Confidence 3445567777877777765532221 134567899999999999999999999984 599999854 6632 2222222
Q ss_pred hhhccccCCCCCCCCCcEEEEEe---eeCCCccccccCCCccEEEEeccccCCcChHHH-HHHHHHhcCCCcEEEEEEEe
Q 029065 86 NTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~~~g~i~i~~~~ 161 (199)
+...-. -.++....+...+- ||..... ..-.||+|.++.++|.....+.+ ......+++++|.+|++.+.
T Consensus 163 ~~~~~~---~~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 163 NSHAGV---EEKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred chhhhh---hhhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHh
Confidence 211000 00011112222233 5521110 01389999999999999988888 77888889999999998776
Q ss_pred cChhH
Q 029065 162 RSTSV 166 (199)
Q Consensus 162 ~~~~~ 166 (199)
-+..+
T Consensus 237 ~yFgV 241 (282)
T KOG2920|consen 237 LYFGV 241 (282)
T ss_pred hccCc
Confidence 55443
No 181
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.62 E-value=4.5e-07 Score=75.91 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=79.6
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~ 119 (199)
+|..|||=.||||-+-+.+...|++|+|+|+.. |++-|+.|+..-+. ....+... |..+ .+..
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i------------~~~~~~~~~Da~~---lpl~ 261 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI------------EDYPVLKVLDATN---LPLR 261 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc------------CceeEEEeccccc---CCCC
Confidence 578999999999999999999999999999965 99999999877642 12222222 4433 3333
Q ss_pred CCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 120 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
+..+|.|++.+|+--. +.+..+++.+.+.|++||.+.++.+
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4569999997775322 2378889999999999999988887
No 182
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.61 E-value=1.3e-07 Score=71.70 Aligned_cols=78 Identities=21% Similarity=0.049 Sum_probs=54.7
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
..|+|+.||.|-.++.+|+.+.+|+++|++ .-++.|+.|++.-|. .++|++.+.||.+..........
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB-----
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhcccccc
Confidence 369999999999999999999999999995 599999999988864 45899999999754321111122
Q ss_pred ccEEEEeccc
Q 029065 123 FDYIIGTDVV 132 (199)
Q Consensus 123 fD~Ii~~~~~ 132 (199)
||+|++++|.
T Consensus 70 ~D~vFlSPPW 79 (163)
T PF09445_consen 70 FDVVFLSPPW 79 (163)
T ss_dssp -SEEEE---B
T ss_pred ccEEEECCCC
Confidence 8999999887
No 183
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.60 E-value=7.3e-07 Score=75.83 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred cEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--------
Q 029065 45 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-------- 115 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 115 (199)
+|||+-||+|.+|+.+|..+.+|+|+|. .++++.|++|+..|+. .++++...+.++...
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~ 266 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREF 266 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GG
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHH
Confidence 7999999999999999999999999998 5599999999999984 478887765432210
Q ss_pred --cc---ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065 116 --IK---AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 185 (199)
Q Consensus 116 --~~---~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 185 (199)
.. .....+|+|+..||=-. .-..+++.+.+ ..-++|++-.+. .+.+=+..+.++|+++.+..
T Consensus 267 ~~~~~~~~~~~~~d~vilDPPR~G--~~~~~~~~~~~---~~~ivYvSCnP~---tlaRDl~~L~~~y~~~~v~~ 333 (352)
T PF05958_consen 267 NRLKGIDLKSFKFDAVILDPPRAG--LDEKVIELIKK---LKRIVYVSCNPA---TLARDLKILKEGYKLEKVQP 333 (352)
T ss_dssp TTGGGS-GGCTTESEEEE---TT---SCHHHHHHHHH---SSEEEEEES-HH---HHHHHHHHHHCCEEEEEEEE
T ss_pred HhhhhhhhhhcCCCEEEEcCCCCC--chHHHHHHHhc---CCeEEEEECCHH---HHHHHHHHHhhcCEEEEEEE
Confidence 00 11236899998776332 22455665544 356778876542 22222234456888876654
No 184
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=9.3e-08 Score=76.44 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=57.9
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHH-HHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPL-LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~-a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++++|||+|||+|.++..++..|+. |+++|++. ++.. .+.+..-.... ..+++ ..+|.+..
T Consensus 72 ~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----------~~ni~--~~~~~~~~- 138 (228)
T TIGR00478 72 IDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----------RTNIR--YVTPADIF- 138 (228)
T ss_pred CCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----------cCCcc--cCCHhHcC-
Confidence 4578999999999999999999999875 99999954 5543 22221100000 01122 23343221
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i 157 (199)
..-..+|+++++-. .++..+..+|++ |.+++
T Consensus 139 --~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 139 --PDFATFDVSFISLI--------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred --CCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence 11236777776532 357788888888 65443
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.60 E-value=1.7e-07 Score=72.38 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe-----------EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 109 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~-----------v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 109 (199)
++..|||-.||+|.+.+.++..+.. ++|.|++ ++++.+++|+...+. ...+.+.+.|
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~D 96 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQWD 96 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE--
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEecc
Confidence 4679999999999999999876443 6799995 599999999987764 3457787777
Q ss_pred eCCCccccccCCCccEEEEeccccCC--------cChHHHHHHHHHhcCCCcEEEEEE
Q 029065 110 WGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 110 ~~~~~~~~~~~~~fD~Ii~~~~~~~~--------~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..... ...+.+|+|++++|+... ..+..+++.+.+.+++ ..+++..
T Consensus 97 ~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 97 ARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred hhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 65443 345689999999887542 2356677788888888 3444433
No 186
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.55 E-value=1.4e-06 Score=73.21 Aligned_cols=103 Identities=20% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.|.+|||+.||.|..++.+|+.|+. |+++|++ .+++.+++|+.+|+. ...+...++|-.... ..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence 4899999999999999999999987 9999995 599999999999975 234777887765432 11
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.+.+|-|+.+-+. ....++......++++|.+.+-....
T Consensus 254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 2789999998653 44566777777777888765544433
No 187
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=7.7e-07 Score=67.36 Aligned_cols=85 Identities=11% Similarity=-0.035 Sum_probs=64.3
Q ss_pred EEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHH
Q 029065 68 ITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF 146 (199)
Q Consensus 68 ~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~ 146 (199)
+|+|+++ |++.|+++...... ....++++...|..+. +..++.||+|+++..+.+..+...+++.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 4799965 99999876543211 0123678888776543 344678999999988888889999999999
Q ss_pred HhcCCCcEEEEEEEecCh
Q 029065 147 ALSGPKTTILLGYEIRST 164 (199)
Q Consensus 147 ~~l~~~g~i~i~~~~~~~ 164 (199)
++|+|||.+++.+.....
T Consensus 69 rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 69 RVLKPGSRVSILDFNKSN 86 (160)
T ss_pred HHcCcCeEEEEEECCCCC
Confidence 999999999888765443
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.52 E-value=3e-07 Score=74.69 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++.+|||+|||+|.++..++..+.+|+++|+++ +++.++.+... ..++++.+.|+.....
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~~----- 89 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVDL----- 89 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCCh-----
Confidence 568999999999999999999998899999955 88888776532 2367788877754432
Q ss_pred CCcc---EEEEecccc
Q 029065 121 PPFD---YIIGTDVVY 133 (199)
Q Consensus 121 ~~fD---~Ii~~~~~~ 133 (199)
..|| +|+++-+++
T Consensus 90 ~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 PDFPKQLKVVSNLPYN 105 (253)
T ss_pred hHcCCcceEEEcCChh
Confidence 1355 788876643
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.49 E-value=6e-07 Score=75.63 Aligned_cols=119 Identities=13% Similarity=0.013 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCcCh-HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc---c
Q 029065 42 KGKRVIELGAGCGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~-~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~ 116 (199)
.+.+|||||||-|- +.-+....-..++|+|++. .++.|++.............+ .-.-...+...|...... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~--~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY--RFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS--EECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc--cccchhheeccccccchhhhhc
Confidence 67899999999764 5555444445699999955 889998877322110000000 000012333333322211 1
Q ss_pred cccCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.....+||+|=+=-.+++ ......++..+...|+|||.++.+++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 111358999976655543 3457779999999999999999888753
No 190
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.48 E-value=6.5e-07 Score=69.98 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=74.0
Q ss_pred cEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc----
Q 029065 45 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---- 117 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---- 117 (199)
+|||||||||-.+.++|..-.. ..-+|.+. .+.-++..+...+.. +... ...+|........
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--------Nv~~---P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--------NVRP---PLALDVSAPPWPWELPA 96 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--------ccCC---CeEeecCCCCCcccccc
Confidence 5999999999999999987554 66678854 555565555544421 1122 2334544432211
Q ss_pred -ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 118 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 118 -~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
...+.||.|++..+++- .+..+.+++...++|++||.+++=.|..
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 13468999999999876 4568899999999999999987766653
No 191
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.46 E-value=2.1e-06 Score=68.62 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=78.2
Q ss_pred CcEEEeCCCcChHHHHHHhhCCe--EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~--v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
..+||||||.|-.-+.+|....+ ++|+|+ ...+..|...+...+ ..++.+.+.|.......-..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~------------l~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG------------LKNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC------------CCcEEEEcCCHHHHHHhcCCC
Confidence 48999999999999999988765 999998 556777767666665 237787777765443333334
Q ss_pred CCccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 121 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
++.|-|..+ ||-.-.. -...+++.+.+.|+|||.+++++-..
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 588888766 3322111 36789999999999999999988553
No 192
>PLN02823 spermine synthase
Probab=98.42 E-value=4.2e-06 Score=70.63 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=80.6
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+.++||.||+|.|..+..+.+. + .+|+++|+ +++++.|++.+..+.... ...++++...|-...- ..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~--------~dprv~v~~~Da~~~L--~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF--------CDKRLELIINDARAEL--EK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc--------cCCceEEEEChhHHHH--hh
Confidence 4579999999999888877765 3 46999999 459999998875442100 1347777776654322 22
Q ss_pred cCCCccEEEEec--ccc-CC---cChHHHHH-HHHHhcCCCcEEEEEEEe----cChhHHHHHHHHHHhCC
Q 029065 119 VAPPFDYIIGTD--VVY-AE---HLLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNF 178 (199)
Q Consensus 119 ~~~~fD~Ii~~~--~~~-~~---~~~~~~l~-~l~~~l~~~g~i~i~~~~----~~~~~~~~~~~~~~~~~ 178 (199)
..++||+|+..- +.- .. -.-..+++ .+++.|+|+|.+++-... ..........+.+.+-|
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF 243 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF 243 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence 356899999862 110 00 12346777 899999999987654221 12233444555555544
No 193
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.37 E-value=1.7e-06 Score=68.55 Aligned_cols=128 Identities=20% Similarity=0.193 Sum_probs=88.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
+|.+|||-..|-|-.++.+.++|| .|+.++.+ .+++.|..|-=..++. ...|++...|..+. .....
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~-V~~~~ 202 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEV-VKDFD 202 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHH-HhcCC
Confidence 588999999999999999999999 69999984 4888886653111110 11356665554322 11234
Q ss_pred CCCccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEE--EEEEEe---cChhHHHHHHHHHHh-CCeE
Q 029065 120 APPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTI--LLGYEI---RSTSVHEQMLQMWKS-NFNV 180 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i--~i~~~~---~~~~~~~~~~~~~~~-~~~v 180 (199)
+.+||+||-.++=+..+ .-..|.+.+.++|+|||++ |+..+. |..++.....+.+.+ +|++
T Consensus 203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 67899999888776633 4567889999999999986 555554 344556666677754 7874
No 194
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.36 E-value=2.7e-06 Score=70.37 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCcC-hHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCC--cc
Q 029065 42 KGKRVIELGAGCG-VAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G-~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~ 115 (199)
...++||||+|.- ..++..++. |-+++|+|+++ .++.|++|+..| ++ .++|++....=... ..
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTT
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchh
Confidence 3568999999985 556666654 78899999955 999999999999 54 45777765431111 11
Q ss_pred ccccCCCccEEEEeccccCCc
Q 029065 116 IKAVAPPFDYIIGTDVVYAEH 136 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~ 136 (199)
.....+.||+.+|++|+|...
T Consensus 171 i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 171 IIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp STT--S-EEEEEE-----SS-
T ss_pred hhcccceeeEEecCCccccCh
Confidence 112235899999999999854
No 195
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=7.9e-06 Score=73.05 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=80.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC----------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 110 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g----------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 110 (199)
...+|||.+||+|.+.+.++... ..+++.|+++ +++.++.++...+. ..+.+...|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence 45699999999998777776432 3489999955 99999988765531 0123333332
Q ss_pred CCCcc--ccccCCCccEEEEeccccCCcC----------------------------------------------hHHH-
Q 029065 111 GNEDH--IKAVAPPFDYIIGTDVVYAEHL----------------------------------------------LEPL- 141 (199)
Q Consensus 111 ~~~~~--~~~~~~~fD~Ii~~~~~~~~~~----------------------------------------------~~~~- 141 (199)
..... .....+.||+||+|+|+-.... +..+
T Consensus 99 l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f 178 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF 178 (524)
T ss_pred ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence 21110 0112358999999999853210 1112
Q ss_pred HHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeEEEec
Q 029065 142 LQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNVKLVP 184 (199)
Q Consensus 142 l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~~~ 184 (199)
++...++|+++|.+.+..|.. .......+.+.+.....+..+.
T Consensus 179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~ 223 (524)
T TIGR02987 179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQ 223 (524)
T ss_pred HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEE
Confidence 356778899999988877753 1222345666666656665443
No 196
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.32 E-value=2.9e-06 Score=70.09 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=75.7
Q ss_pred CCcEEEeCCCcC----hHHHHHHhh------CCeEEEeechh-HHHHHHHHHHH----hhhc----cccCCCC-------
Q 029065 43 GKRVIELGAGCG----VAGFGMALL------GCNVITTDQIE-VLPLLKRNVEW----NTSR----ISQMNPG------- 96 (199)
Q Consensus 43 ~~~VLdlGcG~G----~~sl~la~~------g~~v~~~D~~~-~l~~a~~~~~~----~~~~----~~~~~~~------- 96 (199)
..+|+-.||.|| .+++.+... ..+|+|+|++. +++.|+.-+-. .+.+ -+.+.+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 244444432 13599999965 99999775311 1110 0112111
Q ss_pred ----CCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 97 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 97 ----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
+.....|.+...|..+.. ....+.||+|+|.+++.+ .+....+++.+.+.|+|||.+++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~--~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ--WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC--CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 122355777777775422 112468999999887744 5678999999999999999877755
No 197
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=4.1e-06 Score=77.31 Aligned_cols=108 Identities=13% Similarity=0.036 Sum_probs=75.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--------------------------------------------CeEEEeech-hHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--------------------------------------------CNVITTDQI-EVL 76 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--------------------------------------------~~v~~~D~~-~~l 76 (199)
.+..++|-+||+|.+.+.+|..+ .+++|+|++ .++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 36799999999999998887531 258999995 599
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC----cChHHHHHHHHHhcC--
Q 029065 77 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG-- 150 (199)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~-- 150 (199)
+.|+.|+..++. ...+.+.+.|+.+.... ...+.||+|++|+|+... .....+...+-+.++
T Consensus 270 ~~A~~N~~~~g~-----------~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 270 QAARKNARRAGV-----------AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHcCC-----------CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 999999999875 34678888887654321 113579999999887542 233344444444433
Q ss_pred -CCcEEEEEEEe
Q 029065 151 -PKTTILLGYEI 161 (199)
Q Consensus 151 -~~g~i~i~~~~ 161 (199)
+|+.+++....
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 77777666553
No 198
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.31 E-value=4.2e-07 Score=71.08 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCcCh----HHHHHHhh----C---CeEEEeechh-HHHHHHHHH-HHh---hhc----cccCCC------
Q 029065 42 KGKRVIELGAGCGV----AGFGMALL----G---CNVITTDQIE-VLPLLKRNV-EWN---TSR----ISQMNP------ 95 (199)
Q Consensus 42 ~~~~VLdlGcG~G~----~sl~la~~----g---~~v~~~D~~~-~l~~a~~~~-~~~---~~~----~~~~~~------ 95 (199)
+..+|+-.||++|- +++.+... . .+++|||++. +++.|++-+ ..+ +.+ -+.+.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34699999999993 44444441 2 3699999965 999887632 111 110 011111
Q ss_pred --CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 96 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 96 --~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.+..-..+.+...|..+ .....+.||+|+|.+++.+ ......+++.+.+.|+|||.+++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 12223468888888875 2234578999999988843 56788999999999999999988543
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=6.4e-07 Score=70.87 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=77.3
Q ss_pred CCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
...++|||||-|.++.++...|- +++.+|.+. |++.++..-. ++. ...... .+.+.++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-------------~~~~~v---~DEE~Ldf~e 135 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-------------ETSYFV---GDEEFLDFKE 135 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-------------EEEEEe---cchhcccccc
Confidence 35799999999999988887765 499999866 8887766421 211 122222 2334445567
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
+++|+|+++-.++|..+++..+..|+..|||+|.++-+.-.
T Consensus 136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhc
Confidence 89999999999999999999999999999999987766543
No 200
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.27 E-value=2e-05 Score=64.52 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=96.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+..+||||-||.|..=+-+... . ..|+..|+++ .++..+..++.+++. ..+++.+.|..+...+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----------~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----------DIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----------cceEEEecCCCCHhHh
Confidence 3469999999999754433322 2 3599999965 889999999888752 3448888888777666
Q ss_pred cccCCCccEEEEeccccCC---cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh--CCeEEEecCCCcCc
Q 029065 117 KAVAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVKLVPKAKEST 190 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 190 (199)
.......++++.++.+-.. ..+...+..+...+.|||.++.+.+.++++ .+.+...+.. +-+.|....++..+
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-hHHHHHHHhcccCCCceEEEecCHHH
Confidence 6667789999999887432 336778889999999999999988888886 3333344432 22345555555443
No 201
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.26 E-value=9.2e-06 Score=67.75 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCcChHHHHHHh---------hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065 42 KGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 111 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~---------~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 111 (199)
.+.+|||-.||+|.+-+.+.. ....++|.|+.. ++..|+.|+..++.. .....+...|..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~~d~l 115 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQGDSL 115 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEES-TT
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------cccccccccccc
Confidence 466899999999987666665 245699999954 888998888776543 122345555543
Q ss_pred CCccccccCCCccEEEEeccccCC--c-------------------ChHHHHHHHHHhcCCCcEEEEEEEecC---hhHH
Q 029065 112 NEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILLGYEIRS---TSVH 167 (199)
Q Consensus 112 ~~~~~~~~~~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~---~~~~ 167 (199)
..... .....||+|++++|+-.. . .--.++..+.+.|+++|.+.+..+..- ....
T Consensus 116 ~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~ 194 (311)
T PF02384_consen 116 ENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSE 194 (311)
T ss_dssp TSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHH
T ss_pred ccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchH
Confidence 22211 114689999999998433 0 012477888899999999877777531 1123
Q ss_pred HHHHHHHHhCCeEE
Q 029065 168 EQMLQMWKSNFNVK 181 (199)
Q Consensus 168 ~~~~~~~~~~~~v~ 181 (199)
..+.+.+.+.+.++
T Consensus 195 ~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 195 KKIRKYLLENGYIE 208 (311)
T ss_dssp HHHHHHHHHHEEEE
T ss_pred HHHHHHHHhhchhh
Confidence 45556665544443
No 202
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=7.7e-06 Score=63.86 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEeCCCcChHHHHHHhh-CCe---EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 38 PSKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~~sl~la~~-g~~---v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
+.+.+|.+.||+|+|+|.++-.++++ |+. ++|+|. +++++.+++|+......-.. +..=...++.++..|...
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVVGDGRK 155 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEeCCccc
Confidence 44668999999999999888777754 443 599996 88999999998765311000 000012345666555432
Q ss_pred CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
......+||.|.+. .....+.+.+...|+++|.+++--.
T Consensus 156 ---g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 156 ---GYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ---cCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence 22345789999876 4566777778888899998877543
No 203
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.23 E-value=5.1e-06 Score=68.72 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=73.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc---cc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~ 116 (199)
++..+++||||.|-.-+-.-+.|.. ++++|+++ .++.|+........... +-.=...+...|..... ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~------~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK------KFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh------cccceeEEEEeccchhHHHHhc
Confidence 5779999999998665655566765 99999977 88888876654321100 00012455555543322 12
Q ss_pred cccCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.+.+++||+|=+-=+++. .+...-++..+...|+|||.++-+.|..
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 223445999855444432 4457778899999999999977777654
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=98.22 E-value=3.9e-05 Score=62.54 Aligned_cols=119 Identities=8% Similarity=-0.069 Sum_probs=80.6
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
+.++||=||.|-|.....+.+...+|+.+|+.+ +++.+++-+..... +.. .+++++.. +. .....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~------DpRv~l~~--~~----~~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHE--VKN------NKNFTHAK--QL----LDLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHH--hhc------CCCEEEee--hh----hhccC
Confidence 358999999999998999988866899999955 99999985543221 112 23566553 21 11123
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE--ecChhHHHHHHHHHHhCCe
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFN 179 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~--~~~~~~~~~~~~~~~~~~~ 179 (199)
+.||+||... . ....+.+.+++.|+|+|++..-.. .-..+.+....+.++..|.
T Consensus 138 ~~fDVIIvDs-~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 138 KKYDLIICLQ-E----PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CcCCEEEEcC-C----CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 6899999753 3 346788999999999998766332 2223445555566666665
No 205
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.9e-06 Score=72.08 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc--cccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~ 118 (199)
.++.+||+-||||++|+.+|+...+|+|+++ +++++-|+.|+..|+. ++.++...--++.- ....
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------------sNa~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI------------SNATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc------------cceeeeecchhhccchhccc
Confidence 5789999999999999999999889999998 5599999999999984 46677764221110 0011
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.-+.=+++...|+-. ......++..+..+-++.-.+|++-...
T Consensus 451 ~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred CCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHH
Confidence 112334444444432 5678899999999988988899987654
No 206
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.17 E-value=5.6e-06 Score=67.66 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=77.5
Q ss_pred CCCcEEEeCCCcC--h--HHHHHHhhC-------CeEEEeechh-HHHHHHHHH-H-H---hhhcc----ccCCC-----
Q 029065 42 KGKRVIELGAGCG--V--AGFGMALLG-------CNVITTDQIE-VLPLLKRNV-E-W---NTSRI----SQMNP----- 95 (199)
Q Consensus 42 ~~~~VLdlGcG~G--~--~sl~la~~g-------~~v~~~D~~~-~l~~a~~~~-~-~---~~~~~----~~~~~----- 95 (199)
...+|+-.||+|| . +++.+...+ .+|+++|++. +|+.|+.=+ . . .+++. +.+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 3 444444332 3599999965 999996522 1 1 11111 11211
Q ss_pred ---CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccc-c-CCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 96 ---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-Y-AEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 96 ---~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~-~-~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.+.....|.+...|...... ..+.||+|+|-+++ | +......++..+...|+|||.+++....
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 12333456777776654421 46789999999887 3 3667889999999999999999986653
No 207
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.12 E-value=2.9e-06 Score=66.82 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCCcEEEeCCCcChHHHHHHh-hCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~-~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++..++|||||.|..-+.+|. .+++ .+|+++ +...+.|+..........+ ..+.....+++.+.|+.+.+....
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~---~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK---HYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH---HCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH---HhhcccccceeeccCccccHhHhh
Confidence 467999999999987776663 4665 999998 4455555443322110000 000113456666766654332211
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHH---HHHHHHHhCCeEEEecCCCcCcccCCC
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWGNP 195 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (199)
.-..-|+|+++...|.......+ ..+...|++|..|+ +...-.+.-.+ +-...+..-++++........=.|.+.
T Consensus 119 ~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt~~ 196 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWTSN 196 (205)
T ss_dssp HGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTCSS
T ss_pred hhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeecCC
Confidence 12457999999988776655555 45555678877654 44332221111 011112233566665555554466555
Q ss_pred CCCC
Q 029065 196 LGLY 199 (199)
Q Consensus 196 ~~~~ 199 (199)
.|.|
T Consensus 197 ~~~y 200 (205)
T PF08123_consen 197 SGPY 200 (205)
T ss_dssp B-EE
T ss_pred CcCE
Confidence 5543
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1e-05 Score=65.58 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=58.2
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
+.+|||||+|.|.++..++..+++|+++++.. +++..++.... ..++++.+.|....+.....
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l~-- 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSLA-- 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhhc--
Confidence 67999999999999999999999999999955 77777766541 34788888887655422111
Q ss_pred CccEEEEeccccC
Q 029065 122 PFDYIIGTDVVYA 134 (199)
Q Consensus 122 ~fD~Ii~~~~~~~ 134 (199)
.++.|++|=|++-
T Consensus 95 ~~~~vVaNlPY~I 107 (259)
T COG0030 95 QPYKVVANLPYNI 107 (259)
T ss_pred CCCEEEEcCCCcc
Confidence 6889999877544
No 209
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.11 E-value=2.4e-05 Score=61.28 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.++..|-|+|||-+.++..+. .+.+|...|+-.. | + .+..+|..+. +..+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------n--------------~--~Vtacdia~v---PL~~ 120 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------N--------------P--RVTACDIANV---PLED 120 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------S--------------T--TEEES-TTS----S--T
T ss_pred CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------C--------------C--CEEEecCccC---cCCC
Confidence 346799999999998774432 3456999995220 1 1 2334666433 3346
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEE
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKL 182 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~ 182 (199)
+..|++|.+=.+ ...++..++....|.|++||.++|+.-....+....|.+.+.. ||+++.
T Consensus 121 ~svDv~VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 121 ESVDVAVFCLSL-MGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp T-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred CceeEEEEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 789999886443 3468899999999999999999999987666556788888754 677653
No 210
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.11 E-value=7.2e-05 Score=60.59 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=84.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+.++||=||.|.|.....+.+.. .+|+++|++ .+++.|++-+...... -..+++++...|-... ...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence 57899999999999888888764 569999995 5999998876554311 0135788877665322 122
Q ss_pred cCC-CccEEEEeccc--cCC--cChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCe
Q 029065 119 VAP-PFDYIIGTDVV--YAE--HLLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN 179 (199)
Q Consensus 119 ~~~-~fD~Ii~~~~~--~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~ 179 (199)
... +||+|+...+- ... -.-..+++.+++.|+|+|.+.+-.... .........+.+...|.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 234 89999985322 111 135789999999999999987765432 23334555556666554
No 211
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.09 E-value=9.5e-05 Score=65.16 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=76.3
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
-+|.+|||++||+|-=+.++|.. + ..|++.|++. -++.+++|+++.+. .++.+.+.|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhh--
Confidence 36789999999999888777754 2 3699999954 88999999998873 35666665543221
Q ss_pred cccCCCccEEEEeccccCC------c----------------ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 117 KAVAPPFDYIIGTDVVYAE------H----------------LLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~------~----------------~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
......||.|+...+.-.. . .-..++....++|+|||.++-++..-.
