Query 029068
Match_columns 199
No_of_seqs 209 out of 1270
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 2.7E-21 5.9E-26 133.9 7.6 61 15-75 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 4.8E-20 1E-24 129.1 8.3 62 16-77 1-62 (64)
3 PHA00280 putative NHN endonucl 99.6 3.1E-16 6.8E-21 123.3 6.7 65 2-69 54-119 (121)
4 PF00847 AP2: AP2 domain; Int 99.2 3.9E-11 8.6E-16 81.0 5.5 52 15-66 1-56 (56)
5 PF14657 Integrase_AP2: AP2-li 82.9 5.8 0.00013 25.5 5.7 38 27-64 1-42 (46)
6 COG2101 SPT15 TATA-box binding 68.4 32 0.0007 29.2 7.6 59 12-75 37-96 (185)
7 PHA02601 int integrase; Provis 66.0 10 0.00022 33.0 4.5 44 19-63 2-46 (333)
8 PRK09692 integrase; Provisiona 65.6 18 0.00039 32.9 6.2 40 20-59 33-78 (413)
9 PF13356 DUF4102: Domain of un 65.4 27 0.00058 25.2 6.0 48 17-64 22-75 (89)
10 cd00801 INT_P4 Bacteriophage P 61.2 18 0.00039 31.1 5.1 39 25-63 9-49 (357)
11 PF10729 CedA: Cell division a 55.7 25 0.00054 25.5 4.2 38 14-54 30-67 (80)
12 PF00352 TBP: Transcription fa 50.9 60 0.0013 23.4 5.7 47 15-64 36-83 (86)
13 PF05036 SPOR: Sporulation rel 50.6 20 0.00044 24.0 3.0 25 36-60 41-65 (76)
14 PLN00062 TATA-box-binding prot 44.0 1.1E+02 0.0025 25.4 7.1 49 13-64 32-81 (179)
15 cd04516 TBP_eukaryotes eukaryo 42.1 1.3E+02 0.0028 24.9 7.1 49 13-64 32-81 (174)
16 PF08846 DUF1816: Domain of un 41.0 70 0.0015 22.9 4.6 41 27-67 9-49 (68)
17 PF08471 Ribonuc_red_2_N: Clas 40.2 31 0.00068 26.2 2.8 21 43-63 70-90 (93)
18 cd04517 TLF TBP-like factors ( 38.9 1.4E+02 0.003 24.7 6.8 46 16-64 35-81 (174)
19 cd01433 Ribosomal_L16_L10e Rib 38.1 62 0.0014 24.6 4.3 44 19-64 59-106 (112)
20 cd04518 TBP_archaea archaeal T 34.7 1.6E+02 0.0035 24.4 6.5 49 13-64 32-81 (174)
21 PRK10113 cell division modulat 33.6 31 0.00067 25.0 1.8 37 15-54 31-67 (80)
22 COG0197 RplP Ribosomal protein 32.5 75 0.0016 26.0 4.1 37 27-66 95-131 (146)
23 cd00652 TBP_TLF TATA box bindi 31.7 1.9E+02 0.0042 23.8 6.5 49 13-64 32-81 (174)
24 KOG3422 Mitochondrial ribosoma 30.1 1.1E+02 0.0024 26.7 4.9 37 27-65 133-169 (221)
25 PF14112 DUF4284: Domain of un 29.3 39 0.00084 26.3 1.9 18 39-56 2-19 (122)
26 TIGR01164 rplP_bact ribosomal 28.9 1.1E+02 0.0025 24.0 4.5 34 27-63 91-124 (126)
27 PRK09203 rplP 50S ribosomal pr 27.8 1.1E+02 0.0023 24.5 4.2 36 27-65 92-127 (138)
28 PF09003 Phage_integ_N: Bacter 26.7 2.1E+02 0.0046 20.8 5.2 39 26-66 25-63 (75)
29 PF12286 DUF3622: Protein of u 24.6 1.4E+02 0.0031 21.6 3.9 31 24-54 14-48 (71)
30 cd04518 TBP_archaea archaeal T 21.5 3.5E+02 0.0076 22.4 6.3 50 12-64 122-172 (174)
31 PRK00394 transcription factor; 21.3 3.4E+02 0.0073 22.5 6.2 49 13-64 31-80 (179)
32 CHL00044 rpl16 ribosomal prote 20.7 1.9E+02 0.0041 23.1 4.4 36 27-65 92-127 (135)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.85 E-value=2.7e-21 Score=133.91 Aligned_cols=61 Identities=62% Similarity=1.113 Sum_probs=57.3
Q ss_pred CceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 029068 15 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75 (199)
Q Consensus 15 S~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s 75 (199)
|+||||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 7899999888899999999655599999999999999999999999999999999999975
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.82 E-value=4.8e-20 Score=129.12 Aligned_cols=62 Identities=58% Similarity=1.101 Sum_probs=58.2
Q ss_pred ceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCCCC
Q 029068 16 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPP 77 (199)
Q Consensus 16 ~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s~~ 77 (199)
+||||+++++|||+|+|+++.+++++|||+|+|+|||++|||.++.+++|.++.+|||.+..
