Query 029066
Match_columns 199
No_of_seqs 109 out of 606
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 99.7 1.8E-17 6.1E-22 136.1 8.6 134 1-154 45-182 (188)
2 2qik_A UPF0131 protein YKQA; N 99.7 9.8E-17 3.4E-21 139.6 8.7 113 1-139 159-275 (285)
3 2g0q_A AT5G39720.1 protein; st 98.8 5.7E-08 2E-12 79.0 11.5 110 2-141 47-157 (173)
4 2jqv_A AT3G28950, AIG2 protein 98.7 1.3E-07 4.6E-12 75.7 10.5 107 1-138 37-145 (165)
5 3jud_A AIG2-like domain-contai 97.1 0.00093 3.2E-08 53.2 6.2 61 33-102 60-129 (153)
6 1vkb_A Hypothetical protein; g 96.8 0.003 1E-07 50.5 6.9 58 26-93 65-131 (161)
7 1xhs_A Hypothetical UPF0131 pr 95.1 0.042 1.4E-06 41.7 5.8 64 2-93 30-95 (121)
8 1v30_A Hypothetical UPF0131 pr 92.4 0.12 4.2E-06 39.3 4.1 53 21-93 47-100 (124)
9 2qik_A UPF0131 protein YKQA; N 85.8 1.1 3.9E-05 38.1 5.6 57 21-93 43-101 (285)
10 3cry_A Gamma-glutamyl cyclotra 69.2 3.5 0.00012 32.7 3.3 32 120-151 132-163 (188)
11 4fp9_B Mterf domain-containing 42.0 41 0.0014 29.4 5.7 48 105-152 90-137 (335)
12 3m66_A Mterf3, mterf domain-co 25.9 75 0.0026 25.9 4.5 41 106-146 89-130 (270)
13 4fjo_A DNA repair protein REV1 24.8 64 0.0022 23.1 3.4 52 98-153 2-57 (97)
14 3daa_A D-amino acid aminotrans 21.7 1.6E+02 0.0053 24.5 5.7 67 125-191 45-116 (277)
15 2y9w_C Lectin-like fold protei 20.6 64 0.0022 24.5 2.7 42 2-44 59-101 (150)
16 1eoq_A GAG polyprotein capsid 20.4 71 0.0024 23.5 2.8 47 118-164 5-52 (96)
17 2dah_A Ubiquilin-3; UBA domain 20.0 54 0.0018 21.2 1.9 25 124-149 6-32 (54)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.71 E-value=1.8e-17 Score=136.12 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=102.4
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREG 76 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~ 76 (199)
+|+||+ .||+.|.+| ++..+|.++++++++|+.|||++|+|++ +.++.||.||+. .|.+.+++|.+.+
T Consensus 45 ~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~------~~l~~LD~~Eg~~~g~Y~r~~v~V~~~~ 116 (188)
T 3cry_A 45 RLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNK------SNLNSLDEQQGVKSGMYVVIEVKVATQE 116 (188)
T ss_dssp EEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEG------GGHHHHHHHTTGGGTSCEEEEEEEEETT
T ss_pred EEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECH------HHHHHHHHHhCCCCCcEEEEEEEEEeCC
Confidence 378999 899999888 7777899999999889999999999995 358899999984 7999999998865
Q ss_pred CCCCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 029066 77 EPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRK 154 (199)
Q Consensus 77 ~~~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr~ 154 (199)
+. .+.|++|++++ .++ ..|.++.+.+|+++.+.+|.+.||+.+|.. +...|-.-+.+++|+++++.