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 1123579999976554211 1 126677888889999999877776533
No 212
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.08 E-value=2.4e-05 Score=59.08 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe---EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~---v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~ 116 (199)
.|+-|||+|.|||+++-.+.++|.+ ++++++ .+......+.. +..++.++|-.+.+ .+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------------p~~~ii~gda~~l~~~l 110 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------------PGVNIINGDAFDLRTTL 110 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------------CCccccccchhhHHHHH
Confidence 5789999999999999999888753 999998 45555544432 12233444433332 11
Q ss_pred c-ccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065 117 K-AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 117 ~-~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i 157 (199)
. ...+.||.|++.=++-.- ..-..+++.+...|..||.++-
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 1 224579999999777653 3456779999999999887544
No 213
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.08 E-value=3.4e-06 Score=64.86 Aligned_cols=113 Identities=22% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC---cc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~ 115 (199)
++.+||||||++|-++..+...+ .+|+++|+..+-+ ...+.....|..+. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----------------------~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----------------------LQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----------------------TTEEBTTGGGEEEEHSHH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----------------------ccceeeeecccchhhHHHh
Confidence 45899999999999999999887 5699999844300 01112222222111 11
Q ss_pred cc----ccCCCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCC
Q 029065 116 IK----AVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 178 (199)
Q Consensus 116 ~~----~~~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~ 178 (199)
.. ...+.||+|++...... .......+......|++||.+++..-.... . +.+...+...|
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~-~-~~~~~~l~~~F 156 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE-I-EELIYLLKRCF 156 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT-S-HHHHHHHHHHH
T ss_pred hhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc-H-HHHHHHHHhCC
Confidence 11 11268999998763322 112344444556678999987665543222 2 35555555444
No 214
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.06 E-value=5e-05 Score=64.63 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=77.8
Q ss_pred CCcEEEeCCCcChHHHHHHhhCC-----------------------------------------eEEEeech-hHHHHHH
Q 029065 43 GKRVIELGAGCGVAGFGMALLGC-----------------------------------------NVITTDQI-EVLPLLK 80 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~-----------------------------------------~v~~~D~~-~~l~~a~ 80 (199)
+..++|=-||+|.+.+.+|..+. .++|+|++ .+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 46899999999999999998874 27799995 5999999
Q ss_pred HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC----Cc----ChHHHHHHHHHhcCCC
Q 029065 81 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPK 152 (199)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~----~~~~~l~~l~~~l~~~ 152 (199)
.|+...+. .+.|++.+.|....... -..+|+||+|+|+-. .. .+..+.+.+++.++--
T Consensus 272 ~NA~~AGv-----------~d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 272 ANARAAGV-----------GDLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred HHHHhcCC-----------CceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 99999876 56789998887654321 268999999988632 11 3455666666777665
Q ss_pred cEEEEEEE
Q 029065 153 TTILLGYE 160 (199)
Q Consensus 153 g~i~i~~~ 160 (199)
+..+|+..
T Consensus 338 s~~v~tt~ 345 (381)
T COG0116 338 SRYVFTTS 345 (381)
T ss_pred ceEEEEcc
Confidence 66555543
No 215
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.06 E-value=3.2e-05 Score=62.31 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=75.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
....|.|+|||-+-++. ..-..|...|+-.+ +-++..+|..+. +..++
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~--------------------------~~~V~~cDm~~v---Pl~d~ 227 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV--------------------------NERVIACDMRNV---PLEDE 227 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeecC--------------------------CCceeeccccCC---cCccC
Confidence 46799999999986554 44566999995221 124445676543 34478
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 181 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~ 181 (199)
..|++|.+=.+ ...++.+++....++|++||.+||+.-.........|.+.+. -||.+.
T Consensus 228 svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 228 SVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred cccEEEeeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 99998876443 356889999999999999999999987655544556777764 366553
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.04 E-value=4.3e-05 Score=68.07 Aligned_cols=107 Identities=12% Similarity=0.036 Sum_probs=73.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+..+||||||.|-..+.+|.... .++|+|+ ...+..+.+.+...+ ..++.+...|....... .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~------------l~N~~~~~~~~~~~~~~-~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN------------ITNFLLFPNNLDLILND-L 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC------------CCeEEEEcCCHHHHHHh-c
Confidence 357999999999999999998755 4999998 445555555555444 34676665554322111 2
Q ss_pred cCCCccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 119 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 119 ~~~~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..+++|-|..+ ||..-.. .-..+++.+.++|+|||.+++.+-.
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 35678988766 3332211 3678999999999999999997754
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=2e-05 Score=62.34 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=75.6
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-c
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-H 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~ 115 (199)
...+++||||.-||.-++..|.. +.+|+++|+++ ..+.+.+-....+.. .+|++.+..-.+.. .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----------~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----------HKITFIEGPALESLDE 140 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----------ceeeeeecchhhhHHH
Confidence 35789999999999766666654 78899999955 888887777777653 36666664432221 1
Q ss_pred c--cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 116 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 116 ~--~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
+ ....+.||.++.. .+..+.......+.+++++||++++-.
T Consensus 141 l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 1 1224689999886 345667788999999999999877654
No 218
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.99 E-value=0.00036 Score=55.87 Aligned_cols=133 Identities=18% Similarity=0.221 Sum_probs=80.2
Q ss_pred cCCCCCCCCcEEEeCCCcChHHHHHHh--hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 36 FCPSKLKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 36 ~~~~~~~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
....++.|++||=+|=+- +.|+.+|. ...+|+.+|+.+ +++..++.+...++ .|+....|+.+
T Consensus 38 ~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------------~i~~~~~DlR~ 103 (243)
T PF01861_consen 38 AERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------------PIEAVHYDLRD 103 (243)
T ss_dssp HHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------------EEEE---TTS
T ss_pred HhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------------ceEEEEecccc
Confidence 366778999999999543 45666664 356799999966 99999999888875 48888888875
Q ss_pred CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCc-EEEEEEEecC--hhHHHHHHHHH-HhCCeEEEec
Q 029065 113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT-TILLGYEIRS--TSVHEQMLQMW-KSNFNVKLVP 184 (199)
Q Consensus 113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g-~i~i~~~~~~--~~~~~~~~~~~-~~~~~v~~~~ 184 (199)
... ....+.||+++..+| |-.+...-|+......|+..| ..|++...+. ......+.+.+ ..+|-++.+-
T Consensus 104 ~LP-~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 104 PLP-EELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp ----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred cCC-HHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence 531 223579999999654 777888899999999998655 7899998876 33233343333 3467665543
No 219
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.99 E-value=5.9e-06 Score=72.08 Aligned_cols=141 Identities=10% Similarity=0.051 Sum_probs=81.1
Q ss_pred cccCCCCCCceEEEeecCcceeeccccccccCc-cCCCCCCC---CcEEEeCCCcChHHHHHHhhCCeEEEe---echh-
Q 029065 3 ADRLNSPSTSVINLEVLGHQLQFSQEKNCRKGR-FCPSKLKG---KRVIELGAGCGVAGFGMALLGCNVITT---DQIE- 74 (199)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~VLdlGcG~G~~sl~la~~g~~v~~~---D~~~- 74 (199)
.++|..-......|+-.|..|--+-..=.+.+. .-|....+ ..+||+|||+|..+..+..++-.+..+ |..+
T Consensus 74 ~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 74 DQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred cccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 455666666666666555443322110000000 11221222 389999999999999998887764444 3222
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC-CcChHHHHHHHHHhcCCCc
Q 029065 75 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKT 153 (199)
Q Consensus 75 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g 153 (199)
..+.|. ..|++ .+ +.......++++.+.||+|.++.+.-. ...-.-++-.+.|+|+|||
T Consensus 154 qvqfal----eRGvp------------a~----~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 154 QVQFAL----ERGVP------------AM----IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred hhhhhh----hcCcc------------hh----hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 222221 12211 00 111112345677889999999988854 3333457888999999999
Q ss_pred EEEEEEEecC
Q 029065 154 TILLGYEIRS 163 (199)
Q Consensus 154 ~i~i~~~~~~ 163 (199)
.++++.+..+
T Consensus 214 yfv~S~ppv~ 223 (506)
T PF03141_consen 214 YFVLSGPPVY 223 (506)
T ss_pred eEEecCCccc
Confidence 9999988644
No 220
>PRK10742 putative methyltransferase; Provisional
Probab=97.97 E-value=7.8e-05 Score=60.09 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=56.7
Q ss_pred cEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCC-CCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSD-LLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+|||+-+|+|..++.++.+|++|+++|.+. +....+.++...... ..... ...++++.+.|..... ......
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~----~~~~~~~~~ri~l~~~da~~~L--~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD----AEIGGWLQERLQLIHASSLTAL--TDITPR 164 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc----cccchhhhceEEEEeCcHHHHH--hhCCCC
Confidence 899999999999999999999999999855 777777777663110 00001 1145676665554322 112347
Q ss_pred ccEEEEeccccC
Q 029065 123 FDYIIGTDVVYA 134 (199)
Q Consensus 123 fD~Ii~~~~~~~ 134 (199)
||+|...+++-+
T Consensus 165 fDVVYlDPMfp~ 176 (250)
T PRK10742 165 PQVVYLDPMFPH 176 (250)
T ss_pred CcEEEECCCCCC
Confidence 999998665544
No 221
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.95 E-value=4.2e-05 Score=62.04 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=57.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
+...|||+|.|||.++..+...|++|+++++ +.++...++..+.. +....+++..+|+...+ .
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-----------p~~~kLqV~~gD~lK~d-----~ 121 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-----------PKSGKLQVLHGDFLKTD-----L 121 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-----------CccceeeEEecccccCC-----C
Confidence 3569999999999999999999999999998 55777776665443 22457888888875432 4
Q ss_pred CCccEEEEeccc
Q 029065 121 PPFDYIIGTDVV 132 (199)
Q Consensus 121 ~~fD~Ii~~~~~ 132 (199)
..||++|++-++
T Consensus 122 P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 PRFDGCVSNLPY 133 (315)
T ss_pred cccceeeccCCc
Confidence 689999987554
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=2.3e-05 Score=60.38 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
...+.|||+|+|.+++.+|....+|++++. +...+.|.+|+..++ ..+++++..|-...+ -.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------------~~n~evv~gDA~~y~-----fe 95 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG------------DVNWEVVVGDARDYD-----FE 95 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC------------CcceEEEeccccccc-----cc
Confidence 458999999999999999998777999998 457788888886666 457787776654332 14
Q ss_pred CccEEEEe--ccccCCcChHHHHHHHHHhcCCCcEE
Q 029065 122 PFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTI 155 (199)
Q Consensus 122 ~fD~Ii~~--~~~~~~~~~~~~l~~l~~~l~~~g~i 155 (199)
.-|+|+|- |+..-.+-..+++..+...|+.++.+
T Consensus 96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~ti 131 (252)
T COG4076 96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTI 131 (252)
T ss_pred ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcc
Confidence 56887763 33333455667777777788876653
No 223
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.90 E-value=6.5e-05 Score=55.18 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=45.8
Q ss_pred cEEEeCCCcChHHHHHHhhCC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 45 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+|||+|||.|..++.++..+. +|+++|. +.+.+.+++++..|+. .++.+.+..+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence 489999999999999998876 4999998 5599999999988863 3466666666543
No 224
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00021 Score=56.01 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=75.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 117 (199)
.+.+|+||||-+|-++..+++. +. +|+++|+.++ +....+.+.+.|+.+.+...
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------------------~~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------------------KPIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------------------ccCCCceEEeeeccCccHHHH
Confidence 4689999999999999999976 33 3999997553 01235788888987775332
Q ss_pred ----ccCCCccEEEEeccc----cCCc-------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065 118 ----AVAPPFDYIIGTDVV----YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 180 (199)
Q Consensus 118 ----~~~~~fD~Ii~~~~~----~~~~-------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v 180 (199)
....++|+|++...- .+.. ....++......|+|+|.+++-.-.... .+.++..+++.|..
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~~~~F~~ 178 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKALRRLFRK 178 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHHHHhhce
Confidence 112357999865322 1111 2344555566778999987665543322 46777777776643
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.87 E-value=0.00053 Score=48.92 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=64.8
Q ss_pred EEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC-
Q 029065 46 VIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA- 120 (199)
Q Consensus 46 VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~- 120 (199)
++|+|||+|... .++... ..++++|.+. ++..++........ ..+.+...+.... ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~ 117 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL------------GLVDFVVADALGG-VLPFEDS 117 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC------------CceEEEEeccccC-CCCCCCC
Confidence 999999999866 444433 4789999854 66664333222110 0145555555431 112222
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
..||++......++.. ...++..+.+.++|+|.+++......
T Consensus 118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4799994444433344 88999999999999999888877543
No 226
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00013 Score=60.25 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=73.7
Q ss_pred CcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++||-||.|.|.....+.+.. .+++.+|+. .+++.+++-+...... ...+++++...|-... .....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence 699999999999999999886 569999995 5999999877543210 1135677666554322 12223
Q ss_pred CCccEEEEecccc-CC---cChHHHHHHHHHhcCCCcEEEEE
Q 029065 121 PPFDYIIGTDVVY-AE---HLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 121 ~~fD~Ii~~~~~~-~~---~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
..||+||..-.=. .+ -.-..+.+.+++.|+++|++..-
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4899999863211 11 12488999999999999986665
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.83 E-value=0.0002 Score=58.53 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=65.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
++..|||+|+|+|.++..++..+.+|+++|.. ..++..++.... ..++++...|+...+......
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~--------------~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS--------------NPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT--------------CSSEEEEES-TTTSCGGGHCS
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh--------------cccceeeecchhccccHHhhc
Confidence 68899999999999999999999889999995 477777765542 347899998887554433223
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 151 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~ 151 (199)
.....|+++-++ ..-..++..+...-+.
T Consensus 96 ~~~~~vv~NlPy---~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 96 NQPLLVVGNLPY---NISSPILRKLLELYRF 123 (262)
T ss_dssp SSEEEEEEEETG---TGHHHHHHHHHHHGGG
T ss_pred CCceEEEEEecc---cchHHHHHHHhhcccc
Confidence 466778888664 2233555555554343
No 228
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.82 E-value=5.2e-05 Score=65.21 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred cEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-cccCC
Q 029065 45 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 121 (199)
.|||||+|||++|+.+++.|+. |++++. ..|.+.|+.-...|+. .++|.+.+ ...+.. .....
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vIn---krStev~vg~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVIN---KRSTEVKVGGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeec---cccceeeecCcc
Confidence 7999999999999999999987 999997 6799999998888864 45666654 222211 11123
Q ss_pred CccEEEEeccc---cCCcChHHHHHHHHHhcCCCcE
Q 029065 122 PFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTT 154 (199)
Q Consensus 122 ~fD~Ii~~~~~---~~~~~~~~~l~~l~~~l~~~g~ 154 (199)
+-|+++..+.. -....++.+-.+..+++.+++.
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 46666554321 1233566777777788887753
No 229
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.78 E-value=1.9e-05 Score=64.06 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=80.3
Q ss_pred ccCCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhh----cccc--CCCCCCC-------
Q 029065 35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTS----RISQ--MNPGSDL------- 99 (199)
Q Consensus 35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~----~~~~--~~~~~~~------- 99 (199)
.|.+..++|.++||||||+-+..+..|..-+ +++++|+.+ -.+..++=+...+. +.-. ++-.+..
T Consensus 49 ~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e 128 (256)
T PF01234_consen 49 TFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKE 128 (256)
T ss_dssp HHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHH
T ss_pred HhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHH
Confidence 3677888999999999999766555554444 599999843 33333322211110 0000 0000000
Q ss_pred ---CCcE-EEEEeeeCCCccccc---cCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEecCh----
Q 029065 100 ---LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRST---- 164 (199)
Q Consensus 100 ---~~~i-~~~~~d~~~~~~~~~---~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~---- 164 (199)
-..| .+..+|......... ..++||+|++.-++-. .+.....++.+.++|||||.++++.-....
T Consensus 129 ~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v 208 (256)
T PF01234_consen 129 EKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV 208 (256)
T ss_dssp HHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE
T ss_pred HHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE
Confidence 0123 366777766554433 1235999999877643 335677788888889999998877543211
Q ss_pred --------hHHHHH-HHHH-HhCCeEEEec
Q 029065 165 --------SVHEQM-LQMW-KSNFNVKLVP 184 (199)
Q Consensus 165 --------~~~~~~-~~~~-~~~~~v~~~~ 184 (199)
..-+.+ .+.+ ..||.+....
T Consensus 209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 112333 3334 4588887776
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00086 Score=57.21 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhh----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.|.+|||+-+++|-=+.++|.. |..|+++|.+. -++.++.|+.+.+. .++.....|-......
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLAEL 223 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccccc
Confidence 6789999999999766666543 45589999955 88999999999874 3455555554333222
Q ss_pred cccCCCccEEEEeccccCC----------------------cChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 117 KAVAPPFDYIIGTDVVYAE----------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~----------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
.....+||.|+...+.-.. ....+++....++|+|||.++-++.....+
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2223369999987665221 125677888888999999998888765443
No 231
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.76 E-value=0.00034 Score=57.53 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+..++|||+|||+|.....+... + .+++++|.+. +++.++.-+.... .... ..|.....
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--------------~~~~--~~~~~~~~ 94 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--------------NNRN--AEWRRVLY 94 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--------------cccc--chhhhhhh
Confidence 477789999999999744333322 2 3499999865 8887777443221 0000 01111000
Q ss_pred c-cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHHHHHHH-hCCeEE
Q 029065 116 I-KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWK-SNFNVK 181 (199)
Q Consensus 116 ~-~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~~~~~~-~~~~v~ 181 (199)
. .......|+|+++.++.... ....+++.+...+++ .++|..+.-... ......+.+. .++.+.
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 0 01112349999999887633 455556666555655 667777654333 2444444443 355554
No 232
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.75 E-value=0.00088 Score=52.79 Aligned_cols=116 Identities=16% Similarity=0.077 Sum_probs=71.3
Q ss_pred EEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 46 VIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 46 VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
|.|+||--|.+++.|...|. +++++|+++ -++.|+.++...++ .+++++...|-... + ...+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL~~--l-~~~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGLEV--L-KPGED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGGGG-----GGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCcccc--c-CCCCC
Confidence 68999999999999999886 499999955 99999999998875 45788877664321 1 11224
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 180 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v 180 (199)
.|.|+.+++- ...+.+++......++....+++ .|.........|+.. .+|.+
T Consensus 67 ~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~--~gf~I 119 (205)
T PF04816_consen 67 VDTIVIAGMG--GELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYE--NGFEI 119 (205)
T ss_dssp --EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHH--TTEEE
T ss_pred CCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHH--CCCEE
Confidence 7898887652 23466666666666655444444 555555444444443 44544
No 233
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.75 E-value=0.0004 Score=56.82 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhh------hcc-----ccCC-------------C-
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNT------SRI-----SQMN-------------P- 95 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~------~~~-----~~~~-------------~- 95 (199)
-.+.+||==|||.|.++..+|.+|..|.+.|.+-..-.+.. .-+|. ..+ ..++ |
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~-fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN-FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH-HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999999999999772222222 22221 111 0000 1
Q ss_pred ---C--CCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcE
Q 029065 96 ---G--SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 154 (199)
Q Consensus 96 ---~--~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~ 154 (199)
. .....++....+|+...-......+.||+|+.+=.+=-..++-+.++++.++|||||.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGY 197 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCE
Confidence 1 1224456666666654432222247899999872222256789999999999999995
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.74 E-value=0.00065 Score=55.78 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCcEEEeCCCc-ChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHH-HhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 43 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 43 ~~~VLdlGcG~-G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++|+=||||+ -+.++.+++. ++.|+++|+ +++.+.+++-+. ..++ ..++.+...|..+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~~-- 187 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDVT-- 187 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhccc--
Confidence 46999999997 6778888854 466999999 559999988666 3343 457888887765332
Q ss_pred cccCCCccEEEEecccc-CCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 117 KAVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~-~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.....||+|+.+.... ..+...+++..+.+.++||+.+.+-...
T Consensus 188 -~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 188 -YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred -cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 2246899998887775 3668999999999999999988887554
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.65 E-value=0.00044 Score=58.08 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCcChHHHH-HH---hh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEE--EEeeeCC
Q 029065 42 KGKRVIELGAGCGVAGFG-MA---LL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN 112 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~-la---~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~ 112 (199)
++..++|+|||.|.=... |. .. ...++.+|++. +|+.+..++.... .+.+.+ ...|+.+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence 456899999999963322 22 12 35699999975 9998888876222 234444 5666644
Q ss_pred Ccc-ccc--cCCCccEEEEec-cccC--CcChHHHHHHHHH-hcCCCcEEEEEEE
Q 029065 113 EDH-IKA--VAPPFDYIIGTD-VVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE 160 (199)
Q Consensus 113 ~~~-~~~--~~~~fD~Ii~~~-~~~~--~~~~~~~l~~l~~-~l~~~g~i~i~~~ 160 (199)
... ++. ......+++.-+ ++.+ ......+++.+.+ .|+|++.++|..-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 321 111 123456665544 5543 5567788999999 9999999888753
No 236
>PHA01634 hypothetical protein
Probab=97.62 E-value=0.00012 Score=52.96 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=45.9
Q ss_pred ccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhh
Q 029065 35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNT 87 (199)
Q Consensus 35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~ 87 (199)
.++...+++++|+|+|++.|.-++.++..||+ |++.+..+ ..+..++|+..+.
T Consensus 21 ~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 21 AYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred HhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 34667789999999999999999999999998 99999854 7788888887774
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.55 E-value=0.001 Score=56.12 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
..+|+++|||||++|-++..+.+.|++|+++|...+-+ .+..+ .++.....|-... .+ .
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~----~L~~~--------------~~V~h~~~d~fr~--~p-~ 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ----SLMDT--------------GQVEHLRADGFKF--RP-P 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH----hhhCC--------------CCEEEEeccCccc--CC-C
Confidence 45789999999999999999999999999999644321 12121 2455444332221 11 1
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCC--cEEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGYE 160 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~--g~i~i~~~ 160 (199)
.+++|.+++.-. ..+..+.+.+.+++..| ..+++..+
T Consensus 268 ~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 268 RKNVDWLVCDMV----EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred CCCCCEEEEecc----cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 568999998644 45567777777777655 23444443
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00089 Score=53.47 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=65.1
Q ss_pred CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
-...++|+.|||+|+-||-.+..+...||+ |+++|... -+..- +..+ ...+.....+....+
T Consensus 74 F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d-------------~rV~~~E~tN~r~l~ 137 (245)
T COG1189 74 FELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRND-------------PRVIVLERTNVRYLT 137 (245)
T ss_pred cCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcC-------------CcEEEEecCChhhCC
Confidence 346688999999999999999999999987 99999732 21111 1111 112233333333222
Q ss_pred cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
... ..+..|+|++.-++ -....++..+..++++++.++.-
T Consensus 138 ~~~-~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 138 PED-FTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred HHH-cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEE
Confidence 211 13478888887554 35677888888889888765443
No 239
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.43 E-value=0.00031 Score=58.29 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=36.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC---CeEEEeec-hhHHHHHHHHHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVE 84 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~-~~~l~~a~~~~~ 84 (199)
++..++|.+||.|-.+..++... .+|+++|. +++++.+++.+.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 45699999999999999999774 57999999 559999987763
No 240
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0018 Score=51.05 Aligned_cols=105 Identities=17% Similarity=0.100 Sum_probs=76.1
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
-+|.+||++|-|-|++.-++..... +-+.++- +.+++.++.+.-.. -.++.+...-|.+.... .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence 4688999999999998887776644 4777787 66888887764333 23677888888765322 3
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
+++.||-|.-...--+.+++..+.+.+.++|+|+|++-+..
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 35679988764321345678888899999999999874443
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.34 E-value=0.00012 Score=57.76 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=70.6
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~ 120 (199)
...|+|..||.|-.++..|..|+.|+++|++. -+..|+.|++.-|. .++|.+.++||.+.- .++...
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~K 163 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKADK 163 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhhh
Confidence 45899999999988999999999999999954 78888999988875 459999999996442 222333
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 151 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~ 151 (199)
.-+|.++.+++.-.++....-+.-+..++.|
T Consensus 164 ~~~~~vf~sppwggp~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 164 IKYDCVFLSPPWGGPSYLRADVYDLETHLKP 194 (263)
T ss_pred heeeeeecCCCCCCcchhhhhhhhhhhhcch
Confidence 4577888888775555433333333333333
No 242
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.34 E-value=5.2e-05 Score=59.31 Aligned_cols=93 Identities=20% Similarity=0.244 Sum_probs=68.3
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
++++||||+|-|-++..++....+|.+++.+. |....+.. +- . ..-..+|.+. +-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y------------n--Vl~~~ew~~t------~~ 168 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY------------N--VLTEIEWLQT------DV 168 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC------------c--eeeehhhhhc------Cc
Confidence 57999999999999999998877899999866 65554332 11 1 1122455322 34
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCC-CcEEEEEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY 159 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~-~g~i~i~~ 159 (199)
+||+|.+-..+-..-++-.+++-++.+|.| +|.++++-
T Consensus 169 k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred eeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 799999888776667788999999999998 78776653
No 243
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.27 E-value=0.0013 Score=56.54 Aligned_cols=102 Identities=24% Similarity=0.218 Sum_probs=71.1
Q ss_pred CCcEEEeCCCcChHHHHHHhh--C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL--G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+.+|||-=||+|+=|+-.++. + .+|++.|++ ++++.+++|+..|++. .+.+++.+.|-... +..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~l--l~~ 117 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVL--LYS 117 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHH--HCH
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHH--hhh
Confidence 458999999999999999987 3 359999995 4999999999999863 12566666554211 112
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....||+|=..+ + ..+..+++...+.++.||.++++..
T Consensus 118 ~~~~fD~IDlDP-f---GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 118 RQERFDVIDLDP-F---GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp STT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccCCEEEeCC-C---CCccHhHHHHHHHhhcCCEEEEecc
Confidence 367899997754 3 4567899999999999999999864
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.23 E-value=0.013 Score=46.48 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+|.+||-||+.+|..--+++.. | ..|.+++.+. ..+..-.-++. -.+|-..-.|-..+..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------------R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------------RPNIIPILEDARHPEK 136 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------------STTEEEEES-TTSGGG
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------------CCceeeeeccCCChHH
Confidence 345889999999999877777754 4 3599999844 43433332222 1256666666665544
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-------hHHHHHHHHHHh-CCeEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKS-NFNVK 181 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------~~~~~~~~~~~~-~~~v~ 181 (199)
....-+..|+|++.=. .+.-.+-++......|++||.++++.+.+.- .++..-.+.+.. +|++.
T Consensus 137 Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp GTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred hhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence 4333457888887521 3445666778888899999999999876432 224444455544 68773
No 245
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.18 E-value=0.0058 Score=45.14 Aligned_cols=105 Identities=17% Similarity=0.074 Sum_probs=63.1
Q ss_pred eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC-CCccEEEEeccccCCc-------
Q 029065 66 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH------- 136 (199)
Q Consensus 66 ~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~~------- 136 (199)
+|++.|+ .++++.+++.+...+. ..++++...+-.+.... .. +++|+++.|=-+....
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcC
Confidence 5899999 6699999999988864 34677777554433322 23 4899999874332222
Q ss_pred --ChHHHHHHHHHhcCCCcEEEEEEEecChh------HHHHHHHHHH-hCCeEEEe
Q 029065 137 --LLEPLLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV 183 (199)
Q Consensus 137 --~~~~~l~~l~~~l~~~g~i~i~~~~~~~~------~~~~~~~~~~-~~~~v~~~ 183 (199)
.--..++.+.++|++||.+.++....++. ....|++.+. +.|.|...
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 24456677778899999987766654432 1334555554 36877544
No 246
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0083 Score=48.96 Aligned_cols=105 Identities=11% Similarity=-0.010 Sum_probs=69.9
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.-.|.+|||-|+|+|.+|.++++.- .++...|+-+ -.+.|++-....+. .+++++.+-|+-....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSGF 171 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCCc
Confidence 3468999999999999999999874 4588889843 55566666666653 6788888877743221
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
. .-...+|.|+..- ..+-..+..+...|+.+|.-+.+...
