BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029067
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42
PE=1 SV=1
Length = 295
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/223 (55%), Positives = 147/223 (65%), Gaps = 45/223 (20%)
Query: 1 MAVDEKKSGAEGKV-WGLCKMPFWQSS---NGSSSSSSS--------------------- 35
M + E+K ++GK WG K+PF SS N +SS+++S
Sbjct: 1 MTMTEEKPTSDGKGGWGFFKIPFRNSSGHRNAASSAATSPFPSGASSSSTSSHLHNHHQH 60
Query: 36 -------MQNNNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRR 88
+ YN + + S QNQ S +VSS+AKS LPT+RR
Sbjct: 61 HHQHHHQHHHQLGYNGPHGDGSG-----QNQHP--------TPSPSVSSVAKSFLPTKRR 107
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L+LDPS KL+FPYEPGKQVRSAI IKNTSKSHVAFKFQTTAPKSC+MRPPG ILAPGE++
Sbjct: 108 LKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGETI 167
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEMDYVPEL 191
IATVFKFVEPPENNE+P DQ+S+VKFKIMSLKVKG MDYVPEL
Sbjct: 168 IATVFKFVEPPENNEKPMDQRSRVKFKIMSLKVKGPMDYVPEL 210
>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43
PE=2 SV=1
Length = 287
Score = 213 bits (543), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/202 (56%), Positives = 146/202 (72%), Gaps = 11/202 (5%)
Query: 1 MAVDEKKSGAEGKVWGLCKMPFWQSSNGSSSSSSSMQNNNNYNSSNNNNSSSHVYQQNQS 60
MA+ E KS ++G+ WG K+PF S++ + S+SSS + +S +++ + + Q++
Sbjct: 1 MALTEDKSDSDGRRWGKFKLPFRNSNSQAPSASSSSSMATSSSSVTSSHLNQNYIHQSRH 60
Query: 61 QQVMG-----------RSSVVNSSNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRS 109
Q G S ++SS+A+SLLPT+RRL+LDPS KL+FPYEPGKQVRS
Sbjct: 61 FQYHGPPVVEGLGQNHHQSAATIPSMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRS 120
Query: 110 AISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQK 169
AI IKNTSKSHVAFKFQTT PKSC+MRP G ILAPGE +IATVFKFVEPPENNE+P +QK
Sbjct: 121 AIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIATVFKFVEPPENNEKPMEQK 180
Query: 170 SKVKFKIMSLKVKGEMDYVPEL 191
S VKFKIMSLK+K DY+PEL
Sbjct: 181 SGVKFKIMSLKMKVPTDYMPEL 202
>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41
PE=2 SV=1
Length = 266
Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 115/180 (63%), Positives = 136/180 (75%), Gaps = 18/180 (10%)
Query: 14 VWGLCKMPFWQSSNGSSSSSSSMQN-NNNYNSSNNNNSSSHVYQQNQSQQVMGRSSVVNS 72
++ LC PFWQ S++SSSS QN N NY S + N +N + + +
Sbjct: 17 LFRLC--PFWQRR--STTSSSSTQNPNQNYRSRHGN--------RNTDISAVSKPPL--- 61
Query: 73 SNVSSMAKSLLPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKS 132
+SS+A+SLLP RRRLRLDPS+ L+FPYEPGKQVRSAI +KNTSKSH AFKFQTTAPKS
Sbjct: 62 -TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPKS 120
Query: 133 CYMRPPGGILAPGESLIATVFKFVEPPENNER-PTDQKSKVKFKIMSLKVKGEMDYVPEL 191
CYMRPPGG+LAPGES+ ATVFKFVE PENNE+ P +QKSKVKFKIMSLKVK ++YVPEL
Sbjct: 121 CYMRPPGGVLAPGESVFATVFKFVEHPENNEKQPLNQKSKVKFKIMSLKVKPGVEYVPEL 180
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 95 TKLFFPYEPGKQVRSAISIKN-TSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVF 153
T+L FP+E KQ ++ + N T+ VAFK +TT P+ +RP G++ PG+S TV
Sbjct: 12 TELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVTVT 71
Query: 154 KFVEPPENNERPTDQKSKVKFKIMSLKV 181
+ E P D + K KF + ++ V
Sbjct: 72 MQAQ----KEAPLDMQCKDKFLVQTVVV 95
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22
PE=1 SV=1
Length = 386
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L + P T L F + KQ + + NT+ +VAFK +TT+PK +RP G++AP +
Sbjct: 6 LDIQPRT-LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64
Query: 149 IATVF--KFVEPPENNERPTDQKSKVKFKIMSLKVKGE 184
TV F EP P D K KF I S V E
Sbjct: 65 EFTVIMQAFKEP------PPDMVCKDKFLIQSTAVSAE 96
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21
