Query 029066
Match_columns 199
No_of_seqs 109 out of 606
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:56:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 9.9E-54 2.1E-58 355.5 17.2 149 1-154 24-177 (178)
2 KOG3182 Predicted cation trans 100.0 6.2E-53 1.4E-57 353.1 17.0 172 1-182 33-207 (212)
3 COG3703 ChaC Uncharacterized p 100.0 1.3E-45 2.7E-50 307.7 16.3 147 1-158 35-185 (190)
4 PHA03014 hypothetical protein; 99.0 8.6E-09 1.9E-13 85.2 13.4 117 2-154 35-160 (163)
5 PF13772 AIG2_2: AIG2-like fam 98.7 6.4E-08 1.4E-12 70.8 8.2 80 35-148 1-83 (83)
6 cd06661 GGCT_like GGCT-like do 98.7 8.7E-08 1.9E-12 70.0 7.5 69 2-91 28-99 (99)
7 PF06094 AIG2: AIG2-like famil 96.9 0.0079 1.7E-07 44.3 8.0 57 26-92 43-102 (102)
8 KOG4059 Uncharacterized conser 95.8 0.02 4.3E-07 47.8 5.4 108 3-131 54-165 (193)
9 COG2105 Uncharacterized conser 94.4 0.3 6.5E-06 38.8 8.2 57 25-93 44-101 (120)
10 PF06570 DUF1129: Protein of u 85.1 0.9 2E-05 38.3 3.2 54 121-175 3-56 (206)
11 PRK07668 hypothetical protein; 82.4 1.5 3.3E-05 38.9 3.6 56 121-176 3-58 (254)
12 KOG4311 Histidinol dehydrogena 49.7 25 0.00054 32.1 4.1 76 18-102 145-230 (359)
13 TIGR00290 MJ0570_dom MJ0570-re 42.4 1.5E+02 0.0032 25.8 7.7 56 100-155 39-106 (223)
14 COG4858 Uncharacterized membra 32.0 63 0.0014 28.1 3.7 49 122-171 18-67 (226)
15 PF09286 Pro-kuma_activ: Pro-k 30.4 62 0.0013 25.2 3.3 45 90-144 36-80 (143)
16 PF00730 HhH-GPD: HhH-GPD supe 28.5 90 0.002 22.7 3.7 50 104-154 35-88 (108)
17 KOG2359 Uncharacterized conser 25.8 97 0.0021 30.9 4.2 71 105-176 58-139 (688)
18 PF11588 DUF3243: Protein of u 25.7 30 0.00066 25.7 0.6 45 125-169 11-55 (81)
19 PF11784 DUF3320: Protein of u 24.0 65 0.0014 21.5 2.0 20 102-121 24-43 (52)
20 PF13432 TPR_16: Tetratricopep 23.5 2.1E+02 0.0046 18.3 4.7 47 108-154 14-60 (65)
21 TIGR02716 C20_methyl_CrtF C-20 22.4 1.3E+02 0.0029 26.2 4.2 31 103-140 22-52 (306)
22 PLN02259 branched-chain-amino- 22.3 1.8E+02 0.0039 27.2 5.2 51 125-175 128-186 (388)
23 PF08100 Dimerisation: Dimeris 22.1 79 0.0017 21.2 2.1 30 103-135 21-50 (51)
24 COG3870 Uncharacterized protei 21.5 94 0.002 24.3 2.6 38 138-176 46-83 (109)
25 PF11823 DUF3343: Protein of u 20.7 1.2E+02 0.0026 21.0 3.0 26 33-61 38-63 (73)
26 TIGR03461 pabC_Proteo aminodeo 20.5 3.8E+02 0.0082 22.7 6.5 42 125-166 38-79 (261)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=9.9e-54 Score=355.55 Aligned_cols=149 Identities=43% Similarity=0.764 Sum_probs=138.6
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhc-CCcceEEEEEEcC-CC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC-EYDSKTLVDFYRE-GE 77 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~-~~Y~~~~v~v~~~-~~ 77 (199)
+|+||| +|||+|++|||||++|||||||++.++|+|||+||+|++ +++++++++||+||| +||.++++++++. +.
