Query 029070
Match_columns 199
No_of_seqs 222 out of 1305
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 1.9E-32 6.4E-37 210.6 15.0 164 6-173 4-179 (192)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 2.9E-32 9.7E-37 197.4 8.0 124 9-172 2-131 (131)
3 2xqn_T Testin, TESS; metal-bin 100.0 1.6E-31 5.4E-36 192.2 7.5 121 8-168 2-125 (126)
4 1rut_X Flinc4, fusion protein 100.0 2.3E-31 7.9E-36 203.9 6.3 126 8-173 4-135 (188)
5 2jtn_A LIM domain-binding prot 100.0 2.4E-29 8.2E-34 191.7 9.1 122 6-168 57-181 (182)
6 2rgt_A Fusion of LIM/homeobox 100.0 3.3E-29 1.1E-33 188.8 8.9 122 8-170 5-129 (169)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.3E-26 4.4E-31 160.3 5.1 97 7-143 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 2E-25 6.8E-30 159.5 3.5 114 7-174 3-120 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 1.1E-22 3.9E-27 143.5 6.3 110 7-175 1-113 (114)
10 1x63_A Skeletal muscle LIM-pro 99.8 4.3E-20 1.5E-24 122.6 4.2 80 55-174 1-81 (82)
11 1x3h_A Leupaxin; paxillin fami 99.8 4.3E-20 1.5E-24 122.0 3.7 78 55-173 1-78 (80)
12 2cuq_A Four and A half LIM dom 99.8 7.1E-20 2.4E-24 121.0 4.0 78 55-173 1-78 (80)
13 2ehe_A Four and A half LIM dom 99.8 2.7E-20 9.1E-25 123.6 1.4 79 55-173 1-80 (82)
14 1a7i_A QCRP2 (LIM1); LIM domai 99.8 1.7E-19 5.7E-24 119.5 3.4 66 4-69 2-67 (81)
15 2dlo_A Thyroid receptor-intera 99.8 4.2E-19 1.4E-23 117.5 4.0 63 110-173 16-79 (81)
16 2cu8_A Cysteine-rich protein 2 99.7 1.1E-18 3.8E-23 114.1 5.3 70 3-72 3-73 (76)
17 1iml_A CRIP, cysteine rich int 99.7 8.9E-19 3E-23 114.6 4.6 60 10-69 1-61 (76)
18 2egq_A FHL1 protein; LIM domai 99.7 6.9E-19 2.3E-23 115.4 2.9 73 55-167 1-77 (77)
19 2d8y_A Eplin protein; LIM doma 99.7 7E-18 2.4E-22 114.1 6.5 74 8-81 14-87 (91)
20 2d8y_A Eplin protein; LIM doma 99.7 1.1E-17 3.9E-22 113.0 7.4 75 109-183 15-89 (91)
21 1x6a_A LIMK-2, LIM domain kina 99.7 2.3E-18 7.9E-23 113.9 3.5 77 55-172 1-79 (81)
22 2dj7_A Actin-binding LIM prote 99.7 6.5E-18 2.2E-22 111.5 5.2 65 7-72 13-77 (80)
23 2cur_A Skeletal muscle LIM-pro 99.7 1.2E-17 4.2E-22 107.1 4.7 63 7-70 3-65 (69)
24 1nyp_A Pinch protein; LIM doma 99.7 8.1E-18 2.8E-22 107.0 3.5 62 8-70 4-65 (66)
25 2d8z_A Four and A half LIM dom 99.7 2E-17 6.9E-22 106.3 5.1 64 8-72 4-67 (70)
26 2d8x_A Protein pinch; LIM doma 99.7 2.1E-17 7.1E-22 106.3 4.7 64 7-71 3-66 (70)
27 2dar_A PDZ and LIM domain prot 99.7 3E-17 1E-21 110.7 5.6 65 7-72 23-87 (90)
28 2cu8_A Cysteine-rich protein 2 99.7 4.4E-17 1.5E-21 106.4 5.9 69 105-173 5-74 (76)
29 1x68_A FHL5 protein; four-and- 99.7 1.1E-17 3.8E-22 109.3 2.9 62 8-69 4-68 (76)
30 1wyh_A SLIM 2, skeletal muscle 99.7 2.9E-17 9.8E-22 106.1 4.6 65 8-72 4-69 (72)
31 1g47_A Pinch protein; LIM doma 99.7 1.9E-17 6.5E-22 108.4 3.8 68 5-72 7-75 (77)
32 1x4l_A Skeletal muscle LIM-pro 99.7 2E-17 6.7E-22 107.0 3.6 64 7-70 3-69 (72)
33 1x4k_A Skeletal muscle LIM-pro 99.7 3.7E-17 1.3E-21 105.6 4.8 65 8-72 4-69 (72)