T Consensus 117 g~----~~~a~vYv~~~---~~~----~~ps~~Yl~~i~~g~~~~gl~~~y~~~L~~-~~~~g~~~p~~~~~~~~~~~ 182 (188)
T 3cry_A 117 GK----EITCRSYLMTN---YES----APPSPQYKKIICMGAKENGLPLEYQEKLKA-IEPNDYTGKVSEEIEDIIKK 182 (188)
T ss_dssp CC----EEEEEEEECSS---EEE----CCCCHHHHHHHHHHHHHTTCCHHHHHHHHT-CCCCCCCSCCCHHHHHHHHC
T ss_pred CC----EEEEEEEEecC---CCC----CCChHHHHHHHHHHHHHhCcCHHHHHHHhc-ccccCCCCCCcHHHHHHHHh
Confidence 53 36899999987 542 456677777777777777888888776653 22234444455666655543
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.67 E-value=9.8e-17 Score=139.60 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=96.6
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhcC---CcceEEEEEEcCC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREG 76 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~~---~Y~~~~v~v~~~~ 76 (199)
+|+||+ +|| .+.+|+| ++||+++ |+.|||++|+|++ +.+++||.||+. .|.+.+++|.+.+
T Consensus 159 ~L~G~~l~F~-~~~~~~g-------~a~iv~~-g~~v~Gvly~i~~------~~l~~LD~~Eg~~~g~Y~r~~v~v~~~~ 223 (285)
T 2qik_A 159 VLKGYTTRFT-LKREDGS-------RADMLED-GGTTEGVLYRIPY------SALSYLYKREGVESLTYRPAFVDVEAGG 223 (285)
T ss_dssp EEETCEEEEE-EEETTEE-------EEEEECS-SCEEEEEEEEECG------GGHHHHHHHTTTTTTSEEEEEEEEEETT
T ss_pred EEeCeEEEcC-cCCCCCe-------eeeEEEC-CCEEEEEEEEECH------HHHHHHHHhhCCCCCceEEEEEEEEECC
Confidence 378999 999 6666655 5689998 9999999999995 358899999974 6999999998865
Q ss_pred CCCCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCC
Q 029066 77 EPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG 139 (199)
Q Consensus 77 ~~~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lg 139 (199)
+. .+.|++|++++ .+ .+..|.++.+.+|+++.+ +|.|.|||.+|.+.++.+.
T Consensus 224 g~----~~~a~~Yv~~~---~~---~~~~Ps~~Yl~~i~~g~~-~g~~~~Y~~~l~~~~~~~~ 275 (285)
T 2qik_A 224 RH----YKDCLTFLVLQ---KE---AEIAPPQHYQIEIERGAE-LYLSPEFTEKLKRHMNSLP 275 (285)
T ss_dssp EE----EEEEEEEEESS---CC---CCCCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHSC
T ss_pred CC----EEEEEEEEecC---CC---CCCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhhh
Confidence 42 36899999998 55 367788999999999999 9999999999999999986
No 3
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=98.78 E-value=5.7e-08 Score=78.96 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=81.0
Q ss_pred cceeeeeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEE-eeCCCccHHHHHHHHHHhhcCCcceEEEEEEcCCCCCC
Q 029066 2 IYCFVSFALACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQ 80 (199)
Q Consensus 2 i~G~~rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyr-i~~~~~~~e~vl~~Ld~RE~~~Y~~~~v~v~~~~~~~~ 80 (199)
|+||++|+.+ | ...|++ ++.+++.|+|.+|. |+ ++.++.||.+|...|.+..++|...++..
T Consensus 47 l~Gy~l~~~~-----~-~~yP~l----v~~~g~~V~G~v~~~v~------~~~l~~LD~~Eg~~Y~R~~v~V~~~dg~~- 109 (173)
T 2g0q_A 47 LPGFQRFRLK-----G-RLYPCI----VPSEKGEVHGKVLMGVT------SDELENLDAVEGNEYERVTVGIVREDNSE- 109 (173)
T ss_dssp EETCEECCCC-----S-SSCCCE----ECCTTCEEEEEEEEEEC------HHHHHHHHHHHTTTEEEEEEEEEESSSSC-
T ss_pred EcCeEEEeeC-----C-CeeeEE----EECCCCEEEEEEEEEcC------HHHHHHHHHHhhcCCEEEEEEEEECCCCe-
Confidence 6899877652 2 345654 45568899999985 76 47899999999989999999998755321
Q ss_pred CcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCC
Q 029066 81 PALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE 141 (199)
Q Consensus 81 ~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~ 141 (199)
.+.|.+|+++++ ..+++.+..++++-.+. ....|+....+.++..+-.