T Consensus 24 ~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~--~~~~~~l~~L~~RE~~~Gy~~~~v~~~~~~~~ 101 (178)
T PF04752_consen 24 YIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPE--EDAEEVLEYLDEREMIGGYTRHWVPFYPEVDT 101 (178)
T ss_pred EecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecC--cCHHHHHHHHhhcccccccceEEEEEEEeccC
Confidence 489999 999999999999999999999999777999999999997 889999999999999 7899999999873 22
Q ss_pred CCCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCC--CCChhHHHHHHHHHH
Q 029066 78 PSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HEDDYIIELANEVRK 154 (199)
Q Consensus 78 ~~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lg--i~D~~L~~L~~~Vr~ 154 (199)
...+.+++||+||+++ +||+|+|+++++++|++|++|+|+||+|+|||++|+++|+++| |.|+||++|+++|++
T Consensus 102 ~~~~~~~~al~yv~~~---~n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~L~~~gp~i~D~~l~~L~~~V~~ 177 (178)
T PF04752_consen 102 DSGPVIVEALVYVADP---DNPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEALRELGPGIRDPHLFALERRVRE 177 (178)
T ss_pred CCCceEEEEEEEEecC---CCccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Confidence 2334456899999999 9999999999999999999999999999999999999999999 999999999999986
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-53 Score=353.09 Aligned_cols=172 Identities=45% Similarity=0.724 Sum_probs=160.7
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcCCcceEEEEEEcCCCCC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPS 79 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~~Y~~~~v~v~~~~~~~ 79 (199)
||+||+ ||||+|+||||||+.||||+||++++++.|||+||+|++ +++.++++||+.||++||..+.|+|++.+...
T Consensus 33 fI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g--~~~~~~l~yl~~RE~nGY~~~~v~f~~e~~~~ 110 (212)
T KOG3182|consen 33 FIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRG--KQASEVLEYLNVRELNGYTTHEVEFYPEDAAE 110 (212)
T ss_pred hheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecc--hhHHHHHHHHHHHhhcCcceeeeeeeccCCCC
Confidence 799999 999999999999999999999999999999999999997 89999999999999999999999999877776
Q ss_pred CCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHhc
Q 029066 80 QPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI--GHEDDYIIELANEVRKELG 157 (199)
Q Consensus 80 ~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~l--gi~D~~L~~L~~~Vr~~~~ 157 (199)
.+.++.+|+||+++ +|+.|+|+.++++||+||++|.||||+|+||||||+++|+++ |+.|.||++|++.|+..+.
T Consensus 111 ~p~v~~vlvyvaTp---~N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~am~~l~p~~~D~hl~eL~~~Vrk~l~ 187 (212)
T KOG3182|consen 111 LPEVLGVLVYVATP---DNEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKAMRQLFPGAEDEHLFELENEVRKYLV 187 (212)
T ss_pred CCceEEEEEEEecC---CCccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 67788999999999 899999999999999999999999999999999999999999 7999999999999999888
Q ss_pred cccccccccccccCCCCCCCCCCCC
Q 029066 158 TAEKGILKERKLVGSSSRMPLTKSH 182 (199)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (199)
+.. ++.+.| .+|+.|+.+++
T Consensus 188 ~~~----~~~~al-~~~~~i~~~~~ 207 (212)
T KOG3182|consen 188 ESR----PLVHAL-LEPSGIRVEEK 207 (212)
T ss_pred ccc----hhhhhh-cccchhhhhhh
Confidence 533 555777 88888888766
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=307.70 Aligned_cols=147 Identities=29% Similarity=0.437 Sum_probs=138.2
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREG 76 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~ 76 (199)
|++||| +||+.|++||||+++||+|++|++ ||+|+|||||||+ +.++++++||++|||. .|.++|+++..++
T Consensus 35 ~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~~--GGsc~GvafRip~--~~~~~v~~yL~~RE~~~t~~y~p~~l~v~~~~ 110 (190)
T COG3703 35 TLHGYHRSFCLRSTDHRGTAEQPGLVLGLDR--GGSCEGVAYRIPE--AHAEEVLEYLREREMNYTLVYVPRWLPVELEG 110 (190)
T ss_pred EEecceeEEEEEEeeecCCcCCCceEEEeeC--CCcEEEEEEEcCc--hhhHHHHHHHHHhhccccceeeeEEEEEecCC
Confidence 589999 999999999999999999999997 9999999999997 8999999999999994 6888888888776
Q ss_pred CCCCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHh
Q 029066 77 EPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKEL 156 (199)
Q Consensus 77 ~~~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~ 156 (199)
+. .+.|++||+++ .|++|+|+++.+++|.+|+.|+|+||+|.|||++|..+|+++||+|+.|+.|+..|....
