Query 029067
Match_columns 199
No_of_seqs 153 out of 582
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z9l_A Vesicle-associated memb 100.0 1.9E-31 6.5E-36 208.3 14.3 108 85-197 7-114 (128)
2 2cri_A Vesicle-associated memb 100.0 1.9E-31 6.4E-36 213.6 14.0 108 85-197 11-118 (147)
3 1wic_A Hypothetical protein ri 100.0 3.6E-30 1.2E-34 207.9 12.2 105 85-197 15-123 (152)
4 1msp_A MSP, major sperm protei 100.0 1.3E-29 4.6E-34 198.6 13.2 104 86-194 6-111 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 4.5E-29 1.5E-33 192.3 11.6 96 89-198 3-98 (109)
6 1m1s_A WR4; structural genomic 100.0 9.3E-28 3.2E-32 187.4 12.8 96 88-197 10-105 (116)
7 2ys4_A Hydrocephalus-inducing 98.2 6.7E-06 2.3E-10 62.4 9.0 79 88-178 25-104 (122)
8 2e6j_A Hydin protein; PAPD, st 97.8 5.8E-05 2E-09 55.5 7.5 68 86-154 7-78 (112)
9 3qbt_B Inositol polyphosphate 97.8 0.00014 4.9E-09 57.1 9.9 69 86-155 24-99 (140)
10 3qis_A Inositol polyphosphate 97.4 0.00082 2.8E-08 60.1 9.6 72 85-157 26-104 (366)
11 2qsv_A Uncharacterized protein 96.1 0.021 7E-07 47.2 8.4 65 88-154 2-67 (220)
12 2qsv_A Uncharacterized protein 95.6 0.064 2.2E-06 44.2 9.1 66 86-154 117-183 (220)
13 3q48_A Chaperone CUPB2; IG fol 89.4 2.5 8.6E-05 36.0 9.8 63 88-154 29-101 (257)
14 2co7_B SAFB chaperone, putativ 85.8 6.6 0.00023 32.5 10.1 63 88-154 13-80 (221)
15 2xg5_A PAPD, chaperone protein 83.8 13 0.00044 30.7 11.0 62 89-154 2-71 (218)
16 4djm_A DRAB; chaperone, PILI; 82.3 8.9 0.0003 32.3 9.5 63 88-154 23-90 (239)
17 1l4i_A SFAE protein; periplasm 80.9 17 0.00058 29.6 10.6 62 89-154 2-70 (206)
18 1yew_A Particulate methane mon 80.0 11 0.00037 34.3 9.7 70 84-155 245-335 (382)
19 1klf_A FIMC chaperone, chapero 79.1 20 0.0007 29.1 10.5 62 89-154 2-69 (205)
20 2g30_A AP-2 complex subunit be 77.6 10 0.00035 32.3 8.4 64 86-155 41-110 (258)
21 2r39_A FIXG-related protein; s 75.7 8.9 0.0003 28.3 6.7 49 107-155 33-82 (118)
22 4ay0_A Chaperone protein CAF1M 73.5 37 0.0013 28.0 11.4 63 88-154 13-82 (218)
23 2lll_A Lamin-B2; immunoglobuli 72.6 6.8 0.00023 30.7 5.6 41 110-150 35-81 (139)
24 3gfu_C Chaperone protein FAEE; 72.5 32 0.0011 28.7 10.1 62 89-154 2-70 (224)
25 3rfr_A PMOB; membrane, oxidore 71.4 11 0.00038 34.7 7.4 66 86-155 281-367 (419)
26 1gyu_A Adapter-related protein 71.4 5.7 0.00019 30.9 4.9 43 105-147 47-93 (140)
27 3jt0_A Lamin-B1; structural ge 58.0 25 0.00085 27.6 6.3 41 110-150 39-84 (144)
28 3idu_A Uncharacterized protein 50.3 34 0.0012 26.0 5.7 51 103-154 31-82 (127)
29 3hs8_A Adaptor protein complex 46.7 56 0.0019 27.9 7.2 57 104-160 67-130 (273)
30 2xzz_A Protein-glutamine gamma 43.1 83 0.0028 22.8 6.7 47 104-154 19-71 (102)
31 2npi_A Protein CLP1; CLP1-PCF1 38.8 11 0.00039 34.2 1.7 46 86-135 38-83 (460)
32 1uh6_A Ubiquitin-like 5; beta- 38.3 23 0.00078 26.1 2.9 22 74-95 28-49 (100)
33 2fvv_A Diphosphoinositol polyp 34.1 71 0.0024 24.9 5.5 36 110-147 45-80 (194)
34 3hn9_A Lamin-B1; structural ge 31.8 65 0.0022 24.3 4.7 40 110-150 26-71 (123)
35 3vta_A Cucumisin; subtilisin-l 29.3 1.6E+02 0.0055 27.4 7.9 49 106-154 538-589 (621)
36 3zy7_A AP-1 complex subunit ga 29.0 56 0.0019 24.4 3.9 45 83-127 54-98 (122)
37 3e38_A Two-domain protein cont 29.0 1.5E+02 0.0052 25.8 7.3 66 109-185 270-335 (343)
38 4gio_A Putative lipoprotein; u 27.5 1E+02 0.0035 22.7 5.0 51 104-154 35-91 (107)
39 3zy7_A AP-1 complex subunit ga 25.9 2E+02 0.0069 21.2 9.3 80 105-192 29-121 (122)
40 3isu_A RAS GTPase-activating-l 25.3 18 0.00062 27.8 0.5 41 52-92 2-42 (121)
41 1wm3_A Ubiquitin-like protein 25.3 71 0.0024 21.1 3.5 21 110-130 3-23 (72)
42 3o0l_A Uncharacterized protein 25.0 1.4E+02 0.0046 22.1 5.3 52 103-154 36-94 (112)
43 1iu1_A Gamma1-adaptin; coated 24.1 1.2E+02 0.0041 23.3 5.1 42 105-146 53-98 (146)
44 1iyc_A Scarabaecin; antifungal 24.0 42 0.0014 20.3 1.8 18 6-23 15-34 (36)
45 1yfn_E Sigma-E factor negative 22.6 15 0.00051 22.2 -0.4 7 19-25 11-17 (32)
46 1ifr_A Lamin A/C; immunoglobul 21.5 1.6E+02 0.0054 22.1 5.1 43 110-154 20-68 (121)
47 2vhk_A Thaumatin-I; kinetics o 21.4 75 0.0026 26.4 3.5 40 110-153 2-42 (206)
48 4hci_A Cupredoxin 1; structura 21.2 2E+02 0.0069 19.6 6.3 52 90-154 24-75 (100)
49 1qhq_A Protein (auracyanin); e 20.9 76 0.0026 23.3 3.2 16 139-154 97-112 (140)
50 2pi2_E Replication protein A 1 20.9 2.1E+02 0.0073 22.0 5.9 50 87-139 29-78 (142)
51 2iaa_C Azurin; quinoprotein, t 20.6 1.1E+02 0.0037 22.9 4.1 63 88-154 11-98 (128)
52 1gyu_A Adapter-related protein 20.5 1E+02 0.0035 23.6 4.0 44 84-127 73-116 (140)
53 2io0_B Small ubiquitin-related 20.0 97 0.0033 21.8 3.5 22 109-130 6-27 (91)
No 1
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=99.97 E-value=1.9e-31 Score=208.31 Aligned_cols=108 Identities=28% Similarity=0.448 Sum_probs=98.2
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067 85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER 164 (199)
Q Consensus 85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~ 164 (199)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|++ +|...+
T Consensus 7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~---~~~~~~- 82 (128)
T 1z9l_A 7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVML---QPFDYD- 82 (128)
T ss_dssp CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEE---CcCcCC-
Confidence 4568999998899999999999999999999999999999999999999999999999999999999999 675433