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y 62 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY 62 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence 59999988899999999987799999999999999999999999999999999999998643
No 3
>PHA00280 putative NHN endonuclease
Probab=99.64 E-value=3.1e-16 Score=123.35 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=58.9
Q ss_pred CccccCCCCCCCCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcc
Q 029068 2 VKHVVEKPAERSDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 69 (199)
Q Consensus 2 ~~~~~~~~~~~n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~ 69 (199)
+|++|++++++|+||||||+++ +.|||+|+|+ .+||+++||.|+++|+|+.||+ ++.+|||++|.
T Consensus 54 eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 54 ENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred HHhcccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 3678888899999999999977 4799999999 8999999999999999999997 67789999875
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.19 E-value=3.9e-11 Score=81.01 Aligned_cols=52 Identities=37% Similarity=0.462 Sum_probs=45.2
Q ss_pred CceeeEEeCC-CCcEEEEEeeCCC---CeEEeeccCccHHHHHHHHHHHHHHhcCC
Q 029068 15 SRYKGVRKRK-WGKYVSEIRLPNS---RARIWLGSYDTAEKAARAFDAALFCLRGR 66 (199)
Q Consensus 15 S~yrGV~~r~-~gkW~A~I~~~~~---~kri~LGtf~t~eeAA~AYd~aa~~l~G~ 66 (199)
|+|+||++++ .++|+|+|++... +++++||.|++++||++|++.++.+++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899998774 7999999997422 49999999999999999999999999874
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=82.91 E-value=5.8 Score=25.53 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=29.8
Q ss_pred cEEEEEe--eCCCC--eEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 27 KYVSEIR--LPNSR--ARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 27 kW~A~I~--~~~~~--kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+|..+|. .+..| ++++-+-|.|..||..+...+...+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 5788883 44344 67888999999999999998877764
No 6
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=68.42 E-value=32 Score=29.15 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 029068 12 RSDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 75 (199)
Q Consensus 12 ~n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~a~~NFp~s 75 (199)
=|..+|-|+-+| ..-|-.+-|- ..||-+-.|. ++.|+.++|-.+.+..++. ...+++..