T Consensus 110 --~v~A~vYv~~~~--~~~~~~~~~~~~~W~~~---------~~~~~~~~~~~~m~~~~~p 157 (173)
T 2g0q_A 110 --KMAVKTYMWINK--ADPDMFGEWNFEEWKRL---------HKKKFIETFKKIMECKKKP 157 (173)
T ss_dssp --EEEEEEEEESCS--SCSSSCCCCHHHHHHHH---------HHHHHHHHHHHHHHHHTCC
T ss_pred --EEEEEEEEEcCc--cccccCCCcCHHHHHHH---------hHHHHHHHHHHHHHhccCC
Confidence 368999999872 24678888888776554 2366888888888777643
No 4
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=98.68 E-value=1.3e-07 Score=75.71 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=70.8
Q ss_pred Ccceee-eeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEE-eeCCCccHHHHHHHHHHhhcCCcceEEEEEEcCCCC
Q 029066 1 MIYCFV-SFALACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEP 78 (199)
Q Consensus 1 ~i~G~~-rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyr-i~~~~~~~e~vl~~Ld~RE~~~Y~~~~v~v~~~~~~ 78 (199)
+|+||+ .|+++ ...|++|. .+++.|+|++|+ |+ ++.++.||.||...|.+..+.+...++.
T Consensus 37 ~l~Gy~~~~~~~-------~~yP~lv~----~~~~~V~G~v~~~v~------~~~l~~LD~~E~~~Y~R~~v~v~~~dg~ 99 (165)
T 2jqv_A 37 VLHGYHRYKLKG-------LPYPCIVS----SDSGKVNGKVITGVS------DAELNNFDVIEGNDYERVTVEVVRMDNS 99 (165)
T ss_dssp EEETCEECCCTT-------SSSCCEES----CCSSEEEEEEEEEEC------HHHHHHHHHTTTTSEEEEEEEEEETTTT
T ss_pred EEeCeEEEecCC-------CCCCEEEE----CCCCEEEEEEEEeCC------HHHHHHHHHhccCCcEEEEEEEEECCCC
Confidence 378999 55432 25676654 558999999997 65 4789999999999999999999876553
Q ss_pred CCCcceeEEEEEEccCCCCCCCCCCCCCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhC
Q 029066 79 SQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDI 138 (199)
Q Consensus 79 ~~~~~~~Alvyva~~~~~~n~~y~G~~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~l 138 (199)
. .+.|.+|+.+.. .++.-.|.=++++..+. .-.+|+-.+...+..+
T Consensus 100 ~---~~~a~vYv~~~~--~~~i~~G~W~~~~~~~~---------~~~~~~~~t~~~~~~~ 145 (165)
T 2jqv_A 100 E---KVKVETYVWVNK--DDPRMYGEWDFEEWRVV---------HAEKFVETFRKMLEWN 145 (165)
T ss_dssp E---EEEEEEEEETTT--TSCCSCSCCCHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred e---EEEEEEEEECCC--cccccCCCcCHHHHHHH---------HHHHHHHHHHHHHHhc
Confidence 1 357999999762 23333344445554332 1245555555554443
No 5
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=97.08 E-value=0.00093 Score=53.21 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCeeEEEEEEeeCCCccHHHHHHHHHHhhc--CCcceEEEEEEcCCC-------CCCCcceeEEEEEEccCCCCCCCCC
Q 029066 33 ETICWGVAYCVRGGPEKERLAMEYLERREC--EYDSKTLVDFYREGE-------PSQPALTGVIVFTSTPDKVSNKYYL 102 (199)
Q Consensus 33 gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~--~~Y~~~~v~v~~~~~-------~~~~~~~~Alvyva~~~~~~n~~y~ 102 (199)
|+.|+|..|+|++ +.++.||..|. ..|.+..++|...+. ......+.|.+|+.+. -++.+.
T Consensus 60 g~~V~G~ly~v~~------~~l~~LD~~Eg~~~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~---~~~~~~ 129 (153)
T 3jud_A 60 GRLVEGEVYAVDE------RMLRFLDDFQSCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRAT---FPPEWA 129 (153)
T ss_dssp SBCCEEEEEEECH------HHHHHHHHHTTTTTSCEEEEEEEEEEC------CCSCCCCEEEEEEEEBCC---CCGGGG
T ss_pred CCEEEEEEEEECH------HHHHHHHHhcCCCCceEEEEEEEEeeccccccccccCCCCEEEEEEEEcCC---CCcccc
Confidence 5689999999973 68999999998 589999999986420 0012257899999987 555554
No 6
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=96.79 E-value=0.003 Score=50.50 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=44.8
Q ss_pred eEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhc--CCcceEEEEEEc-------CCCCCCCcceeEEEEEEcc
Q 029066 26 CTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC--EYDSKTLVDFYR-------EGEPSQPALTGVIVFTSTP 93 (199)
Q Consensus 26 ltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~--~~Y~~~~v~v~~-------~~~~~~~~~~~Alvyva~~ 93 (199)
++.++.+|..++|..|.|++ +.|+.||.-|. ..|.+..+.|.. +++. .+.|.+|+.+.