T Consensus 172 ~-~ks~~aDaVFLDl-----PaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 L-IKSLKADAVFLDL-----PAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred c-ccccccceEEEcC-----CChhhhhhhhHHHhhhcCceEEeccH
Confidence 1 1134677766642 34445555666678877765555543
No 247
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0012 Score=55.56 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=68.5
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHh-hC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMAL-LG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~-~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
..|+.++|||+|.|+|. +++++. .- ..++.++.+.+++..-..+..|-. ....||...+
T Consensus 110 ~dfapqsiLDvG~GPgt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------------t~~td~r~s~ 172 (484)
T COG5459 110 PDFAPQSILDVGAGPGT-GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------------TEKTDWRASD 172 (484)
T ss_pred CCcCcchhhccCCCCch-hhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------------cccCCCCCCc
Confidence 56788899999999986 444442 21 237777766666655555555421 1113333222
Q ss_pred cc-----cccCCCccEEEEeccccCCcC---hHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 115 HI-----KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 115 ~~-----~~~~~~fD~Ii~~~~~~~~~~---~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
.. -.....|+++++.+-+.+... ++..++.+..++.|||.++|+.+.-.-.
T Consensus 173 vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 173 VTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred cchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 11 112346899888777766443 5567888888899999999988765444
No 248
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.11 E-value=0.0045 Score=48.86 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=71.6
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCc
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 123 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 123 (199)
.++||+||=+.-..+.-.. --.|+.+|+... .-.+.+.|+..........+.|
T Consensus 53 lrlLEVGals~~N~~s~~~-~fdvt~IDLns~--------------------------~~~I~qqDFm~rplp~~~~e~F 105 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ--------------------------HPGILQQDFMERPLPKNESEKF 105 (219)
T ss_pred ceEEeecccCCCCcccccC-ceeeEEeecCCC--------------------------CCCceeeccccCCCCCCcccce
Confidence 6999999965433333221 234999996331 2244556776554433446789
Q ss_pred cEEEEeccccCCcC---hHHHHHHHHHhcCCCcE-----EEEEEEecCh-----hHHHHHHHHHHh-CCeEEE
Q 029065 124 DYIIGTDVVYAEHL---LEPLLQTIFALSGPKTT-----ILLGYEIRST-----SVHEQMLQMWKS-NFNVKL 182 (199)
Q Consensus 124 D~Ii~~~~~~~~~~---~~~~l~~l~~~l~~~g~-----i~i~~~~~~~-----~~~~~~~~~~~~-~~~v~~ 182 (199)
|+|.++=++.+.+. .-.++..+.++|+|+|. ++|+.|...- -..+.|...+.. ||....
T Consensus 106 dvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 106 DVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred eEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 99999988877554 55788888999999999 8888875321 123455555543 665543
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.05 E-value=0.0049 Score=50.97 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=84.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.|..|||+.+++|-=+.+++.. + ..|++.|++ .-+...+.++.+.+. .++.....|...... .
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------------~~v~~~~~D~~~~~~-~ 151 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------------FNVIVINADARKLDP-K 151 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------------SSEEEEESHHHHHHH-H
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------------ceEEEEeeccccccc-c
Confidence 6788999999999877777754 3 469999994 488888999888773 356666544432211 1
Q ss_pred ccCCCccEEEEeccccCC------c----------------ChHHHHHHHHHhc----CCCcEEEEEEEe----cChhHH
Q 029065 118 AVAPPFDYIIGTDVVYAE------H----------------LLEPLLQTIFALS----GPKTTILLGYEI----RSTSVH 167 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~------~----------------~~~~~l~~l~~~l----~~~g~i~i~~~~----~~~~~~ 167 (199)
.....||.|+...+.-.. . .-..++....+++ +|||.++-++.. .+..+.
T Consensus 152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV 231 (283)
T PF01189_consen 152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVV 231 (283)
T ss_dssp HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHH
T ss_pred ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHH
Confidence 223469999987655221 1 2556778888889 999998777754 233445
Q ss_pred HHHHHHHHhCCeEEEec
Q 029065 168 EQMLQMWKSNFNVKLVP 184 (199)
Q Consensus 168 ~~~~~~~~~~~~v~~~~ 184 (199)
+.|++.. ..|+...+.
T Consensus 232 ~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 232 EKFLKRH-PDFELVPIP 247 (283)
T ss_dssp HHHHHHS-TSEEEECCE
T ss_pred HHHHHhC-CCcEEEecc
Confidence 5666643 235544333
No 250
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.04 E-value=0.0018 Score=47.82 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCCcEEEeCCCcChHHHHHHh------hCCeEEEeech-hHHHHHHHHHHHhh
Q 029065 41 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQI-EVLPLLKRNVEWNT 87 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~------~g~~v~~~D~~-~~l~~a~~~~~~~~ 87 (199)
-+..+|+|+|||.|.+|..++. .+.+|+++|.+ ...+.+.......+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3567999999999999999998 36679999984 47777776665543
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.96 E-value=0.00021 Score=49.90 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=38.4
Q ss_pred EEeCCCcChHHHHHHhh---C--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 47 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 47 LdlGcG~G~~sl~la~~---g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
||+|+..|..++.++.. . .+++++|.....+.+++.+...+. ..++++...+..+... ....+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~l~-~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQGDSPDFLP-SLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------GGG------------BTEEEEES-THHHHH-HHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEcCcHHHHH-HcCCC
Confidence 79999999877776643 2 369999983323334444433332 3367777766532211 11147
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
+||+|+.... +..+....-+..+...|+|||.+++-
T Consensus 69 ~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 69 PIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8999988652 23345566677778889999988764
No 252
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.93 E-value=0.0052 Score=51.69 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=70.4
Q ss_pred CCC-CcEEEeCCCcChHHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKG-KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~-~~VLdlGcG~G~~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
|++ ...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+... . .+ |+....|....
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~-~-~g---------------V~~v~gdmfq~---- 233 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL-A-PG---------------VEHVAGDMFQD---- 233 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh-c-CC---------------cceeccccccc----
Confidence 444 68999999999888777777666777765 4455544333 2 22 33344443322
Q ss_pred ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
-+.-|+|+.-.++++ +++..++++.|.+.|+|+|.+++.+..
T Consensus 234 --~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 234 --TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred --CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 235569999999988 667999999999999999999998874
No 253
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.88 E-value=0.0043 Score=53.04 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
...+..++|+|||.|-+....+.. ++.++++|++. -+..+........+ ..+..+...++.. .+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----------~~k~~~~~~~~~~---~~ 173 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----------DNKCNFVVADFGK---MP 173 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----------hhhcceehhhhhc---CC
Confidence 344568999999999888888876 46799999854 22222222111111 1122223334332 23
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i 157 (199)
..+..||.+-+.+...+......++..+.+.++|||.+..
T Consensus 174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 4567899999999999999999999999999999998665
No 254
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.88 E-value=0.026 Score=44.68 Aligned_cols=115 Identities=15% Similarity=0.058 Sum_probs=77.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.++.|+||=.|.++..+.+.+. .+++.|+.+ .++.|.+++..+++ ..++++..+|-... -.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dgl~~---l~ 81 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDGLAV---LE 81 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCCccc---cC
Confidence 356699999999999999998754 499999955 99999999988865 45777777665322 12
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 173 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~ 173 (199)
.+..+|+|+.+++ ....+..+++.-...|+.--. ++-.|+.+......|+..
T Consensus 82 ~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~r-lILQPn~~~~~LR~~L~~ 133 (226)
T COG2384 82 LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVER-LILQPNIHTYELREWLSA 133 (226)
T ss_pred ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcce-EEECCCCCHHHHHHHHHh
Confidence 2447999988764 233456666666666653222 344444455445555544
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.018 Score=44.62 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=66.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCccc-
Q 029065 42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHI- 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~- 116 (199)
++.+|||+||-+|.++..+-.+ +. .|.++|+-... ...| ..+... |+.+....
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------p~~G---------------a~~i~~~dvtdp~~~~ 126 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------PPEG---------------ATIIQGNDVTDPETYR 126 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------CCCC---------------cccccccccCCHHHHH
Confidence 3679999999999999888865 34 49999963310 0111 122222 44444311
Q ss_pred ----cccCCCccEEEEeccccC-----CcChHHHHHHHHHh-------cCCCcEEEEEEEecChhHHHHHHHHHHhCC-e
Q 029065 117 ----KAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFAL-------SGPKTTILLGYEIRSTSVHEQMLQMWKSNF-N 179 (199)
Q Consensus 117 ----~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~-------l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-~ 179 (199)
..++.+.|+|++. +... ..++..+++.|..+ +.|+|.++.-.-.... ...|...+.+.| .
T Consensus 127 ki~e~lp~r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 127 KIFEALPNRPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--EALLQRRLQAVFTN 203 (232)
T ss_pred HHHHhCCCCcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--hHHHHHHHHHHhhh
Confidence 1234678998874 3322 34566666666443 5689986654433222 344444454444 3
Q ss_pred EEEecC
Q 029065 180 VKLVPK 185 (199)
Q Consensus 180 v~~~~~ 185 (199)
|..+.+
T Consensus 204 Vk~vKP 209 (232)
T KOG4589|consen 204 VKKVKP 209 (232)
T ss_pred cEeeCC
Confidence 344443
No 256
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.81 E-value=0.015 Score=47.59 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=84.8
Q ss_pred cCCCCCCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 36 FCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
.+.+++.|+.|+=+| ---+.|+++|..| .+|..+|+.+ .+....+.++..+ ..+++....|..+
T Consensus 146 ~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g------------~~~ie~~~~Dlr~ 212 (354)
T COG1568 146 YSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG------------YNNIEAFVFDLRN 212 (354)
T ss_pred ccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC------------ccchhheeehhcc
Confidence 478899999999999 5567777777654 4599999976 8888888877766 3467777788775
Q ss_pred CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCC---cEEEEEEEecChhHHHHHHHHHH
Q 029065 113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK---TTILLGYEIRSTSVHEQMLQMWK 175 (199)
Q Consensus 113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~---g~i~i~~~~~~~~~~~~~~~~~~ 175 (199)
... ......||+.+..++ +-...+..++..=-..|+.. |.+.++.....-+.+..+.+.+.
T Consensus 213 plp-e~~~~kFDvfiTDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lI 276 (354)
T COG1568 213 PLP-EDLKRKFDVFITDPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILI 276 (354)
T ss_pred cCh-HHHHhhCCeeecCch-hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHH
Confidence 532 233578999888544 55555666666666666654 55666655544444555545343
No 257
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.61 E-value=0.0074 Score=49.65 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=47.0
Q ss_pred cEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+|+||.||.|..++.+...|.+ |.++|.++ +++..+.|.... ....|+.+...... .+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------------~~~~Di~~~~~~~~-~~~ 62 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------------LIEGDITKIDEKDF-IPD 62 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------------CccCccccCchhhc-CCC
Confidence 6999999999999999998988 78899854 777666654211 22233333321110 357
Q ss_pred ccEEEEeccc
Q 029065 123 FDYIIGTDVV 132 (199)
Q Consensus 123 fD~Ii~~~~~ 132 (199)
+|+|+++++.
T Consensus 63 ~D~l~~gpPC 72 (275)
T cd00315 63 IDLLTGGFPC 72 (275)
T ss_pred CCEEEeCCCC
Confidence 9999998776
No 258
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.56 E-value=0.018 Score=46.17 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=43.3
Q ss_pred cEEEeCCCcChHHHHHHhhCCeEEEeechh----HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 45 RVIELGAGCGVAGFGMALLGCNVITTDQIE----VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
+|||.-+|-|..++.+|..|++|++++.+. ++...-++....... ......+|++.+.|..+... ...
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------~~~~~~ri~l~~~d~~~~L~--~~~ 149 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------LAEAMRRIQLIHGDALEYLR--QPD 149 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------HHHHHHHEEEEES-CCCHCC--CHS
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------HHHHHhCCEEEcCCHHHHHh--hcC
Confidence 899999999999999999999999999754 222222222221100 00112478888877654322 346
Q ss_pred CCccEEEEeccc
Q 029065 121 PPFDYIIGTDVV 132 (199)
Q Consensus 121 ~~fD~Ii~~~~~ 132 (199)
.+||+|...+++
T Consensus 150 ~s~DVVY~DPMF 161 (234)
T PF04445_consen 150 NSFDVVYFDPMF 161 (234)
T ss_dssp S--SEEEE--S-
T ss_pred CCCCEEEECCCC
Confidence 799999996554
No 259
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.54 E-value=0.01 Score=48.43 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=61.4
Q ss_pred CcEEEeCCCc---ChHHHHHHh---hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 44 KRVIELGAGC---GVAGFGMAL---LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 44 ~~VLdlGcG~---G~~sl~la~---~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
...||||||. |. .-..|+ -.++|+.+|... ++..++.-+..+. .....+...|..+....
T Consensus 70 rQFLDlGsGlPT~~n-vHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGN-VHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAI 136 (267)
T ss_dssp -EEEEET--S--SS--HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHH
T ss_pred ceEEEcccCCCCCCC-HhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHH
Confidence 3799999994 33 333333 267899999955 8888877665542 11367888888766422
Q ss_pred cc---cC-----CCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 117 KA---VA-----PPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 117 ~~---~~-----~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
-. .. .+.=.++...++++ ..+...++..+.+.|.||..+.|+....
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 10 11 12224556667766 3578999999999999999888887654
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.36 E-value=0.085 Score=45.63 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCcChHHHHHH-hhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGVAGFGMA-LLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la-~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+|.+|||+.|-+|-=+.++| .+.. .|++.|.+. -+...+.|+.+.|. .+..+.+.|-..+....
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPEKE 308 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccccc
Confidence 68899999999975444444 3333 499999855 78888889988873 23444444543322111
Q ss_pred ccCCCccEEEEeccccC------C----------------cChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 118 AVAPPFDYIIGTDVVYA------E----------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~------~----------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
..++||-|+...+.-. . ....+++....+++++||.++-++..-..+
T Consensus 309 -~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 309 -FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE 377 (460)
T ss_pred -cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh
Confidence 2348999986655422 1 124566677778889999988887754443
No 261
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.35 E-value=0.0039 Score=52.43 Aligned_cols=107 Identities=20% Similarity=0.087 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHH-------HHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~-------~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
.|+.|.|=..|||.+-+.+|..|+-|+|+|++- +++ .++.|...-+. ...-+.+...|..+.
T Consensus 208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~----------~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS----------SSQFLDVLTADFSNP 277 (421)
T ss_pred CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCC----------cchhhheeeecccCc
Confidence 588999999999998999999999999999865 444 23444444332 133466667776544
Q ss_pred ccccccCCCccEEEEeccccCC---------------------------------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 114 DHIKAVAPPFDYIIGTDVVYAE---------------------------------HLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~~~~---------------------------------~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
..-. +-.||.||+.+++--. +.+.+++.-..+.|..||.+.+=.+
T Consensus 278 ~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 278 PLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred chhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 3221 4579999998876110 1244555556667788998766554
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.34 E-value=0.0071 Score=48.28 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=54.2
Q ss_pred CCCCC-CCCcEEEeCCCcCh-HHHHHHh-hCCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeee-
Q 029065 37 CPSKL-KGKRVIELGAGCGV-AGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDW- 110 (199)
Q Consensus 37 ~~~~~-~~~~VLdlGcG~G~-~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~- 110 (199)
++... ++.++||||.|.-. ..+.-.+ .|-+.+|+|++. .+..|+.++..| ++ ...|+.....=
T Consensus 72 ~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~qk~~ 140 (292)
T COG3129 72 SGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRRQKDS 140 (292)
T ss_pred CCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEeccCc
Confidence 34433 56799999999743 3333332 377899999955 999999999887 32 22344332110
Q ss_pred CCC-ccccccCCCccEEEEeccccCC
Q 029065 111 GNE-DHIKAVAPPFDYIIGTDVVYAE 135 (199)
Q Consensus 111 ~~~-~~~~~~~~~fD~Ii~~~~~~~~ 135 (199)
... +....-+++||.+++++++|..
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccccccceeeeEecCCCcchh
Confidence 000 0111225689999999998764
No 263
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.022 Score=48.37 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=69.2
Q ss_pred CCcEEEeCCCcChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
.++|||--||+|+=|+-+|.. +. +|++.|++ ++.+.+++|+..|.. ......+.|-. ......
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN--~lm~~~ 118 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDAN--ALLHEL 118 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHH--HHHHhc
Confidence 679999999999999999976 44 69999995 599999999999831 12233222211 011111
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
...||+|=.. |+ ..+.++++...+..+.+|.+-++..
T Consensus 119 ~~~fd~IDiD-PF---GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 119 HRAFDVIDID-PF---GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCccEEecC-CC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence 3679988654 33 3455788888888888888877654
No 264
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.031 Score=46.61 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHH---H--hhhcc-----ccCC-----------------C
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVE---W--NTSRI-----SQMN-----------------P 95 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~---~--~~~~~-----~~~~-----------------~ 95 (199)
..+||==|||.|.++.-+|..|..+-|.+.+...-.+..-+. . |...+ ..++ |
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 458999999999999999999999999987762223322221 1 11111 0000 1
Q ss_pred --CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065 96 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 156 (199)
Q Consensus 96 --~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~ 156 (199)
.+..........+|+.+.-......+.||+|+.+-.+=-.+++-+.++++...|+|||..+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 1112223344445554332222223579999988433346789999999999999998743
No 265
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.05 E-value=0.085 Score=47.18 Aligned_cols=106 Identities=24% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee-------
Q 029065 40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD------- 109 (199)
Q Consensus 40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d------- 109 (199)
...+.+|+=+|||. |+.++..|+ .|++|+++|. ++.++.++. .+..+- .+.....+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~~v----------~i~~~e~~~~~~gya 227 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAEFL----------ELDFEEEGGSGDGYA 227 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCeEE----------Eeccccccccccchh
Confidence 45688999999997 998888885 4999999998 446666654 221100 00100000
Q ss_pred --eCCCc------cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 110 --WGNED------HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 110 --~~~~~------~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..... ......+.+|+||..-..-....+.-+.+...+.++|||.+....
T Consensus 228 ~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 228 KVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00000 000001469999986543222234344588899999999865544
No 266
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.96 E-value=0.094 Score=44.44 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=57.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhh------------C------CeEEEeech--h---HHHHHHHHHHHhhhccccCCCCCC
Q 029065 42 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI--E---VLPLLKRNVEWNTSRISQMNPGSD 98 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~------------g------~~v~~~D~~--~---~l~~a~~~~~~~~~~~~~~~~~~~ 98 (199)
+..+|+|+||-+|..++.+... + -+|+..|++ + +....-........
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---------- 85 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---------- 85 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH----------
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC----------
Confidence 3469999999999888777631 1 258888973 2 22222222111110
Q ss_pred CCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCc---------------------------------------ChH
Q 029065 99 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------------LLE 139 (199)
Q Consensus 99 ~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------------------------~~~ 139 (199)
...+. ..+--+.+-..-.+.+..|+++++-.++|.+ ++.
T Consensus 86 -~~~~f-~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~ 163 (334)
T PF03492_consen 86 -FRNYF-VSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFS 163 (334)
T ss_dssp -TTSEE-EEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHH
T ss_pred -CceEE-EEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHH
Confidence 11222 2222233333335567889988888776622 244
Q ss_pred HHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 140 PLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 140 ~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
.+++...+=|+|||.+++....|..
T Consensus 164 ~FL~~Ra~ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 164 SFLKARAEELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred HHHHHhhheeccCcEEEEEEeeccc
Confidence 4555555557899999999988765
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.87 E-value=0.039 Score=46.65 Aligned_cols=95 Identities=26% Similarity=0.241 Sum_probs=60.0
Q ss_pred CCCCCcEEEeCCC-cChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 40 KLKGKRVIELGAG-CGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG-~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.-+|++|+=.|+| .|.+++.+|+ .|++|+++|.++ -++.|++- +. . .+ .++.+.+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA-------------d-~~--i~~~~~~~~ 223 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA-------------D-HV--INSSDSDAL 223 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC-------------c-EE--EEcCCchhh
Confidence 3458899999997 3568888887 699999999855 66666543 21 0 11 222212222
Q ss_pred cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
....+.||+|+..- . ...+....+.|+++|.+.+....
T Consensus 224 ~~~~~~~d~ii~tv------~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 224 EAVKEIADAIIDTV------G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred HHhHhhCcEEEECC------C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 22233499988752 2 56667777888888887666544
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.75 E-value=0.023 Score=50.15 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=69.1
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
.+|+|+.+|.|-.+.+|.... |...-. +..-......+-..|+ --...||-+. +......
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIydRGL---------------IG~yhDWCE~--fsTYPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYDRGL---------------IGVYHDWCEA--FSTYPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhhccc---------------chhccchhhc--cCCCCcc
Confidence 389999999996665555433 333321 1111111112222222 2233466322 2334578
Q ss_pred ccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecCC
Q 029065 123 FDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 186 (199)
Q Consensus 123 fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~ 186 (199)
||+|.++.++-. .-.+..++-.+.|.|+|+|.++|-+.. ++.......+. -.|++..+..+
T Consensus 428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEecC
Confidence 999999987744 335788999999999999999996653 33333333332 24666554443
No 269
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.67 E-value=0.022 Score=47.22 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=44.6
Q ss_pred cEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+++||.||.|-+++.+...|.+ |.++|+++ +.+.-+.|.. .....|+...+...... .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence 6899999999999999999987 88889854 6666655542 34445555443222222 5
Q ss_pred ccEEEEeccc
Q 029065 123 FDYIIGTDVV 132 (199)
Q Consensus 123 fD~Ii~~~~~ 132 (199)
+|++++.+|.
T Consensus 62 ~D~l~ggpPC 71 (335)
T PF00145_consen 62 VDLLIGGPPC 71 (335)
T ss_dssp -SEEEEE---
T ss_pred ceEEEeccCC
Confidence 9999998775
No 270
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.64 E-value=0.17 Score=43.30 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=70.2
Q ss_pred CC-CcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhh-ccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KG-KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS-RISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~-~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++ .+||=||.|-|+....+.+.- .+++.+|+ ++|++.++.+...... ..+.++| ++++..-|-. ...
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dp------Rv~Vv~dDAf--~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDP------RVTVVNDDAF--QWL 359 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCC------eeEEEeccHH--HHH
Confidence 44 589999999999888887753 46999999 6699999865543321 1122233 5666554432 112
Q ss_pred cccCCCccEEEEeccccCC-----cChHHHHHHHHHhcCCCcEEEEEE
Q 029065 117 KAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
......||.||..=+=-.. -.-.++...+++.|+++|.+++-.
T Consensus 360 r~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 360 RTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred HhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 2334589999875211111 123466777889999999877754
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.7 Score=36.41 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=65.7
Q ss_pred CCCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
-+|.+||=||+-+|...-+.+.. | ..+.+++.+ ...+-....+... .++-....|-..++...
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--------------~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--------------PNIIPILEDARKPEKYR 140 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--------------CCceeeecccCCcHHhh
Confidence 36889999999999877777754 5 359999984 3443333322221 14444444544333222
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
..-+..|+|...= -.+.-.+-+.......|+++|.++++.+.|.-
T Consensus 141 ~~Ve~VDviy~DV--AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSI 185 (231)
T COG1889 141 HLVEKVDVIYQDV--AQPNQAEILADNAEFFLKKGGYVVIAIKARSI 185 (231)
T ss_pred hhcccccEEEEec--CCchHHHHHHHHHHHhcccCCeEEEEEEeecc
Confidence 2224566665431 11334555677778899999999999887763
No 272
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.01 Score=52.10 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhh--CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~--g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
...++.+|||-=|++|+-++-.|+. |. +|++.|.++ +++..++|+..|+. .+.++..+.|....-
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLM 174 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHH
Confidence 3445679999999999999999976 43 499999855 99999999999854 223444443332110
Q ss_pred -cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 115 -HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 115 -~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
........||+|=..+ + .....+++...+.++.||.++++-.
T Consensus 175 ~~~~~~~~~FDvIDLDP-y---Gs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 175 YEHPMVAKFFDVIDLDP-Y---GSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred HhccccccccceEecCC-C---CCccHHHHHHHHHhhcCCEEEEEec
Confidence 1112246899997754 2 2344677777788889999888753
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.61 E-value=0.14 Score=44.11 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 138 LEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 138 ~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
+..+++...+=|.|||.+++....|.
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHHHHHHHHhccCcEEEEEEecCC
Confidence 34455555566789999999987764
No 274
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.55 E-value=0.027 Score=44.07 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKR 81 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~ 81 (199)
+|..|||-.||+|..++++..+|-+.+++|+++ .++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 478999999999999999999999999999954 8887753
No 275
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.49 E-value=0.098 Score=46.02 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=69.0
Q ss_pred CcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHH-HHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKR-NVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
-++|-+|||---++..+-.-|.+ ++.+|++. ++..+.. ++ .. ...+.+...|. ......+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~-------------~~~~~~~~~d~---~~l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KE-------------RPEMQMVEMDM---DQLVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cC-------------CcceEEEEecc---hhccCCC
Confidence 48999999999888888888887 99999976 5554433 32 11 23566666555 3344557
Q ss_pred CCccEEEEeccccC----------CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 121 PPFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~----------~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
+.||+|+.-+.+-. .......+..+.++++++|..+...
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 89999997766632 2235566788889999999854443
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.41 E-value=0.064 Score=42.15 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=63.7
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCe--EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~--v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+.-.+.|||||-|-+-+.++..... ++|.++ ..+.+..+..+..... .|...-..++.+...+-......-.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~-----~~a~~~~~ni~vlr~namk~lpn~f 134 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRR-----TSAEGQYPNISVLRTNAMKFLPNFF 134 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhc-----cccccccccceeeeccchhhccchh
Confidence 4457999999999888888877654 899998 4488888777754431 1111223344444322211100001
Q ss_pred cCCC--ccEEEEeccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 119 VAPP--FDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 119 ~~~~--fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..++ -+..+.-++-+... .-..++.....+|+++|.+|...-.
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 1111 22222223322211 2345667777889999999887654
No 277
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.34 E-value=0.05 Score=45.60 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE-E----eeeCC
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-E----LDWGN 112 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~-~----~d~~~ 112 (199)
.|.+||=+|+|+ |+.++..|+. |+. |+.+|.. .-++.|++ +.-. .+... . .++.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~---------------~~~~~~~~~~~~~~~~ 232 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT---------------VTDPSSHKSSPQELAE 232 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe---------------EEeeccccccHHHHHH
Confidence 478999999997 9999888875 775 9999984 48888887 3111 11100 0 00000
Q ss_pred CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.-........+|+.+-. +-.+.-+++....++.+|.+.++.-
T Consensus 233 ~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 233 LVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred HHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEecc
Confidence 00001112357776654 4567778888888999999877763
No 278
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.14 E-value=0.067 Score=45.51 Aligned_cols=99 Identities=24% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065 41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~ 115 (199)
..+.+|+=+|||+ |++++.+++. |+. |+++|. ++-++.|++..... .+..... +... ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---------------~~~~~~~~~~~~-~~ 230 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---------------VVVNPSEDDAGA-EI 230 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---------------EeecCccccHHH-HH
Confidence 3444899999998 9998888865 665 999998 44777776632111 0111100 0000 00
Q ss_pred ccccC-CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 116 IKAVA-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 116 ~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
..... ..+|+++-.-- ....+....++++++|.+.+..-.
T Consensus 231 ~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 231 LELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 01112 36999875532 556888999999999987655443
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=95.11 E-value=0.055 Score=44.68 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 85 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~ 85 (199)
+|..|||-.||+|..++++.++|-+.+|+|+ ++.++.|++.+..
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999 5588999888754
No 280
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.10 E-value=0.085 Score=40.01 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=65.7
Q ss_pred CCcEEEeCCCcChHHHHH-HhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-ccC
Q 029065 43 GKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~l-a~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~ 120 (199)
+.+|+=|||=+-...+.- ...+.+++..|+..-. ..- ... .+...|.......+ ...
T Consensus 26 ~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF-------~~~-------------~~~-~F~fyD~~~p~~~~~~l~ 84 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF-------EQF-------------GGD-EFVFYDYNEPEELPEELK 84 (162)
T ss_pred CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH-------Hhc-------------CCc-ceEECCCCChhhhhhhcC
Confidence 467888877553333222 1124568888875411 111 112 45567776654433 225
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
+.||+||+.+|+...+.+.....+++.++++++.++++....