T Consensus 37 YnP~qFpGlv~Rl~ePk~a~LIF--~SGK~VcTGa-Ks~ed~~~av~~~~~~L~~--~g~~~~~~ 96 (185)
T COG2101 37 YNPEQFPGLVYRLEEPKTAALIF--RSGKVVCTGA-KSVEDVHRAVKKLAKKLKD--GGIDIDFE 96 (185)
T ss_pred cCHhHCCeeEEEecCCcceEEEE--ecCcEEEecc-CcHHHHHHHHHHHHHHHHh--cCcCcCCC
Confidence 467899998766 4567778888 8899998997 7899999999999988876 44555543
No 7
>PHA02601 int integrase; Provisional
Probab=65.98 E-value=10 Score=33.02 Aligned_cols=44 Identities=27% Similarity=0.250 Sum_probs=29.7
Q ss_pred eEEeCCCCcEEEEEeeC-CCCeEEeeccCccHHHHHHHHHHHHHHh
Q 029068 19 GVRKRKWGKYVSEIRLP-NSRARIWLGSYDTAEKAARAFDAALFCL 63 (199)
Q Consensus 19 GV~~r~~gkW~A~I~~~-~~~kri~LGtf~t~eeAA~AYd~aa~~l 63 (199)
+|++.+.|+|+++|+.. ..|+++. .+|.|..||..........+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 46666778999999842 2366654 36999998876665544443
No 8
>PRK09692 integrase; Provisional
Probab=65.56 E-value=18 Score=32.86 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=26.1
Q ss_pred EEeCCCC--cEEEEEeeCCCCe--EEeeccCc--cHHHHHHHHHHH
Q 029068 20 VRKRKWG--KYVSEIRLPNSRA--RIWLGSYD--TAEKAARAFDAA 59 (199)
Q Consensus 20 V~~r~~g--kW~A~I~~~~~~k--ri~LGtf~--t~eeAA~AYd~a 59 (199)
|+.++.| .|+.+.+.+.+|+ ++-||.|+ |..+|..+..++
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~ 78 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAES 78 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHH
Confidence 3444544 4999987554454 47899999 677776654443
No 9
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=65.38 E-value=27 Score=25.19 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=30.3
Q ss_pred eeeE--EeCCCC--cEEEEEeeCCCCeEEeeccCcc--HHHHHHHHHHHHHHhc
Q 029068 17 YKGV--RKRKWG--KYVSEIRLPNSRARIWLGSYDT--AEKAARAFDAALFCLR 64 (199)
Q Consensus 17 yrGV--~~r~~g--kW~A~I~~~~~~kri~LGtf~t--~eeAA~AYd~aa~~l~ 64 (199)
..|. +..+.| .|+-+.+.....+++.||.|.+ ..+|..........+.
T Consensus 22 ~~GL~l~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~~ 75 (89)
T PF13356_consen 22 VPGLYLRVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALVR 75 (89)
T ss_dssp STTEEEEE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHHH
Confidence 3454 344544 5998888433346899999975 6777666666555553
No 10
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=61.20 E-value=18 Score=31.05 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=27.4
Q ss_pred CCcEEEEEeeCCCCeEEeeccCc--cHHHHHHHHHHHHHHh
Q 029068 25 WGKYVSEIRLPNSRARIWLGSYD--TAEKAARAFDAALFCL 63 (199)
Q Consensus 25 ~gkW~A~I~~~~~~kri~LGtf~--t~eeAA~AYd~aa~~l 63 (199)
.+.|+.+++....++++.||+|+ +.++|.....+....+
T Consensus 9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 35699998854444678899995 7778777766655444
No 11
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=55.73 E-value=25 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=24.5
Q ss_pred CCceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHH
Q 029068 14 DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAAR 54 (199)
Q Consensus 14 ~S~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~ 54 (199)
--+||-|+.-+ |||+|.+. .+-.-.---.|..+|.|-+
T Consensus 30 ~dgfrdvw~lr-gkyvafvl--~ge~f~rsp~fs~pesaqr 67 (80)
T PF10729_consen 30 MDGFRDVWQLR-GKYVAFVL--MGEHFRRSPAFSVPESAQR 67 (80)
T ss_dssp TTTECCECCCC-CEEEEEEE--SSS-EEE---BSSHHHHHH
T ss_pred cccccceeeec-cceEEEEE--ecchhccCCCcCCcHHHHH
Confidence 35788886545 99999998 4443344467888887765
No 12
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=50.86 E-value=60 Score=23.37 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=35.6
Q ss_pred CceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 15 SRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 15 S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
.+|.||..| ..-+-...|. .+||-+..|+ .+.|+|..|.+.....|.
T Consensus 36 e~fpgl~~r~~~p~~t~~IF--~sGki~itGa-ks~~~~~~a~~~i~~~L~ 83 (86)
T PF00352_consen 36 ERFPGLIYRLRNPKATVLIF--SSGKIVITGA-KSEEEAKKAIEKILPILQ 83 (86)
T ss_dssp TTESSEEEEETTTTEEEEEE--TTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEeecCCcEEEEEE--cCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 478898766 3346667777 8999888886 788999999988776653
No 13
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=50.59 E-value=20 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.342 Sum_probs=18.7
Q ss_pred CCCeEEeeccCccHHHHHHHHHHHH
Q 029068 36 NSRARIWLGSYDTAEKAARAFDAAL 60 (199)
Q Consensus 36 ~~~kri~LGtf~t~eeAA~AYd~aa 60 (199)
...-++.+|.|+|.++|..+.....