T Consensus 65 ~~i~p~~g~~V~Gevy~v~~------~~L~~LD~~Eg~p~~Y~R~~v~V~~~~~~~~~~~g~----~v~A~vYv~~~ 131 (161)
T 1vkb_A 65 LLYLPGKGHCVTGEIYEVDE------QMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPGD----SVQCFVYTTAT 131 (161)
T ss_dssp EESCTTSSBCCEEEEEEECH------HHHHHHHHHTTTTTSCEEEEEEEEEEEEC----CCS----EEEEEEEEESC
T ss_pred eEeecCCCCEEEEEEEEECH------HHHHHHHHhcCCCCceEEEEEEEEecccccccCCCC----EEEEEEEEcCC
Confidence 45556566789999999983 68999999996 489999998876 3332 36899999875
No 7
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=95.05 E-value=0.042 Score=41.68 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=45.8
Q ss_pred cceeeeeeecCccccCCCCCCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhc--CCcceEEEEEEcCCCCC
Q 029066 2 IYCFVSFALACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC--EYDSKTLVDFYREGEPS 79 (199)
Q Consensus 2 i~G~~rF~q~S~dhRGTpe~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~--~~Y~~~~v~v~~~~~~~ 79 (199)
+.||+.|.. | ..||.|-+ ++ .++|..|+|++ +.++.||.=|. ..|.+..+.+ ++
T Consensus 30 l~gy~L~~~------g--~yP~lv~~----~g-~V~Gevy~v~~------~~l~~LD~~Eg~~~~Y~R~~v~~--~~--- 85 (121)
T 1xhs_A 30 IDNYQLYSL------G--HYPGAVPG----NG-TVHGEVYRIDN------ATLAELDALRTRGGEYARQLIQT--PY--- 85 (121)
T ss_dssp EEEEEEEEC------S--SSEEEEEE----EE-EEEEEEEECCH------HHHHHHHHHHSTTSCEEEEEEEE--TT---
T ss_pred EeCcEEEEe------c--CCCeEEec----CC-EEEEEEEEeCH------HHHHHHHHhcCCCCCEEEEEEEc--CC---
Confidence 567774432 2 45886632 24 89999999973 68999999997 4788888874 22
Q ss_pred CCcceeEEEEEEcc
Q 029066 80 QPALTGVIVFTSTP 93 (199)
Q Consensus 80 ~~~~~~Alvyva~~ 93 (199)
..|.+|+.++
T Consensus 86 ----g~a~vY~~~~ 95 (121)
T 1xhs_A 86 ----GSAWMYVYQR 95 (121)
T ss_dssp ----EEEEEEEECS
T ss_pred ----CEEEEEEECC
Confidence 2689999875
No 8
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=92.43 E-value=0.12 Score=39.30 Aligned_cols=53 Identities=11% Similarity=-0.094 Sum_probs=38.1
Q ss_pred CCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhh-cCCcceEEEEEEcCCCCCCCcceeEEEEEEcc
Q 029066 21 HPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRE-CEYDSKTLVDFYREGEPSQPALTGVIVFTSTP 93 (199)
Q Consensus 21 ~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE-~~~Y~~~~v~v~~~~~~~~~~~~~Alvyva~~ 93 (199)
.|+.|.+ +| .|+|..|.|++ +.++.||..| -..|.+..| .+.++ .|.+|+.++
T Consensus 47 yP~lv~~----~g-~V~Gev~~v~~------~~l~~LD~~E~~~~Y~R~~V--~~~~g-------~A~vY~~~~ 100 (124)
T 1v30_A 47 LPYAVKG----KG-KLKVEVYEVDK------ETFERINEIEIGTGYRLVEV--STKFG-------KAFLWEWGS 100 (124)
T ss_dssp SEEEEEE----EE-EEEEEEEEECH------HHHHHHTTCGGGGGEEEEEE--CCTTS-------CEEEEEECS
T ss_pred CCEEEec----CC-EEEEEEEEECH------HHHHHhhhccCCCCeEEEEE--EcCCC-------EEEEEEeCC
Confidence 7876632 24 49999999973 7899999999 557877664 33332 289999865