T Consensus 111 g~----~~~al~~v~~~---~h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~hL~~~gi~d~~l~~l~~~v~~~~ 183 (190)
T COG3703 111 GR----RVNALVFVGDR---KHPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQHLRKLGIRDHNLEDLLELVAALL 183 (190)
T ss_pred Cc----EEEEEEEEecC---CccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 54 57899999999 999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 029066 157 GT 158 (199)
Q Consensus 157 ~~ 158 (199)
.+
T Consensus 184 ~~ 185 (190)
T COG3703 184 AE 185 (190)
T ss_pred HH
Confidence 54
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.02 E-value=8.6e-09 Score=85.20 Aligned_cols=117 Identities=12% Similarity=0.156 Sum_probs=90.5
Q ss_pred cceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCCC
Q 029066 2 IYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGE 77 (199)
Q Consensus 2 i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~~ 77 (199)
+.||. +|.- +| ...|-++|+++++|+.|||+.|+|+. ..++.||+-|.. .|.+..+.|.+.++
T Consensus 35 L~~~~~~L~f-----~~--~~~Ga~ATIvp~~g~~V~Gvlw~i~~------~dl~~LD~~EGvp~~~Y~~~~v~V~~~~~ 101 (163)
T PHA03014 35 ILGHSFKLCY-----SK--EIDSVIASIKKDDNGIVFGILYEFNE------SIMKKFDKQEFIDKNIYKLAKMNVLDLED 101 (163)
T ss_pred eeccceEEec-----cC--CcCCceEEEEECCCCEEEEEEEEeCH------HHHHHHhhhcCCCcCceEEEEEEEEeCCC
Confidence 45565 5552 23 23778899999999999999999995 678899999984 59999999987653
Q ss_pred CCCCcceeEEEE--EEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCC---CChhHHHHHHHH
Q 029066 78 PSQPALTGVIVF--TSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGH---EDDYIIELANEV 152 (199)
Q Consensus 78 ~~~~~~~~Alvy--va~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi---~D~~L~~L~~~V 152 (199)
.. .+.|++| +.++ .++.+. +.=|...||--+.+..++.|+ +..++..|.+..
T Consensus 102 ~~---~~~a~~Y~~~~~~---~~~~~~-----------------~~~Ps~~Yl~~I~~Ga~e~Gl~~~P~~Y~~~l~~~~ 158 (163)
T PHA03014 102 EK---IIEAQAYKAILDD---DNNMFY-----------------DAPNFNIYKDIIIDALIENNILDYPLWYIKHINNIF 158 (163)
T ss_pred Cc---EEEEEEEehhcCC---Cccccc-----------------CCCChHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 22 3689999 6665 444321 223566999999999999999 999999999877
Q ss_pred HH
Q 029066 153 RK 154 (199)
Q Consensus 153 r~ 154 (199)
++
T Consensus 159 ~~ 160 (163)
T PHA03014 159 KE 160 (163)
T ss_pred HH
Confidence 65
No 5
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=98.74 E-value=6.4e-08 Score=70.83 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=62.8
Q ss_pred eeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCCCCCCCcceeEEEEEEccCCCCCCCCCCCCCHHHHH
Q 029066 35 ICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMA 111 (199)
Q Consensus 35 ~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~~~~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA 111 (199)
.|||+.|+|++ +.+..||.+|.. .|.+..+.|...++. .+.|++|++++ ... ++
T Consensus 1 ~V~Gvly~l~~------~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~----~~~a~tY~~~~---~~~---~~------- 57 (83)
T PF13772_consen 1 RVWGVLYELSE------EDLESLDRYEGVPIGAYRRIEVTVSTADGK----PVEAFTYVANP---KPE---GP------- 57 (83)
T ss_dssp EEEEEEEEEEG------GGHHHHHHHTTTTTTSEEEEEEEEEETTCE----EEEEEEEEESS---EEE------------
