BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029067
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp
Domain And Human Osbp Ffat Motif
Length = 130
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
DP T L F V + + ++N S V FK +TTAP+ +RP GI+ PG ++ +
Sbjct: 13 DPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVS 72
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
V ++P + + ++KSK KF + ++
Sbjct: 73 V--MLQPFDYDP---NEKSKHKFMVQTI 95
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp-
Associated Proteina
Length = 147
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
DP + L F V + + ++N S V FK +TTAP+ +RP GI+ PG I T
Sbjct: 18 DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGS--IVT 75
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
V ++P + + ++KSK KF + ++
Sbjct: 76 VSVMLQPFDYD---PNEKSKHKFMVQTI 100
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|B Chain B, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|C Chain C, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|D Chain D, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|E Chain E, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
pdb|1Z9O|F Chain F, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp
Homology Domain In Complex With The Rat Orp1 Ffat Motif
Length = 128
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
DP + L F V + + ++N S V FK +TTAP+ +RP G++ PG I T
Sbjct: 14 DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
V ++P + + ++KSK KF + ++
Sbjct: 72 VSVMLQPFDYD---PNEKSKHKFMVQTI 96
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp
Homology Domain
Length = 128
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIAT 151
DP + L F V + + ++N S V FK +TTAP+ +RP G++ PG I T
Sbjct: 14 DPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS--IVT 71
Query: 152 VFKFVEPPENNERPTDQKSKVKFKIMSL 179
V ++P + + ++KSK KF + ++
Sbjct: 72 VSVXLQPFDYD---PNEKSKHKFXVQTI 96
>pdb|1GRW|A Chain A, C. Elegans Major Sperm Protein
pdb|1GRW|B Chain B, C. Elegans Major Sperm Protein
pdb|1GRW|C Chain C, C. Elegans Major Sperm Protein
pdb|1GRW|D Chain D, C. Elegans Major Sperm Protein
Length = 126
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 93 PSTKLFF--PYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIA 150
P TK+ F PY+ I + N+S + + +TT K + PP G+L P E+++
Sbjct: 13 PGTKIVFNAPYDDKHTYH--IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLL 70
Query: 151 TV----FKFVEPPENNERPT 166
V F F + NN+R T
Sbjct: 71 AVSCDAFAFGQEDTNNDRIT 90
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain
pdb|3IKK|B Chain B, Crystal Structure Analysis Of Msp Domain
Length = 127
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 107 VRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPT 166
V + + + N + +V FK +TTAP+ +RP GI+ G S+ +V ++P + +
Sbjct: 28 VTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSV--MLQPFDYD---P 82
Query: 167 DQKSKVKFKIMSL 179
++KSK KF + S+
Sbjct: 83 NEKSKHKFMVQSM 95
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna
6030424e15
Length = 152
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 92 DPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
P+ +L+F + ++ I + N +K+ VAFK +TTAP+ ++P PG S+
Sbjct: 22 SPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78
>pdb|1MSP|A Chain A, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|1MSP|B Chain B, Major Sperm Protein, Alpha Isoform (Recombinant), Ph 4.6
pdb|3MSP|A Chain A, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
pdb|3MSP|B Chain B, Motile Major Sperm Protein (Msp) Of Ascaris Suum, Nmr, 20
Structures
Length = 126
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 93 PSTKLFF--PYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIA 150
PS K+ F PY+ I I N + + +TT + + PP G+L P E ++
Sbjct: 13 PSQKIVFNAPYDDKHTYH--IKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLM 70
Query: 151 TV----FKFVEPPENNERPT 166
V F NN+R T
Sbjct: 71 AVSCDTFNAATEDLNNDRIT 90
>pdb|2MSP|A Chain A, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|B Chain B, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|C Chain C, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|D Chain D, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|E Chain E, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|F Chain F, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|G Chain G, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
pdb|2MSP|H Chain H, Major Sperm Protein, Beta Isoform, Engineered C59sT90C
Mutant, Putative Subfilament Structure, Ph 8.5
Length = 126
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 93 PSTKLFF--PYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIA 150
P +K+ F PY+ I I N + + +TT + + PP G+L P E ++
Sbjct: 13 PGSKIVFNAPYDDKHTYH--IKITNAGGRRIGWAIKTTNMRRLGVDPPSGVLDPSEKVLM 70
Query: 151 TV----FKFVEPPENNER 164
V F NN+R
Sbjct: 71 AVSCDTFNAATEDLNNDR 88
>pdb|2BVU|A Chain A, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|B Chain B, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|C Chain C, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
pdb|2BVU|D Chain D, D83r Mutant Of Asaris Suum Major Sperm Protein (Msp)
Length = 126
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 93 PSTKLFF--PYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIA 150
PS K+ F PY+ I I N + + +TT + + PP G+L P E ++
Sbjct: 13 PSQKIVFNAPYDDKHTYH--IKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLM 70
Query: 151 TV----FKFVEPPENNERPT 166
V F NN+R T
Sbjct: 71 AVSCDTFNAATERLNNDRIT 90
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 92 DPSTKLFFPYEPGK--QVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
DPS L G+ Q+RS + N +H + + C + PP I AP E++
Sbjct: 9 DPSRDLVRQKSRGRKNQMRSLVGRSNQHITHQSRPYTNEYASPCQITPPQEIKAPKENV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,113,673
Number of Sequences: 62578
Number of extensions: 122469
Number of successful extensions: 219
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 15
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)