Q ss_pred CCCCCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067 165 PTDQKSKVKFKIMSLKVKGEMDYVPELVCIASP 197 (199)
Q Consensus 165 p~~~k~kDKFLVqSv~v~~~~d~~~elFk~a~P 197 (199)
++.+|+|||+||++.++++.+++.++|+++++
T Consensus 83 -p~~~~~dkF~V~s~~~~~~~~~~~~~w~~~~~ 114 (128)
T 1z9l_A 83 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKP 114 (128)
T ss_dssp -TTCCCCCEEEEEEEECCTTCSCHHHHHHSCCG
T ss_pred -cccccCCEEEEEEEECCCCcchHHHHhhcCCC
Confidence 34689999999999999988667999998764
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=1.9e-31 Score=213.65 Aligned_cols=108 Identities=29% Similarity=0.450 Sum_probs=98.5
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067 85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER 164 (199)
Q Consensus 85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~ 164 (199)
.+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|+| +|...+
T Consensus 11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l---~~~~~~- 86 (147)
T 2cri_A 11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVML---QPFDYD- 86 (147)
T ss_dssp CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEE---CCCCCC-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEE---CCCcCC-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999999 675433
Q ss_pred CCCCCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067 165 PTDQKSKVKFKIMSLKVKGEMDYVPELVCIASP 197 (199)
Q Consensus 165 p~~~k~kDKFLVqSv~v~~~~d~~~elFk~a~P 197 (199)
++++|+|||+||++.++++.++..++|++.++
T Consensus 87 -p~~~~kDKFlVqs~~~~~~~~d~~~~wk~~~~ 118 (147)
T 2cri_A 87 -PNEKSKHKFMVQTIFAPPNISDMEAVWKEAKP 118 (147)
T ss_dssp -TTCCSCCCEEEEEEECCTTCCCHHHHHHHSCT
T ss_pred -ccccCCCEEEEEEEEcCCCcccHHHHhhcCCC
Confidence 34789999999999999887667999998765
No 3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=99.97 E-value=3.6e-30 Score=207.95 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=94.1
Q ss_pred CCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCC
Q 029067 85 TRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNER 164 (199)
Q Consensus 85 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~ 164 (199)
.+++|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||+.|+|+||+++.|.|+| ++.. +
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~l---q~~~-~- 89 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSP---HGGL-T- 89 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEE---CSSS-C-
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEe---cCcc-c-
Confidence 4678999998899999999999999999999999999999999999999999999999999999999999 6642 2
Q ss_pred CCCCCCCceEEEEEEEeC--CCC--CchhhhhcccCC
Q 029067 165 PTDQKSKVKFKIMSLKVK--GEM--DYVPELVCIASP 197 (199)
Q Consensus 165 p~~~k~kDKFLVqSv~v~--~~~--d~~~elFk~a~P 197 (199)
.+++|||+||++.++ ++. +++.++|++..+
T Consensus 90 ---~~~kDKFlVqs~~v~~~~~~~~~d~~~~wk~~~~ 123 (152)
T 1wic_A 90 ---VSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPR 123 (152)
T ss_dssp ---CCSSCCEEEEEEECCSSCCCSHHHHHHHHHHSCT
T ss_pred ---CCCCCEEEEEEEEcCCcCCCChhhHHHHHhccCC
Confidence 379999999999998 443 356899998754
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=99.96 E-value=1.3e-29 Score=198.60 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=91.5
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCC
Q 029067 86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERP 165 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p 165 (199)
...|.|+|.++|.|.+++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|+| ++...++
T Consensus 6 ~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~---q~~~~~~- 81 (126)
T 1msp_A 6 PGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSC---DTFNAAT- 81 (126)
T ss_dssp CCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEE---CCCCGGG-
T ss_pred CCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEe---cCCCCCC-
Confidence 347999999999999999999999999999999999999999999999999999999999999999999 6754432
Q ss_pred CCCCCCceEEEEEEEeCCCC--Cchhhhhcc
Q 029067 166 TDQKSKVKFKIMSLKVKGEM--DYVPELVCI 194 (199)
Q Consensus 166 ~~~k~kDKFLVqSv~v~~~~--d~~~elFk~ 194 (199)
. ...+|||+||++.++++. |+..++|.+
T Consensus 82 ~-~~~kDKf~Vq~~~~p~~~~~~~~~~wf~~ 111 (126)
T 1msp_A 82 E-DLNNDRITIEWTNTPDGAAKQFRREWFQG 111 (126)
T ss_dssp S-CCSSCEEEEEEEECCTTCCSSCCTHHHHS
T ss_pred C-ccCCCEEEEEEEECCCCcchhhhHHhhcC
Confidence 2 345999999999999886 666565544
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=4.5e-29 Score=192.34 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=86.9
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCCC
Q 029067 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQ 168 (199)
Q Consensus 89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~~ 168 (199)
|.|+|. +|.|.++.+ .+.|+|+|+++++||||||||+|++|||||+.|+|+||+++.|.|++ |++ .
T Consensus 3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~---q~~-------~ 68 (109)
T 1row_A 3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITR---TAG-------A 68 (109)
T ss_dssp CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEE---CSC-------C
T ss_pred EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEe---CCC-------C
Confidence 899997 699998743 69999999999999999999999999999999999999999999999 553 2
Q ss_pred CCCceEEEEEEEeCCCCCchhhhhcccCCC
Q 029067 169 KSKVKFKIMSLKVKGEMDYVPELVCIASPL 198 (199)
Q Consensus 169 k~kDKFLVqSv~v~~~~d~~~elFk~a~P~ 198 (199)
.++|||+||++.++++..++.++|++..|.