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=85.82 E-value=1.1 Score=38.09 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=40.8
Q ss_pred CCceeeEEeeCCCCeeEEEEEEeeCCCccHHHHHHHHHHhhc--CCcceEEEEEEcCCCCCCCcceeEEEEEEcc
Q 029066 21 HPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC--EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 93 (199)
Q Consensus 21 ~PGrVltL~~~~gg~c~GvAyri~~~~~~~e~vl~~Ld~RE~--~~Y~~~~v~v~~~~~~~~~~~~~Alvyva~~ 93 (199)
.||+|. .+..++.+.|-.|.|++ + .||.=|. ..|.+..++|.++++ .+.|.+|+.++
T Consensus 43 ~P~lv~--~~~~~~~V~Gev~~v~~------~---~LD~~E~~~~~Y~R~~v~v~~~~g-----~~~a~vY~~~~ 101 (285)
T 2qik_A 43 GPTVVF--NDEDEGYIYGEVYEADE------L---CIHKLDQFFQGYHKQTVFVETDVG-----IKIALIYFMNK 101 (285)
T ss_dssp CEEEEC--CTTCCSEEEEEEEEECH------H---HHHHHHHHSTTCEEEEEEEEETTE-----EEEEEEEECC-
T ss_pred CCeEEE--ccCCCCEEEEEEEEcCH------H---HhHHhcCCCCceeEEEEEEEcCCC-----EEEEEEEEecc
Confidence 376552 22246789999999983 1 6666665 589999998887654 25799999876
No 10
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=69.24 E-value=3.5 Score=32.74 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 029066 120 PCGNNRDYLFKLEKAMFDIGHEDDYIIELANE 151 (199)
Q Consensus 120 ~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~ 151 (199)
+..++.+||..+++++++.|+.+.+++.|.+.
T Consensus 132 ~~~ps~~Yl~~i~~g~~~~gl~~~y~~~L~~~ 163 (188)
T 3cry_A 132 SAPPSPQYKKIICMGAKENGLPLEYQEKLKAI 163 (188)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred CCCChHHHHHHHHHHHHHhCcCHHHHHHHhcc
Confidence 46799999999999999999999999998864
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=41.97 E-value=41 Score=29.39 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=43.6
Q ss_pred CCHHHHHHHHhhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 029066 105 APLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEV 152 (199)
Q Consensus 105 ~~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~V 152 (199)
.+.++++++|.++--..+.+.+-|-+..++|+++|+.+..+..|..+.
T Consensus 90 ls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~ 137 (335)
T 4fp9_B 90 LNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCC 137 (335)
T ss_dssp CCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHC
T ss_pred CCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 789999999999999999999999999999999999998887776644
No 12
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=25.92 E-value=75 Score=25.93 Aligned_cols=41 Identities=7% Similarity=-0.139 Sum_probs=22.2
Q ss_pred CHHHHHHHHhhccCCCCCcHHHHHHHHHHH-HhCCCCChhHH
Q 029066 106 PLEEMARQIATAVGPCGNNRDYLFKLEKAM-FDIGHEDDYII 146 (199)
Q Consensus 106 ~~e~iA~~Ia~A~G~sG~N~EYL~~L~~~L-r~lgi~D~~L~ 146 (199)
+.++++++|.+.-...+.+.|-+....+.| +++|+.+..+.