T ss_pred CEEEEEEEECH------HHHHHHHHhcCCCCCCEEEEEEEEEcCCCC----EEEEEEEEcCC---CCC---CC-------
Confidence 48999999996 568899999974 599999999885543 36899999998 421 11
Q ss_pred HHHhhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 029066 112 RQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIEL 148 (199)
Q Consensus 112 ~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L 148 (199)
|..+||-.+.+..++.|++..|+..|
T Consensus 58 -----------Ps~~Yl~~i~~GA~e~gLp~~Yv~~L 83 (83)
T PF13772_consen 58 -----------PSDRYLDLILRGAREHGLPAEYVEKL 83 (83)
T ss_dssp -------------HHHHHHHHHHHHHCT--HHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 88999999999999999999999876
No 6
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=98.68 E-value=8.7e-08 Score=69.98 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=56.0
Q ss_pred cceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC--CcceEEEEEEcCCCC
Q 029066 2 IYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE--YDSKTLVDFYREGEP 78 (199)
Q Consensus 2 i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~--~Y~~~~v~v~~~~~~ 78 (199)
+.||+ .|+..+ . ..+|++++++.|+|++|+++ ++.++.||.+|.. .|.+..+++...++.
T Consensus 28 l~g~~l~~~~~~-------~----~p~~~~~~~~~v~G~v~~i~------~~~l~~LD~~E~~~~~Y~r~~v~v~~~~~~ 90 (99)
T cd06661 28 LKGYRLVFGGGS-------G----YPGLVPGPGARVWGELYEVD------PEDLARLDAFEGVPGGYRREEVEVELEDGE 90 (99)
T ss_pred ecCcEEEecCCC-------c----cCEEEeCCCCEEEEEEEEEC------HHHHHhhhhhcCCCCCeEEEEEEEEeCCCC
Confidence 67999 888776 2 34566677889999999998 3789999999997 999999999986543
Q ss_pred CCCcceeEEEEEE
Q 029066 79 SQPALTGVIVFTS 91 (199)
Q Consensus 79 ~~~~~~~Alvyva 91 (199)
.+.|.+|+.
T Consensus 91 ----~~~a~~Y~~ 99 (99)
T cd06661 91 ----GVEAWVYVA 99 (99)
T ss_pred ----EEEEEEEeC
Confidence 367999974
No 7
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=96.86 E-value=0.0079 Score=44.27 Aligned_cols=57 Identities=14% Similarity=0.036 Sum_probs=43.1
Q ss_pred eEEeeCCCC-eeEEEEEEeeCCCccHHHHHHHHHHhh--cCCcceEEEEEEcCCCCCCCcceeEEEEEEc
Q 029066 26 CTLEKSQET-ICWGVAYCVRGGPEKERLAMEYLERRE--CEYDSKTLVDFYREGEPSQPALTGVIVFTST 92 (199)
Q Consensus 26 ltL~~~~gg-~c~GvAyri~~~~~~~e~vl~~Ld~RE--~~~Y~~~~v~v~~~~~~~~~~~~~Alvyva~ 92 (199)
-+|.+.+++ .++|..|.|.. +.++.||.-| ...|.+..+++...++. .+.|.+|+.+
T Consensus 43 P~l~~~~~~~~V~G~l~~v~~------~~l~~LD~~E~~~~~Y~R~~v~v~~~~g~----~~~a~vYv~~ 102 (102)
T PF06094_consen 43 PALVPGEGSGRVEGELYEVDD------EELARLDEYEGEGSLYRRVRVPVELGDGE----EVEAWVYVWN 102 (102)
T ss_dssp EEEESCTTSSEEEEEEEEE-H------HHHHHHHHHTTTTTSEEEEEEEEECCTSS----EEEEEEEEE-
T ss_pred CEEEEcCCCCEEEEEEEEECH------HHHHhhHhhcCCCCceEEEEEEEEeCCCC----EeEEEEEEEC
Confidence 345555666 99999999974 4599999996 45899999999977654 3589999864
No 8
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.02 Score=47.84 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred ceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCCCC
Q 029066 3 YCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEP 78 (199)
Q Consensus 3 ~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~~~ 78 (199)
.-|+ -|...|... -|-|+|+.+.+|..+||+.++++- .-+.-||.-|.+ -|.+..|.|.+..+.