T Consensus 85 ~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 85 GKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 799999999999888888899999999999999988887643
No 281
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.8 Score=39.13 Aligned_cols=131 Identities=15% Similarity=0.067 Sum_probs=70.4
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC--C----eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG--C----NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g--~----~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
+|.+|||+.+-+|-=++.+.... . .|++.|... -+...+..+..-. ...+.+...+.....
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDASLFP 222 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccceecc
Confidence 57899999999986554443322 2 699999733 3333322222111 112222222221111
Q ss_pred cc------cccCCCccEEEEeccccCCc-----------------------ChHHHHHHHHHhcCCCcEEEEEEEe----
Q 029065 115 HI------KAVAPPFDYIIGTDVVYAEH-----------------------LLEPLLQTIFALSGPKTTILLGYEI---- 161 (199)
Q Consensus 115 ~~------~~~~~~fD~Ii~~~~~~~~~-----------------------~~~~~l~~l~~~l~~~g~i~i~~~~---- 161 (199)
.. ......||-|++.-+.-++. .--.++....++|++||.++-++..
T Consensus 223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 223 NIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred ccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 11 11124688887653331111 1234566667889999999888754
Q ss_pred cChhHHHHHHHHHHhCCeEEEec
Q 029065 162 RSTSVHEQMLQMWKSNFNVKLVP 184 (199)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~v~~~~ 184 (199)
++..+.+..++.++..+..-.+.
T Consensus 303 eNEaVV~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 303 ENEAVVQEALQKVGGAVELVDVS 325 (375)
T ss_pred hhHHHHHHHHHHhcCcccceeec
Confidence 44556777777776666554443
No 282
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.057 Score=41.42 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred EEEEeeeCCCcccc-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEE
Q 029065 104 QAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 182 (199)
Q Consensus 104 ~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~ 182 (199)
++...|+..+..++ .....||+|++.+|+...+.+.+--..++++.+++-.++++...+-.++....+....-.|.++
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe- 194 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE- 194 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence 66677777665443 2346799999999999999999999999999999888888876544444444444333344443
Q ss_pred ecCCCcCcccCC
Q 029065 183 VPKAKESTMWGN 194 (199)
Q Consensus 183 ~~~~~~~~~~~~ 194 (199)
..+-+.+.|+.
T Consensus 195 -H~~nLaNeF~c 205 (217)
T KOG3350|consen 195 -HERNLANEFRC 205 (217)
T ss_pred -hhcccccceeE
Confidence 33445555553
No 283
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.90 E-value=0.25 Score=40.97 Aligned_cols=82 Identities=16% Similarity=0.189 Sum_probs=59.2
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
-+.+++|+.||==|+|.|+ +++.+|++|++++..|++. ..+...+.+..+| ++....+|..+
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~ 97 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISD 97 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCC
Confidence 3467889999999999985 8888899999999999844 4444444444433 56778888877
Q ss_pred Cccc-------cccCCCccEEEEeccc
Q 029065 113 EDHI-------KAVAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~-------~~~~~~fD~Ii~~~~~ 132 (199)
.++. ...-+..|++|-|.-+
T Consensus 98 ~eei~~~a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 98 REEIYRLAKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecccc
Confidence 7533 1223688999877555
No 284
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.87 E-value=0.007 Score=49.62 Aligned_cols=93 Identities=19% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+..++|+|||-|-.... .-..-+++.|++. .+.-+++. + .......|. ...+...
T Consensus 45 ~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~----~--------------~~~~~~ad~---l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRS----G--------------GDNVCRADA---LKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCcC--CCcceeeecchhhhhccccccC----C--------------Cceeehhhh---hcCCCCC
Confidence 488999999999832111 1233578888754 44333321 1 001222222 2334456
Q ss_pred CCccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEEEE
Q 029065 121 PPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i~i 157 (199)
..||.+++..+++|.+ ....+++.+.+.++|||.+.+
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 7999999999998843 567788999999999997433
No 285
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.81 E-value=0.016 Score=50.08 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=43.0
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhh
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 88 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~ 88 (199)
.|..|.|+.||.|..++.++..+++|++.|. +++++..+.|+..|..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 3678999999999999999999999999998 6799999999998865
No 286
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.77 E-value=0.16 Score=41.04 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=48.1
Q ss_pred CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
..+|+|||||.=.+++..... ++.|++.|++. +++....-+...+. ..++...|.... .+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~ 168 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP 168 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence 569999999998777766654 46799999954 88888777666543 456666665432 23
Q ss_pred CCCccEEEEeccc
Q 029065 120 APPFDYIIGTDVV 132 (199)
Q Consensus 120 ~~~fD~Ii~~~~~ 132 (199)
....|+.+.--++
T Consensus 169 ~~~~DlaLllK~l 181 (251)
T PF07091_consen 169 KEPADLALLLKTL 181 (251)
T ss_dssp TSEESEEEEET-H
T ss_pred CCCcchhhHHHHH
Confidence 5679998876444
No 287
>PRK13699 putative methylase; Provisional
Probab=94.61 E-value=0.097 Score=41.86 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEW 85 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~ 85 (199)
+|..|||-.||+|..++++.+.|-+++|+|++ +..+.+.+.+..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 57799999999999888888989999999994 488888777654
No 288
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.55 E-value=0.028 Score=39.50 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=26.8
Q ss_pred CcEEEeCCCcChHHHHHHhhCCeEEEeec
Q 029065 44 KRVIELGAGCGVAGFGMALLGCNVITTDQ 72 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~ 72 (199)
....|||||.|++--.|...|..-.|+|.
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccccc
Confidence 46999999999999999999999999995
No 289
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.11 Score=43.81 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=47.1
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
..+++||.||.|-+++.+...|.+ +.++|+.+ +++.-+.|... -.+...|...........
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------------~~~~~~di~~~~~~~~~~ 65 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------------GDIILGDIKELDGEALRK 65 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------------CceeechHhhcChhhccc
Confidence 458999999999999999999988 77889854 66655555431 122233333222111111
Q ss_pred CCccEEEEeccc
Q 029065 121 PPFDYIIGTDVV 132 (199)
Q Consensus 121 ~~fD~Ii~~~~~ 132 (199)
..+|+|++.+|.
T Consensus 66 ~~~DvligGpPC 77 (328)
T COG0270 66 SDVDVLIGGPPC 77 (328)
T ss_pred cCCCEEEeCCCC
Confidence 179999998776
No 290
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.23 Score=37.17 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 38 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
+...+| +.+|||+|-|.+-+.++++|.. -++++++. .+...+...-+.+. .....+..-|+-..+
T Consensus 69 ~~n~~G-klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----------~k~trf~RkdlwK~d- 135 (199)
T KOG4058|consen 69 RGNPKG-KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----------AKSTRFRRKDLWKVD- 135 (199)
T ss_pred cCCCCC-cEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----------ccchhhhhhhhhhcc-
Confidence 333345 6899999999999999999965 99999977 76777776656553 223344433332111
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
..+-++-+|+..+ +..+++..++..-+..+..++-+
T Consensus 136 --l~dy~~vviFgae-----s~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 136 --LRDYRNVVIFGAE-----SVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred --ccccceEEEeehH-----HHHhhhHHHHHhhCcCCCeEEEE
Confidence 1122344455444 45666777777667777665443
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.36 E-value=0.17 Score=42.46 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=30.6
Q ss_pred EEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHH
Q 029065 46 VIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNV 83 (199)
Q Consensus 46 VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~ 83 (199)
|+||.||.|-+++.+...|.+ +.++|+.+ +++.-+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999999999988 66789855 666666654
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.29 E-value=0.62 Score=39.10 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=53.6
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+||=.|||. |..++.+|+. |+ +|+++|.+ +-++.+++ .+... .+.....++.. ..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~-----------vi~~~~~~~~~---~~ 230 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADK-----------LVNPQNDDLDH---YK 230 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcE-----------EecCCcccHHH---Hh
Confidence 578999999875 7777777754 77 58899974 45555543 12100 01111111110 01
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
...+.+|+|+-.- --...+....++++++|.+++..
T Consensus 231 ~~~g~~D~vid~~------G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 231 AEKGYFDVSFEVS------GHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ccCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 1123589887542 22346677778899999876654
No 293
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.00 E-value=0.06 Score=44.65 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=40.7
Q ss_pred CCcEEEeCCCcChHHH-HHHhhCCe-EEEeech-hHHHHHHHHHHHhhh
Q 029065 43 GKRVIELGAGCGVAGF-GMALLGCN-VITTDQI-EVLPLLKRNVEWNTS 88 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl-~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~ 88 (199)
+..|.||-+|.|..++ ++-+.||+ |++.|.+ .+++..+++++.|+.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 5789999999999999 88899998 9999995 599999999998864
No 294
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.90 E-value=0.95 Score=40.40 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=65.9
Q ss_pred CCcEEEeCCCcChHHHHHHh-hC-----CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 43 GKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~-~g-----~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+|.|--||+|.+-+.++. .+ ..+.|.+. +.....|+-|.-.++... .+.....|-.....
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~~ 255 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNPK 255 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCCc
Confidence 44999999999854443332 22 33899998 458899999998887421 11111111110000
Q ss_pred c--cccCCCccEEEEeccccC---C----------------------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 116 I--KAVAPPFDYIIGTDVVYA---E----------------------HLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 116 ~--~~~~~~fD~Ii~~~~~~~---~----------------------~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
. ....+.||+|++++|+.. . .....+++.+...|+|+|.+-|..+
T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 0 113467999999999851 0 0136788888999999876555544
No 295
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.83 E-value=0.42 Score=39.97 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=36.3
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHH
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 85 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~ 85 (199)
+|..++|.-+|.|-.+..++.. ..+|+++|. +.++..+++.+..
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 4668999999999999888865 367999998 5599999887654
No 296
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.81 E-value=2.2 Score=33.41 Aligned_cols=78 Identities=24% Similarity=0.262 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++||=.|++.|+ +...++..|++|++++.++ .++.+...+... .++.+...|+.+....
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~ 68 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESA 68 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHH
Confidence 457899999997553 3333445689999998743 333332222211 1466777888755422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-+..|.++.+...
T Consensus 69 ~~~~~~~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 69 RNVIEKAAKVLNAIDGLVVTVGG 91 (238)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCC
Confidence 1 011356887766543
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=92.55 E-value=0.18 Score=41.62 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=37.5
Q ss_pred EEEEeeeCCCccccccCCCccEEEEeccccCCc----------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 104 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------------LLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 104 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----------------~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.+.+.|...... ...+++||+|+++++++... ....++..+.++|+|+|.+++....
T Consensus 10 ~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 10 TIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred EEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 455555443211 12356899999999875311 1257889999999999999886443
No 298
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.48 E-value=0.71 Score=38.91 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec---hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ---IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~---~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
++.+||=+|+|. |..++.+|+ .|++|++++. ++ -++.++ ..+. +. .+....+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~~ 230 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTPV 230 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccch
Confidence 578999999875 777776665 4888999985 22 333332 2221 11 11111100
Q ss_pred c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 116 I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 116 ~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
. ....+.+|+|+-.- .-...+....+.++++|.+.+..
T Consensus 231 ~~~~~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 231 AEVKLVGEFDLIIEAT------GVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hhhhhcCCCCEEEECc------CCHHHHHHHHHHccCCcEEEEEe
Confidence 0 01124688887642 12346777788899999876543
No 299
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.39 E-value=0.86 Score=40.87 Aligned_cols=98 Identities=27% Similarity=0.358 Sum_probs=58.1
Q ss_pred CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC----
Q 029065 40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN---- 112 (199)
Q Consensus 40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~---- 112 (199)
...+.+|+=+|||. |+.++.+++ +|+.|+++|.. +.++.++. + +. ++...+..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l---Ga---------------~~v~v~~~e~g~~ 221 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M---GA---------------EFLELDFKEEGGS 221 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CC---------------eEEeccccccccc
Confidence 35578999999996 787776665 59999999984 46555543 1 21 111111100
Q ss_pred ---------Cc-c------ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065 113 ---------ED-H------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 156 (199)
Q Consensus 113 ---------~~-~------~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~ 156 (199)
.+ . ....-..+|+|+..-.+-....+.-+.+...+.++||+.++
T Consensus 222 ~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 222 GDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred cccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 0 01112469999887655454454456677777788776543
No 300
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.33 E-value=0.75 Score=36.24 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCCcEEEeCCCcChHHHHHHhh------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 42 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
+...|+|+|.-.|--.++.|.. .++|+++|+. .... +..++.+- ..++|++.++|..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp-----------~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP-----------MSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc-----------ccCceEEEECCCCCHH
Confidence 6789999999877555555532 3569999972 2111 11111111 1358999998876664
Q ss_pred cccc---cC--CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 115 HIKA---VA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 115 ~~~~---~~--~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.... .. ....+|+ -|.=+..+.....++....++++|+.+++.+.
T Consensus 99 ~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp HHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 3221 11 2233444 35555667788888889999999998777653
No 301
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=92.17 E-value=3.6 Score=33.72 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=58.0
Q ss_pred CCCCCCCcEEEeCCCcC---hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G---~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+..+.++.+|--|...| .++..+++.|++|+.++. .+.++.+...+...+.. ..++....+|..+.
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT----------GGKVLAIVCDVSKE 72 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC----------CCeeEEEECcCCCH
Confidence 45678999999999776 467888899999999997 44666665555444321 34567777787655
Q ss_pred ccc--------cccCCCccEEEEeccc
Q 029065 114 DHI--------KAVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~--------~~~~~~fD~Ii~~~~~ 132 (199)
+.. ....++.|+++.+.-.
T Consensus 73 ~~~~~l~~~~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 73 VDVEKLVEFAVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence 321 1224689999877544
No 302
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.09 E-value=0.95 Score=39.16 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=48.8
Q ss_pred CcEEEeCCCc-Ch-HHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 44 KRVIELGAGC-GV-AGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 44 ~~VLdlGcG~-G~-~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++||=||||. |. .+.-+|..+ .+|+..|.+ +.++.+.... ..+++...+|..+...+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence 5799999964 64 334445666 679999974 4444443332 22678888888777555444
Q ss_pred CCCccEEEEeccccC
Q 029065 120 APPFDYIIGTDVVYA 134 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~ 134 (199)
-..+|+||..-+.+.
T Consensus 66 i~~~d~VIn~~p~~~ 80 (389)
T COG1748 66 IKDFDLVINAAPPFV 80 (389)
T ss_pred HhcCCEEEEeCCchh
Confidence 556799988766544
No 303
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=91.63 E-value=0.069 Score=43.62 Aligned_cols=108 Identities=23% Similarity=0.109 Sum_probs=60.8
Q ss_pred cCccCCCCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065 33 KGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 111 (199)
Q Consensus 33 ~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 111 (199)
.+..+|....++++.++|||.+..++.+++....|...|. ..+.-....+...+... .. ...-+.-..+|.
T Consensus 81 ~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~---~~-----~~~~~~~~~~~~ 152 (262)
T KOG2497|consen 81 DLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDL---SL-----EVRDSAPELNQA 152 (262)
T ss_pred HHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhccccc---cc-----cccccchhHHHH
Confidence 3455777788999999999999988777776555555553 22222222222222110 00 011112222221
Q ss_pred CCcccc-ccCCCccEEEEeccccCCcChHHHHHHHHHhc
Q 029065 112 NEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 149 (199)
Q Consensus 112 ~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 149 (199)
.....+ .....+|+|+++++.|. .....++.....+|
T Consensus 153 ~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 153 FLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 111111 11234999999999999 88888888887764
No 304
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.56 E-value=0.082 Score=37.33 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=30.4
Q ss_pred CccEEEEeccccC------CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 122 PFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 122 ~fD~Ii~~~~~~~------~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
+||+|+|-.+.-+ ++-+..+++.+..+|+|||.+++..+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899998877633 567899999999999999999998765
No 305
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.38 E-value=6.1 Score=31.30 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=50.1
Q ss_pred CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
...+++++||=.|++.|+ +...++..|++|++++.+ +.++.+...+...+ .++.+..+|+.+.
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE 72 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence 445789999999986654 334455669999999873 34444444343322 2467777888765
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.... ..-++.|+++.+...
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4221 112468998876543
No 306
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.14 E-value=0.64 Score=41.23 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHH
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRN 82 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~ 82 (199)
..+++||.||.|-+++.+...|.+ |.++|+.. +.+.-+.|
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHH
Confidence 459999999999888888888887 67779855 65555555
No 307
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.00 E-value=0.58 Score=40.05 Aligned_cols=104 Identities=20% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee-eCCCcc
Q 029065 41 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-WGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~ 115 (199)
.++.+||.+|||+ |...+.+|+. |. +|+++|.+ +.++.+++.. + ...+.....+ +...-.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~------------~~vi~~~~~~~~~~~l~ 247 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G------------AETINFEEVDDVVEALR 247 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C------------cEEEcCCcchHHHHHHH
Confidence 3578999999987 8777777755 76 49999874 4666655431 1 0011111110 100000
Q ss_pred ccccCCCccEEEEeccc---------------cCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVV---------------YAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~---------------~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.......+|+|+-.-.. ....+....+..+.+.++++|.+++..
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 00112368988764210 011223567788888999999876654
No 308
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.97 E-value=0.25 Score=41.50 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=48.7
Q ss_pred EEeCCCcC-hHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC---cccc-cc
Q 029065 47 IELGAGCG-VAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHIK-AV 119 (199)
Q Consensus 47 LdlGcG~G-~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~-~~ 119 (199)
+|||.|.- +..+.-++. +...+++|+.+ -++.|..|+..|+. .+.+.+++.+-... +... ..
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~~~ 175 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKEES 175 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhccCc
Confidence 68888763 333333333 44599999966 78899999988864 34555555432111 1111 11
Q ss_pred CCCccEEEEeccccCC
Q 029065 120 APPFDYIIGTDVVYAE 135 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~ 135 (199)
+..||..++++++|..
T Consensus 176 e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 176 EIIYDFCMCNPPFFEN 191 (419)
T ss_pred cceeeEEecCCchhhc
Confidence 3469999999999754
No 309
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.66 E-value=0.35 Score=36.66 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=66.5
Q ss_pred CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh--HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065 43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
|++++=+|+..--.=..+...||. |+.++++. +.+..+..+. .+...|+... ....
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------------si~p~df~~~--~~~y 60 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------------SILPVDFAKN--WQKY 60 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------------cccHHHHHHH--HHHh
Confidence 678888888865444444455765 88888654 1111111110 0001111100 0112
Q ss_pred CCCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhH--------HHHHHHHHHhCCeE
Q 029065 120 APPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSV--------HEQMLQMWKSNFNV 180 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~--------~~~~~~~~~~~~~v 180 (199)
.++||.+.+-..+-| +.-....+..++++||+||.++++.|...+.. -...+.++-.+|+.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 457888777666632 12345667788899999999999998765321 11234556677776
Q ss_pred EEe
Q 029065 181 KLV 183 (199)
Q Consensus 181 ~~~ 183 (199)
...
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 444
No 310
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.22 E-value=0.79 Score=39.52 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCcEEEeCCCcChHHHHHH-hhCCe-EEEeec----hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 42 KGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ----IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la-~~g~~-v~~~D~----~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
++....|+|+|.|-+-.+.| ..+++ =+|+++ ++ +..+...+....... +.....++..+.++.+..
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~f-------Gk~~~~~~~i~gsf~~~~ 264 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHF-------GKKPNKIETIHGSFLDPK 264 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHh-------CCCcCceeecccccCCHH
Confidence 35688999999986555555 44443 555543 22 322332222222111 111335677777776655
Q ss_pred cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
.........++|+++..-+.+....++- .+.+-+++|.+++=..+.+
T Consensus 265 ~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 265 RVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLV 311 (419)
T ss_pred HHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccccc
Confidence 4445567899999999988877766666 7788889999877666543
No 311
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.18 E-value=3.8 Score=33.58 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=47.2
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech--hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
..++++++|=.|++.|+ ++..+++.|++|++++.. ..++.....+... ..++.+..+|+.+.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 108 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDE 108 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCH
Confidence 35678899999987664 455556679999888763 2233322222222 12566777887655
Q ss_pred cccc-------ccCCCccEEEEecc
Q 029065 114 DHIK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~ 131 (199)
.... ...+..|++|.+..
T Consensus 109 ~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 109 AFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 4221 11246898886644
No 312
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.15 E-value=1.8 Score=35.75 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+||=+|||. |+.++.+|+ .|++ |+++|.. +-++.+... . . .+....
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------------~-----i~~~~~---- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------------V-----LDPEKD---- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------------c-----cChhhc----
Confidence 567899999875 877777775 4887 6667763 333333211 0 0 110000
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
....+|+|+-+- --...+....++++++|.+.+..
T Consensus 197 -~~~g~Dvvid~~------G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 -PRRDYRAIYDAS------GDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -cCCCCCEEEECC------CCHHHHHHHHHhhhcCcEEEEEe
Confidence 124688887542 22346677778899999876544
No 313
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=90.00 E-value=1.9 Score=35.16 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=67.7
Q ss_pred CcEEEeCCCcChHHHHHHhh-CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-----
Q 029065 44 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----- 117 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----- 117 (199)
..|+.||||-=.-..-+... +.+++=+|.+++++.-++.+..++.. ...+..++..|+. .....
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence 47999999975444444322 45677778888877777766654321 1345667777765 21110
Q ss_pred -ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 118 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 118 -~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
.....--++++-+++++ .+....+++.+.....||+.+++....
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 11123446666666644 557888999999988888888776543
No 314
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.87 E-value=0.57 Score=37.24 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=62.6
Q ss_pred CCCcEEEeCCCcCh-HHHHHHhhC---CeEEEeech-hHHHHHHHHHHHh---hhccc----------cCCC--------
Q 029065 42 KGKRVIELGAGCGV-AGFGMALLG---CNVITTDQI-EVLPLLKRNVEWN---TSRIS----------QMNP-------- 95 (199)
Q Consensus 42 ~~~~VLdlGcG~G~-~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~---~~~~~----------~~~~-------- 95 (199)
.+.++.|=-||.|- +++....++ ..|+++|++ ++++.|++|+.+. |+.-+ +..|
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34699999999994 444333333 359999995 4999999998643 11000 0000
Q ss_pred ---------CCCCCCcEEEEEeeeCCCcccc--ccCCCccEEEEeccccCCcC---------hHHHHHHHHHhcCCCcEE
Q 029065 96 ---------GSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTI 155 (199)
Q Consensus 96 ---------~~~~~~~i~~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~~~~---------~~~~l~~l~~~l~~~g~i 155 (199)
.........+...|+.+..... ......|+||..=++-.... ...++..+...|-+.+++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0111223556666655432211 11233699988655433333 556899999999666666
Q ss_pred EEEEEecC
Q 029065 156 LLGYEIRS 163 (199)
Q Consensus 156 ~i~~~~~~ 163 (199)
.+++..++
T Consensus 211 ~v~~k~~K 218 (246)
T PF11599_consen 211 AVSDKGRK 218 (246)
T ss_dssp EEEESSSS
T ss_pred EEecCCcc
Confidence 66655543
No 315
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.61 E-value=1 Score=34.94 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=34.1
Q ss_pred ccEEEEeccccCCcC-------------------hHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHHHHHHHhCCeE
Q 029065 123 FDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV 180 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~-------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~~v 180 (199)
.|+|+.++|++.... ...++..+.++|+|+|.+++....+... ......+.++ +|.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence 377888777654333 5777888889999999988877654433 3444445555 4544
No 316
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.64 E-value=9.2 Score=30.04 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=55.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech--hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
++++++|=.|+..|+ +...++..|.+|++++.+ ..++.....+... ..++.+..+|+.+.+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~ 70 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEES 70 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHHH
Confidence 567899999975543 333344568898888652 2333332222221 1245667778766543
Q ss_pred cc-------ccCCCccEEEEeccccCC-------------cChHHHHHHHHHhcCCCcEE-EEE
Q 029065 116 IK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTI-LLG 158 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~~~~-------------~~~~~~l~~l~~~l~~~g~i-~i~ 158 (199)
.. ..-+..|+++.+...... .....+++.+...++.+|.+ +++
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 71 VAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 21 011468887765432110 01335666666666555554 443
No 317
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.56 E-value=0.12 Score=36.87 Aligned_cols=84 Identities=26% Similarity=0.302 Sum_probs=51.9
Q ss_pred CcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc---cc-c-ccCCCcc
Q 029065 52 GCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI-K-AVAPPFD 124 (199)
Q Consensus 52 G~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~-~-~~~~~fD 124 (199)
|.|+.++.+|+. |++|+++|.++ -++.+++ .+.. ..++..+.+ .. . .....+|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~----------------~~~~~~~~~~~~~i~~~~~~~~~d 60 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD----------------HVIDYSDDDFVEQIRELTGGRGVD 60 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES----------------EEEETTTSSHHHHHHHHTTTSSEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc----------------ccccccccccccccccccccccce
Confidence 457778888864 88899999854 5555543 2211 113333221 11 1 1124799
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
+|+-.- .....++...++++++|.+.+..-.
T Consensus 61 ~vid~~------g~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 61 VVIDCV------GSGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp EEEESS------SSHHHHHHHHHHEEEEEEEEEESST
T ss_pred EEEEec------CcHHHHHHHHHHhccCCEEEEEEcc
Confidence 988652 2367888899999999998776544
No 318
>PRK08324 short chain dehydrogenase; Validated
Probab=88.49 E-value=4 Score=37.89 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=47.4
Q ss_pred CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+...+|++||=.|++.|+ +...++..|++|+++|.+. .++.+...+... ..+.+..+|..+.
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------------~~v~~v~~Dvtd~ 482 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------------DRALGVACDVTDE 482 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------------CcEEEEEecCCCH
Confidence 344578899999875442 3344445699999999743 433333222111 2566777787655
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.... ...+++|+|+.+..+
T Consensus 483 ~~v~~~~~~~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 483 AAVQAAFEEAALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4221 112468999877554
No 319
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.26 E-value=1.1 Score=38.53 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.4
Q ss_pred CcEEEeCCCcChHHHHHHhh-CCeEEEeechh
Q 029065 44 KRVIELGAGCGVAGFGMALL-GCNVITTDQIE 74 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~ 74 (199)
..|.|+|+|.|-++.+++.. |..|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 58999999999999999965 77899999865
No 320
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.05 E-value=1.2 Score=37.71 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=27.3
Q ss_pred CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHH
Q 029065 41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLL 79 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a 79 (199)
-++.+||=.|||. |...+.+|+. |++ |+++|.++ -++.+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 3578899999865 6667777754 875 99998743 44444
No 321
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=87.81 E-value=6.1 Score=32.20 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=80.8
Q ss_pred EEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccccCCCcc
Q 029065 47 IELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFD 124 (199)
Q Consensus 47 LdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD 124 (199)
|..=||+-.++..+.+..-+++++++ ++=....+.++.. ..++.+...|--... ..-++.++=-
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~--------------d~~vrv~~~DG~~~l~a~LPP~erRg 158 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG--------------DRRVRVLRGDGFLALKAHLPPKERRG 158 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC--------------CcceEEEecCcHHHHhhhCCCCCcce
Confidence 67778887777777776778999998 5544555666542 236677665532111 1112345677
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcC--CCcEEEEEEEecChhHHHHHHHHHHh
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWKS 176 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~--~~g~i~i~~~~~~~~~~~~~~~~~~~ 176 (199)
+|+..+++-...+++.+++.+...++ ++|+..|=+|.........|.+.+..
T Consensus 159 lVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 159 LVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred EEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhh
Confidence 88888888778899999999999987 68887777887766667778777754
No 322
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.70 E-value=3 Score=33.14 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ ++..++..|++|++++.+ +.++.....+... ..++....+|+.+....