T Consensus 69 ~~~dKflvq~~~~~~~~~d~~~~fk~~~~~ 98 (109)
T 1row_A 69 PKEDKLVVHFASAPADATDAQAAFVAVAPA 98 (109)
T ss_dssp CEEEEEEEEEEECCTTCSCHHHHHTTCCCC
T ss_pred CCCCEEEEEEEECCCCCCCHHHHhhcCCCC
Confidence 589999999999998876679999998773
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=9.3e-28 Score=187.37 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=86.9
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCC
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTD 167 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~ 167 (199)
++.++|. +|.|+++. ..+.|+|+|+++++||||||||+|++|||||+.|+|+||+++.|.|++ |++
T Consensus 10 ~~~~~p~-~l~F~~~g---g~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~---q~~------- 75 (116)
T 1m1s_A 10 MINVDPP-TGNYPATG---GNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINR---LPG------- 75 (116)
T ss_dssp SEEEESS-EEEECTTC---EEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEE---CSC-------
T ss_pred eeecCCC-eEEEecCC---CEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEe---CCC-------
Confidence 6899996 99999874 389999999999999999999999999999999999999999999999 554
Q ss_pred CCCCceEEEEEEEeCCCCCchhhhhcccCC
Q 029067 168 QKSKVKFKIMSLKVKGEMDYVPELVCIASP 197 (199)
Q Consensus 168 ~k~kDKFLVqSv~v~~~~d~~~elFk~a~P 197 (199)
..++|||+||++.++++..+++++|++..|
T Consensus 76 ~~k~DKflVq~~~~~~d~~d~~~~fk~~~~ 105 (116)
T 1m1s_A 76 PPKEDKIVIQYAEVPAEETDPMAPFKAGAQ 105 (116)
T ss_dssp CSCEEEEEEEEEEECTTCCCTTHHHHTTCC
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHhcCCC
Confidence 157999999999999877667999999876
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=6.7e-06 Score=62.39 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=61.9
Q ss_pred cEEecCCCceEeeCCC-CCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCC
Q 029067 88 RLRLDPSTKLFFPYEP-GKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPT 166 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~-~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~ 166 (199)
.|.+ | +.|.|..-. +...+..|.|+|.++.++.|++++. .-|.|.|..|.|+||+++.|+|+. .|...
T Consensus 25 ~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F---~P~~~---- 93 (122)
T 2ys4_A 25 ILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEF---EPQSV---- 93 (122)
T ss_dssp CCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEE---CCSSS----
T ss_pred EECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEE---EcCCC----
Confidence 4555 5 588886543 6677899999999999999999975 469999999999999999999999 56522
Q ss_pred CCCCCceEEEEE
Q 029067 167 DQKSKVKFKIMS 178 (199)
Q Consensus 167 ~~k~kDKFLVqS 178 (199)
......+.|..
T Consensus 94 -g~~~~~l~v~~ 104 (122)
T 2ys4_A 94 -GDHSGRLIVCY 104 (122)
T ss_dssp -BCCCCBCEEEE
T ss_pred -ccEEEEEEEEE
Confidence 23555555553
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=5.8e-05 Score=55.47 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCcEEecCCCceEeeCC-CCCeeEEEEEEEcCCCCeEEEEEccCCC---CceEecCCcceeCCCCeEEEEEEe
Q 029067 86 RRRLRLDPSTKLFFPYE-PGKQVRSAISIKNTSKSHVAFKFQTTAP---KSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e-~~k~v~s~L~LtN~S~~~VAFKVKTTaP---~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
...+.+++. .|.|-.- .+...+..++|+|+++.++.|++..... ..|.+.|..|.|+||++..|.|++
T Consensus 7 ~P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f 78 (112)
T 2e6j_A 7 GPKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISF 78 (112)
T ss_dssp CCSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEE
T ss_pred CCEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEE
Confidence 356889995 8998653 3667889999999999999999964221 469999999999999999999999
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.80 E-value=0.00014 Score=57.06 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=58.1
Q ss_pred CCcEEecCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEccC------CCCceEecCCcceeCCCCeEEEEEEee
Q 029067 86 RRRLRLDPSTKLFFPY-EPGKQVRSAISIKNTSKSHVAFKFQTT------APKSCYMRPPGGILAPGESLIATVFKF 155 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTT------aP~~Y~VRPn~GiL~Pgesi~I~Vtl~ 155 (199)
...+.|++. +|.|-. .++...+..|+|+|++.-++-|++.-. .+.-+.|.|..|.|.||+++.|.|+++
T Consensus 24 ~P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~ 99 (140)
T 3qbt_B 24 LPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99 (140)
T ss_dssp SCCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEEC
T ss_pred CCceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEE
Confidence 456888885 999974 357788999999999999999998742 234588999999999999999999995
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.36 E-value=0.00082 Score=60.09 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=58.3
Q ss_pred CCCcEEecCCCceEeeC-CCCCeeEEEEEEEcCCCCeEEEEEccCC------CCceEecCCcceeCCCCeEEEEEEeecC
Q 029067 85 TRRRLRLDPSTKLFFPY-EPGKQVRSAISIKNTSKSHVAFKFQTTA------PKSCYMRPPGGILAPGESLIATVFKFVE 157 (199)
Q Consensus 85 ~~~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P~~Y~VRPn~GiL~Pgesi~I~Vtl~~~ 157 (199)
....+.|++. +|.|-. .++...+.+|+|+|++.-++.|++.-.. +.-+.|.|..|.|.||+++.|.|++++.