T Consensus 41 ~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 41 GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHh
Confidence 3445888888888888888777655
No 14
>PLN00062 TATA-box-binding protein; Provisional
Probab=43.97 E-value=1.1e+02 Score=25.44 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=37.3
Q ss_pred CCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 13 SDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 13 n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+..+|-||..| +.-|=.+-|. .+||-+--|. .+.|+|..|.++.+..+.
T Consensus 32 ePe~fpgli~Rl~~Pk~t~lIF--~SGKiviTGa-ks~e~a~~a~~~~~~~L~ 81 (179)
T PLN00062 32 NPKRFAAVIMRIREPKTTALIF--ASGKMVCTGA-KSEHDSKLAARKYARIIQ 81 (179)
T ss_pred CCccCcEEEEEeCCCcEEEEEE--CCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 44579998766 4456677777 8888777775 788999999999888774
No 15
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=42.05 E-value=1.3e+02 Score=24.94 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=37.5
Q ss_pred CCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 13 SDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 13 n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+..+|-||..| +.-|=.+-|. .+||-+-.|. .+.|+|..|.++.+..++
T Consensus 32 ePe~fpgli~Rl~~Pk~t~lIF--~SGKiviTGa-ks~e~a~~a~~~i~~~L~ 81 (174)
T cd04516 32 NPKRFAAVIMRIREPKTTALIF--SSGKMVCTGA-KSEDDSKLAARKYARIIQ 81 (174)
T ss_pred CCccCcEEEEEeCCCcEEEEEE--CCCeEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 34688898766 3356677777 8898888887 578899999998887774
No 16
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=40.95 E-value=70 Score=22.90 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=30.8
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCCC
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRS 67 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~~ 67 (199)
.|=++|.-..-.-..|-|-|.|.+||..+.-.-..-|..+.
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~Eg 49 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESEG 49 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhhC
Confidence 46688884444578999999999999998776666665443
No 17
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=40.18 E-value=31 Score=26.21 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred eccCccHHHHHHHHHHHHHHh
Q 029068 43 LGSYDTAEKAARAFDAALFCL 63 (199)
Q Consensus 43 LGtf~t~eeAA~AYd~aa~~l 63 (199)
-|+|+|+|+|..-||.....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 499999999999999987665
No 18
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=38.86 E-value=1.4e+02 Score=24.72 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=36.1
Q ss_pred ceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 16 RYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 16 ~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+|.||..| +.-|=.+-|. .+||-+-.|. .+.|+|++|.++.+..+.
T Consensus 35 ~fpgli~R~~~Pk~t~lIF--~sGKiviTGa-ks~~~~~~a~~~~~~~l~ 81 (174)
T cd04517 35 RYPKVTMRLREPRATASVW--SSGKITITGA-TSEEEAKQAARRAARLLQ 81 (174)
T ss_pred CCCEEEEEecCCcEEEEEE--CCCeEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 89999776 4457677787 7888776664 789999999998887773
No 19
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=38.05 E-value=62 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=31.3
Q ss_pred eEEeCC-CC---cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 19 GVRKRK-WG---KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 19 GV~~r~-~g---kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
++|+++ .| .|+++|+ .+..-+-++.....+.|..|...++.+|-
T Consensus 59 ~~rMGkGKG~~~~~~a~v~--~G~iifEi~~~~~~~~~~~alk~a~~Klp 106 (112)
T cd01433 59 ETRMGKGKGKPEGWVARVK--PGQILFEVRGVPEEEVAKEALRRAAKKLP 106 (112)
T ss_pred ccccCCCCCCccEEEEEEC--CCCEEEEEeCcCcHHHHHHHHHHhhccCC
Confidence 455554 23 4999999 55555666666558999999888887763
No 20
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=34.69 E-value=1.6e+02 Score=24.41 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 13 SDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 13 n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+..+|.|+..| +.-|=.+-|. .+||-+-.|. .+.|+|..|-++.+..+.