T Consensus 89 s~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~ 130 (270)
T 3m66_A 89 SKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTR 130 (270)
T ss_dssp CHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 445555555555555555555555555555 34555555443
No 13
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=24.76 E-value=64 Score=23.12 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCCCCCCCCHHHHHHHHh----hccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 029066 98 NKYYLGPAPLEEMARQIA----TAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVR 153 (199)
Q Consensus 98 n~~y~G~~~~e~iA~~Ia----~A~G~sG~N~EYL~~L~~~Lr~lgi~D~~L~~L~~~Vr 153 (199)
-|.|.|..+++++-..|. +.. ||+.+=+..++..|.++ |.+..|+.+...++
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~~~~---~P~~~DV~~l~~yL~~l-v~~~~lek~~~vlk 57 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWITTIS---DPMEEDILQVVRYCTDL-IEEKDLEKLDLVIK 57 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHHHCS---SCCHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHH-hhccCHHHHHHHHH
Confidence 488999999988877654 344 56666666666666665 45677777766655
No 14
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=21.69 E-value=1.6e+02 Score=24.46 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHHhccc--cccccccccccCCCCCCCCC--CCCCCceeeccC
Q 029066 125 RDYLFKLEKAMFDIGHE-DDYIIELANEVRKELGTA--EKGILKERKLVGSSSRMPLT--KSHIPTLQLGLR 191 (199)
Q Consensus 125 ~EYL~~L~~~Lr~lgi~-D~~L~~L~~~Vr~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 191 (199)
.+-+.||.++++.+++. .....+|.+.+++.+... ..+.++..-..|..++.... .+..|++-+...
T Consensus 45 ~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~ 116 (277)
T 3daa_A 45 NEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116 (277)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTCCSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEE
Confidence 56788999999999987 334566666666655431 23445554445666542221 344566655443
No 15
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=20.58 E-value=64 Score=24.49 Aligned_cols=42 Identities=10% Similarity=0.302 Sum_probs=29.5
Q ss_pred cceeeeeeecCccccCCCCCCceeeEEeeCCCCee-EEEEEEee
Q 029066 2 IYCFVSFALACIDHRGTPQHPARTCTLEKSQETIC-WGVAYCVR 44 (199)
Q Consensus 2 i~G~~rF~q~S~dhRGTpe~PGrVltL~~~~gg~c-~GvAyri~ 44 (199)
+.||+-|.++|.. +.+...---|+++.+-+|..| |-+.|.=.
T Consensus 59 ldgykifnmgsnn-wasvsrgntvlgvsefdgqtckwsieysgn 101 (150)
T 2y9w_C 59 LDGYKIFNMGSNN-WASVSRGNTVLGVSEFDGQTCKWSIEYSGN 101 (150)
T ss_dssp TTEEEEEETTTCC-EEEECTTSBEEEESSCCTTTSCBEEEECSS
T ss_pred ccceeEEeccCCc-eeeeecCcEEEeeeecCCceEEEEEEEcCC
Confidence 5799999998864 333344446999988777766 77777544
No 16
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=20.44 E-value=71 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=33.1
Q ss_pred cCCCCCcHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHHhcccccccc
Q 029066 118 VGPCGNNRDYLFKLEKAMFDIG-HEDDYIIELANEVRKELGTAEKGIL 164 (199)
Q Consensus 118 ~G~sG~N~EYL~~L~~~Lr~lg-i~D~~L~~L~~~Vr~~~~~~~~~~~ 164 (199)
.||..|=+||+.|+...||... ..+..-+-.+..+-+.-+-.|+.|+
T Consensus 5 QGPkEPFrDyVdRf~kalraeqa~~~vK~wmt~tLlvQNANPdCk~iL 52 (96)
T 1eoq_A 5 QGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLI 52 (96)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHhhccHhHhhhhHHHHHHHhcCHHHHHHH
Confidence 4899999999999999999864 4455555555655554455566554
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.02 E-value=54 Score=21.17 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHhCCCCChh--HHHHH
Q 029066 124 NRDYLFKLEKAMFDIGHEDDY--IIELA 149 (199)
Q Consensus 124 N~EYL~~L~~~Lr~lgi~D~~--L~~L~ 149 (199)
-..| -.-.+.|++||+.|.+ +.+|.
T Consensus 6 ~~~~-~~~l~~L~~MGF~d~~~n~~AL~ 32 (54)
T 2dah_A 6 SGHF-QVQLEQLRSMGFLNREANLQALI 32 (54)
T ss_dssp CCSS-HHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHcCCCcHHHHHHHHH
Confidence 3345 3345889999998864 45554
Done!