T Consensus 26 ~~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 26 FLPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp --CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred cCCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 3457889995 999953 4678899999999999999999987432 2226799999999999999999999643
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.15 E-value=0.021 Score=47.18 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=55.5
Q ss_pred cEEecCCCceEeeCCC-CCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 88 RLRLDPSTKLFFPYEP-GKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~-~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
.|++++. .+.|.--. ++.....+.++|+++.++-++.-.. |....+++..+.|+||++..|.|++
T Consensus 2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~ 67 (220)
T 2qsv_A 2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSL 67 (220)
T ss_dssp CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEE
T ss_pred ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEE
Confidence 3899995 99997633 5566779999999999999987543 8888889999999999999999999
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.59 E-value=0.064 Score=44.17 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEE-EEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAF-KFQTTAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAF-KVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
...|.++ . .+.|-.-.++..+..++|+|+++.++.+ +|+++. +...+.+..+.|.||++..|.|++
T Consensus 117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEE
T ss_pred CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEE
Confidence 4568898 5 8998743377888999999999999887 888764 688999999999999999999999
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=89.38 E-value=2.5 Score=36.03 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=46.6
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCC----------CCceEecCCcceeCCCCeEEEEEEe
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTA----------PKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa----------P~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
-|.|+|. .+.|+.. .+ ..+|+|+|.++.++.-.+-..+ ..-|.|-|+.-.|+||+...|.|.+
T Consensus 29 ~v~i~~T-RvIy~~~-~k--~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~ 101 (257)
T 3q48_A 29 GLIAQGT-RVVFPAS-ER--EVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAY 101 (257)
T ss_dssp --CCSCS-EEEEETT-CS--EEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEE
T ss_pred eEEEcce-EEEEeCC-Cc--EEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEE
Confidence 5888885 8888753 22 4799999999887655533211 1239999999999999999999988
No 14
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=85.82 E-value=6.6 Score=32.50 Aligned_cols=63 Identities=11% Similarity=0.247 Sum_probs=47.6
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccC-----CCCceEecCCcceeCCCCeEEEEEEe
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTT-----APKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-----aP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
-|.|++. .+.|+... + ..+|+|+|.++.++.--+..- ...-|.|-|+.-.|+||+...|.|.+
T Consensus 13 ~v~i~~T-RvIy~~~~-k--~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 80 (221)
T 2co7_B 13 SVKLGAT-RVIYHAGT-A--GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVR 80 (221)
T ss_dssp ECEESCS-EEEEETTS-S--CEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEE
T ss_pred EEEEcce-EEEEcCCC-C--EEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEE
Confidence 3678885 88887542 3 469999999988765544221 12359999999999999999999998
No 15
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=83.78 E-value=13 Score=30.66 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=47.0
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEccCC-------CCceEecCCcceeCCCCeEEEEEEe
Q 029067 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFKFQTTA-------PKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKTTa-------P~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
|.|++. .+.|+... + ..+|+|+|.++. ++.--+...+ ..-|.|-|+.-.|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 71 (218)
T 2xg5_A 2 VSLDRT-RAVFDGSE-K--SMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLST 71 (218)
T ss_dssp EEESCS-EEEEETTS-S--EEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEE
T ss_pred cEeCce-EEEEeCCC-C--EEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567885 88887542 2 569999999987 7655543211 2249999999999999999999988
No 16
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=82.30 E-value=8.9 Score=32.28 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=46.6
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc-----CCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT-----TAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT-----TaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
-|.|++. .+.|+... + ..+|+|+|.++.++.--+-. ....-|.|-|+.--|+||+...|.|.+
T Consensus 23 ~v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 90 (239)
T 4djm_A 23 SLHLGAT-RVVYNPAS-S--GETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVR 90 (239)
T ss_dssp CCEESCS-EEEECTTS-S--CEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEE
T ss_pred eEEEcce-EEEEeCCC-C--EEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEE
Confidence 4778885 78887532 3 46999999988775443321 112249999999999999999999987
No 17
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=80.91 E-value=17 Score=29.61 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEEcCCC-CeEEEEEccC-----CCCceEecCCcceeCCCCeEEEEEE-e
Q 029067 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSK-SHVAFKFQTT-----APKSCYMRPPGGILAPGESLIATVF-K 154 (199)
Q Consensus 89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~-~~VAFKVKTT-----aP~~Y~VRPn~GiL~Pgesi~I~Vt-l 154 (199)
|.|++. .+.|+... + ..+|+|+|.++ .++.--+-.. ...-|.|-|+.-.|+||+...|.|. +
T Consensus 2 v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 70 (206)
T 1l4i_A 2 VALGAT-RVIYPEGQ-K--QVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDA 70 (206)
T ss_dssp EEESCS-EEEEETTC-S--EEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEEC
T ss_pred eEeCce-EEEEeCCC-c--EEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEec
Confidence 567785 78887542 2 56999999986 6655544221 1234999999999999999999998 6
No 18
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=80.01 E-value=11 Score=34.33 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEe---------cCC-----cc-------ee
Q 029067 84 PTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM---------RPP-----GG-------IL 142 (199)
Q Consensus 84 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~V---------RPn-----~G-------iL 142 (199)
+....+.++-. .-.|.- +++..+-+|+++|.++++|-..==+|+.-+|.- .|. .| =|
T Consensus 245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI 322 (382)
T 1yew_A 245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 322 (382)
T ss_dssp CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence 44667788775 677775 588999999999999999988855666666633 221 12 28
Q ss_pred CCCCeEEEEEEee
Q 029067 143 APGESLIATVFKF 155 (199)
Q Consensus 143 ~Pgesi~I~Vtl~ 155 (199)
.|||+.+|.|..+
T Consensus 323 ~PGETr~~~v~a~ 335 (382)
T 1yew_A 323 APGETRTVDVTAS 335 (382)
T ss_dssp CTTCEEEEEEEEE
T ss_pred CCCceeEEEEEee
Confidence 9999999999983
No 19
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=79.07 E-value=20 Score=29.15 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=46.8
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEEEcc-----CCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFKFQT-----TAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKT-----TaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
|.|++. .+.|+... + ..+|+|+|.++. ++.--+-. ....-|.|-|+.-.|+||+...|.|.+
T Consensus 2 v~l~~T-RvIy~~~~-k--~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~ 69 (205)
T 1klf_A 2 VALGAT-RVIYPAGQ-K--QVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILD 69 (205)
T ss_dssp EEESCS-EEEEETTC-S--EEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEE
T ss_pred eEecce-EEEEeCCC-c--EEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEe
Confidence 567885 88887542 2 569999999987 75554422 112359999999999999999999987
No 20
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=77.63 E-value=10 Score=32.32 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeE-EEEEccCCCCceEecCCc-----ceeCCCCeEEEEEEee
Q 029067 86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHV-AFKFQTTAPKSCYMRPPG-----GILAPGESLIATVFKF 155 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~V-AFKVKTTaP~~Y~VRPn~-----GiL~Pgesi~I~Vtl~ 155 (199)
+.-|.|+=. |... ++++.-.|+++|.+..++ -|.|+-. ...|-+-|.. .-|+||+++++.|-+-
T Consensus 41 g~GLeI~g~----f~r~-~g~i~l~l~~~N~s~~~is~faIQfN-kNsFGL~p~~~~~~~~~L~pgqs~~v~lpl~ 110 (258)
T 2g30_A 41 AKGLEISGT----FTHR-QGHIYMEMNFTNKALQHMTDFAIQFN-KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN 110 (258)
T ss_dssp TTTEEEEEE----EEEE-TTEEEEEEEEEECSSSCBCCCEEEEC-CBTTCCEESSCCCCCSCBCTTCEEEEEEEEE
T ss_pred CCcEEEEEE----EEEe-CCEEEEEEEEecCCccceeeeEEEEc-ccccCcccCccccCCCccCCCCcEEEEEeee
Confidence 456666653 5554 567888999999998752 2333322 2233333321 3499999999988884
No 21
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=75.74 E-value=8.9 Score=28.27 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=37.2
Q ss_pred eEEEEEEEcCCCCeEEEEEccCCCCceEe-cCCcceeCCCCeEEEEEEee
Q 029067 107 VRSAISIKNTSKSHVAFKFQTTAPKSCYM-RPPGGILAPGESLIATVFKF 155 (199)
Q Consensus 107 v~s~L~LtN~S~~~VAFKVKTTaP~~Y~V-RPn~GiL~Pgesi~I~Vtl~ 155 (199)
=..+|+|.|.+.+...|.|+......+.+ .|..=.|+||+...+.|++.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~ 82 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLG 82 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEE
Confidence 34899999999999889888766444554 45544789999888777773
No 22
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=73.51 E-value=37 Score=27.96 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=46.5
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc-------CCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT-------TAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT-------TaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
-+.|+-. .+.|+.. .+ ..+|+|+|.++.++.--... ....-|.|-|+.-.|+||+...|.|.+
T Consensus 13 gv~l~~T-RvIy~~~-~k--~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~ 82 (218)
T 4ay0_A 13 GVTIGES-RIIYPLD-AA--GVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQ 82 (218)
T ss_dssp CEEESCC-EEEEETT-CS--CEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEE
T ss_pred eEEECce-EEEECCC-Cc--EEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEe
Confidence 4777774 7788653 23 46899999988875544322 111239999999999999999999988
No 23
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.62 E-value=6.8 Score=30.70 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=25.8
Q ss_pred EEEEEcCCCCeEE---EEEccCCCC---ceEecCCcceeCCCCeEEE
Q 029067 110 AISIKNTSKSHVA---FKFQTTAPK---SCYMRPPGGILAPGESLIA 150 (199)
Q Consensus 110 ~L~LtN~S~~~VA---FKVKTTaP~---~Y~VRPn~GiL~Pgesi~I 150 (199)
.|+|.|.+++.+. |+|+=...+ .-+.-|..=+|+||+++.|
T Consensus 35 fV~L~N~s~~~~~L~GW~L~r~v~g~~~~~y~Fp~~~~L~pg~~VtI 81 (139)
T 2lll_A 35 FVQLKNNSDKDQSLGNWRIKRQVLEGEEIAYKFTPKYILRAGQMVTV 81 (139)
T ss_dssp EEEEEECSSSCEECSSCEEEEEETTSCEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCccccCCCEEEEecCCCccEEEEECCCcEECCCCEEEE
Confidence 6788888876554 556533221 2233566678999998653
No 24
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=72.52 E-value=32 Score=28.71 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=43.9
Q ss_pred EEecCCCceEeeCCCCCeeEEEEEEEcCCCC-eEEEE--EccCC----CCceEecCCcceeCCCCeEEEEEEe
Q 029067 89 LRLDPSTKLFFPYEPGKQVRSAISIKNTSKS-HVAFK--FQTTA----PKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 89 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFK--VKTTa----P~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
|.|+.. .+.|+.. .+ ...|.|+|.++. ++.-. |..-. ..-|.|-|+.--|+||+...|.|.+
T Consensus 2 ~~l~~T-RvIy~~~-~k--~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~ 70 (224)
T 3gfu_C 2 LAVDQT-RYIFRGD-KD--ALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIM 70 (224)
T ss_dssp EECSCS-EEEEETT-SS--CEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEE
T ss_pred ccccce-EEEEeCC-Cc--eEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEE
Confidence 556774 7778753 22 469999999876 43322 22211 1249999999999999999999987
No 25
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=71.45 E-value=11 Score=34.67 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=49.5
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEe---------------------cCCcceeCC
Q 029067 86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM---------------------RPPGGILAP 144 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~V---------------------RPn~GiL~P 144 (199)
...+.++-. .-.|.- +++..+-+|+++|.++++|-+.==+|+.-+|.= .|+ -|.|
T Consensus 281 ~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~P 356 (419)
T 3rfr_A 281 KEQVTTELN-GGVYKV-PGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAP 356 (419)
T ss_dssp SCCCEEEEE-EEEEES-SSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCT
T ss_pred CCceEEEEe-ceEEec-CCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCC
Confidence 345666664 667775 588999999999999999988755566655541 122 4999
Q ss_pred CCeEEEEEEee
Q 029067 145 GESLIATVFKF 155 (199)
Q Consensus 145 gesi~I~Vtl~ 155 (199)
||+.+|+|...
T Consensus 357 GETrt~~V~a~ 367 (419)
T 3rfr_A 357 GESKEIVVKIQ 367 (419)
T ss_dssp TCEEEEEEEEE
T ss_pred CcceEEEEEee
Confidence 99999999983
No 26
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=71.43 E-value=5.7 Score=30.89 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=30.6
Q ss_pred CeeEEEEEEEcCCCC-eEEEEEccCCCCceEec--CCcc-eeCCCCe
Q 029067 105 KQVRSAISIKNTSKS-HVAFKFQTTAPKSCYMR--PPGG-ILAPGES 147 (199)
Q Consensus 105 k~v~s~L~LtN~S~~-~VAFKVKTTaP~~Y~VR--Pn~G-iL~Pges 147 (199)
+...-.++.+|.+.. ---|.++.--|+.|.++ |..| .|.|+..
T Consensus 47 ~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~ 93 (140)
T 1gyu_A 47 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNT 93 (140)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGC
T ss_pred CEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCC
Confidence 446667788998775 45688887788888665 6666 6888443
No 27
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=58.00 E-value=25 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=25.2
Q ss_pred EEEEEcCCCCeEE---EEEccCCCC--ceEecCCcceeCCCCeEEE
Q 029067 110 AISIKNTSKSHVA---FKFQTTAPK--SCYMRPPGGILAPGESLIA 150 (199)
Q Consensus 110 ~L~LtN~S~~~VA---FKVKTTaP~--~Y~VRPn~GiL~Pgesi~I 150 (199)
.|+|.|.+++.+. |+|+=...+ ..+.-|..=+|+||+++.|
T Consensus 39 fV~L~N~s~~~~~LgGW~L~r~v~g~~~~y~FP~~~~L~pg~~VtV 84 (144)
T 3jt0_A 39 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTI 84 (144)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEECCTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEcCCCcEECCCCEEEE
Confidence 6788888877654 455422221 1234455568999998654
No 28
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=50.28 E-value=34 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=39.0
Q ss_pred CCCeeEEEEEEEcCCCCe-EEEEEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 103 PGKQVRSAISIKNTSKSH-VAFKFQTTAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 103 ~~k~v~s~L~LtN~S~~~-VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
.++.++-.++++|..... =+|+|+-...+...-.-..+ |.+|++..|.+..
T Consensus 31 ~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~ 82 (127)
T 3idu_A 31 VNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNW 82 (127)
T ss_dssp TTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEE
Confidence 488899999999999764 67888755555544333333 9999999999998
No 29
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=46.68 E-value=56 Score=27.86 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEEccCCCC----ce--EecCCcceeCCCCeEEEEEEeecCCCC
Q 029067 104 GKQVRSAISIKNTSKSHVA-FKFQTTAPK----SC--YMRPPGGILAPGESLIATVFKFVEPPE 160 (199)
Q Consensus 104 ~k~v~s~L~LtN~S~~~VA-FKVKTTaP~----~Y--~VRPn~GiL~Pgesi~I~Vtl~~~qp~ 160 (199)
+...+-.|.+.|.+..++. |++.-..++ .+ .++|.-..|+||+.+...|..-...|.