T Consensus 32 ~P~~fpgli~Rl~~Pk~t~lIF--~SGKiv~tGa-ks~~~a~~a~~~~~~~L~ 81 (174)
T cd04518 32 NPDQFPGLVYRLEDPKIAALIF--RSGKMVCTGA-KSVEDLHRAVKEIIKKLK 81 (174)
T ss_pred CCCcCcEEEEEccCCcEEEEEE--CCCeEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 45689999777 3345556666 8888877776 789999999999888775
No 21
>PRK10113 cell division modulator; Provisional
Probab=33.61 E-value=31 Score=25.01 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=23.2
Q ss_pred CceeeEEeCCCCcEEEEEeeCCCCeEEeeccCccHHHHHH
Q 029068 15 SRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAAR 54 (199)
Q Consensus 15 S~yrGV~~r~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~ 54 (199)
-+||-|+.-+ |||+|.+.. +-.-.---.|..+|.|-+
T Consensus 31 d~frDVW~Lr-GKYVAFvl~--ge~FrRSPaFs~PEsAQR 67 (80)
T PRK10113 31 DSFRDVWMLR-GKYVAFVLM--GESFLRSPAFSVPESAQR 67 (80)
T ss_pred cchhhhheec-cceEEEEEe--chhhccCCccCCcHHHHH
Confidence 4677776545 999999882 222222356777776654
No 22
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=32.53 E-value=75 Score=26.03 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=30.5
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCC
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGR 66 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~ 66 (199)
.|+|+|. -|+.++-=...+++.|.+|...|+.+|-+.
T Consensus 95 gwaArVk---pG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 95 GWAARVK---PGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEEec---CCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 3999998 477777777788888999999999888654
No 23
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=31.73 E-value=1.9e+02 Score=23.80 Aligned_cols=49 Identities=24% Similarity=0.163 Sum_probs=36.4
Q ss_pred CCCceeeEEeCC-CCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 13 SDSRYKGVRKRK-WGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 13 n~S~yrGV~~r~-~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+..+|.||..|- .-|=.+-|. .+||-+-.|. .+.|+|..|.++.+..++
T Consensus 32 ePe~fpgli~R~~~P~~t~lIf--~sGKivitGa-ks~~~~~~a~~~~~~~L~ 81 (174)
T cd00652 32 NPKRFPGVIMRLREPKTTALIF--SSGKMVITGA-KSEEDAKLAARKYARILQ 81 (174)
T ss_pred CCCccceEEEEcCCCcEEEEEE--CCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 446899987773 345566666 8898887786 578888888888887774
No 24
>KOG3422 consensus Mitochondrial ribosomal protein L16 [Translation, ribosomal structure and biogenesis]
Probab=30.12 E-value=1.1e+02 Score=26.69 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=31.9
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcC
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRG 65 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G 65 (199)
.|+++|. .++.-+-+|---++++|..|.+.|+.++-+
T Consensus 133 ~wva~V~--~GrIl~EmgG~~~~~~Ar~al~~aa~klp~ 169 (221)
T KOG3422|consen 133 HWVARVK--AGRILFEMGGDVEEEEARQALLQAAHKLPF 169 (221)
T ss_pred eeEEEec--CCcEEEEeCCcccHHHHHHHHHHHHhcCCc
Confidence 4999999 777777888889999999999999988754
No 25
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=29.31 E-value=39 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.804 Sum_probs=13.8
Q ss_pred eEEeeccCccHHHHHHHH
Q 029068 39 ARIWLGSYDTAEKAARAF 56 (199)
Q Consensus 39 kri~LGtf~t~eeAA~AY 56 (199)
..+|||+|.|.++-..=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 469999999988765543
No 26
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=28.85 E-value=1.1e+02 Score=24.02 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=27.4
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHh
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCL 63 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l 63 (199)
.|+|+|. .+..-+-++. .+++.|..|...|+.+|
T Consensus 91 ~~varV~--~G~ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 91 YWVAVVK--PGKILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEEC--CCCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 3999999 5556666666 89999999999988775
No 27
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=27.84 E-value=1.1e+02 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=29.0
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcC
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRG 65 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G 65 (199)
-|+|+|. .+..-+-++. .+.+.|..|...|+.+|-+
T Consensus 92 ~~varVk--~G~iifEi~~-~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 92 YWVAVVK--PGRILFEIAG-VSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEEEC--CCCEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 3999999 5666666666 8999999999999888754
No 28
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=26.68 E-value=2.1e+02 Score=20.81 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=24.1
Q ss_pred CcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcCC
Q 029068 26 GKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGR 66 (199)
Q Consensus 26 gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G~ 66 (199)
||-.-+-+.|..|+.+.||+ +.++|..+=-+|-..+...