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-------------GGKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHH
Confidence 578999999987764 455556679999999874 3444443333322 12456677777655321
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+..+
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112578999877544
No 323
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.69 E-value=3.4 Score=33.08 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=51.5
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
+...++++++|=.|++.|+ +...++..|++|+.++.+ +.++.+...+... ..++.+..+|+.+
T Consensus 4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~ 70 (265)
T PRK07097 4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL-------------GIEAHGYVCDVTD 70 (265)
T ss_pred cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCC
Confidence 3445678999999998764 445556679999988863 3444444433322 1256777788865
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
..... ..-++.|+++.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 71 EDGVQAMVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 54221 112568999877654
No 324
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.47 E-value=0.86 Score=37.31 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec
Q 029065 38 PSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ 72 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~ 72 (199)
..+.+|+.+.||.+|||++|..+-+.|..|++.|+
T Consensus 23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDl 57 (330)
T COG3392 23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDL 57 (330)
T ss_pred hcccCCCeeeeeccCccHHHHHHHHhcchhhhchH
Confidence 35567889999999999999999999999999997
No 325
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.47 E-value=9.5 Score=30.46 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|+++|.+. .++.....+ ..++.+..+|+.+....
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----------------GERARFIATDITDDAAI 67 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------------CCeeEEEEecCCCHHHH
Confidence 567899999986653 4555566799999998743 222222111 12466777888765422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+...
T Consensus 68 ~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468998877544
No 326
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.44 E-value=3 Score=33.59 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ ++..++..|++|++++.+ +-++.+...+.... ..++.+..+|..+....
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~i 73 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKREDL 73 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence 578999999987764 555666679999999873 34444444332211 12567777888766422
Q ss_pred c------ccCCCccEEEEecc
Q 029065 117 K------AVAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~------~~~~~fD~Ii~~~~ 131 (199)
. ..-++.|+++.+.-
T Consensus 74 ~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 74 ERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHhhCCCcEEEECCC
Confidence 1 01256898886643
No 327
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.30 E-value=12 Score=31.42 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=49.0
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++||=.|++.|+ +...++..|++|++++.+ +.++.....+...+ .++.+...|..+.+..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~v 72 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEAV 72 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHHH
Confidence 567889999986664 444556679999999873 35554444443322 2566777887665422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|++|.+...
T Consensus 73 ~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 73 QAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHCCCCCEEEECCCc
Confidence 1 112578998876543
No 328
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.24 E-value=1.5 Score=36.16 Aligned_cols=95 Identities=21% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
.+.+||-.|+|. |...+.+|+ .|.+|++++.++ ..+.+++ .+.. ..+.....++... ....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~-----------~~~~~~~~~~~~~-~~~~ 228 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD-----------EVLNSLDDSPKDK-KAAG 228 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC-----------EEEcCCCcCHHHH-HHHh
Confidence 466888888763 666666665 588899998743 5454433 1210 0000000000000 0011
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
..+.+|+++.+- .....+....+.|+++|.++..
T Consensus 229 ~~~~~D~vid~~------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 229 LGGGFDVIFDFV------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred cCCCceEEEECC------CCHHHHHHHHHHhhcCCEEEEE
Confidence 235689887531 1245677788999999987654
No 329
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.11 E-value=6.1 Score=32.30 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCcEEEeCCCcChHHHHH----HhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 43 GKRVIELGAGCGVAGFGM----ALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~l----a~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
+...+|||+|+..=+..+ +..| .+++-+|+++ +++...+.+...-.. =.+.....|+.....
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-----------l~v~~l~~~~~~~La 147 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-----------LEVNALCGDYELALA 147 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-----------CeEeehhhhHHHHHh
Confidence 579999999987544333 3334 3699999966 777666655544211 134444555533322
Q ss_pred ccccCCCccEEEEecccc--CCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 116 IKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
..+..++-=.++...++- .+.....++..+...++||-.+++.--.++
T Consensus 148 ~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 148 ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 222112222233333332 366788999999999999998888765544
No 330
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.05 E-value=8.1 Score=32.26 Aligned_cols=87 Identities=16% Similarity=0.023 Sum_probs=50.7
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+|.+||=.|+|. |...+.+|+ .|++|++++.++ -++.+++ .+.. .+ .+....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~------------~v----i~~~~~----- 219 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA------------SA----GGAYDT----- 219 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc------------ee----cccccc-----
Confidence 578999999864 656666664 488899998643 4444433 2211 11 111100
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
..+.+|+++..+.. ...+....+.++++|.+.+..
T Consensus 220 ~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 12357876654321 246777778899999876644
No 331
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.00 E-value=2.9 Score=35.19 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=49.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|++.|+ +...++..|++|++++.+ +.++.....+...+ ..+.+...|+.+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence 567899999986664 445556679999999873 35555444443332 2456677788665422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...+++|++|.+..+
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112578999877543
No 332
>PRK13699 putative methylase; Provisional
Probab=86.98 E-value=2.5 Score=33.71 Aligned_cols=59 Identities=14% Similarity=0.352 Sum_probs=37.5
Q ss_pred cCCCccEEEEeccccC------C---------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeE
Q 029065 119 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV 180 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~------~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v 180 (199)
.++++|+|+.++|+.- . +-...++..+.++|+|||.+++-...+.. ..+...+ ..+|.+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l 91 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV 91 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence 3678999999988751 0 11356778889999999987764333222 2344444 346755
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.80 E-value=3.8 Score=33.30 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=51.3
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+||=+|+|+ |..++.+|+. |++ |+++|.++ -++.+++ .+.. ..+..... .......
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~-~~~~~~~- 182 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----------ALAEPEVL-AERQGGL- 182 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----------EecCchhh-HHHHHHH-
Confidence 678999999875 6666666654 876 88888643 4444433 1210 00110000 0000000
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.....+|+++-.- --...+....+.++++|.+++..
T Consensus 183 ~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 183 QNGRGVDVALEFS------GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred hCCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEec
Confidence 0123588887531 12356677778889999876544
No 334
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.71 E-value=7.7 Score=30.82 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=44.1
Q ss_pred CcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--
Q 029065 44 KRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 117 (199)
Q Consensus 44 ~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 117 (199)
+++|=.|++.|+ ++..++..|++|++++.+ +.++.+...+. ..++.+..+|+.+.....
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~~ 66 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDAA 66 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHHH
Confidence 568888876553 444455669999999863 34444333221 125677788887654221
Q ss_pred --cc----CCCccEEEEeccc
Q 029065 118 --AV----APPFDYIIGTDVV 132 (199)
Q Consensus 118 --~~----~~~fD~Ii~~~~~ 132 (199)
.. .+++|+++.+...
T Consensus 67 ~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 67 LADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHcCCCCCEEEECCCC
Confidence 00 3578999876544
No 335
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.59 E-value=3.5 Score=34.11 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCe-EEEeech
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCN-VITTDQI 73 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~-v~~~D~~ 73 (199)
.++++++|=+|+| |. +...++..|++ |+.++.+
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3578899999997 53 33334567886 8888863
No 336
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.42 E-value=1.2 Score=35.85 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCC-CcEEEeCCCcChHHHHHHhh--------CCe---EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE
Q 029065 40 KLKG-KRVIELGAGCGVAGFGMALL--------GCN---VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 107 (199)
Q Consensus 40 ~~~~-~~VLdlGcG~G~~sl~la~~--------g~~---v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (199)
.++| +++.||.+-+|.+|..+++. +++ ++++|+..|. . ...+.-.+
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------P---------------I~GV~qlq 95 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------P---------------IEGVIQLQ 95 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------c---------------cCceEEee
Confidence 3455 69999999999999999964 232 9999964431 1 22345556
Q ss_pred eeeCCCccc-----cccCCCccEEEEecccc--CCc---------ChHHHHHHHHHhcCCCcEEEEE
Q 029065 108 LDWGNEDHI-----KAVAPPFDYIIGTDVVY--AEH---------LLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 108 ~d~~~~~~~-----~~~~~~fD~Ii~~~~~~--~~~---------~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
.|++..... .+...+-|+|++.+..- ..+ .+...+.....+|+|||.++--
T Consensus 96 ~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 96 GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 666655322 12245889999874431 112 2344455556779999985443
No 337
>PRK05854 short chain dehydrogenase; Provisional
Probab=86.35 E-value=5.6 Score=33.01 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=50.0
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++++|=.|++.|+ ++..+++.|++|++++.+ +-.+.+...+..... ...+.+..+|+.+...
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~s 79 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLAS 79 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHHH
Confidence 4678999999987764 445556679999988763 333333333322210 2257777888876542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...++.|++|.+.-+
T Consensus 80 v~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 80 VAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHhCCCccEEEECCcc
Confidence 21 113578999877544
No 338
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.02 E-value=14 Score=29.43 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|++++.+ +.++.....+... ...+.+..+|+.+....
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~ 74 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPEAT 74 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence 578899999976553 334455569999999873 3444333333221 12567777887665432
Q ss_pred c-------ccCCCccEEEEecc
Q 029065 117 K-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~ 131 (199)
. ..-+++|+|+.+..
T Consensus 75 ~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 75 AGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 01247899887643
No 339
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.98 E-value=13 Score=28.15 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=35.0
Q ss_pred CCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 120 APPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
.+.||.|+-+-|-.. ...+..++..+.++|+++|.|+|+.....+
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 468999999866443 124777888889999999999999887654
No 340
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.97 E-value=3.9 Score=33.81 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=50.2
Q ss_pred CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
...++++++|=.|++.|+ ++..++..|++|+.+|. + ..++.+...+... ..++.+..+|+.+
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dv~d 73 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA-------------GAKAVAVAGDISQ 73 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc-------------CCeEEEEeCCCCC
Confidence 355789999999998775 55566677999999986 2 2333333333222 1256677777765
Q ss_pred Cccccc------cCCCccEEEEeccc
Q 029065 113 EDHIKA------VAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~~~------~~~~fD~Ii~~~~~ 132 (199)
.+.... .-++.|++|.+..+
T Consensus 74 ~~~~~~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 74 RATADELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 432110 02578998877544
No 341
>PRK06128 oxidoreductase; Provisional
Probab=85.89 E-value=12 Score=30.63 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh---HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
.+++++||=.|+..|+ ++..++..|++|+.+..+. ..+.....+... ...+.+..+|+.+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~ 118 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE-------------GRKAVALPGDLKDE 118 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc-------------CCeEEEEecCCCCH
Confidence 3678899999986654 4455556799988776421 122222222221 12456677787655
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.... ..-++.|++|.+..+
T Consensus 119 ~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 119 AFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 3211 112468999877553
No 342
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.77 E-value=7 Score=30.61 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=27.3
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHH
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKR 81 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~ 81 (199)
.+++++||=.||+.|+ +...++..|.+|++++.+. .++....
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence 3568899999976553 3444555689999998733 4443333
No 343
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.76 E-value=3.7 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.1
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeech
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI 73 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~ 73 (199)
.|.+||=.|+|. |...+.+|+. |++|++++.+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 577888899875 7777777754 8888888763
No 344
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.70 E-value=2.3 Score=33.57 Aligned_cols=94 Identities=27% Similarity=0.274 Sum_probs=52.6
Q ss_pred CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065 41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~- 116 (199)
.++.+||-.|+|. |...+.+++ .|.+|++++.++ ..+.++. .+.. .. ++.......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--------------~~--~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD--------------HV--IDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc--------------ee--ccCCcCCHHH
Confidence 4578999999986 545555554 488899998743 4444422 1110 00 111111100
Q ss_pred ---cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 117 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 117 ---~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....+.+|+++.+-. ....+..+.+.++++|.++....
T Consensus 193 ~~~~~~~~~~d~vi~~~~------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ELRLTGGGGADVVIDAVG------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHhcCCCCCEEEECCC------CHHHHHHHHHhcccCCEEEEEcc
Confidence 112357999986421 11456777788889998766543
No 345
>PRK08589 short chain dehydrogenase; Validated
Probab=85.60 E-value=6.6 Score=31.65 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++++|=.|++.|+ ++..++..|++|++++.++.++.....+... ..++....+|..+.....
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 70 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK 70 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence 568899999987764 4555666799999998654333333333222 124677778887654221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
..-++.|++|.+..+
T Consensus 71 ~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 71 DFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHcCCcCEEEECCCC
Confidence 112568999877644
No 346
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.55 E-value=1.3 Score=35.61 Aligned_cols=33 Identities=30% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh
Q 029065 42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 74 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~ 74 (199)
+..+++|..||+|.+++.+...+.+|+..|+..
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred CCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 578999999999988888877888899999844
No 347
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.54 E-value=3.7 Score=32.71 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=49.4
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|++.|+ ++..++..|++|++++.+ +.++.....+..... ..++.+..+|+.+....
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~ 73 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAASV 73 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHHH
Confidence 568899999987664 445555679999999873 344444443332100 23567777888665422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+..+
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 74 AAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 1 112478998876543
No 348
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.22 E-value=4.4 Score=32.86 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=48.1
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ ++..++..|++|+++|.+ +.++.+...+...+ .++.+..+|+.+....
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v 70 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV 70 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence 678899999987764 445555679999999873 34443333332221 2466677787665422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|++|.+.-+
T Consensus 71 ~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 71 THLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112468998877544
No 349
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.09 E-value=6.7 Score=31.18 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|++++.+ +.++.+...+.... ..++.+...|+.+....
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~ 72 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEAR 72 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence 468899999987664 344455679999999873 34444433333221 22566777777654322
Q ss_pred c---ccCCCccEEEEeccc
Q 029065 117 K---AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~---~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+...
T Consensus 73 ~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 73 EQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1 112578998877543
No 350
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=85.04 E-value=7.3 Score=31.95 Aligned_cols=92 Identities=22% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCCCcEEEeCCCc--Ch-HHHH-HHhh---CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 41 LKGKRVIELGAGC--GV-AGFG-MALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 41 ~~~~~VLdlGcG~--G~-~sl~-la~~---g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
..+.+||.+|+|+ |. +|-. +.+. ++-++-.|+.+.. .. .-.....|...
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------SD----------------a~~~~~~Dc~t- 115 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------SD----------------ADQSIVGDCRT- 115 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------S----------------SSEEEES-GGG-
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------cc----------------cCCceeccccc-
Confidence 3578999999996 53 3433 3332 5556666754410 00 11222333321
Q ss_pred ccccccCCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 114 DHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
-..+.+||+|++. + |. .....-+...++..|+-||.+.|-...
T Consensus 116 ---~~~~~k~DlIiSD-m-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 116 ---YMPPDKFDLIISD-M-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE 171 (299)
T ss_dssp ---EEESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred ---cCCCCcccEEEEe-c-ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence 1336789999985 3 31 223555667778888999998887664
No 351
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.00 E-value=7.2 Score=32.61 Aligned_cols=110 Identities=16% Similarity=0.072 Sum_probs=66.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
....+.||=+|.|-|-.-...+++ -..++..|+.. +++..++-...... .+. ..++...-+|-... .
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~------~~~v~l~iGDG~~f--l 188 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYE------GKKVKLLIGDGFLF--L 188 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccC------CCceEEEeccHHHH--H
Confidence 345689999999987544444443 33578888855 77766665433211 111 23566555443211 1
Q ss_pred cc-cCCCccEEEE--eccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 117 KA-VAPPFDYIIG--TDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 117 ~~-~~~~fD~Ii~--~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.. ..++||+||. +++... .-....+.+.+.+.||++|.+....
T Consensus 189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 22 2678999985 355443 2346778889999999999765544
No 352
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.92 E-value=3 Score=35.80 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeech
Q 029065 41 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI 73 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~ 73 (199)
+.+++|+=+|+|. |......+ ..|++|+.+|..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567899999984 65555544 458899999974
No 353
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=84.64 E-value=7.9 Score=30.70 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++++|=.|++.|+ ++..++..|++|+.+|.++........+... ...+.+..+|+.+.+..
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence 3578899999987664 4555566799999998754222222222221 12456677787664321
Q ss_pred c-------ccCCCccEEEEec
Q 029065 117 K-------AVAPPFDYIIGTD 130 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~ 130 (199)
. ...+..|+++.+.
T Consensus 72 ~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 1 1124789988765
No 354
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.50 E-value=2.1 Score=36.35 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=26.7
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLK 80 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~ 80 (199)
.+.+||=+|+|. |...+.+|+ .|+ +|+++|.++ -++.++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 567888899874 666666665 488 599998743 444443
No 355
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.17 E-value=15 Score=28.52 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=43.2
Q ss_pred CCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++||=.|++. .+|..++ ..|++|++++.+ +.++.+...+... ..+.+..+|..+...
T Consensus 4 ~~~~~ilItGatg-~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~ 68 (237)
T PRK07326 4 LKGKVALITGGSK-GIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEAD 68 (237)
T ss_pred CCCCEEEEECCCC-cHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHH
Confidence 3568899999644 3344444 558899999863 3333333322211 256777777765532
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...+.+|+|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 69 VQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112468998866433
No 356
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=84.15 E-value=7.7 Score=30.75 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+..+++++||=.|++.|+ +...++..|++|++++. .+.++.+...+... ..++.+...|+.+.
T Consensus 6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~ 72 (255)
T PRK06113 6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSE 72 (255)
T ss_pred ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence 445678999999987764 33445566999988886 33444433332221 12456667787655
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
+... ..-+++|+++.+..+
T Consensus 73 ~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 73 QELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4221 112468998876543
No 357
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.05 E-value=2.4 Score=32.46 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=54.5
Q ss_pred EEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhcc-ccCCC----CCCCCCcEEEEEeeeCCCcccc
Q 029065 46 VIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRI-SQMNP----GSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 46 VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~-~~~~~----~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
|.=||+|+ | .++..++..|.+|+..|.+ +.++.++..+....... ..-.. ......++.+.. | +.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-d------l~ 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT-D------LE 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES-S------GG
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc-C------HH
Confidence 55578886 5 4677777889999999984 47777776665421100 00000 000012333221 1 11
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 157 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i 157 (199)
... ..|+|+-+- .-..+..++++..+.+++.|+..+.-
T Consensus 75 ~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 75 EAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp GGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred HHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence 122 678887653 23345568888888888888775433
No 358
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.98 E-value=4.3 Score=33.28 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
..+++++||=.|++.|+ ++..++..|++|++++.+ +.++.....+.. ...+....+|+.+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~ 70 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA 70 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence 34678999999987764 455555679999999873 333333222211 123455557776553
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ...++.|++|.+.-+
T Consensus 71 ~v~~~~~~~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 71 AMQAAAEEAVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 221 112578999987654
No 359
>PRK08303 short chain dehydrogenase; Provisional
Probab=83.92 E-value=7.1 Score=32.37 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=26.0
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ 72 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~ 72 (199)
..++++++|=.|++.|+ ++..++..|++|++++.
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 34678999999998774 45555567999998875
No 360
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=83.65 E-value=8.7 Score=26.67 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=42.1
Q ss_pred CccEEEEeccccCCc--------------ChHHHHHHHHHhcCCCcEEEEEEEec---ChhHHHHHHHHHHhCCeEEEec
Q 029065 122 PFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR---STSVHEQMLQMWKSNFNVKLVP 184 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~~v~~~~ 184 (199)
.||+||.|||+-... ....++....++| +|.+.+..|.. .......+.+.+.....+..+-
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~ 79 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII 79 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence 599999999974321 2444777777778 78776666542 1223455666666666665554
Q ss_pred CCCcCc-ccC
Q 029065 185 KAKEST-MWG 193 (199)
Q Consensus 185 ~~~~~~-~~~ 193 (199)
...... .|.
T Consensus 80 ~f~~~~~vF~ 89 (106)
T PF07669_consen 80 DFGERKKVFE 89 (106)
T ss_pred ECCCcccCCC
Confidence 444333 554
No 361
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.62 E-value=4.9 Score=31.96 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++++||=.|++.|+ ++..++..|++|+.++.+.-.+.+...+... ...+.+..+|..+.+..
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA 78 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 4678999999998764 4455566799988887643222332222221 12567777887765422
Q ss_pred c-------ccCCCccEEEEecc
Q 029065 117 K-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~ 131 (199)
. ..-+..|+++.+..
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246899887644
No 362
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.62 E-value=7.1 Score=30.83 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=47.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++||=.|++.|+ ++..++..|++|++++.++ -++.+...+... ..++.....|+.+....
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 69 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQC 69 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHH
Confidence 457899988886664 4455556799999999733 333333333222 12467777887655322
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+|+.+...
T Consensus 70 ~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 70 ANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHcCCccEEEECCcc
Confidence 1 112468998877643
No 363
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.51 E-value=11 Score=30.01 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.++++++|=.|++.|+ ++..++..|++|++++.+ +-++.+...+..... ..++....+|+.+.+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD 73 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence 3578999999987764 445555679999999873 344444333322210 1246667778766542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ..-++.|+++.+..+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112568998877544
No 364
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.45 E-value=12 Score=32.40 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=63.2
Q ss_pred cEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCcc
Q 029065 45 RVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 124 (199)
Q Consensus 45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 124 (199)
.||=|+=..|.++..++..+.. ..+|.--....++.|+..|++. .+.++... -. ....+.+|
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~~~~~~~n~~~n~~~----------~~~~~~~~--~~-----~~~~~~~d 108 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY-SIGDSYISELATRENLRLNGID----------ESSVKFLD--ST-----ADYPQQPG 108 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC-eeehHHHHHHHHHHHHHHcCCC----------cccceeec--cc-----ccccCCCC
Confidence 7999999999999999965443 3356433445667788888742 11222221 11 12245699
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
+|+.--+ =........+..+...+.+++.+++....++
T Consensus 109 ~vl~~~P-K~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 109 VVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 8876322 1223566677778888999999876666543
No 365
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.38 E-value=5.9 Score=32.54 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=48.5
Q ss_pred CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
...+++++||=.|++.|+ +...++..|++|++++.+ +.++.+...+... ...+.+..+|..+.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~ 101 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDL 101 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence 344578899999987664 334455668999999874 3444443333221 12456677777655
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
+... ...+..|+++.+...
T Consensus 102 ~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 102 DAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3211 112478999877543
No 366
>PRK06181 short chain dehydrogenase; Provisional
Probab=83.38 E-value=13 Score=29.54 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=41.9
Q ss_pred CcEEEeCCCcChHHHH----HHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 44 KRVIELGAGCGVAGFG----MALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~----la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
++||=.|+..| +|.. ++..|.+|++++.+. ..+.+...+... ..++.+..+|..+.+....
T Consensus 2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~ 67 (263)
T PRK06181 2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER 67 (263)
T ss_pred CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence 56777776444 3444 445688999998743 333333333222 2256777788766542210
Q ss_pred -------cCCCccEEEEeccc
Q 029065 119 -------VAPPFDYIIGTDVV 132 (199)
Q Consensus 119 -------~~~~fD~Ii~~~~~ 132 (199)
.-+..|+|+.+...
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 11468998877543
No 367
>PRK07478 short chain dehydrogenase; Provisional
Probab=83.30 E-value=5.3 Score=31.62 Aligned_cols=79 Identities=24% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|++++.+ +.++.+...+...+ .++.+..+|+.+.+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 70 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------------GEAVALAGDVRDEAYA 70 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence 567899988887664 445555679999999863 34444433333221 2466677777655321
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+..+
T Consensus 71 ~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 71 KALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112478998877543
No 368
>PRK07035 short chain dehydrogenase; Provisional
Probab=83.27 E-value=8.9 Score=30.23 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=47.5
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+++++||=.|++.|+ +...++..|++|++++.+ +.++...+.+...+ .++.+...|+.+...
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 71 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-------------GKAEALACHIGEMEQ 71 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence 3567899999988764 445555679999999973 34444433332221 245566677765542
Q ss_pred cc-------ccCCCccEEEEecc
Q 029065 116 IK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~ 131 (199)
.. ..-++.|+++.+..
T Consensus 72 ~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 72 IDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 11246899886654
No 369
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=83.24 E-value=7.6 Score=31.64 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHh-hCCe--EEEeechh
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITTDQIE 74 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~-~g~~--v~~~D~~~ 74 (199)
..-.|.+||=||+++|..=-+.+. -|.. |.+++.+.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 334588999999999974444443 3554 88888754
No 370
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.22 E-value=6.1 Score=31.44 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++++|=.|++.|+ ++..+++.|++|++++..+. +.+...+... ..++.+..+|..+.+...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 71 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL-------------GRKFHFITADLIQQKDID 71 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc-------------CCeEEEEEeCCCCHHHHH
Confidence 568999999988774 45556677999998875321 1222222221 225667778876654221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
..-++.|+++.+.-+
T Consensus 72 ~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 72 SIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 112578998877544
No 371
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.18 E-value=10 Score=32.05 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=61.1
Q ss_pred CCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+.+.+|.=||.|. |..+--+| -.|+.|+.+|.+. -+++...-. ..++........ ...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f----------------~~rv~~~~st~~---~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF----------------GGRVHTLYSTPS---NIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh----------------CceeEEEEcCHH---HHH
Confidence 3445778889886 76665555 4589999999853 333332221 123443332221 111
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 156 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~ 156 (199)
..-...|++|..=.+-....+.-+.+.+.+.++||+.++
T Consensus 227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 223579999998776667778888888889999987653
No 372
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.08 E-value=6.7 Score=30.93 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=47.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ ++..++..|++|++++.+ +.++.+.+.+...+ ..+....+|..+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~ 69 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI 69 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence 568899999998875 556666779999998863 34444444333322 1345555666554322
Q ss_pred c-------ccCC-CccEEEEec
Q 029065 117 K-------AVAP-PFDYIIGTD 130 (199)
Q Consensus 117 ~-------~~~~-~fD~Ii~~~ 130 (199)
. ..-+ +.|+++.+.
T Consensus 70 ~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 70 RHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1 1114 789988775
No 373
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=82.97 E-value=17 Score=29.52 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH- 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~- 115 (199)
.++|.+|==|+.+|. .+..++..|++|+++.- .+.|+.....+.. ..+....+|..+...
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------------~~~~~~~~DVtD~~~~ 68 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---------------GAALALALDVTDRAAV 68 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------------CceEEEeeccCCHHHH
Confidence 346778888888774 55666677999999986 4455554443322 145777788876643
Q ss_pred ------ccccCCCccEEEEeccccC
Q 029065 116 ------IKAVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 116 ------~~~~~~~fD~Ii~~~~~~~ 134 (199)
.+..-+++|+++-|.-++-
T Consensus 69 ~~~i~~~~~~~g~iDiLvNNAGl~~ 93 (246)
T COG4221 69 EAAIEALPEEFGRIDILVNNAGLAL 93 (246)
T ss_pred HHHHHHHHHhhCcccEEEecCCCCc
Confidence 1222367999998866543
No 374
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.86 E-value=4 Score=32.32 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=48.1
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|++.|+ +...++..|++|++++.+ +-++.+...+... ..++.....|+.+....
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 71 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV 71 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 568899999986654 444455668999999863 3444333333222 22567777888655322
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|+|+.+...
T Consensus 72 ~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 72 KALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468999877543
No 375
>PRK07985 oxidoreductase; Provisional
Probab=82.83 E-value=25 Score=28.80 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech---hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
..++++++|=.|++.|+ ++..++..|++|++++.+ +.++.+...+... ...+.+..+|+.+
T Consensus 45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~ 111 (294)
T PRK07985 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC-------------GRKAVLLPGDLSD 111 (294)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc-------------CCeEEEEEccCCC
Confidence 34778999999986654 556666679998887642 2233332222222 1245667778766
Q ss_pred Ccccc-------ccCCCccEEEEecc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~ 131 (199)
.+... ..-++.|+++.+..