T Consensus 67 ~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~~~~~~tI~p~~q~qq~i~v~~~~pF 130 (273)
T 3hs8_A 67 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDF 130 (273)
T ss_dssp TTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEECCCCSCBCTTCEEEEEEEEEECSCC
T ss_pred CceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEecCCCCeECCCCEEEEEEEEEEcccc
Confidence 3467789999999987654 666444443 34 446666899999986655554223454
No 30
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=43.11 E-value=83 Score=22.84 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=36.6
Q ss_pred CCeeEEEEEEEcCCCC---eEEEEEccCCC---CceEecCCcceeCCCCeEEEEEEe
Q 029067 104 GKQVRSAISIKNTSKS---HVAFKFQTTAP---KSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 104 ~k~v~s~L~LtN~S~~---~VAFKVKTTaP---~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
+++..+.+.++|+=.. .+.|-|--..- +.+. .|-|.||+++.+++.+
T Consensus 19 ~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~ 71 (102)
T 2xzz_A 19 GQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSF 71 (102)
T ss_dssp SSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEE
T ss_pred CCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEE
Confidence 6889999999999775 57888765432 3333 3669999999999999
No 31
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=38.81 E-value=11 Score=34.19 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=30.9
Q ss_pred CCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEe
Q 029067 86 RRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYM 135 (199)
Q Consensus 86 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~V 135 (199)
.+.+.|.|..|++|..+++. .++|+..+..-+.|=+.=-..+.|.+
T Consensus 38 ~~~~~l~~~~e~R~ev~~~~----~~~i~l~~g~~~i~G~~L~~~~~~t~ 83 (460)
T 2npi_A 38 WHKLVIPKGSDWQIDLKAEG----KLIVKVNSGIVEIFGTELAVDDEYTF 83 (460)
T ss_dssp CEEEECCTTEECCEECCTTC----EEEEEEEESCEEETTEECCBTSEEEE
T ss_pred cEEEEeCCCcEEEEEECCCC----eEEEEEeeeEEEEEEEEecCCCeEEE
Confidence 46899999999999988763 45555555555555444444555666
No 32
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.29 E-value=23 Score=26.08 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=12.4
Q ss_pred ccccceeccCCCCCcEEecCCC
Q 029067 74 NVSSMAKSLLPTRRRLRLDPST 95 (199)
Q Consensus 74 ~~~~~~ksl~p~~~~L~IdP~~ 95 (199)
.|.-.-|.+....-.|.++|.+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~d 49 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDD 49 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTS
T ss_pred eEEEEEECCCCCEEEEEeCCCC
Confidence 3555555555554456666653
No 33
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=34.06 E-value=71 Score=24.93 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=21.6
Q ss_pred EEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCe
Q 029067 110 AISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGES 147 (199)
Q Consensus 110 ~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pges 147 (199)
.+-+.+..+.+|..--+...|+.|. -+.|.|++||+
T Consensus 45 ~vi~~~~~~~~vLLv~r~~~~g~W~--lPgG~ve~gEt 80 (194)
T 2fvv_A 45 CLCFRSESEEEVLLVSSSRHPDRWI--VPGGGMEPEEE 80 (194)
T ss_dssp EEEESSTTCCEEEEEECSSCTTSEE--CSEEECCTTCC
T ss_pred EEEEEECCCCEEEEEEEeCCCCcEE--CCCCcCCCCcC
Confidence 3434455555665433334466665 46899999997
No 34
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=31.84 E-value=65 Score=24.29 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=26.9
Q ss_pred EEEEEcCCCCeEE---EEEccCCCC---ceEecCCcceeCCCCeEEE
Q 029067 110 AISIKNTSKSHVA---FKFQTTAPK---SCYMRPPGGILAPGESLIA 150 (199)
Q Consensus 110 ~L~LtN~S~~~VA---FKVKTTaP~---~Y~VRPn~GiL~Pgesi~I 150 (199)
.++|.|.+++.+. |+++-...+ .|+. |..=+|+||+++.|
T Consensus 26 fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 26 FIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred EEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 6889998887664 667533332 3544 65668999998654
No 35
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=29.25 E-value=1.6e+02 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=38.4
Q ss_pred eeEEEEEEEcCCCCeEEEEEccCCCCce--EecCCccee-CCCCeEEEEEEe
Q 029067 106 QVRSAISIKNTSKSHVAFKFQTTAPKSC--YMRPPGGIL-APGESLIATVFK 154 (199)
Q Consensus 106 ~v~s~L~LtN~S~~~VAFKVKTTaP~~Y--~VRPn~GiL-~Pgesi~I~Vtl 154 (199)
.++-+-+++|.....-.|+++.++|.-. .|.|..=.+ +.||+..++|++
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~ 589 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 589 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEE
Confidence 4445568999999999999998888754 567887655 568988888887
No 36
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=29.05 E-value=56 Score=24.41 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=30.9
Q ss_pred CCCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc
Q 029067 83 LPTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT 127 (199)
Q Consensus 83 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT 127 (199)
.|..-.|.+.|..-=..+.-.+..++..|+|.|....++-.|+|-
T Consensus 54 VPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~~~~lklR~kl 98 (122)
T 3zy7_A 54 VPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 98 (122)
T ss_dssp CCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTTCCCCCEEEEE
T ss_pred cCcccEEEecCCCCCccCCCCCCCEEEEEEEECCCCCCEEEEEEE
Confidence 355667999997533344323578999999999987665555553
No 37
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=28.99 E-value=1.5e+02 Score=25.81 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEeecCCCCCCCCCCCCCCCceEEEEEEEeCCCC
Q 029067 109 SAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFKFVEPPENNERPTDQKSKVKFKIMSLKVKGEM 185 (199)
Q Consensus 109 s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl~~~qp~~~e~p~~~k~kDKFLVqSv~v~~~~ 185 (199)
-++.|+|.++- -|.++-+.+..|.+.++.--|+|+++..+.|-.. +.. ..-.-+|-|.-..+.+++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~ 335 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFK-----QGI----KGGDVNFEVTNFIVAPDK 335 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEEC-----TTC----CCCEEEEEEEEEEEETTE