T Consensus 54 ~dfrLdFan~S~~W------~G~vATI~~t~GdeVWG~vWKm~~------snl~slDeQEgv~~G~Y~~~~V~V~t~eg~ 121 (193)
T KOG4059|consen 54 PDFRLDFANESAGW------SGSVATIVPTQGDEVWGTVWKMDL------SNLPSLDEQEGVSQGIYEPRTVYVKTHEGE 121 (193)
T ss_pred cceeeecccccccc------ccceeEEecCCCCeEEEEEEEccc------ccCccchhhhcccccceEEEEEEEecCCCc
Confidence 3455 665555443 466999999999999999999985 457789999954 499999999887554
Q ss_pred CCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHH
Q 029066 79 SQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKL 131 (199)
Q Consensus 79 ~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L 131 (199)
+ ..|=+|..+. -.-+...|-..--++|....=.++--.||+.+|
T Consensus 122 ~----itcR~Yl~sn-----l~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~qkL 165 (193)
T KOG4059|consen 122 S----ITCRAYLLSN-----LYELPKQPSPTYKQCIVKGAKENSLPEDYVQKL 165 (193)
T ss_pred e----eehhHhhhhh-----hhhccCCCCchHHhhhhhcccccCCcHHHHHHH
Confidence 3 2344566542 111111333444566777777777777887665
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.3 Score=38.79 Aligned_cols=57 Identities=12% Similarity=0.027 Sum_probs=45.4
Q ss_pred eeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC-CcceEEEEEEcCCCCCCCcceeEEEEEEcc
Q 029066 25 TCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE-YDSKTLVDFYREGEPSQPALTGVIVFTSTP 93 (199)
Q Consensus 25 VltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~-~Y~~~~v~v~~~~~~~~~~~~~Alvyva~~ 93 (199)
..++++++ +.+||=+|+++ +++++.||.=|.. +|.+.++.+.++.++. .|.+|+.++
T Consensus 44 YP~~~~g~-~~V~Gevy~~d------~~~l~~LDelE~~~~y~r~~v~v~~~~G~~-----~aw~Y~y~~ 101 (120)
T COG2105 44 YPGLVPGE-GKVHGEVYRID------EETLEALDELEDYGGYYRREVEVTTPLGSK-----EAWLYVYAE 101 (120)
T ss_pred CcEEcCCC-CEEEEEEEEEC------HHHHhhhhhhhccCceEEEEEEEEcCCCCE-----EEEEEEEcC
Confidence 44555533 49999999998 4889999999987 6889999888777642 589999987
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=85.09 E-value=0.9 Score=38.28 Aligned_cols=54 Identities=30% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHhccccccccccccccCCCCC
Q 029066 121 CGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSR 175 (199)
Q Consensus 121 sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~~~~~~~~~~ 175 (199)
+-.|.||++++-..|++-+++|...+++...+-..+-++.+.-..-+.+.| +|.
T Consensus 3 TkkN~~y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG-~P~ 56 (206)
T PF06570_consen 3 TKKNQEYIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFG-DPK 56 (206)
T ss_pred chHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcC-CHH
Confidence 457999999999999999999999888777665544333333336788888 663
No 11
>PRK07668 hypothetical protein; Validated
Probab=82.42 E-value=1.5 Score=38.88 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHhccccccccccccccCCCCCC
Q 029066 121 CGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRM 176 (199)
Q Consensus 121 sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~~~~~~~~~~~ 176 (199)
+-.|.||+.++...|+.-|+.|...+++...+...+-+.++.-.+.+.+.|.+|..