T Consensus 112 ~~~~~~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 112 EKFARSLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 53211 11246898887643
No 376
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.70 E-value=3.1 Score=34.63 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=26.0
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeechh-HHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQIE-VLPLL 79 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~~-~l~~a 79 (199)
+|.+||=+|+|. |...+.+++ .|++ |+++|.++ -++.+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 478899898864 666666664 4888 99998643 44444
No 377
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.67 E-value=4.5 Score=32.78 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=63.8
Q ss_pred eCCCcChHHHHHH--hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-ccccccCCCcc
Q 029065 49 LGAGCGVAGFGMA--LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAVAPPFD 124 (199)
Q Consensus 49 lGcG~G~~sl~la--~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~fD 124 (199)
+..-+|...+... +..-+.++.|+ +.-.+..+.++... .++.+.+.|--.. ...-++..+=-
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allPP~~rRg 127 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLPPPERRG 127 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S-TTS-E
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCCCCCCCe
Confidence 4455665555444 44567999998 66666666555432 3677777554211 11122344566
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcC--CCcEEEEEEEecChhHHHHHHHHHH
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK 175 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~--~~g~i~i~~~~~~~~~~~~~~~~~~ 175 (199)
+|+..+++-...+...++..+...++ +.|++.|=+|.......+.|.+.+.
T Consensus 128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~ 180 (245)
T PF04378_consen 128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK 180 (245)
T ss_dssp EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence 88888887778999999999999987 7888888888876666677777765
No 378
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.54 E-value=21 Score=27.84 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|+..|+ +...++..|.+|++++.+. -++.+...+.. + ..+.+..+|+.+....
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-------------~~~~~~~~D~~~~~~~ 68 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-------------GRAIAVAADVSDEADV 68 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-------------CeEEEEECCCCCHHHH
Confidence 567889999886543 4445556699999999743 33333232221 1 2466777787655432
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...+++|+|+.+...
T Consensus 69 ~~~~~~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 69 EAAVAAALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468999877544
No 379
>PRK12937 short chain dehydrogenase; Provisional
Probab=82.28 E-value=21 Score=27.73 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
+++++||=.|+..|+ ++..+++.|++|+.+.. ....+...+.+... ..++.+...|+.+.+.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 69 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-------------GGRAIAVQADVADAAA 69 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 567889999986653 44455567898877654 22233232222222 2256777777765432
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ..-++.|+++.+...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 012468988876543
No 380
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.17 E-value=4.9 Score=33.87 Aligned_cols=96 Identities=21% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCCCcEEEeCC-C-cChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065 41 LKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGc-G-~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~ 115 (199)
-+|.+||=.|+ | .|...+.+|+. |++|++++.++ -++.++.. .+.. ..+..... ++... .
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~-----------~vi~~~~~~~~~~~-i 221 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD-----------EAFNYKEEPDLDAA-L 221 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC-----------EEEECCCcccHHHH-H
Confidence 35789999998 4 47777777754 88899888633 44444322 1210 01111100 11100 0
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
.....+.+|+|+-. . . ...+....+.++++|.+.+.
T Consensus 222 ~~~~~~gvD~v~d~--v----G-~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 222 KRYFPEGIDIYFDN--V----G-GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHCCCCcEEEEEC--C----C-HHHHHHHHHHhccCCEEEEE
Confidence 00112368888743 1 1 24667777888999987654
No 381
>PRK06194 hypothetical protein; Provisional
Probab=82.16 E-value=4.9 Score=32.49 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|++.|+ +...++..|++|+++|.+ +.++.....+... ..++.+..+|+.+....
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~~~ 70 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------------GAEVLGVRTDVSDAAQV 70 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHH
Confidence 457889977765543 333444569999999973 3444333332221 12466677787655322
Q ss_pred cc-------cCCCccEEEEeccc
Q 029065 117 KA-------VAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~~-------~~~~fD~Ii~~~~~ 132 (199)
.. ..++.|+|+.+.-.
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 12468999877554
No 382
>PRK05650 short chain dehydrogenase; Provisional
Probab=82.11 E-value=18 Score=28.89 Aligned_cols=75 Identities=19% Similarity=0.068 Sum_probs=42.4
Q ss_pred cEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc---
Q 029065 45 RVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 117 (199)
Q Consensus 45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 117 (199)
+||=.|+..|+ ++..++..|.+|++++.+. -++.+...+... ...+.+..+|+.+.....
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~~ 68 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------------GGDGFYQRCDVRDYSQLTALA 68 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHHH
Confidence 57777775553 4445556699999998633 333333333222 225667777876543211
Q ss_pred ----ccCCCccEEEEeccc
Q 029065 118 ----AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 ----~~~~~fD~Ii~~~~~ 132 (199)
...+++|++|.+...
T Consensus 69 ~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 69 QACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 112478998877554
No 383
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.04 E-value=20 Score=27.89 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCcChHHHH----HHhhCCeEEEe-ec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 41 LKGKRVIELGAGCGVAGFG----MALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~----la~~g~~v~~~-D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
+.++++|=.|+. |.++.. ++..|++|+.+ +. .+..+.....+... ..++.+...|+.+..
T Consensus 3 ~~~~~ilI~Gas-g~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~ 68 (247)
T PRK05565 3 LMGKVAIVTGAS-GGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE 68 (247)
T ss_pred CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence 557788888863 333443 44568898887 75 33333333332221 225677788887654
Q ss_pred cccc-------cCCCccEEEEeccc
Q 029065 115 HIKA-------VAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~~-------~~~~fD~Ii~~~~~ 132 (199)
.... .-+++|+|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 69 DVENLVEQIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 2211 11368999876544
No 384
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.96 E-value=22 Score=27.69 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=44.1
Q ss_pred CCCCcEEEeCCCcChHHHHH----HhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~l----a~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+++++|=.|++.| +|..+ +..|++|++++.+ +.++.....+... ..++.+..+|+.+.+.
T Consensus 5 ~~~~~vlItGa~g~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 70 (250)
T PRK12939 5 LAGKRALVTGAARG-LGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------------GGRAHAIAADLADPAS 70 (250)
T ss_pred CCCCEEEEeCCCCh-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 56788997787544 34444 4568999988863 3333333333221 1256777788865542
Q ss_pred cc-------ccCCCccEEEEecc
Q 029065 116 IK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~ 131 (199)
.. ..-++.|+|+.+.-
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 71 VQRFFDAAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 00146899876643
No 385
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.88 E-value=19 Score=30.13 Aligned_cols=103 Identities=25% Similarity=0.279 Sum_probs=58.9
Q ss_pred cEEEeCCCc--ChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~--G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+|+=+|||. ++++..|++.|..|+.+-.++-++..+++ ++.+... ..+......- .........
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~~ 67 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALGP 67 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcCC
Confidence 577899996 57888899999657777554433333332 4321000 0000000000 011122357
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
+|+|+..- -.-...+++..+..++++...+++....-..
T Consensus 68 ~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~ 106 (307)
T COG1893 68 ADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQNGLGH 106 (307)
T ss_pred CCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEeCCCcH
Confidence 99998752 2346788999999999999887666554433
No 386
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.56 E-value=7.7 Score=30.34 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=45.8
Q ss_pred CCCCcEEEeCCCcChHHHH----HHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~----la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++||=.|++.| +|.. ++..|.+|++++.+ +.+......+... ...+.+..+|+.+...
T Consensus 4 ~~~~~ilItGasg~-iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 4 LEGRVALVTGAARG-IGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------------GGKARARQVDVRDRAA 69 (251)
T ss_pred CCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 45788998886544 3444 44568899999863 3333333333222 1246777888876532
Q ss_pred cc-------ccCCCccEEEEeccccC
Q 029065 116 IK-------AVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~~~ 134 (199)
.. ...+++|+|+.+.....
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 21 11146899887754443
No 387
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=80.97 E-value=11 Score=29.89 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=47.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...+++.|++|+.++.+ +.++.+...+... ...+....+|+.+.+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~ 73 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQEV 73 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHHH
Confidence 568899999987664 444555669999999863 3434333333221 12456666777655422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...+++|+++.+...
T Consensus 74 ~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 74 EAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112568999887643
No 388
>PRK06720 hypothetical protein; Provisional
Probab=80.94 E-value=16 Score=27.63 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=47.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++.+|=.|.+.|+ +...++..|++|+.+|.+ +.++.+...+...+ ....+..+|..+....
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~v 80 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG-------------GEALFVSYDMEKQGDW 80 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence 468899999987764 444555679999999973 33333333332211 2345566777544321
Q ss_pred c-------ccCCCccEEEEeccccC
Q 029065 117 K-------AVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~~~ 134 (199)
. ..-++.|+++.+..++.
T Consensus 81 ~~~v~~~~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 81 QRVISITLNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCC
Confidence 1 11256899888755443
No 389
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.88 E-value=7.6 Score=33.20 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeech
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI 73 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~ 73 (199)
.|.+||=.|+|. |...+.+|+. |++|++++.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578899899875 7777777754 8888888863
No 390
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.86 E-value=5.4 Score=33.66 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=54.3
Q ss_pred CcEEEeCCCc-C-hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCC-CCCCCCcEEEEEeeeCCCcccccc
Q 029065 44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP-GSDLLGSIQAVELDWGNEDHIKAV 119 (199)
Q Consensus 44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~ 119 (199)
++|-=||+|+ | -++..++..|.+|+..|. ++.++.++..+...........+ ......++.+.. .....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence 4688889986 4 366677788999999998 44666655544322110000000 000011222211 11111
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCc
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 153 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g 153 (199)
-...|+|+-+ ..-.......++..+.+.++|+.
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 2457877765 22334456677777888877776
No 391
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.74 E-value=14 Score=29.06 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=25.7
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI 73 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~ 73 (199)
.+...++++||=.|+..|+ +...++..|++|+++|.+
T Consensus 6 ~~~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 6 KPDLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3456689999999975543 333444568899999973
No 392
>PRK07791 short chain dehydrogenase; Provisional
Probab=80.74 E-value=11 Score=30.83 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech----------hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI----------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV 106 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~----------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~ 106 (199)
.++++++|=.|++.|+ ++..++..|++|+.+|.. +.++.+...+... ..++.+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~ 69 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA-------------GGEAVAN 69 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc-------------CCceEEE
Confidence 3578999999998775 445566679998888752 3222222222221 1245666
Q ss_pred EeeeCCCcccc-------ccCCCccEEEEeccc
Q 029065 107 ELDWGNEDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 107 ~~d~~~~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.+|..+.+... ..-++.|++|.+.-+
T Consensus 70 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 70 GDDIADWDGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 77776553211 112578999877554
No 393
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.59 E-value=9.2 Score=30.17 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=46.2
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++||=.|++.|+ +...++..|++|++++.+ +.++.+...+... ..++.+..+|+.+.+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~ 73 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQSI 73 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHH
Confidence 568899999965543 334444568899999863 3444443333222 12466777787654321
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|+|+.+...
T Consensus 74 ~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 74 KAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112468998876543
No 394
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.53 E-value=23 Score=28.13 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 41 LKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 41 ~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
++++++|=.|++ .|+ ++..+++.|++|+.++.++ ..+.+++ .. ...+.+..+|..+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dl~~~~ 68 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK---LV-------------DEEDLLVECDVASDE 68 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh---hc-------------cCceeEEeCCCCCHH
Confidence 578999999986 343 5566667799999887543 2221111 11 114566677876553
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ..-++.|+++.+.-+
T Consensus 69 ~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 69 SIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcccc
Confidence 221 112578998877544
No 395
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.28 E-value=8.7 Score=31.94 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=56.9
Q ss_pred CcEEEeCCCc--ChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065 44 KRVIELGAGC--GVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 120 (199)
Q Consensus 44 ~~VLdlGcG~--G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 120 (199)
.+|+=+|+|. |.++..|++.|..|+.++-. +-++..+++ +|+.+.. + .....+. .... .....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~-----~-g~~~~~~-~~~~----~~~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVE-----Q-GQASLYA-IPAE----TADAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEee-----C-Ccceeec-cCCC----Ccccc
Confidence 4688899996 56888888889999999863 333333321 1221100 0 0000100 0000 01123
Q ss_pred CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
++||+|+..-=-| .....+..+..++.+++.++.....
T Consensus 69 ~~~D~viv~vK~~---~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 69 EPIHRLLLACKAY---DAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred cccCEEEEECCHH---hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 5899987753222 3567788888889998876555443
No 396
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.14 E-value=12 Score=29.60 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=46.7
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+++++||=.|+..|+ ++..++..|++|++++.++ .++.+...+...+ .++....+|..+...
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~D~~~~~~ 73 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------------LSAHALAFDVTDHDA 73 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------ceEEEEEccCCCHHH
Confidence 4678999999974443 3344445699999998743 3343333332221 245667778766542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...++.|+++.+...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468998877544
No 397
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.06 E-value=12 Score=29.32 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|+++|.+. .++.+...+...+ .++.....|..+.+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 69 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------------TEVRGYAANVTDEEDV 69 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHHH
Confidence 468899999975543 3334445688999998743 3443333333221 2456666776543221
Q ss_pred c-------ccCCCccEEEEecc
Q 029065 117 K-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~ 131 (199)
. ..-++.|+|+.+..
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 70 EATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 0 11146899887654
No 398
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.02 E-value=11 Score=29.67 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=43.5
Q ss_pred CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
+++||=.|++.|+ +...++..|++|++++.+ +..+..+...... ...+.+..+|+.+......
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 68 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------------GLALRVEKLDLTDAIDRAQ 68 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcceEEEeeCCCHHHHHH
Confidence 4578888886553 333444568999988763 3333332222222 1246777788876543321
Q ss_pred -cCCCccEEEEecc
Q 029065 119 -VAPPFDYIIGTDV 131 (199)
Q Consensus 119 -~~~~fD~Ii~~~~ 131 (199)
.....|+++.+..
T Consensus 69 ~~~~~id~vi~~ag 82 (257)
T PRK09291 69 AAEWDVDVLLNNAG 82 (257)
T ss_pred HhcCCCCEEEECCC
Confidence 2347899987654
No 399
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=79.97 E-value=8 Score=30.48 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.0
Q ss_pred CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065 135 EHLLEPLLQTIFALSGPKTTILLGYEI 161 (199)
Q Consensus 135 ~~~~~~~l~~l~~~l~~~g~i~i~~~~ 161 (199)
......+-..+.+.|||||++.+.+..
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566888999999999999998887754
No 400
>PLN02253 xanthoxin dehydrogenase
Probab=79.73 E-value=7.3 Score=31.37 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=46.7
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
..++++++|=.|+..|+ ++..++..|++|+++|.. +..+.....+.. ..++.+..+|..+..
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~d~~ 79 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG--------------EPNVCFFHCDVTVED 79 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC--------------CCceEEEEeecCCHH
Confidence 34568899989876553 344455679999999863 333322222210 125677788887654
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ..-++.|++|.+..+
T Consensus 80 ~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 80 DVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 221 112468998876543
No 401
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=79.70 E-value=13 Score=29.68 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
.+++++||=.|++.|+ ++..++..|++|+++.. .+.++.....+.... ..++.+..+|..+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 72 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY------------GIKAKAYPLNILEPE 72 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHH
Confidence 4578999999987764 45556667999888753 233333333332210 225677778876553
Q ss_pred cc-------cccCCCccEEEEecc
Q 029065 115 HI-------KAVAPPFDYIIGTDV 131 (199)
Q Consensus 115 ~~-------~~~~~~fD~Ii~~~~ 131 (199)
.. ...-+++|+++.+..
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~nAg 96 (260)
T PRK08416 73 TYKELFKKIDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHHHHHHHHHhcCCccEEEECcc
Confidence 21 111257899887653
No 402
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=79.62 E-value=7.9 Score=31.12 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=47.0
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++++|=.|++.|+ +...++..|++|++++.+ +.++.....+... ..++.+...|+.+...
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 73 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA-------------GGEALAVKADVLDKES 73 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence 3568899999987654 445555679999999873 3333333333222 1246667777765532
Q ss_pred cc-------ccCCCccEEEEecc
Q 029065 116 IK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~ 131 (199)
.. ..-++.|+++.+..
T Consensus 74 v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 21 01257899887644
No 403
>PRK09242 tropinone reductase; Provisional
Probab=79.57 E-value=14 Score=29.30 Aligned_cols=82 Identities=12% Similarity=0.193 Sum_probs=48.5
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.++++++|=.|++.|+ +...++..|++|++++.+ +.++.....+..... ...+....+|+.+.+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-----------EREVHGLAADVSDDED 74 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCHHH
Confidence 3578999999997654 445555669999999863 344444333322200 1256667778765432
Q ss_pred c-------cccCCCccEEEEeccc
Q 029065 116 I-------KAVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~-------~~~~~~fD~Ii~~~~~ 132 (199)
. ...-++.|+++.+...
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 1112578998876543
No 404
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.48 E-value=2.8 Score=34.31 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCcEEEeCCCcChHHHHHHhhC-------CeEEEeec
Q 029065 42 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 72 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~g-------~~v~~~D~ 72 (199)
++..++|+|||.|.+|.+++..- ..++.+|-
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 44699999999999999888653 45999996
No 405
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.39 E-value=14 Score=28.99 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=46.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+++++||=.|++.|+ +...++..|++|++++.+.. +.+...+... ...+.+..+|+.+.+...
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 68 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP-SETQQQVEAL-------------GRRFLSLTADLSDIEAIK 68 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHhc-------------CCceEEEECCCCCHHHHH
Confidence 578999999997663 44455566999999986331 2222222221 124677778876654221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
...++.|++|.+...
T Consensus 69 ~~~~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 69 ALVDSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 112468999877544
No 406
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.30 E-value=6 Score=33.06 Aligned_cols=38 Identities=39% Similarity=0.573 Sum_probs=26.1
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeechh-HHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQIE-VLPLL 79 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~~-~l~~a 79 (199)
++.+||=+|||+ |...+.+|+ .|++ |+++|.++ -++.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 577899999875 666666665 4887 78888633 44444
No 407
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.00 E-value=15 Score=29.13 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
++++++|=.|+..| +|..++ ..|++|+.++.+ +-++.+...+... ..++.+..+|+.+.+.
T Consensus 10 ~~~k~ilItGa~g~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~~ 75 (259)
T PRK08213 10 LSGKTALVTGGSRG-LGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEAD 75 (259)
T ss_pred cCCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHH
Confidence 56889999996443 344444 458999999863 3444443333222 1256677888876543
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...++.|+|+.+...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112468998877543
No 408
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=78.82 E-value=3.1 Score=33.53 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCcEEEeCCCcChHHHHHHhh----------CCeEEEeechhHHHHHHH
Q 029065 43 GKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKR 81 (199)
Q Consensus 43 ~~~VLdlGcG~G~~sl~la~~----------g~~v~~~D~~~~l~~a~~ 81 (199)
..+|+|+|+|.|.++.-+.+. ..+++.+|.++.+...++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 369999999999877666542 236999999764444443
No 409
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.56 E-value=9.1 Score=30.01 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+++++|=.|++.|+ +...++..|++|++++.+. ....+...+... ..++.+...|+.+.....
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~ 68 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK-------------GGNAQAFACDITDRDSVD 68 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHHH
Confidence 57889988876543 3334445688999998633 333333333222 125677777776543221
Q ss_pred c-------cCCCccEEEEecc
Q 029065 118 A-------VAPPFDYIIGTDV 131 (199)
Q Consensus 118 ~-------~~~~fD~Ii~~~~ 131 (199)
. ..++.|++|.+..
T Consensus 69 ~~~~~~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 69 TAVAAAEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 1 1246798876654
No 410
>PRK06114 short chain dehydrogenase; Provisional
Probab=78.56 E-value=24 Score=27.91 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
.++++++|=.|++.|+ ++..++..|++|++++.+ + .++.+...+... ..++.....|..+.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA-------------GRRAIQIAADVTSKA 71 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 3578899989876663 334444569999999863 2 334443333322 124566677776553
Q ss_pred ccc-------ccCCCccEEEEecccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVVY 133 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~~ 133 (199)
... ..-++.|++|.+....
T Consensus 72 ~i~~~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 72 DLRAAVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 211 1125689998776543
No 411
>PRK07102 short chain dehydrogenase; Provisional
Probab=78.10 E-value=12 Score=29.33 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=41.8
Q ss_pred CcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--
Q 029065 44 KRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 117 (199)
Q Consensus 44 ~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 117 (199)
++||=.|+..|+ +...++..|++|+++|.+ +-.+.....+.... ..++.+..+|..+.....
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG------------AVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEecCCCChHHHHHH
Confidence 568878865443 334444568899999863 33333323322221 236777888887654321
Q ss_pred --ccCCCccEEEEec
Q 029065 118 --AVAPPFDYIIGTD 130 (199)
Q Consensus 118 --~~~~~fD~Ii~~~ 130 (199)
.....+|+++.+.
T Consensus 70 ~~~~~~~~d~vv~~a 84 (243)
T PRK07102 70 LDSLPALPDIVLIAV 84 (243)
T ss_pred HHHHhhcCCEEEECC
Confidence 1123579988654
No 412
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.90 E-value=44 Score=29.08 Aligned_cols=33 Identities=45% Similarity=0.664 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCc-Ch-HHHHHHhhCCeEEEeech
Q 029065 41 LKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQI 73 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~-~sl~la~~g~~v~~~D~~ 73 (199)
.++++|+=+|+|. |. .+..++..|++|+++|..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999886 32 334444569999999973
No 413
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.84 E-value=10 Score=30.10 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.++++++|=.|+..|+ ++..++..|++|+++|..+. +.....+... ...+.....|..+.+..
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 72 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVTAL-------------GRRFLSLTADLRKIDGI 72 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhc-------------CCeEEEEECCCCCHHHH
Confidence 3678999999987664 44555567999999886332 1111222211 12456667777654322
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|+++.+.-+
T Consensus 73 ~~~~~~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 73 PALLERAVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112478998866543
No 414
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.78 E-value=13 Score=29.49 Aligned_cols=83 Identities=22% Similarity=0.258 Sum_probs=49.1
Q ss_pred CCCCCCcEEEeCC-CcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 39 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 39 ~~~~~~~VLdlGc-G~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
...+++++|=.|+ |.|+ +...++..|++|+.+|.. +.++.+...+....- ..++.+..+|+.+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-----------LGRVEAVVCDVTSE 81 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-----------CceEEEEEccCCCH
Confidence 4556889999996 4453 445556679999999863 344444443332100 12566777787655
Q ss_pred cccc-------ccCCCccEEEEeccc
Q 029065 114 DHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
+... ...++.|+++.+..+
T Consensus 82 ~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 82 AQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3211 112578998877654
No 415
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=77.73 E-value=7.4 Score=31.77 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHh
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 86 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~ 86 (199)
....+..|||-.+|+|..++.+...|-.+++.|+ ++.++.+.+.+...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 3456889999999999999999899999999998 55888887777654
No 416
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=77.64 E-value=34 Score=27.23 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=54.5
Q ss_pred CCcEEEeCCCcC----hHHHHHH--hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 43 GKRVIELGAGCG----VAGFGMA--LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 43 ~~~VLdlGcG~G----~~sl~la--~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
-+.++|..|+.| .+++.+| .-|.+++++-.. ..+...++.+...+. .+.+++...+- .+.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvvg~~--~e~ 108 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVVGEA--PEE 108 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEecCC--HHH
Confidence 468999977543 2333333 238888888653 355555665554442 22345554221 111
Q ss_pred ccccCCCccEEEEeccccCCcChH-HHHHHHHHhcCCCcEEEEEEEecC
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS 163 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~-~~l~~l~~~l~~~g~i~i~~~~~~ 163 (199)
.-..-...|+++... ...+.. .+++.+. ++|.|.+++++....
T Consensus 109 ~~~~~~~iDF~vVDc---~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDC---KREDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHhhccCCCEEEEeC---CchhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 112234688887642 123333 4444433 567788888877533
No 417
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=77.47 E-value=8.2 Score=30.73 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=42.7
Q ss_pred cEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc---
Q 029065 45 RVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 117 (199)
Q Consensus 45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 117 (199)
+||=.|++.|+ ++..++..|++|++++.+ +.++.+...+... ..+.+..+|+.+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~Dv~d~~~~~~~~ 67 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--------------GEVYAVKADLSDKDDLKNLV 67 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------------CCceEEEcCCCCHHHHHHHH
Confidence 57778877664 445556679999999874 3444443333221 14566677776543211
Q ss_pred ----ccCCCccEEEEecc
Q 029065 118 ----AVAPPFDYIIGTDV 131 (199)
Q Consensus 118 ----~~~~~fD~Ii~~~~ 131 (199)
...++.|++|.+.-
T Consensus 68 ~~~~~~~g~id~li~naG 85 (259)
T PRK08340 68 KEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 11257899887643
No 418
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.32 E-value=13 Score=29.65 Aligned_cols=78 Identities=26% Similarity=0.242 Sum_probs=46.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++++|=.|++.|+ +...++..|++|++++.+ +-++.....+ .. ..++.+...|..+....
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~-------------~~~~~~~~~D~~d~~~~ 68 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY-------------PGRHRWVVADLTSEAGR 68 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc-------------CCceEEEEccCCCHHHH
Confidence 357789999987654 445556679999999874 3444333322 11 22567777787655421
Q ss_pred cc------cCCCccEEEEeccc
Q 029065 117 KA------VAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~~------~~~~fD~Ii~~~~~ 132 (199)
.. ..+..|+++.+...
T Consensus 69 ~~~~~~~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 69 EAVLARAREMGGINVLINNAGV 90 (263)
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 10 02568998877543
No 419
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=77.14 E-value=18 Score=32.15 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=57.3
Q ss_pred CCCCcEEEeCCCcChH--HHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVA--GFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~--sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
+....++|+|.|.|.- .+.....+. .++.+|.+. ++.+...+... +.. ...+......+.+...
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~----------~g~~~v~~~~~~r~~~ 267 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH----------IGEPIVRKLVFHRQRL 267 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh----------cCchhccccchhcccC
Confidence 4556888999987752 222333332 389999855 76666555433 211 1122222212221111
Q ss_pred ccccCCCccEEEEeccccCCc---ChHHHHHHHHHh-cCCCcEEEEEEEe
Q 029065 116 IKAVAPPFDYIIGTDVVYAEH---LLEPLLQTIFAL-SGPKTTILLGYEI 161 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~---~~~~~l~~l~~~-l~~~g~i~i~~~~ 161 (199)
.......||+|+++..+++.. ....+.+.+.+. .++|+.+++..+.
T Consensus 268 pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 268 PIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred CCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 122345699999998887733 233334444433 4566665555543
No 420
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=77.10 E-value=14 Score=31.08 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeec
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQ 72 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~ 72 (199)
.|.+||=+|+|. |...+.+|+. |++|++++.
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 577888888764 6666667754 888877765
No 421
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.71 E-value=11 Score=30.00 Aligned_cols=79 Identities=10% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhC-CeEEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLG-CNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g-~~v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.+++||=.|++.|+ +...++..| ++|++++.+ + .++.+.+.+...+ ..++.+..+|..+...
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~v~~~~~D~~~~~~ 74 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------------ASSVEVIDFDALDTDS 74 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------------CCceEEEEecCCChHH
Confidence 45789999997664 233334454 789998863 2 2554444443322 2257778888866542
Q ss_pred c----c--ccCCCccEEEEeccc
Q 029065 116 I----K--AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~----~--~~~~~fD~Ii~~~~~ 132 (199)
. . ...+..|+++.+...
T Consensus 75 ~~~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 75 HPKVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHHHhcCCCCEEEEeeec
Confidence 1 1 012579988765433
No 422
>PRK08226 short chain dehydrogenase; Provisional
Probab=76.51 E-value=15 Score=29.13 Aligned_cols=78 Identities=22% Similarity=0.167 Sum_probs=45.4
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|+..|+ +...++..|++|++++.+. ..+.+.. +... ..++.+...|+.+....