PE=2 SV=1
Length = 220
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 96 KLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKF 155
+L F +E KQ + + N ++++VAFK +TT+PK ++RP G++ P +S I V
Sbjct: 16 ELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQ 75
Query: 156 VEPPENNERPTDQKSKVKFKIMSLKV--KGEMDYVPE 190
+ E P D + K KF + S V ++D +P+
Sbjct: 76 AQ----REYPPDMQCKDKFLLQSTIVPPHTDVDELPQ 108
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12
PE=1 SV=1
Length = 239
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L +DP L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP G++ P S
Sbjct: 6 LTIDP-VDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
V + E P D + K KF + +
Sbjct: 65 EVLVTMQAQ----KEAPADLQCKDKFLLQCV 91
>sp|Q0VCY1|VAPA_BOVIN Vesicle-associated membrane protein-associated protein A OS=Bos
taurus GN=VAPA PE=2 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L LDP T L F V + + ++N S V FK +TTAP+ +RP GI+ PG L
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPG--L 72
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
TV ++P + + ++KSK KF + ++
Sbjct: 73 TVTVSVMLQPFDYD---PNEKSKHKFMVQTI 100
>sp|Q5R601|VAPA_PONAB Vesicle-associated membrane protein-associated protein A OS=Pongo
abelii GN=VAPA PE=2 SV=2
Length = 249
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L LDP T L F V + + ++N S V FK +TTAP+ +RP GI+ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + ++
Sbjct: 75 TVSV--MLQPFDYD---PNEKSKHKFMVQTI 100
>sp|Q9P0L0|VAPA_HUMAN Vesicle-associated membrane protein-associated protein A OS=Homo
sapiens GN=VAPA PE=1 SV=3
Length = 249
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L LDP T L F V + + ++N S V FK +TTAP+ +RP GI+ PG ++
Sbjct: 15 LVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTV 74
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + ++
Sbjct: 75 TVSV--MLQPFDYD---PNEKSKHKFMVQTI 100
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11
PE=1 SV=1
Length = 256
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 97 LFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFV 156
L FP+E KQ+ ++ + N + ++VAFK +TT PK +RP G++ P +T V
Sbjct: 30 LQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPR----STCEVLV 85
Query: 157 EPPENNERPTDQKSKVKF 174
E P+D + K KF
Sbjct: 86 TMQAQKEAPSDMQCKDKF 103
>sp|Q9WV55|VAPA_MOUSE Vesicle-associated membrane protein-associated protein A OS=Mus
musculus GN=Vapa PE=1 SV=2
Length = 249
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L LDP + L F V + + ++N S V FK +TTAP+ +RP GI+ PG
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGS-- 72
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
I TV ++P + + ++KSK KF + ++
Sbjct: 73 IVTVSVMLQPFDYD---PNEKSKHKFMVQTI 100
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2
Length = 319
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
+ L+ + + FP + V+ + ++NT+ + FK +TTAPK +RP GG + E+
Sbjct: 1 MALECDSTIVFPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI---EAN 57
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEM 185
A + + P ++E K + KF + S ++K E+
Sbjct: 58 SAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPEL 94
>sp|Q9Z270|VAPA_RAT Vesicle-associated membrane protein-associated protein A OS=Rattus
norvegicus GN=Vapa PE=1 SV=3
Length = 249
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L LDP + L F V + + ++N S V FK +TTAP+ +RP G++ PG
Sbjct: 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGS-- 72
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
I TV ++P + + ++KSK KF + ++
Sbjct: 73 IVTVSVMLQPFDYD---PNEKSKHKFMVQTI 100