T Consensus 3 TkeNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~ 58 (254)
T PRK07668 3 SKEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKE 58 (254)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHH
Confidence 34699999999999999999999988888877765544444333889999997754
No 12
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=49.66 E-value=25 Score=32.10 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcCCcceEEEEEEcCCCCCCCc----------ceeEE
Q 029066 18 TPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPA----------LTGVI 87 (199)
Q Consensus 18 Tpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~~Y~~~~v~v~~~~~~~~~~----------~~~Al 87 (199)
|-..-|++.||+-.+-|.|-|+.|-=. +.+-..++-+-..+|.+.--.+...+..+... -.++|
T Consensus 145 tDr~dgl~~tlvv~~~g~~Lglvyssk------es~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l 218 (359)
T KOG4311|consen 145 TDRKDGLVATLVVVDTGAVLGLVYSSK------ESLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSL 218 (359)
T ss_pred cCCCCCeEEEEEehhhhhhhhhhcccH------HHHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccce
Confidence 445568999999888999999999766 24445666666666655444344433322111 14689
Q ss_pred EEEEccCCCCCCCCC
Q 029066 88 VFTSTPDKVSNKYYL 102 (199)
Q Consensus 88 vyva~~~~~~n~~y~ 102 (199)
.|+..+ ++|-|+
T Consensus 219 ~f~v~q---~g~gfC 230 (359)
T KOG4311|consen 219 IFLVTQ---DGPGFC 230 (359)
T ss_pred EEEEec---CCCccc
Confidence 999999 788555
No 13
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=42.36 E-value=1.5e+02 Score=25.75 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHhhccC-------CCCCcHHHHHHHHHHHHhCCC-----CChhHHHHHHHHHHH
Q 029066 100 YYLGPAPLEEMARQIATAVG-------PCGNNRDYLFKLEKAMFDIGH-----EDDYIIELANEVRKE 155 (199)
Q Consensus 100 ~y~G~~~~e~iA~~Ia~A~G-------~sG~N~EYL~~L~~~Lr~lgi-----~D~~L~~L~~~Vr~~ 155 (199)
.|.-..+.-++.+..|.|-| ..|++.+|+-.+.+.|++.|+ =|-.+....+.+.+.
T Consensus 39 s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v 106 (223)
T TIGR00290 39 SYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERV 106 (223)
T ss_pred cccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHH
Confidence 34333444477788888888 358899999999999999874 244444444444443
No 14
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=32.02 E-value=63 Score=28.09 Aligned_cols=49 Identities=31% Similarity=0.534 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHHhccccccccccccccC
Q 029066 122 GNNRDYLFKLEKAMFDIGHEDDYIIELANEV-RKELGTAEKGILKERKLVG 171 (199)
Q Consensus 122 G~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~V-r~~~~~~~~~~~~~~~~~~ 171 (199)
-.|.||+.....+|..-|-.|..+..+...+ -+.+.+-.||+ .-|+|.|
T Consensus 18 kkNqeyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQkkGi-tARkL~g 67 (226)
T COG4858 18 KKNQEYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQKKGI-TARKLLG 67 (226)
T ss_pred HHhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhccc-hHHHHcC
Confidence 3699999999999999999999988766555 45555545655 6799988
No 15
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=30.38 E-value=62 Score=25.20 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=31.6
Q ss_pred EEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCCChh
Q 029066 90 TSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDY 144 (199)
Q Consensus 90 va~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~ 144 (199)
|++| .+|+|---++.+++++.. |++.+.+-....+|+..|+....
T Consensus 36 vsdP---~s~~Ygk~Lt~~e~~~~~-------~p~~~~v~~V~~wL~~~G~~~~~ 80 (143)
T PF09286_consen 36 VSDP---GSPNYGKYLTPEEFAALF-------APSPEDVAAVKSWLKSHGLTVVE 80 (143)
T ss_dssp HHTT---TSTTTT----HHHHHHHH-------S--HHHHHHHHHHHHHCT-EEEE
T ss_pred CcCC---CCcccccCCCHHHHHHHH-------CCCHHHHHHHHHHHHHcCCceeE
Confidence 3466 899998889999999975 58899999999999999975544
No 16
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=28.47 E-value=90 Score=22.72 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhC----CCCChhHHHHHHHHHH
Q 029066 104 PAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI----GHEDDYIIELANEVRK 154 (199)
Q Consensus 104 ~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~l----gi~D~~L~~L~~~Vr~ 154 (199)
.++.+++.+.|.. +|.++.=..||.++++.+... -..|-|+.....++..