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~-------------~~~~~~~~~Dl~~~~~v 69 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGR-------------GHRCTAVVADVRDPASV 69 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHh-------------CCceEEEECCCCCHHHH
Confidence 567899988886653 3444455699999998743 3222222 2111 12456677787665422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|+++.+..+
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 70 AAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112468998876554
No 423
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=76.30 E-value=17 Score=33.30 Aligned_cols=87 Identities=18% Similarity=0.151 Sum_probs=46.0
Q ss_pred CCCCCCcEEEeCCCcChHHHHH----HhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 39 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~l----a~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
...+|++||=.|+. |.+|..+ +..|.+|++++.+ +-+......+....+... ......++.+..+|+.+.
T Consensus 76 ~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~----Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 76 DTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVE----GTQPVEKLEIVECDLEKP 150 (576)
T ss_pred ccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccc----cccccCceEEEEecCCCH
Confidence 44467888888874 3344444 4558899988763 333332222221110000 000013577888888765
Q ss_pred ccccccCCCccEEEEec
Q 029065 114 DHIKAVAPPFDYIIGTD 130 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~ 130 (199)
+.....-+..|+||.+-
T Consensus 151 esI~~aLggiDiVVn~A 167 (576)
T PLN03209 151 DQIGPALGNASVVICCI 167 (576)
T ss_pred HHHHHHhcCCCEEEEcc
Confidence 54333335789988763
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=76.29 E-value=20 Score=31.56 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=66.5
Q ss_pred CCcEEEeCC-CcC------hHHHHHHhhCCe--EEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065 43 GKRVIELGA-GCG------VAGFGMALLGCN--VITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 111 (199)
Q Consensus 43 ~~~VLdlGc-G~G------~~sl~la~~g~~--v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 111 (199)
...||=+|= |+| =++.++.+.|.+ +++.|. +.++++.+.....-+. .+...+-+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v---------------~~f~~~~~ 164 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV---------------PFFGSGTE 164 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC---------------ceecCCCC
Confidence 457888876 666 355556666776 788896 6699999888766643 22221111
Q ss_pred CCcc-------ccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065 112 NEDH-------IKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRSTS 165 (199)
Q Consensus 112 ~~~~-------~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~ 165 (199)
.... ...-...||+||..-.-.+ .+.+-.=+..++..++|.-++++.+.--..+
T Consensus 165 ~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 165 KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 1100 0112457999998644333 3344445677788899999999988754443
No 425
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.18 E-value=8.9 Score=30.11 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.||..|+ +...++..|++|++++.+ +.++.....+. . ..++....+|+.+....
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-------------~~~~~~~~~D~~~~~~~ 68 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A-------------GGRAFARQGDVGSAEAV 68 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c-------------CCeEEEEEcCCCCHHHH
Confidence 468899999996553 334455568999999863 23333332222 1 12467777888765422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-+++|+|+.+...
T Consensus 69 ~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 69 EALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 012478998876543
No 426
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.07 E-value=35 Score=26.58 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=23.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI 73 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~ 73 (199)
+++++||=.|++.|+ +...++..|++|++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 467889988886654 444455679999999864
No 427
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.82 E-value=18 Score=28.79 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCCCCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065 38 PSKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 111 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 111 (199)
...++++.+|=.|+++ |+ ++..++..|++|+.++.++ ..+.+++.....+ ...+..+|..
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--------------~~~~~~~D~~ 70 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--------------APIFLPLDVR 70 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--------------cceEEecCcC
Confidence 3456789999999864 42 4455556799998888643 3222222211111 2235566766
Q ss_pred CCcccc-------ccCCCccEEEEeccc
Q 029065 112 NEDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 112 ~~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
+.+... ..-++.|+++.+.-+
T Consensus 71 ~~~~v~~~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 71 EPGQLEAVFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence 553221 112578999877543
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=75.76 E-value=38 Score=27.33 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=41.3
Q ss_pred CcEEEeCCCcChHHHHHHh---hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--
Q 029065 44 KRVIELGAGCGVAGFGMAL---LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-- 117 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~---~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-- 117 (199)
+.+|=-|+| | +|..+++ .|++|+++|.+ +.++.+...+... ..++.+..+|+.+.+...
T Consensus 3 k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~i~~~ 67 (275)
T PRK06940 3 EVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA-------------GFDVSTQEVDVSSRESVKAL 67 (275)
T ss_pred CEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHHHH
Confidence 455655653 4 4555553 48889999873 3333333333221 124667778886654211
Q ss_pred ----ccCCCccEEEEecccc
Q 029065 118 ----AVAPPFDYIIGTDVVY 133 (199)
Q Consensus 118 ----~~~~~fD~Ii~~~~~~ 133 (199)
...++.|+++.+.-+.
T Consensus 68 ~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 68 AATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 1125789998776543
No 429
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.68 E-value=20 Score=28.67 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=44.0
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|+++|. .+-++.....+... ...+.+..+|+.+....
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~i 73 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-------------GPEGLGVSADVRDYAAV 73 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEECCCCCHHHH
Confidence 568899999975443 34445566999999986 33333332222221 12456667777654321
Q ss_pred c-------ccCCCccEEEEec
Q 029065 117 K-------AVAPPFDYIIGTD 130 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~ 130 (199)
. ...++.|+++.+.
T Consensus 74 ~~~~~~~~~~~~~iD~vi~~a 94 (264)
T PRK07576 74 EAAFAQIADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHHHHHHHcCCCCEEEECC
Confidence 1 1124689988664
No 430
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.40 E-value=18 Score=28.33 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=42.0
Q ss_pred CcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc--
Q 029065 44 KRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 116 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-- 116 (199)
++||=.|+..| +|..++ ..|.+|++++.+ +..+.+...+... ..++.+..+|+.+.+..
T Consensus 2 ~~vlItGa~g~-lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (255)
T TIGR01963 2 KTALVTGAASG-IGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD 67 (255)
T ss_pred CEEEEcCCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence 56777775443 344444 458899999873 3333333322222 12567777888765411
Q ss_pred -----cccCCCccEEEEeccc
Q 029065 117 -----KAVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 -----~~~~~~fD~Ii~~~~~ 132 (199)
....++.|+|+.+...
T Consensus 68 ~~~~~~~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 68 MIAAAAAEFGGLDILVNNAGI 88 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 1123468988876543
No 431
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.18 E-value=4.7 Score=28.82 Aligned_cols=87 Identities=20% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCcEEEeCCCcC-hHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 43 GKRVIELGAGCG-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 43 ~~~VLdlGcG~G-~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
..+|.|+|-|-= -.+-.++++|..|+++|+++- +. .+.+++..-|+.+.+..-. .
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a----------------~~g~~~v~DDitnP~~~iY--~ 69 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TA----------------PEGLRFVVDDITNPNISIY--E 69 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cC----------------cccceEEEccCCCccHHHh--h
Confidence 458999999974 477888889999999998552 11 1245677766665432111 2
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCC-CcEEEEEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY 159 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~-~g~i~i~~ 159 (199)
.-|+|.+ -.-+..+...+.++.+. |..+||..
T Consensus 70 ~A~lIYS------iRpppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 70 GADLIYS------IRPPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred Cccceee------cCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3455544 34455666666655543 33345443
No 432
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.65 E-value=7.1 Score=32.62 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=25.8
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLK 80 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~ 80 (199)
++.+||=.|+|. |...+.+|+. |.. |+++|.++ -++.++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 577888888764 6666666654 774 88898743 444443
No 433
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=74.57 E-value=9.7 Score=29.96 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-------ccC-CCccEE
Q 029065 56 AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVA-PPFDYI 126 (199)
Q Consensus 56 ~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-------~~~-~~fD~I 126 (199)
++..+++.|++|+.+|.+ +.++.....+.... ...+..+|..+.+... ... ++.|++
T Consensus 12 ia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 12 IARALAEEGANVILTDRNEEKLADALEELAKEY--------------GAEVIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp HHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT--------------TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred HHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc--------------CCceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 556666779999999974 34333333333321 1134777776553221 112 789988
Q ss_pred EEecc
Q 029065 127 IGTDV 131 (199)
Q Consensus 127 i~~~~ 131 (199)
|.+..
T Consensus 78 V~~a~ 82 (241)
T PF13561_consen 78 VNNAG 82 (241)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 86643
No 434
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.52 E-value=6.3 Score=34.50 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=53.9
Q ss_pred CCCCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 39 SKLKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+.|++|+=+|+|. |......+ ..|++|+.+|.++ -+..|+. .+. ... +.. +
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~---------------~~~--~~~--e- 253 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGY---------------EVM--TME--E- 253 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCC---------------EEc--cHH--H-
Confidence 356899999999997 76555555 4589999999744 3333332 221 111 111 1
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHH-HHHhcCCCcEEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQT-IFALSGPKTTILLGYE 160 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~-l~~~l~~~g~i~i~~~ 160 (199)
.-...|+|+... ....++.. ..+.+++||.+.....
T Consensus 254 ---~v~~aDVVI~at------G~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 254 ---AVKEGDIFVTTT------GNKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ---HHcCCCEEEECC------CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence 113579888642 22344544 4788999998766653
No 435
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.41 E-value=3.8 Score=34.38 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=39.1
Q ss_pred CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
++..++|.--|.|-.+..+... +.+|+++|. +++++.+++++... .+++.+.+.++.+.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------------~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------------DDRFIFIHGNFSNL 81 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------------CTTEEEEES-GGGH
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------------cceEEEEeccHHHH
Confidence 4568999999999878777754 567999998 55988887765432 23566666555443
No 436
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=74.23 E-value=48 Score=27.72 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=42.5
Q ss_pred CCCCCcEEEeCCCcChHHHHHHh----hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 40 KLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
...+++||=.|+ +|.+|..+++ .|.+|++++.+ .-.......... ...+.+...|+.+..
T Consensus 7 ~~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~ 71 (353)
T PLN02896 7 ESATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE--------------GDRLRLFRADLQEEG 71 (353)
T ss_pred ccCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc--------------CCeEEEEECCCCCHH
Confidence 345788998874 5666666664 58899988753 211111111100 125677777876554
Q ss_pred cccccCCCccEEEEecc
Q 029065 115 HIKAVAPPFDYIIGTDV 131 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~ 131 (199)
........+|+|+-...
T Consensus 72 ~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 72 SFDEAVKGCDGVFHVAA 88 (353)
T ss_pred HHHHHHcCCCEEEECCc
Confidence 33222235788765543
No 437
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.12 E-value=15 Score=29.09 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=44.7
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..+++++|=.|++.|+ +...++..|++|++++.+ +.++...... .. . ++.+...|+.+...
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~------------~-~~~~~~~D~~~~~~ 72 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARL--PG------------A-KVTATVADVADPAQ 72 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--hc------------C-ceEEEEccCCCHHH
Confidence 3578899999986553 333344558999999863 3333222211 11 1 45667777765542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...+++|+|+.+...
T Consensus 73 ~~~~~~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 73 VERVFDTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112478999876543
No 438
>PRK08643 acetoin reductase; Validated
Probab=73.97 E-value=22 Score=28.03 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=44.5
Q ss_pred CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065 43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 117 (199)
Q Consensus 43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 117 (199)
++++|=.|+..|+ +...++..|++|++++.+ +.++.+...+... ...+.+..+|+.+.+...
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~~ 68 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD-------------GGKAIAVKADVSDRDQVFA 68 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHHHH
Confidence 5678877876553 344455669999999863 3444333333222 124666778887654211
Q ss_pred ------ccCCCccEEEEeccc
Q 029065 118 ------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 ------~~~~~fD~Ii~~~~~ 132 (199)
...++.|+++.+...
T Consensus 69 ~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 69 AVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 112468998876543
No 439
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=73.95 E-value=40 Score=27.42 Aligned_cols=97 Identities=28% Similarity=0.337 Sum_probs=53.0
Q ss_pred cEEEeCCCc-C-hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 45 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 45 ~VLdlGcG~-G-~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
+|+=+|+|. | .++..++..|.+|+.++. .+.++..++ ++..+. ..... ... ........ ..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~-~~~--~~~~~~~~-~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEIT-VPV--LAADDPAE-LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCcee-ecc--cCCCChhH-cC
Confidence 477788875 3 466666777889999987 444333322 222100 00000 000 00011111 26
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.+|+|+..-.- .....++..+...+.++..+++...
T Consensus 66 ~~d~vila~k~---~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 66 PQDLVILAVKA---YQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred CCCEEEEeccc---ccHHHHHHHHhhhcCCCCEEEEecC
Confidence 79998876432 3567888888888887766554443
No 440
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.82 E-value=19 Score=28.18 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|+..|+ ++..++..|++|++++.+ +.++.....+... ...+.....|+.+....
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 70 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD-------------GGTAIAVQVDVSDPDSA 70 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHHH
Confidence 467889988864442 344444569999999863 3333333322221 12455667777655321
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...+..|+||.+..+
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 71 KAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468999877654
No 441
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.74 E-value=29 Score=29.21 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=57.0
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
+.....++.++=-|+=+|. .+..+|.+|++|+..-.+ +..+.+.+.+.... ....+.+.++|+.+
T Consensus 29 ~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~-----------~~~~i~~~~lDLss 97 (314)
T KOG1208|consen 29 HGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK-----------ANQKIRVIQLDLSS 97 (314)
T ss_pred ccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-----------CCCceEEEECCCCC
Confidence 4556678889999985553 667788889998888653 34444555444421 14578889999876
Q ss_pred Cccc-------cccCCCccEEEEeccccC
Q 029065 113 EDHI-------KAVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 113 ~~~~-------~~~~~~fD~Ii~~~~~~~ 134 (199)
.... .....+.|+.|.|.-++.
T Consensus 98 l~SV~~fa~~~~~~~~~ldvLInNAGV~~ 126 (314)
T KOG1208|consen 98 LKSVRKFAEEFKKKEGPLDVLINNAGVMA 126 (314)
T ss_pred HHHHHHHHHHHHhcCCCccEEEeCccccc
Confidence 6421 122468999988755544
No 442
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=73.66 E-value=8.5 Score=32.39 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCcEEEeCCC--cChHHHHHHhh-CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065 43 GKRVIELGAG--CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 118 (199)
Q Consensus 43 ~~~VLdlGcG--~G~~sl~la~~-g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 118 (199)
|.+||=.|+. .|..++.+|+. |++++++-. ++-.+.++ ..+.. .-+.+...||...-....
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd-----------~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK----ELGAD-----------HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH----hcCCC-----------EEEcCCcccHHHHHHHHc
Confidence 8899999964 46788888865 667666654 33222222 22211 122333333322111111
Q ss_pred cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
....+|+|+-. .-.+.+......|+++|.++....
T Consensus 208 ~g~gvDvv~D~-------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDT-------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEEC-------CCHHHHHHHHHHhccCCEEEEEec
Confidence 12369998864 333555666777788787655433
No 443
>PRK06197 short chain dehydrogenase; Provisional
Probab=73.65 E-value=29 Score=28.43 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
...++++||=.|+..|+ ++..++..|++|++++. .+..+.+...+.... ....+.+..+|+.+..
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-----------PGADVTLQELDLTSLA 80 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCHH
Confidence 34578899988875553 33444556899888875 333333333332210 0125677778876654
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ...++.|++|.+..+
T Consensus 81 ~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 81 SVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCcc
Confidence 221 112468999877544
No 444
>PRK08628 short chain dehydrogenase; Provisional
Probab=73.54 E-value=21 Score=28.21 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.++++++|=.|++.|+ ++..++..|++|++++.+. ..+.. ..+... ..++.+...|+.+.+.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~-------------~~~~~~~~~D~~~~~~ 69 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRAL-------------QPRAEFVQVDLTDDAQ 69 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhc-------------CCceEEEEccCCCHHH
Confidence 3678899999986553 4445556799988887633 33222 222211 2256777888876542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...++.|+|+.+...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 70 CRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECCcc
Confidence 21 112468998877543
No 445
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.17 E-value=18 Score=26.37 Aligned_cols=78 Identities=24% Similarity=0.306 Sum_probs=46.7
Q ss_pred CcEEEeCCCcCh---HHHHHHhhCCe-EEEeech---hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 44 KRVIELGAGCGV---AGFGMALLGCN-VITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 44 ~~VLdlGcG~G~---~sl~la~~g~~-v~~~D~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
|+||=.|++.|+ ++..+++.|+. |+.+..+ +..+.....+... ..++.+..+|..+.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-------------~~~~~~~~~D~~~~~~~ 67 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-------------GAKITFIECDLSDPESI 67 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-------------TSEEEEEESETTSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-------------ccccccccccccccccc
Confidence 467778887764 45555566775 6666654 3333333333322 24778888887655422
Q ss_pred -------cccCCCccEEEEeccccC
Q 029065 117 -------KAVAPPFDYIIGTDVVYA 134 (199)
Q Consensus 117 -------~~~~~~fD~Ii~~~~~~~ 134 (199)
....++.|++|.+..+..
T Consensus 68 ~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 68 RALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccccccccc
Confidence 122468999998866655
No 446
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.15 E-value=14 Score=29.43 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=43.4
Q ss_pred CCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeech---hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 41 LKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 41 ~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
++++++|=.|+| .|+ ++..+++.|++|+.++.+ +.++.+...+ + ..+.+..+|+.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~ 68 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P-------------EPAPVLELDVTN 68 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C-------------CCCcEEeCCCCC
Confidence 578899999983 342 444455679999998753 2222222111 1 134556677765
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.+... ...++.|++|.+.-+
T Consensus 69 ~~~i~~~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 69 EEHLASLADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEcccc
Confidence 54211 112579998877544
No 447
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=73.02 E-value=18 Score=30.03 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred CcEEEeCCCc--ChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065 44 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 121 (199)
Q Consensus 44 ~~VLdlGcG~--G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 121 (199)
.+|+=+|+|. |.++..++..|..|+.+.... .+. +..++..+.. + .............. .....
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~--~----~~~~~~~~~~~~~~---~~~~~ 71 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDS--V----HGDFHLPPVQAYRS---AEDMP 71 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEe--C----CCCeeecCceEEcc---hhhcC
Confidence 5788899986 467888888899888887643 121 2233321100 0 00111100011100 11235
Q ss_pred CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
.||+|+..-..+ ....++..+..++++++.++...
T Consensus 72 ~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 72 PCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEec
Confidence 799998764433 34578888888888888755443
No 448
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=72.95 E-value=23 Score=27.75 Aligned_cols=78 Identities=23% Similarity=0.286 Sum_probs=44.8
Q ss_pred CCCCcEEEeCCCcChHHHHHH----hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.++++||=.|+. |.+|..++ ..|.+|++++. ++.++.....+... ..++....+|+.+.+.
T Consensus 2 ~~~~~vlItG~s-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~ 67 (258)
T PRK12429 2 LKGKVALVTGAA-SGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-------------GGKAIGVAMDVTDEEA 67 (258)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence 356788877764 44455544 45889999986 33444333333222 2356777788875543
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ...+..|+||.+...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112468998876543
No 449
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.86 E-value=27 Score=28.84 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++.+||-.|||. |...+.+++ .|. +|++++.++ ..+.++. . +.. ..+.....++ ....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~-----------~vi~~~~~~~---~~~~ 226 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD-----------ETVNLARDPL---AAYA 226 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC-----------EEEcCCchhh---hhhh
Confidence 678899988864 555555564 487 688888643 4443322 1 110 0011000001 0111
Q ss_pred ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
...+.+|+++..-. -...++...+.|+++|.++..
T Consensus 227 ~~~~~vd~vld~~g------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 227 ADKGDFDVVFEASG------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred ccCCCccEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 11245899886421 124566777888888887653
No 450
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.49 E-value=49 Score=26.59 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=44.4
Q ss_pred CCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 41 LKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 41 ~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
++++++|=.|++. |+ ++..+++.|++|+.++.+. ..+.+. .+... .....+..+|..+.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~-~~~~~-------------~~~~~~~~~Dl~~~~ 69 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE-EFAAQ-------------LGSDIVLPCDVAEDA 69 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHH-HHHhc-------------cCCceEeecCCCCHH
Confidence 4688999999865 42 5666667799988887543 212221 11111 112345667776553
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ..-+++|++|.+.-+
T Consensus 70 ~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 70 SIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCcc
Confidence 221 112578999877644
No 451
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=72.48 E-value=26 Score=25.34 Aligned_cols=102 Identities=22% Similarity=0.175 Sum_probs=52.0
Q ss_pred EEEeCCCc-C-hHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCc
Q 029065 46 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 123 (199)
Q Consensus 46 VLdlGcG~-G-~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 123 (199)
|+=+|+|. | +++-.|++.|.+|+.++-..-++. +..++..++.. ..+........+... ......|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGP-----DGDETVQPPIVISAP---SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEET-----TEEEEEEEEEEESSH---GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEec-----ccceecccccccCcc---hhccCCC
Confidence 34466664 3 345555566889999986542222 23333211100 000000111111100 1235689
Q ss_pred cEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065 124 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162 (199)
Q Consensus 124 D~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~ 162 (199)
|+|+..-- ......+++.+..++.+++.+++....-
T Consensus 69 D~viv~vK---a~~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 69 DLVIVAVK---AYQLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp SEEEE-SS---GGGHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred cEEEEEec---ccchHHHHHHHhhccCCCcEEEEEeCCC
Confidence 99987622 2356778888999999997666554443
No 452
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.45 E-value=11 Score=30.88 Aligned_cols=40 Identities=35% Similarity=0.432 Sum_probs=28.4
Q ss_pred CcEEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHH
Q 029065 44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNV 83 (199)
Q Consensus 44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~ 83 (199)
++|.=||+|. | .++..++..|.+|++.|.+ +.++.++..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 3577788885 3 3566667778899999984 4777776554
No 453
>PRK06196 oxidoreductase; Provisional
Probab=72.06 E-value=19 Score=29.74 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=44.4
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
...++++||=.|++.|+ +...++..|++|++++.+ +.++.+...+ . .+.+..+|+.+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l--~---------------~v~~~~~Dl~d~~ 84 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI--D---------------GVEVVMLDLADLE 84 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--h---------------hCeEEEccCCCHH
Confidence 34578899999976553 333444568999999863 3322222211 1 2456667776553
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ...++.|++|.+..+
T Consensus 85 ~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 85 SVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCC
Confidence 211 112578999877544
No 454
>PRK07677 short chain dehydrogenase; Provisional
Probab=72.06 E-value=25 Score=27.70 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065 43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 117 (199)
Q Consensus 43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 117 (199)
|+++|=.|++.|+ +...++..|++|++++.+. .++.+...+... ...+.+..+|..+.....
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~ 67 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF-------------PGQVLTVQMDVRNPEDVQK 67 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHHHH
Confidence 4688888887664 4444556699999998633 344333333221 125677777876543211
Q ss_pred ------ccCCCccEEEEec
Q 029065 118 ------AVAPPFDYIIGTD 130 (199)
Q Consensus 118 ------~~~~~fD~Ii~~~ 130 (199)
..-++.|+++.+.
T Consensus 68 ~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 68 MVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHhCCccEEEECC
Confidence 0124689988664
No 455
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=71.97 E-value=48 Score=29.17 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=26.9
Q ss_pred CCCCCCcEEEeCCC-cChH--HHHHHhhCCeEEEeech
Q 029065 39 SKLKGKRVIELGAG-CGVA--GFGMALLGCNVITTDQI 73 (199)
Q Consensus 39 ~~~~~~~VLdlGcG-~G~~--sl~la~~g~~v~~~D~~ 73 (199)
...++++|+=+|-| +|+- +..|...|++|++.|..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCC
Confidence 45567888888886 6764 56777889999999973
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=71.94 E-value=71 Score=28.27 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
...++.+|=.|++.|+ ++..++..|++|++++.+ +.++.+...+ + ........|+.+.+.
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~D~~~~~~ 329 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G-------------DEHLSVQADITDEAA 329 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceeEEEccCCCHHH
Confidence 4468899999987764 455556679999999873 3333332221 1 134455667765532
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ..-++.|++|.+.-+
T Consensus 330 ~~~~~~~~~~~~g~id~li~nAg~ 353 (520)
T PRK06484 330 VESAFAQIQARWGRLDVLVNNAGI 353 (520)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112578999876543
No 457
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.81 E-value=27 Score=30.48 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI 73 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~ 73 (199)
.+++++|=.|+..|+ +...++..|++|+++|.+
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~ 243 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP 243 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999986553 444555679999999864
No 458
>PRK12367 short chain dehydrogenase; Provisional
Probab=71.67 E-value=9.4 Score=30.53 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=44.8
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
.+..++++++|=.|++.|+ +...++..|++|++++.+.. +..... ... ......+|..+.
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~-~~~~~~--~~~--------------~~~~~~~D~~~~ 70 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKI-NNSESN--DES--------------PNEWIKWECGKE 70 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCch-hhhhhh--ccC--------------CCeEEEeeCCCH
Confidence 3455678999999987764 34445567999998886321 111110 010 113445666554
Q ss_pred ccccccCCCccEEEEeccc
Q 029065 114 DHIKAVAPPFDYIIGTDVV 132 (199)
Q Consensus 114 ~~~~~~~~~fD~Ii~~~~~ 132 (199)
+.....-++.|++|.+.-+
T Consensus 71 ~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 71 ESLDKQLASLDVLILNHGI 89 (245)
T ss_pred HHHHHhcCCCCEEEECCcc
Confidence 4322223578999877544
No 459
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=71.65 E-value=50 Score=26.97 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=51.1
Q ss_pred cEEEeCCCc-C-hHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065 45 RVIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 122 (199)
Q Consensus 45 ~VLdlGcG~-G-~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 122 (199)
+|+=+|+|. | .++..+++.|.+|+.++..+.++..+ .++..++. + ...... ..... .........
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~--~----~~~~~~-~~~~~--~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRS--D----HGDAVV-PGPVI--TDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEe--C----CCeEEe-cceee--cCHHHccCC
Confidence 467788886 4 46777777788899998633333222 22221100 0 000000 00000 111111357
Q ss_pred ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158 (199)
Q Consensus 123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~ 158 (199)
+|+|+.+-.- .....+++.+...+.++..++..
T Consensus 69 ~d~vilavk~---~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 69 FDLVILAVKA---YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred CCEEEEEecc---cCHHHHHHHHHhhcCCCCEEEEe
Confidence 9988765332 35778888888888877655443
No 460
>PRK08278 short chain dehydrogenase; Provisional
Probab=71.57 E-value=17 Score=29.30 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=45.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-H-------HHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-V-------LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 109 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 109 (199)
.+++++|=.|++.|+ ++..++..|++|++++.+. . ++.+...+... ..++.+..+|
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~D 70 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA-------------GGQALPLVGD 70 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc-------------CCceEEEEec
Confidence 467899989987664 4445556699999888521 1 22222222222 2256777788
Q ss_pred eCCCcccc-------ccCCCccEEEEeccc
Q 029065 110 WGNEDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 110 ~~~~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
+.+.+... ..-++.|+++.+..+
T Consensus 71 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 71 VRDEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 86664221 111478999876543
No 461
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.54 E-value=18 Score=28.24 Aligned_cols=77 Identities=23% Similarity=0.211 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
++++++|=.|+. |.+|..++ ..|++|++++.+ +.++.....+... ..++.+..+|..+...
T Consensus 5 ~~~~~vlVtG~s-g~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~ 70 (239)
T PRK07666 5 LQGKNALITGAG-RGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY-------------GVKVVIATADVSDYEE 70 (239)
T ss_pred CCCCEEEEEcCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-------------CCeEEEEECCCCCHHH
Confidence 456788888864 44455444 458899999863 3333333333222 2256777777765432
Q ss_pred cc-------ccCCCccEEEEecc
Q 029065 116 IK-------AVAPPFDYIIGTDV 131 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~ 131 (199)
.. ...++.|+|+.+..