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecc-----ccc----cceEEEEEeeeeeecCCC
Confidence 57888888876 5666778899999999999999999999999881 111 234567777666655443
No 38
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=27.47 E-value=1e+02 Score=22.67 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=38.8
Q ss_pred CCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCC------cceeCCCCeEEEEEEe
Q 029067 104 GKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPP------GGILAPGESLIATVFK 154 (199)
Q Consensus 104 ~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn------~GiL~Pgesi~I~Vtl 154 (199)
++.....++++|.++..+.||+.==+.+-+.|.+. .=+|.+++++.|.-+-
T Consensus 35 nG~l~v~v~~~s~~~~~l~Yrf~WyD~~G~~v~~~~~~~W~~~~l~g~~~~~i~~va 91 (107)
T 4gio_A 35 NGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVILRKLA 91 (107)
T ss_dssp TSCEEEEEEECCSSCEEEEEEEEEECTTSCBCCSSCCCCCEEEEECTTCCEEEEEEC
T ss_pred CCEEEEEEEecCCCceEEEEEEEEECCCCCCcCCCCCCCCEEEEEcCCCeEEEEEEC
Confidence 44556788999999999999998777777777653 2358888887777664
No 39
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=25.88 E-value=2e+02 Score=21.23 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=48.6
Q ss_pred CeeEEEEEEEcCCCCe-EEEEEccCCCCceEec--CCcc-eeCC--CCeEEEEEEeecCCCCCCCCCCCCCCCceEEEEE
Q 029067 105 KQVRSAISIKNTSKSH-VAFKFQTTAPKSCYMR--PPGG-ILAP--GESLIATVFKFVEPPENNERPTDQKSKVKFKIMS 178 (199)
Q Consensus 105 k~v~s~L~LtN~S~~~-VAFKVKTTaP~~Y~VR--Pn~G-iL~P--gesi~I~Vtl~~~qp~~~e~p~~~k~kDKFLVqS 178 (199)
+...-.+..+|.+..+ --|.++.--|+.|.++ |..| .|.| +..+.=.+.+ ..+. . .+-|=|+.|.+
T Consensus 29 ~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i--~n~~-~-----~~lklR~klsY 100 (122)
T 3zy7_A 29 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKV--LNPQ-K-----QQLRMRIKLTF 100 (122)
T ss_dssp CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEE--ECTT-C-----CCCCEEEEEEE
T ss_pred CeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEE--ECCC-C-----CCEEEEEEEEE
Confidence 3466778888998764 5688888888887655 7776 6998 6665544443 2332 1 23455566655
Q ss_pred EEeCCC-------CCchhhhh
Q 029067 179 LKVKGE-------MDYVPELV 192 (199)
Q Consensus 179 v~v~~~-------~d~~~elF 192 (199)
..=+.. .+++.++|
T Consensus 101 ~~~g~~~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 101 NWNGYKVQSEAEVNNFPPQSW 121 (122)
T ss_dssp EETTEEEEEEEEECCCCGGGT
T ss_pred EECCEEEEEEEEECCCChhhC
Confidence 532221 14666776
No 40
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=25.31 E-value=18 Score=27.80 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=16.7
Q ss_pred CcccccCcccccccccccccccccccceeccCCCCCcEEec
Q 029067 52 SHVYQQNQSQQVMGRSSVVNSSNVSSMAKSLLPTRRRLRLD 92 (199)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ksl~p~~~~L~Id 92 (199)
|++|||+.++...+....-.-++..--|+-|...+-+|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~gsyKYSA~kL~eKGVLvei~ 42 (121)
T 3isu_A 2 HHHHHHSSGRENLYFQGGKKQPSLHYTAAQLLEKGVLVEIE 42 (121)
T ss_dssp -------------CCC----CCCEEEEHHHHHHHTSEEEET
T ss_pred ccccccccccccccccccccCCCeeECHHHHhhCCEEEEec
Confidence 45555555554333333334456777777787778888885
No 41
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=25.31 E-value=71 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.7
Q ss_pred EEEEEcCCCCeEEEEEccCCC
Q 029067 110 AISIKNTSKSHVAFKFQTTAP 130 (199)
Q Consensus 110 ~L~LtN~S~~~VAFKVKTTaP 130 (199)
.|+++......+.|||+.+.+
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 578888888899999997776
No 42
>3o0l_A Uncharacterized protein; PFAM DUF1425 family member, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.81A {Shewanella loihica}
Probab=24.96 E-value=1.4e+02 Score=22.08 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=39.1
Q ss_pred CCCeeEEEEEEEcCCCCe--EEEEEccCCCCceEecCC-cc----eeCCCCeEEEEEEe
Q 029067 103 PGKQVRSAISIKNTSKSH--VAFKFQTTAPKSCYMRPP-GG----ILAPGESLIATVFK 154 (199)
Q Consensus 103 ~~k~v~s~L~LtN~S~~~--VAFKVKTTaP~~Y~VRPn-~G----iL~Pgesi~I~Vtl 154 (199)
.++..+..+.|+|.+..+ |.||+-==+.+-+.|.|. .. +|.+++++.|.-.-
T Consensus 36 ~~g~l~~~~~l~N~~~~~~~l~Yrf~WyD~~Gl~v~~~~~~W~~l~l~~~~~~~l~~va 94 (112)
T 3o0l_A 36 EAGFLRARGTIISKSPKDQRLQYKFTWYDINGATVEDEGVSWKSLKLHGKQQMQVTALS 94 (112)
T ss_dssp GGGCEEEEEEEEECSSSCEEEEEEEEEECTTSCBCCCTTCCCEEEEECTTCEEEEEEEC
T ss_pred cCCeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCcEEEEECCCCeEEEEEEC
Confidence 466778999999999885 899987667777777765 22 47888877776664
No 43
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=24.12 E-value=1.2e+02 Score=23.34 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=29.8
Q ss_pred CeeEEEEEEEcCCCC-eEEEEEccCCCCceEec--CCcc-eeCCCC
Q 029067 105 KQVRSAISIKNTSKS-HVAFKFQTTAPKSCYMR--PPGG-ILAPGE 146 (199)
Q Consensus 105 k~v~s~L~LtN~S~~-~VAFKVKTTaP~~Y~VR--Pn~G-iL~Pge 146 (199)
+...-.++.+|.+.. ---|.++.--|+.|.++ |..| .|.|+.
T Consensus 53 ~~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~ 98 (146)
T 1iu1_A 53 SVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFN 98 (146)
T ss_dssp TEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGG
T ss_pred CEEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCC
Confidence 345567788998765 55678887778888665 6666 688844
No 44
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=23.98 E-value=42 Score=20.27 Aligned_cols=18 Identities=44% Similarity=0.942 Sum_probs=12.4
Q ss_pred cCCCCCCceeec--cccccc
Q 029067 6 KKSGAEGKVWGL--CKMPFW 23 (199)
Q Consensus 6 ~~~~~~~~~~~~--~~~~~~ 23 (199)
+..-..||+|+- ||-||-
T Consensus 15 rsncpkgkvwngfdckspfa 34 (36)
T 1iyc_A 15 RSNCPKGKVWNGFDCKSPFA 34 (36)
T ss_dssp TSCCCSSCEEETTEEECGGG
T ss_pred ccCCCCcceecCccccCccc
Confidence 334448999984 777873
No 45
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=22.56 E-value=15 Score=22.20 Aligned_cols=7 Identities=86% Similarity=1.858 Sum_probs=5.5
Q ss_pred ccccccC
Q 029067 19 KMPFWQS 25 (199)
Q Consensus 19 ~~~~~~~ 25 (199)
+||||+.