T Consensus 35 ~~~~~el~~~i~~-~G~~~~ka~~i~~~a~~~~~~~d~~~~~D~~v~r~~~r~~~ 88 (108)
T PF00730_consen 35 EASEEELRELIRP-LGFSRRKAKYIIELARAILGRPDPFPPVDTHVRRVLQRLGG 88 (108)
T ss_dssp CSHHHHHHHHHTT-STSHHHHHHHHHHHHHHHHC-SSSS-TTSHHHHHHHHHHTS
T ss_pred hCCHHHHHHHhhc-cCCCHHHHHHHHHHHHHhhhcccceecCcHHHHHHHHHHcC
Confidence 3567888887777 888889999999999999842 2688888888877754
No 17
>KOG2359 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.82 E-value=97 Score=30.87 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=48.1
Q ss_pred CCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHHhccccccccccccccCCC
Q 029066 105 APLEEMARQIATAVGPCGNNRDYLFKLEKAMFD-----------IGHEDDYIIELANEVRKELGTAEKGILKERKLVGSS 173 (199)
Q Consensus 105 ~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~-----------lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~~~~~~~~ 173 (199)
-.+.+.|.+|--|+-..|.-.||||+|.-..-+ -|...-.+..+.+++.+.+...++ +.++.+.-||+
T Consensus 58 ~~f~~a~~~~qgs~~vy~~kv~~~y~l~~~~~~~~~~~r~~~~~kg~~n~~~a~~~~~~~e~~~~~~~-~v~~~~~qisa 136 (688)
T KOG2359|consen 58 YDFQRACRIIQGSCAVYGRKVDHVYELTISVVDLVENRRGAGRRKGSTNYDLADIDSLKQEALANFEK-TVKEEKKSIDA 136 (688)
T ss_pred ccHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHhccchhccCCCCCccchhhhHHHHHHHhhhHh-HHHHHhhcccc
Confidence 357899999999999999999999998644322 245566666777777766554444 33444445555
Q ss_pred CCC
Q 029066 174 SRM 176 (199)
Q Consensus 174 ~~~ 176 (199)
++|
T Consensus 137 ~~~ 139 (688)
T KOG2359|consen 137 VRM 139 (688)
T ss_pred cee
Confidence 554
No 18
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=25.69 E-value=30 Score=25.73 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHhccccccccccccc
Q 029066 125 RDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGILKERKL 169 (199)
Q Consensus 125 ~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~~~~ 169 (199)
.+||-.=++.-.++|++|..+..++..|..-+.......+++++|
T Consensus 11 K~~Lg~~v~~ae~~Gms~e~i~~~A~~iGdyLA~~vdP~N~Eerl 55 (81)
T PF11588_consen 11 KDFLGDRVEQAEKLGMSEETIANLAYQIGDYLAKNVDPKNPEERL 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHT-----SHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 467888888888899999999999999998876544445666554
No 19
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=24.01 E-value=65 Score=21.48 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHhhccCCC
Q 029066 102 LGPAPLEEMARQIATAVGPC 121 (199)
Q Consensus 102 ~G~~~~e~iA~~Ia~A~G~s 121 (199)
-||.+.+.+++.|++|.|.+
T Consensus 24 EgPI~~~~L~~Ri~~a~G~~ 43 (52)
T PF11784_consen 24 EGPIHEDELARRIARAWGLS 43 (52)
T ss_pred cCCccHHHHHHHHHHHcCcc
Confidence 36777788888888888765
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=23.51 E-value=2.1e+02 Score=18.33 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=34.9
Q ss_pred HHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 029066 108 EEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRK 154 (199)
Q Consensus 108 e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~ 154 (199)
++-......+.-..-.|.++++.+...+...|-.|..+..+.+.++.