T Consensus 71 ~~~~~~~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 71 VTAAIEQLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHHHHHHHcCCccEEEEcCc
Confidence 11 11246899887643
No 462
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=71.53 E-value=12 Score=31.01 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeechh
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQIE 74 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~~ 74 (199)
++.+||-.|+|. |...+.+|+. |. .|++++.++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~ 202 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNP 202 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 467888877753 5566666654 75 688887543
No 463
>PRK05875 short chain dehydrogenase; Provisional
Probab=71.17 E-value=18 Score=28.89 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=45.2
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++++|=.|++.|+ ++..++..|++|++++.+ +.++.....+.... ...++.+...|+.+.+..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dl~~~~~~ 73 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK-----------GAGAVRYEPADVTDEDQV 73 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc-----------CCCceEEEEcCCCCHHHH
Confidence 467899999976543 334445568999999863 33332222222110 013567777788665422
Q ss_pred cc-------cCCCccEEEEecc
Q 029065 117 KA-------VAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~~-------~~~~fD~Ii~~~~ 131 (199)
.. ..++.|+++.+..
T Consensus 74 ~~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 74 ARAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 11 1246899886643
No 464
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.11 E-value=7.4 Score=28.24 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=22.7
Q ss_pred CcEEEeCCCc-ChHHHHHHhhCCeEEEeechh
Q 029065 44 KRVIELGAGC-GVAGFGMALLGCNVITTDQIE 74 (199)
Q Consensus 44 ~~VLdlGcG~-G~~sl~la~~g~~v~~~D~~~ 74 (199)
.+|.|+|-|. --.+..|+..|..|+++|+.+
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred CcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4999999997 457888889999999999844
No 465
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=71.08 E-value=31 Score=23.67 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=46.8
Q ss_pred CCcChHHHHHHhh---CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-CCCcc
Q 029065 51 AGCGVAGFGMALL---GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFD 124 (199)
Q Consensus 51 cG~G~~sl~la~~---g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD 124 (199)
||.|..+..+++. +. +|+.+|.+ +..+.++. . .+.+..+|..+.+.+... -...+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~---------------~~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E---------------GVEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T---------------TSEEEES-TTSHHHHHHTTGGCES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c---------------ccccccccchhhhHHhhcCccccC
Confidence 5666667666642 44 79999984 45444432 2 245667777655433221 24688
Q ss_pred EEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
.+++.-. .....-.+-...+-+.|...++....
T Consensus 65 ~vv~~~~---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 65 AVVILTD---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp EEEEESS---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred EEEEccC---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 7776532 12233333344455677777665443
No 466
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.08 E-value=6.9 Score=30.14 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=51.7
Q ss_pred cEEEeCCCc-Ch-HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCC-------CCCCCcEEEEEeeeCCCc
Q 029065 45 RVIELGAGC-GV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPG-------SDLLGSIQAVELDWGNED 114 (199)
Q Consensus 45 ~VLdlGcG~-G~-~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~d~~~~~ 114 (199)
+|-=+|.|- |+ .+..+|..|.+|+++|+++ .++...+ +... ..+|. .....++.+. .|+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~-----g~~p-~~E~~l~~ll~~~~~~~~l~~t-~~~~--- 71 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN-----GELP-IYEPGLDELLKENVSAGRLRAT-TDIE--- 71 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT-----TSSS-S-CTTHHHHHHHHHHTTSEEEE-SEHH---
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh-----cccc-ccccchhhhhccccccccchhh-hhhh---
Confidence 455577775 64 6677788899999999854 4443321 1000 00000 0001233332 1221
Q ss_pred cccccCCCccEEEE-eccccC------CcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065 115 HIKAVAPPFDYIIG-TDVVYA------EHLLEPLLQTIFALSGPKTTILLGYEIRST 164 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~-~~~~~~------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~ 164 (199)
..-...|+++. .++.+. .+.+.++++.+...++++..+++.-.....
T Consensus 72 ---~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG 125 (185)
T PF03721_consen 72 ---EAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG 125 (185)
T ss_dssp ---HHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred ---hhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence 10135677654 444443 234778888889999998777665554433
No 467
>PRK07024 short chain dehydrogenase; Provisional
Probab=70.72 E-value=16 Score=28.96 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065 43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 117 (199)
Q Consensus 43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 117 (199)
+++||=.|+..|+ +...+++.|++|+.+|.+ +.++.....+.. ..++.+..+|+.+.+...
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~i~~ 67 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK--------------AARVSVYAADVRDADALAA 67 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc--------------CCeeEEEEcCCCCHHHHHH
Confidence 3577778876553 444555669999999873 333332222111 115677788887654221
Q ss_pred ------ccCCCccEEEEeccc
Q 029065 118 ------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 ------~~~~~fD~Ii~~~~~ 132 (199)
...+..|+++.+.-.
T Consensus 68 ~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 68 AAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHhCCCCCEEEECCCc
Confidence 112458999877543
No 468
>PRK06182 short chain dehydrogenase; Validated
Probab=70.53 E-value=41 Score=26.84 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=41.1
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++||=.|++.|+ ++..++..|++|++++.+. .++.. ... .+.+..+|..+.+...
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~----~~~---------------~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL----ASL---------------GVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HhC---------------CCeEEEeeCCCHHHHH
Confidence 36788888876553 3333345689999988632 22211 111 2466677776554221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
...+..|++|.+..+
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCc
Confidence 112478999887654
No 469
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.31 E-value=20 Score=29.71 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=57.2
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
.+..+.|+.|+==||-+|. ++..+++.|++++.+-. .+-++...+.+...+. ..++...++|..+
T Consensus 6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~-----------~~~v~~~~~Dvs~ 74 (282)
T KOG1205|consen 6 FMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGS-----------LEKVLVLQLDVSD 74 (282)
T ss_pred cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCC-----------cCccEEEeCccCC
Confidence 4556789999999997764 66777788998777765 3355555444444331 1157888899877
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
.+... ..-+..|+.|.|.-+
T Consensus 75 ~~~~~~~~~~~~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 75 EESVKKFVEWAIRHFGRVDVLVNNAGI 101 (282)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 65322 234689999988655
No 470
>PRK09186 flagellin modification protein A; Provisional
Probab=70.12 E-value=18 Score=28.50 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++||=.|++.|+ +...++..|++|++++.+ +.++.+...+..... ...+.+..+|+.+.+...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~d~~~~~ 71 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-----------SKKLSLVELDITDQESLE 71 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-----------CCceeEEEecCCCHHHHH
Confidence 57889999986553 344455668999999863 344444333322100 124556677877654221
Q ss_pred -------ccCCCccEEEEec
Q 029065 118 -------AVAPPFDYIIGTD 130 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~ 130 (199)
..-++.|++|.+.
T Consensus 72 ~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 72 EFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 1124589988764
No 471
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.97 E-value=8.1 Score=32.41 Aligned_cols=90 Identities=13% Similarity=0.010 Sum_probs=51.3
Q ss_pred CCCCcEEEeCCCc-ChHHHHHHh--hC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 41 LKGKRVIELGAGC-GVAGFGMAL--LG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 41 ~~~~~VLdlGcG~-G~~sl~la~--~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
..|.+||=+|||. |+..+.+++ .| ++|+++|.++ -++.++. .+. .... -++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--------------~~~~-~~~~---- 218 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--------------TYLI-DDIP---- 218 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--------------eeeh-hhhh----
Confidence 3578999999975 777766665 34 4699999743 4455442 110 0000 0111
Q ss_pred ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065 116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 159 (199)
Q Consensus 116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~ 159 (199)
....+|+|+-.- -. ......+....++++++|.+++..
T Consensus 219 ---~~~g~d~viD~~--G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 219 ---EDLAVDHAFECV--GG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred ---hccCCcEEEECC--CC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 012488887431 11 113456777778899999876543
No 472
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=69.80 E-value=28 Score=27.44 Aligned_cols=123 Identities=14% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCcChHHHHHHh----hC--CeEEEeechh-HHH-HHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065 42 KGKRVIELGAGCGVAGFGMAL----LG--CNVITTDQIE-VLP-LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 113 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~----~g--~~v~~~D~~~-~l~-~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 113 (199)
+...|+|+|.-.|--.++.|. .| .+|+++|++- -++ .|++ .+.|.+...+-.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------------------~p~i~f~egss~dp 130 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------------------VPDILFIEGSSTDP 130 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------------------CCCeEEEeCCCCCH
Confidence 567899999977655555553 36 5699999743 222 2222 12567776554443
Q ss_pred ccc---cccCCCc-cEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC---------------hhHHHHHHHHH
Q 029065 114 DHI---KAVAPPF-DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS---------------TSVHEQMLQMW 174 (199)
Q Consensus 114 ~~~---~~~~~~f-D~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~---------------~~~~~~~~~~~ 174 (199)
... ......| -+.++-|.-++....-.-++.+..+|..|..+.+.+.... ....+.|++..
T Consensus 131 ai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 131 AIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 211 1112222 3334446666666666777888888988887766654321 12356677777
Q ss_pred HhCCeEEE
Q 029065 175 KSNFNVKL 182 (199)
Q Consensus 175 ~~~~~v~~ 182 (199)
.++|++..
T Consensus 211 p~~yEiD~ 218 (237)
T COG3510 211 PQDYEIDT 218 (237)
T ss_pred Ccccccch
Confidence 76776643
No 473
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=69.67 E-value=38 Score=28.09 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=25.5
Q ss_pred CCCCCCCcEEEeCCCc-ChHH-HHHHhhCCeEEEeech
Q 029065 38 PSKLKGKRVIELGAGC-GVAG-FGMALLGCNVITTDQI 73 (199)
Q Consensus 38 ~~~~~~~~VLdlGcG~-G~~s-l~la~~g~~v~~~D~~ 73 (199)
+..+.+++|+=||+|. |... ..+...|++|+..|..
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3456789999999985 5433 3333569999999974
No 474
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=69.67 E-value=34 Score=26.74 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=43.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
++++++|=.|++.|+ +...++..|++|++++.+. .... ...+.+...|+.+.+...
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~~~~-------------~~~~~~~~~D~~~~~~~~ 64 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------LTQE-------------DYPFATFVLDVSDAAAVA 64 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------hhhc-------------CCceEEEEecCCCHHHHH
Confidence 568889988887654 3444556699999998643 1111 124666777876554221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
...+++|+++.+...
T Consensus 65 ~~~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 65 QVCQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 112468999877544
No 475
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=69.47 E-value=17 Score=26.31 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCCCCcEEEeCCCc-C-hHHHHHHhhCCe-EEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 40 KLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 40 ~~~~~~VLdlGcG~-G-~~sl~la~~g~~-v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
.+++++||=||+|- | .....++..|++ |+.+.-+ + +-+.+..- .+ ..+.+ ..|.+..
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~-------------~~~~~--~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GG-------------VNIEA--IPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TG-------------CSEEE--EEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cc-------------cccce--eeHHHHH
Confidence 57899999999985 3 344555566877 8888753 2 33333222 11 12333 3443221
Q ss_pred cccccCCCccEEEEeccccCCcChHHH
Q 029065 115 HIKAVAPPFDYIIGTDVVYAEHLLEPL 141 (199)
Q Consensus 115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~ 141 (199)
.....+|+|+.+.+.-........
T Consensus 71 ---~~~~~~DivI~aT~~~~~~i~~~~ 94 (135)
T PF01488_consen 71 ---EALQEADIVINATPSGMPIITEEM 94 (135)
T ss_dssp ---HHHHTESEEEE-SSTTSTSSTHHH
T ss_pred ---HHHhhCCeEEEecCCCCcccCHHH
Confidence 223579999988765444333333
No 476
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=69.45 E-value=15 Score=30.42 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
..+++||=.|+..|+ +...++..|++|++++.+ +-.+.+...+... ...+.+..+|+.+....
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~v 70 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP-------------PDSYTIIHIDLGDLDSV 70 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc-------------CCceEEEEecCCCHHHH
Confidence 357889988876553 334445569999999863 2333332222111 12567777888665421
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|++|.+.-+
T Consensus 71 ~~~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 71 RRFVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHHHHHHhCCCccEEEECCcc
Confidence 1 112468999877544
No 477
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.41 E-value=25 Score=28.41 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeech
Q 029065 41 LKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI 73 (199)
Q Consensus 41 ~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~ 73 (199)
++++.+|=.|++. |+ ++..++..|++|+.++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 5788999999874 53 566666789999988754
No 478
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=69.04 E-value=10 Score=32.29 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=31.5
Q ss_pred CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeech-hHHHHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQI-EVLPLLKR 81 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~-~~l~~a~~ 81 (199)
.|.+|.=+|||. |+..+.-|+. |+. ++++|++ +-+++|++
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 478999999975 9988888865 665 9999984 47777755
No 479
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=68.89 E-value=23 Score=27.10 Aligned_cols=33 Identities=36% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCCCCcEEEeCC-Cc-Ch-HHHHHHhhCCeEEEeec
Q 029065 40 KLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ 72 (199)
Q Consensus 40 ~~~~~~VLdlGc-G~-G~-~sl~la~~g~~v~~~D~ 72 (199)
.+++++++=+|+ |. |. ....++..|++|+.++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 467899999996 43 53 44555667888888875
No 480
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=68.85 E-value=27 Score=27.71 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=44.7
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++++|=.|++.|+ +...++..|++|++++.+. .++.+.... ..++.+...|..+....
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~~~ 67 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF----------------GDHVLVVEGDVTSYADN 67 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------------CCcceEEEccCCCHHHH
Confidence 467899999987664 4445556799999998643 333222211 11355666776654321
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|+++.+..+
T Consensus 68 ~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 68 QRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112468988877544
No 481
>PLN02214 cinnamoyl-CoA reductase
Probab=68.62 E-value=22 Score=29.79 Aligned_cols=79 Identities=20% Similarity=0.105 Sum_probs=43.4
Q ss_pred CCCCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hH-HHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 39 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EV-LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~-l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
...++++||=.|+ +|.+|..++ ..|.+|++++.+ +. .......+... ...+.+...|+.+
T Consensus 6 ~~~~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~d 71 (342)
T PLN02214 6 ASPAGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGG-------------KERLILCKADLQD 71 (342)
T ss_pred ccCCCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCC-------------CCcEEEEecCcCC
Confidence 3456788988876 566666655 348889998752 21 11111111100 1246777778765
Q ss_pred CccccccCCCccEEEEecc
Q 029065 113 EDHIKAVAPPFDYIIGTDV 131 (199)
Q Consensus 113 ~~~~~~~~~~fD~Ii~~~~ 131 (199)
.......-..+|+|+-...
T Consensus 72 ~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 72 YEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred hHHHHHHHhcCCEEEEecC
Confidence 5433222245888865543
No 482
>PRK08251 short chain dehydrogenase; Provisional
Probab=68.61 E-value=34 Score=26.71 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=44.7
Q ss_pred CCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065 43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 117 (199)
Q Consensus 43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~- 117 (199)
++++|=.|+..|+ ++..++..|++|+.++. .+.++.....+..... ..++.+..+|+.+.....
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~~~~ 70 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP-----------GIKVAVAALDVNDHDQVFE 70 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEcCCCCHHHHHH
Confidence 5678888865543 33444456889988886 3344444333322110 225677788887654221
Q ss_pred ------ccCCCccEEEEeccc
Q 029065 118 ------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 ------~~~~~fD~Ii~~~~~ 132 (199)
...++.|+++.+..+
T Consensus 71 ~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 71 VFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 112468998876543
No 483
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=68.57 E-value=21 Score=29.41 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=41.5
Q ss_pred CCCcEEEeCCCcChHHHHHHh----hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++||=.| |+|.+|..+++ .|.+|++++.+. ............+ ...++++...|..+....
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-----------AKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-----------CCCceEEEeCCCCCchHH
Confidence 467888888 45665666553 488887775422 2221111111111 023567777787765433
Q ss_pred cccCCCccEEEEecc
Q 029065 117 KAVAPPFDYIIGTDV 131 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~~ 131 (199)
...-...|+|+-+..
T Consensus 72 ~~~~~~~d~vih~A~ 86 (325)
T PLN02989 72 ELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHcCCCEEEEeCC
Confidence 222235798876544
No 484
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=68.40 E-value=20 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=24.0
Q ss_pred CCCCCcEEEeCCCc-C-hHHHHHHhhCCe-EEEeec
Q 029065 40 KLKGKRVIELGAGC-G-VAGFGMALLGCN-VITTDQ 72 (199)
Q Consensus 40 ~~~~~~VLdlGcG~-G-~~sl~la~~g~~-v~~~D~ 72 (199)
.+++++||=+|||. | -....++..|.. ++.+|.
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 45678999999986 4 355666667775 888874
No 485
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=68.38 E-value=12 Score=30.96 Aligned_cols=37 Identities=35% Similarity=0.552 Sum_probs=24.8
Q ss_pred CcEEEeCC-C-cChHHHHHHhh-CC-eEEEeech-hHHHHHH
Q 029065 44 KRVIELGA-G-CGVAGFGMALL-GC-NVITTDQI-EVLPLLK 80 (199)
Q Consensus 44 ~~VLdlGc-G-~G~~sl~la~~-g~-~v~~~D~~-~~l~~a~ 80 (199)
.+||=.|+ | .|...+.+|+. |+ +|++++.+ +-.+.++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~ 197 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLK 197 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 78988887 3 47777777754 88 69988764 3334443
No 486
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.35 E-value=32 Score=26.82 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=43.9
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
+++++|=.|+..|+ +...++..|.+|++++.+. ..+.....+... ..++.+..+|+.+.+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~ 71 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-------------GVKAAAYSIDLSNPEAIA 71 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-------------CCcEEEEEccCCCHHHHH
Confidence 45788888864332 3344445688999998743 333333322221 225677778887654221
Q ss_pred -------ccCCCccEEEEeccc
Q 029065 118 -------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 -------~~~~~fD~Ii~~~~~ 132 (199)
..-++.|+++.+...
T Consensus 72 ~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 72 PGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHcCCCCEEEECCCc
Confidence 012468999876544
No 487
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=68.34 E-value=54 Score=25.49 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=26.4
Q ss_pred CCCCCcEEEeCCCc-C-hHHHHHHhhCC-eEEEeech
Q 029065 40 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 73 (199)
Q Consensus 40 ~~~~~~VLdlGcG~-G-~~sl~la~~g~-~v~~~D~~ 73 (199)
.++.++|+=+|||. | .++..+++.|. +++.+|..
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35678999999985 5 47788888887 49999853
No 488
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=68.13 E-value=6.6 Score=36.96 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=33.6
Q ss_pred CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHH
Q 029065 41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKR 81 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~ 81 (199)
+++..+||=.+|-|.+.+.+.++|..|+++|++. +.-..+.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKa 130 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKA 130 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHH
Confidence 4678999999999999999999999999999843 4333333
No 489
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.12 E-value=58 Score=25.68 Aligned_cols=79 Identities=19% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h----hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I----EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~----~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
+++++||=.|++.|+ ++..++..|++|+.++. + +..+.....+... ..++.+..+|+.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~ 72 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA-------------GAKAVAFQADLTT 72 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh-------------CCcEEEEecCcCC
Confidence 567899999976653 33344455888666653 1 1222222222211 1256777888876
Q ss_pred Ccccc-------ccCCCccEEEEeccc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~~ 132 (199)
..... ...++.|+++.+.-.
T Consensus 73 ~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 73 AAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 54321 112468998876544
No 490
>PRK06841 short chain dehydrogenase; Provisional
Probab=68.06 E-value=20 Score=28.26 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=44.5
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
+++++||=.|++.|+ ++..++..|++|++++.+. ..+.+.. .. ...+.....|..+.+..
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dl~~~~~~ 76 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQ---LL-------------GGNAKGLVCDVSDSQSV 76 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hh-------------CCceEEEEecCCCHHHH
Confidence 568899999987654 4455566799999998643 2221111 11 12455667777655422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ..-++.|+++.+...
T Consensus 77 ~~~~~~~~~~~~~~d~vi~~ag~ 99 (255)
T PRK06841 77 EAAVAAVISAFGRIDILVNSAGV 99 (255)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468998876544
No 491
>PRK05599 hypothetical protein; Provisional
Probab=68.01 E-value=29 Score=27.45 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=43.3
Q ss_pred cEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc---
Q 029065 45 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 117 (199)
Q Consensus 45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--- 117 (199)
++|=.|++.|+ ++..++ .|++|+.++. .+-++.+...+...+ ...+.+..+|..+.+...
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~~v~~~~ 68 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRG------------ATSVHVLSFDAQDLDTHRELV 68 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc------------CCceEEEEcccCCHHHHHHHH
Confidence 57777887765 334444 3888888886 334444444443322 123566777876654221
Q ss_pred ----ccCCCccEEEEecccc
Q 029065 118 ----AVAPPFDYIIGTDVVY 133 (199)
Q Consensus 118 ----~~~~~fD~Ii~~~~~~ 133 (199)
...++.|+++.+.-+.
T Consensus 69 ~~~~~~~g~id~lv~nag~~ 88 (246)
T PRK05599 69 KQTQELAGEISLAVVAFGIL 88 (246)
T ss_pred HHHHHhcCCCCEEEEecCcC
Confidence 1125789988765443
No 492
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.90 E-value=23 Score=27.86 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
.+++++|=.|+..|+ +...++..|++|++++.++ ..+.+...+... ..++.+...|+.+....
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~ 71 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA-------------GGKAIGVAMDVTNEDAV 71 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc-------------CceEEEEECCCCCHHHH
Confidence 467889977775442 3444556699999998733 444443333222 12456677777655422
Q ss_pred c-------ccCCCccEEEEeccc
Q 029065 117 K-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 117 ~-------~~~~~fD~Ii~~~~~ 132 (199)
. ...++.|++|.+...
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 72 NAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCcc
Confidence 1 112468988776544
No 493
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.84 E-value=40 Score=30.94 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=50.5
Q ss_pred CcEEEeCCCc-Ch-HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065 44 KRVIELGAGC-GV-AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV- 119 (199)
Q Consensus 44 ~~VLdlGcG~-G~-~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~- 119 (199)
.+|+=+|+|. |. .+..+...|..|+.+|.+ +.++.+++ .+ ..+...|..+.+.+...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---------------~~v~~GDat~~~~L~~ag 461 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---------------YKVYYGDATQLELLRAAG 461 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---------------CeEEEeeCCCHHHHHhcC
Confidence 3566666654 43 333344557889999984 46665543 22 35566777655543322
Q ss_pred CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065 120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160 (199)
Q Consensus 120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~ 160 (199)
-.+.|.+++.-. +...-..+... .+.+.|+..++....
T Consensus 462 i~~A~~vv~~~~--d~~~n~~i~~~-~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 462 AEKAEAIVITCN--EPEDTMKIVEL-CQQHFPHLHILARAR 499 (601)
T ss_pred CccCCEEEEEeC--CHHHHHHHHHH-HHHHCCCCeEEEEeC
Confidence 246888776521 11122222333 344677777666443
No 494
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=67.69 E-value=21 Score=29.25 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=40.5
Q ss_pred CCCcEEEeCCCcChHHHHHHh----hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065 42 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 116 (199)
Q Consensus 42 ~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 116 (199)
++++||=.|+ +|.+|..+++ .|.+|++++.+. ............+ ...++++...|+.+....
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Dl~~~~~~ 70 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG-----------AKERLHLFKANLLEEGSF 70 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC-----------CCCceEEEeccccCcchH
Confidence 3577887775 5666666553 488888887532 1111111111110 013567777888765433
Q ss_pred cccCCCccEEEEec
Q 029065 117 KAVAPPFDYIIGTD 130 (199)
Q Consensus 117 ~~~~~~fD~Ii~~~ 130 (199)
...-..+|+|+-..
T Consensus 71 ~~~~~~~d~Vih~A 84 (322)
T PLN02662 71 DSVVDGCEGVFHTA 84 (322)
T ss_pred HHHHcCCCEEEEeC
Confidence 22223578876543
No 495
>PRK07201 short chain dehydrogenase; Provisional
Probab=67.52 E-value=20 Score=32.74 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065 40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 115 (199)
Q Consensus 40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 115 (199)
.++++++|=.|++.|+ +...++..|++|++++.+ +.++.+...+... ..++.+..+|+.+.+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~ 434 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK-------------GGTAHAYTCDLTDSAA 434 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence 4568889988886654 344455669999999863 3444333333222 1256777788876542
Q ss_pred cc-------ccCCCccEEEEeccc
Q 029065 116 IK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 116 ~~-------~~~~~fD~Ii~~~~~ 132 (199)
.. ..-+..|+++.+..+
T Consensus 435 ~~~~~~~~~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 435 VDHTVKDILAEHGHVDYLVNNAGR 458 (657)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468999877554
No 496
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=67.49 E-value=22 Score=33.14 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=50.0
Q ss_pred CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065 37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 112 (199)
Q Consensus 37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 112 (199)
.+..+++++||=.|++.|+ +...++..|++|+++|.+ +.++.....+.... ....+....+|+.+
T Consensus 408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~-----------~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF-----------GAGRAVALKMDVTD 476 (676)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc-----------CCCcEEEEECCCCC
Confidence 3455778999999986654 334445569999999974 34444433332110 01245566777765
Q ss_pred Ccccc-------ccCCCccEEEEecccc
Q 029065 113 EDHIK-------AVAPPFDYIIGTDVVY 133 (199)
Q Consensus 113 ~~~~~-------~~~~~fD~Ii~~~~~~ 133 (199)
..... ..-++.|++|.+..+.
T Consensus 477 ~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 477 EQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 53221 1124789988776543
No 497
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=67.49 E-value=15 Score=30.63 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHH
Q 029065 42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLL 79 (199)
Q Consensus 42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a 79 (199)
++.+||=.|+|. |...+.+|+ .|+ +|++++.+ +-.+.+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 567888888753 555555554 488 68888863 344444
No 498
>PRK06914 short chain dehydrogenase; Provisional
Probab=67.17 E-value=42 Score=26.82 Aligned_cols=80 Identities=21% Similarity=0.179 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065 42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 117 (199)
Q Consensus 42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 117 (199)
.++++|=.|+..|+ +...++..|++|++++. .+.++.....+...+. ...+.+..+|+.+.+...
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~d~~~~~ 70 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL-----------QQNIKVQQLDVTDQNSIH 70 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCceeEEecCCCCHHHHH
Confidence 35678888876554 33444566999999886 3333333322222110 135777788887654321
Q ss_pred ------ccCCCccEEEEeccc
Q 029065 118 ------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 118 ------~~~~~fD~Ii~~~~~ 132 (199)
..-++.|+|+.+...
T Consensus 71 ~~~~~~~~~~~id~vv~~ag~ 91 (280)
T PRK06914 71 NFQLVLKEIGRIDLLVNNAGY 91 (280)
T ss_pred HHHHHHHhcCCeeEEEECCcc
Confidence 012467988776543
No 499
>PRK05717 oxidoreductase; Validated
Probab=66.83 E-value=33 Score=27.04 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065 39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 114 (199)
Q Consensus 39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 114 (199)
..+++++||=.|++.|+ +...++..|++|+.+|.+. -.+..... . ...+.+..+|..+..
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~-------------~~~~~~~~~Dl~~~~ 69 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---L-------------GENAWFIAMDVADEA 69 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---c-------------CCceEEEEccCCCHH
Confidence 34678999988876543 3344555689999998632 21111111 1 124567778877653
Q ss_pred ccc-------ccCCCccEEEEeccc
Q 029065 115 HIK-------AVAPPFDYIIGTDVV 132 (199)
Q Consensus 115 ~~~-------~~~~~fD~Ii~~~~~ 132 (199)
... ..-+++|+++.+...
T Consensus 70 ~~~~~~~~~~~~~g~id~li~~ag~ 94 (255)
T PRK05717 70 QVAAGVAEVLGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 221 112468999876544
No 500
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=66.58 E-value=11 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=29.4
Q ss_pred CcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhh
Q 029065 44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNT 87 (199)
Q Consensus 44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~ 87 (199)
..|+.||||-=..+..+... +.+++=+|.+++++.-++.+...+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~ 125 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESG 125 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCc
Confidence 48999999987666666653 445888888888777777766653
Done!