T Consensus 11 ~~pfw~k 17 (32)
T 1yfn_E 11 KMPFWQK 17 (32)
T ss_pred hChHHHH
Confidence 5799984
No 46
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=21.50 E-value=1.6e+02 Score=22.09 Aligned_cols=43 Identities=19% Similarity=0.419 Sum_probs=27.2
Q ss_pred EEEEEcCCCCeEE---EEEccC-C--CCceEecCCcceeCCCCeEEEEEEe
Q 029067 110 AISIKNTSKSHVA---FKFQTT-A--PKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 110 ~L~LtN~S~~~VA---FKVKTT-a--P~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
.|+|.|.+++.+. |+|+-. . ...-+.-|..=+|+||+++. |.-
T Consensus 20 fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vt--Iws 68 (121)
T 1ifr_A 20 FVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVT--IWA 68 (121)
T ss_dssp EEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEE--EEE
T ss_pred EEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEE--EEe
Confidence 6888888877654 455533 2 22334456667899999854 554
No 47
>2vhk_A Thaumatin-I; kinetics of crystallization, chirality, temperature, microbatch, plant protein, sweet protein; HET: TLA; 0.94A {Thaumatococcus daniellii} PDB: 2blu_A* 2blr_A* 2wbz_A 3n02_A* 3n03_A* 2vhr_A* 1lr2_A* 1lr3_A* 1lxz_A* 1ly0_A* 1pp3_A 1thi_A 2oqn_A* 1kwn_A* 2vi1_A 2vi2_A* 2vi3_A* 2vi4_A* 2vu6_A 2vu7_A* ...
Probab=21.41 E-value=75 Score=26.35 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=29.9
Q ss_pred EEEEEcCCCCeEEEEEccCCCCceEecCCcc-eeCCCCeEEEEEE
Q 029067 110 AISIKNTSKSHVAFKFQTTAPKSCYMRPPGG-ILAPGESLIATVF 153 (199)
Q Consensus 110 ~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~G-iL~Pgesi~I~Vt 153 (199)
+|+|+|.....|.--+.+-++. -|..| .|+||++..|.|-
T Consensus 2 tfti~N~C~~tVWp~~~~g~~~----l~~gG~~L~~G~s~~~~vp 42 (206)
T 2vhk_A 2 TFEIVNRCSYTVWAAASKGDAA----LDAGGRQLNSGESWTINVE 42 (206)
T ss_dssp EEEEEECSSSCEEEEEECSSSE----EEEEEEEECTTCEEEEECC
T ss_pred EEEEEeCCCCCcCCEEcCCCCc----CCCCCeecCCCCEEEEECC
Confidence 7899999999998888653322 24455 6999999887753
No 48
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=21.23 E-value=2e+02 Score=19.59 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=33.4
Q ss_pred EecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCcceeCCCCeEEEEEEe
Q 029067 90 RLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPGGILAPGESLIATVFK 154 (199)
Q Consensus 90 ~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~GiL~Pgesi~I~Vtl 154 (199)
..+|+ +|..+ .|+.+ .+.++|.....-.|-+.... ..+.+.||++..++++.
T Consensus 24 ~F~P~-~i~v~--~G~tV--~~~~~n~d~~~H~~~~~~~~--------~~~~~~pg~~~~~~~t~ 75 (100)
T 4hci_A 24 YFNPN-VITIP--INEST--TLLLKNKGKSEHTFTIKKLG--------IDVVVESGKEKNITVKP 75 (100)
T ss_dssp EEESS-EEEEC--TTSCE--EEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEECC
T ss_pred EEeCC-EEEEC--CCCEE--EEEEEcCCCceEEEEEecCC--------cceeecCCcceeEEEec
Confidence 56775 66664 35543 56778887666666664332 12468999998888764
No 49
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=20.92 E-value=76 Score=23.27 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=13.7
Q ss_pred cceeCCCCeEEEEEEe
Q 029067 139 GGILAPGESLIATVFK 154 (199)
Q Consensus 139 ~GiL~Pgesi~I~Vtl 154 (199)
...|.||++..+++++
T Consensus 97 t~~l~pG~~~~~~~~~ 112 (140)
T 1qhq_A 97 TAMLNAGESGSVTFRT 112 (140)
T ss_dssp CCCBCTTEEEEEEEEC
T ss_pred ceeeCCCceeEEEEEe
Confidence 4679999999999886
No 50
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.89 E-value=2.1e+02 Score=22.02 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=33.9
Q ss_pred CcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEccCCCCceEecCCc
Q 029067 87 RRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQTTAPKSCYMRPPG 139 (199)
Q Consensus 87 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP~~Y~VRPn~ 139 (199)
..-+|+.+ .|.-. -++.++-..++.-...+-=.|.++|+..+.-.|+-+.
T Consensus 29 ~~pRVN~s-~L~~f--vGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~ 78 (142)
T 2pi2_E 29 PRSRINAG-MLAQF--IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELME 78 (142)
T ss_dssp CCEEECGG-GGGGS--TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSS
T ss_pred CcceECHH-HHHhh--CCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCC
Confidence 45677776 44221 2788888888887755555678899888887777443
No 51
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=20.61 E-value=1.1e+02 Score=22.92 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=35.8
Q ss_pred cEEecCCCceEeeCCCCCeeEEEEEEEcCCCCe-----EEEEEccCC-------------C-CceEe--cC----Cccee
Q 029067 88 RLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSH-----VAFKFQTTA-------------P-KSCYM--RP----PGGIL 142 (199)
Q Consensus 88 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~-----VAFKVKTTa-------------P-~~Y~V--RP----n~GiL 142 (199)
.+.++|. +|..+. .++. -+|+++|...-+ --|-|-+.+ + ..|.- .+ ..++|
T Consensus 11 ~m~F~p~-~i~V~k-~G~~--vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l 86 (128)
T 2iaa_C 11 SMQFNTK-SIVVDK-TCKE--FTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVI 86 (128)
T ss_dssp TSCBSCS-EEEECT-TCSE--EEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCB
T ss_pred CceEecC-EEEEec-CCcE--EEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceee
Confidence 4678885 777743 2443 479999998542 222222211 0 11110 01 13578
Q ss_pred CCCCeEEEEEEe
Q 029067 143 APGESLIATVFK 154 (199)
Q Consensus 143 ~Pgesi~I~Vtl 154 (199)
.||++..|++..
T Consensus 87 ~pGes~~vtf~~ 98 (128)
T 2iaa_C 87 GGGETDSVTFDV 98 (128)
T ss_dssp CTTCEEEEEEES
T ss_pred CCCCEEEEEEec
Confidence 999999999985
No 52
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=20.49 E-value=1e+02 Score=23.59 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCCCcEEecCCCceEeeCCCCCeeEEEEEEEcCCCCeEEEEEcc
Q 029067 84 PTRRRLRLDPSTKLFFPYEPGKQVRSAISIKNTSKSHVAFKFQT 127 (199)
Q Consensus 84 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT 127 (199)
|..-.|.+.|..--....-....++..|+|.|....++..|+|-
T Consensus 73 PKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~~~l~LR~kl 116 (140)
T 1gyu_A 73 PKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQKQQLRMRIKL 116 (140)
T ss_dssp CTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTCCCCCEEEEE
T ss_pred CcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCCCCEEEEEEE
Confidence 45567888775333332212345788999999876665555553
No 53
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=20.02 E-value=97 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCeEEEEEccCCC
Q 029067 109 SAISIKNTSKSHVAFKFQTTAP 130 (199)
Q Consensus 109 s~L~LtN~S~~~VAFKVKTTaP 130 (199)
-.|+++......|.|||+.+.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4788888888899999997776
Done!