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SCS2 PE=1 SV=3
Length = 244
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 112 SIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL-IATVFKFVEPPENNERPTDQKS 170
SI N S +AFK +TTAPK +RP ++APGE++ + +F + E D K
Sbjct: 26 SISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGETIQVQVIFLGL----TEEPAADFKC 81
Query: 171 KVKFKIMSL 179
+ KF +++L
Sbjct: 82 RDKFLVITL 90
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGES 147
L +DP + FP E K+V ++++ N ++++VAFK +TT K Y+RP G++ P S
Sbjct: 177 LIIDP-VDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS 234
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 99 FPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL-IATVFKFVE 157
FP E KQ ++++ N + ++VAFK QTT PK ++P G++ P S + V + ++
Sbjct: 16 FPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQALK 75
Query: 158 PPENNERPTDQKSKVKFKIMSLKVK-GEMD 186
E P D++ K K V+ G MD
Sbjct: 76 -----EAPADRQCKDKLLFQCKVVEPGTMD 100
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31
PE=3 SV=1
Length = 149
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L ++P L FP+E KQ+ ++ + N + ++VAFK +TT + +RP G++ P
Sbjct: 7 LEIEP-MYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPK--- 62
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+T V E P+D +S KF I S+
Sbjct: 63 -STCKVLVTMQAQKEVPSDMQSFEKFMIQSV 92
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein
OS=Aplysia californica PE=2 SV=1
Length = 260
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L L+P+ +L F V + + + N + + FK +TTAPK +RP GIL P S+
Sbjct: 8 LILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSI 67
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
V ++P N P ++K+K KF + S+
Sbjct: 68 AVAV--MLQP--FNYDP-NEKNKHKFMVQSM 93
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos
taurus GN=VAPB PE=2 SV=1
Length = 243
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L L+P +L F V + + + N + +V FK +TTAP+ +RP GI+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + S+
Sbjct: 68 NVSV--MLQPFDYD---PNEKSKHKFMVQSM 93
>sp|Q9Z269|VAPB_RAT Vesicle-associated membrane protein-associated protein B OS=Rattus
norvegicus GN=Vapb PE=1 SV=3
Length = 243
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L L+P +L F V + + + N + +V FK +TTAP+ +RP G++ G SL
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASL 67
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + S+
Sbjct: 68 NVSV--MLQPFDYD---PNEKSKHKFMVQSM 93
>sp|O95292|VAPB_HUMAN Vesicle-associated membrane protein-associated protein B/C OS=Homo
sapiens GN=VAPB PE=1 SV=3
Length = 243
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L L+P +L F V + + + N + +V FK +TTAP+ +RP GI+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + S+
Sbjct: 68 NVSV--MLQPFDYD---PNEKSKHKFMVQSM 93
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus
scrofa GN=VAPB PE=3 SV=1
Length = 243
Score = 37.7 bits (86), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESL 148
L L+P +L F V + + + N + +V FK +TTAP+ +RP GI+ G S+
Sbjct: 8 LSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASI 67
Query: 149 IATVFKFVEPPENNERPTDQKSKVKFKIMSL 179
+V ++P + + ++KSK KF + S+
Sbjct: 68 NVSV--MLQPFDYD---PNEKSKHKFMVQSM 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.123 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,351,457
Number of Sequences: 539616
Number of extensions: 2726546
Number of successful extensions: 85506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 18854
Number of HSP's gapped (non-prelim): 32166
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)