T Consensus 25 ~k~Yy~Yr~P~tGk~~~LG~--d~~~Ai~~A~eaN~~i~~~ 63 (75)
T PF09003_consen 25 GKGYYQYRNPITGKEHGLGT--DRAEAIAQAIEANLRIAEQ 63 (75)
T ss_dssp --SEEEEE-TTTS-EEEEES---HHHHHHHHHHHHHHHTSS
T ss_pred ceeEEEEecCCCCceeeCCC--CHHHHHHHHHHHHHHHHHh
Confidence 44233456789999999999 7777777766666666443
No 29
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=24.59 E-value=1.4e+02 Score=21.57 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=19.8
Q ss_pred CCCcEEEEEeeCCCCeEEee----ccCccHHHHHH
Q 029068 24 KWGKYVSEIRLPNSRARIWL----GSYDTAEKAAR 54 (199)
Q Consensus 24 ~~gkW~A~I~~~~~~kri~L----Gtf~t~eeAA~ 54 (199)
+.+.|.|+|..-+..++.-+ --|.|+++|..
T Consensus 14 ~~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~ 48 (71)
T PF12286_consen 14 KRNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQA 48 (71)
T ss_pred cCCceeeeeeeeecCceeEEEecccCcccHHHHHH
Confidence 35889999985444333222 35899888653
No 30
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.50 E-value=3.5e+02 Score=22.36 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 12 RSDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 12 ~n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
=+..+|-|+.+| ..-|-.+-|- .+||-+-.|. .+.|++.+|.+.....|.
T Consensus 122 YePe~fpglvyR~~~pk~~~lIF--~SGKvvitGa-ks~~~~~~a~~~i~~~l~ 172 (174)
T cd04518 122 YEPEQFPGLVYRLDEPKVVLLLF--SSGKMVITGA-KSEEDAKRAVEKLLSRLK 172 (174)
T ss_pred cCcccCceEEEEecCCcEEEEEe--CCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 356789999777 3356666666 8999888887 788999999888776654
No 31
>PRK00394 transcription factor; Reviewed
Probab=21.27 E-value=3.4e+02 Score=22.55 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=37.0
Q ss_pred CCCceeeEEeC-CCCcEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhc
Q 029068 13 SDSRYKGVRKR-KWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLR 64 (199)
Q Consensus 13 n~S~yrGV~~r-~~gkW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~ 64 (199)
+..+|-|+..| +.-|=.+.|. .+||-+-.|. .+.|+|..|-++.+..+.
T Consensus 31 ePe~fpgli~Rl~~Pk~t~lIf--~sGKiv~tGa-~S~~~a~~a~~~~~~~l~ 80 (179)
T PRK00394 31 NPEQFPGLVYRLEDPKIAALIF--RSGKVVCTGA-KSVEDLHEAVKIIIKKLK 80 (179)
T ss_pred CcccCceEEEEecCCceEEEEE--cCCcEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 44578998766 3456667777 8999888888 467889999888877764
No 32
>CHL00044 rpl16 ribosomal protein L16
Probab=20.74 E-value=1.9e+02 Score=23.07 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=27.1
Q ss_pred cEEEEEeeCCCCeEEeeccCccHHHHHHHHHHHHHHhcC
Q 029068 27 KYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRG 65 (199)
Q Consensus 27 kW~A~I~~~~~~kri~LGtf~t~eeAA~AYd~aa~~l~G 65 (199)
-|+|+|+ .+..-+-++. .+++.|..|...|+.+|-.
T Consensus 92 ~~va~V~--~G~ilfEi~g-~~~~~ak~al~~a~~KLP~ 127 (135)
T CHL00044 92 YWVAVVK--PGRILYEMGG-VSETIARAAIKIAAYKMPI 127 (135)
T ss_pred EEEEEEC--CCcEEEEEeC-CCHHHHHHHHHHHhhcCCC
Confidence 3999999 5555555665 5678999999998887744
Done!