T Consensus 14 ~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 14 DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555566679999999999999999888888777766643
No 21
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=22.35 E-value=1.3e+02 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCC
Q 029066 103 GPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGH 140 (199)
Q Consensus 103 G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi 140 (199)
|+.+.+++|+.+ |.+.+++.++.++|..+|+
T Consensus 22 gp~t~~eLA~~~-------~~~~~~~~~lL~~L~~lgl 52 (306)
T TIGR02716 22 GPKDLATLAADT-------GSVPPRLEMLLETLRQMRV 52 (306)
T ss_pred CCCCHHHHHHHc-------CCChHHHHHHHHHHHhCCC
Confidence 688899988754 7889999999999999984
No 22
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=22.30 E-value=1.8e+02 Score=27.18 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHhcccc-------ccccccc-cccCCCCC
Q 029066 125 RDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAE-------KGILKER-KLVGSSSR 175 (199)
Q Consensus 125 ~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~~~~~-------~~~~~~~-~~~~~~~~ 175 (199)
.+.+.||...++.+++..+-.+.+.+.+.+.+.... .+.+..+ .+.|..+.
T Consensus 128 ~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~~vp~~~~~~lyiRp~v~g~~~~ 186 (388)
T PLN02259 128 DHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPLLMGSGPI 186 (388)
T ss_pred HHHHHHHHHhHHHhCCCCcCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCc
Confidence 366889999999999987778888888887765432 2344445 45565543
No 23
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=22.06 E-value=79 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHH
Q 029066 103 GPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 135 (199)
Q Consensus 103 G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~L 135 (199)
+++|++|+|..+-. ..-.+.+||.|+-+.|
T Consensus 21 ~~ls~~eia~~l~~---~~p~~~~~L~RimR~L 50 (51)
T PF08100_consen 21 GPLSLSEIAARLPT---SNPSAPPMLDRIMRLL 50 (51)
T ss_dssp S-BEHHHHHHTSTC---T-TTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC---CCcchHHHHHHHHHHh
Confidence 67899999988874 3445678999887766
No 24
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.50 E-value=94 Score=24.30 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=27.3
Q ss_pred CCCCChhHHHHHHHHHHHhccccccccccccccCCCCCC
Q 029066 138 IGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRM 176 (199)
Q Consensus 138 lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~~~~~~~~~~~ 176 (199)
+|+.|.+|.+|...+++.+..-+. -..-.+.||-|-+.
T Consensus 46 iGved~~vd~~~s~Ike~C~~req-~v~~~~~~~~sa~~ 83 (109)
T COG3870 46 IGVEDDRVDALRSLIKENCKSREQ-LVTPISPMGGSADS 83 (109)
T ss_pred EecccchhHHHHHHHHHHhhhHhh-ccCCCCccCCCCCc
Confidence 478999999999999987765344 33556777766543
No 25
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.67 E-value=1.2e+02 Score=21.04 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.3
Q ss_pred CCeeEEEEEEeeCCCccHHHHHHHHHHhh
Q 029066 33 ETICWGVAYCVRGGPEKERLAMEYLERRE 61 (199)
Q Consensus 33 gg~c~GvAyri~~~~~~~e~vl~~Ld~RE 61 (199)
...| |++.+++. ++.+.+.+.|..-.
T Consensus 38 ~~~C-G~al~~~~--~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 38 SAGC-GLALRFEP--EDLEKIKEILEENG 63 (73)
T ss_pred cCCC-CEEEEECh--hhHHHHHHHHHHCC
Confidence 3445 99999996 67777777665443
No 26
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=20.46 E-value=3.8e+02 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHhcccccccccc
Q 029066 125 RDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGILKE 166 (199)
Q Consensus 125 ~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~~~~~~~~~~~~~ 166 (199)
.+-+.||..+++.+++.-+...+|.+.+.+.+.....+.++.
T Consensus 38 ~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~~~~~~ir~ 79 (261)
T TIGR03461 38 DLHLERLQDAAARLGIPLPDWDALREEMAQLAAGYSLGVLKV 79 (261)
T ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 577889999999999877667778877777665432334444
Done!