34 1x62_A C-terminal LIM domain p 99.7 2E-17 6.8E-22 108.9 3.5 65 7-72 13-77 (79)
35 1x64_A Alpha-actinin-2 associa 99.6 8.1E-17 2.8E-21 108.4 4.3 64 8-72 24-87 (89)
36 1a7i_A QCRP2 (LIM1); LIM domai 99.6 9.1E-17 3.1E-21 106.2 4.0 70 108-177 6-76 (81)
37 1x63_A Skeletal muscle LIM-pro 99.6 1.3E-16 4.4E-21 105.7 4.7 66 8-73 14-80 (82)
38 2dj7_A Actin-binding LIM prote 99.6 1.7E-16 5.9E-21 104.7 5.3 64 109-173 15-78 (80)
39 1x3h_A Leupaxin; paxillin fami 99.6 1.8E-16 6E-21 104.5 5.2 63 8-71 14-76 (80)
40 1x61_A Thyroid receptor intera 99.6 1.4E-16 4.6E-21 103.0 4.5 62 8-69 4-66 (72)
41 1v6g_A Actin binding LIM prote 99.6 6.8E-17 2.3E-21 106.8 3.1 76 56-172 2-78 (81)
42 2dlo_A Thyroid receptor-intera 99.6 2.3E-16 7.9E-21 104.2 5.2 64 7-71 13-77 (81)
43 2cor_A Pinch protein; LIM doma 99.6 9.9E-17 3.4E-21 105.6 3.3 64 7-72 13-76 (79)
44 1nyp_A Pinch protein; LIM doma 99.6 2E-16 6.8E-21 100.5 4.2 61 110-171 6-66 (66)
45 2l4z_A DNA endonuclease RBBP8, 99.6 2.4E-16 8.1E-21 112.3 5.0 61 9-69 61-123 (123)
46 2cuq_A Four and A half LIM dom 99.6 2.9E-16 1E-20 103.4 5.0 64 8-72 14-77 (80)
47 2co8_A NEDD9 interacting prote 99.6 7.2E-17 2.5E-21 107.0 1.6 64 6-69 12-77 (82)
48 1wig_A KIAA1808 protein; LIM d 99.6 1.7E-16 5.8E-21 102.9 3.3 61 8-69 4-65 (73)
49 3f6q_B LIM and senescent cell 99.6 2.3E-16 7.7E-21 101.7 3.9 62 8-69 10-72 (72)
50 1wyh_A SLIM 2, skeletal muscle 99.6 5.3E-16 1.8E-20 100.1 5.5 64 110-173 6-70 (72)
51 2dar_A PDZ and LIM domain prot 99.6 1.7E-15 5.9E-20 102.0 7.9 65 108-173 24-88 (90)
52 1g47_A Pinch protein; LIM doma 99.6 4.6E-16 1.6E-20 101.7 4.9 66 109-174 11-77 (77)
53 2ehe_A Four and A half LIM dom 99.6 1.2E-16 3.9E-21 105.9 1.9 64 8-71 14-78 (82)
54 1x68_A FHL5 protein; four-and- 99.6 3.5E-16 1.2E-20 102.1 4.1 68 110-177 6-76 (76)
55 2cur_A Skeletal muscle LIM-pro 99.6 1E-15 3.4E-20 98.0 5.9 63 110-173 6-68 (69)
56 1iml_A CRIP, cysteine rich int 99.6 7.5E-16 2.6E-20 100.5 5.4 67 110-176 1-68 (76)
57 2d8z_A Four and A half LIM dom 99.6 1E-15 3.4E-20 98.3 5.7 63 110-173 6-68 (70)
58 1b8t_A Protein (CRP1); LIM dom 99.6 4.2E-16 1.4E-20 119.3 4.6 62 8-69 114-175 (192)
59 1x4k_A Skeletal muscle LIM-pro 99.6 1.1E-15 3.6E-20 98.7 5.7 64 110-173 6-70 (72)
60 1x64_A Alpha-actinin-2 associa 99.6 3.8E-15 1.3E-19 100.1 8.1 64 109-173 25-88 (89)
61 1x4l_A Skeletal muscle LIM-pro 99.6 1.1E-15 3.6E-20 98.7 4.9 64 109-172 5-71 (72)
62 2d8x_A Protein pinch; LIM doma 99.6 2.5E-15 8.5E-20 96.4 6.4 64 109-173 5-68 (70)
63 2iyb_E Testin, TESS, TES; LIM 99.6 5.4E-16 1.9E-20 98.2 3.2 59 9-67 2-64 (65)
64 1x62_A C-terminal LIM domain p 99.6 5.3E-16 1.8E-20 102.0 2.8 64 109-173 15-78 (79)
65 1j2o_A FLIN2, fusion of rhombo 99.6 2E-15 7E-20 106.1 6.0 66 109-174 3-70 (114)
66 2egq_A FHL1 protein; LIM domai 99.6 1.2E-15 4.1E-20 99.8 4.1 59 8-66 14-76 (77)
67 2l3k_A Rhombotin-2, linker, LI 99.6 2.8E-15 9.5E-20 106.8 6.3 69 110-178 9-79 (123)
68 1x6a_A LIMK-2, LIM domain kina 99.5 3E-15 1E-19 98.8 4.3 62 8-70 14-77 (81)
69 2l3k_A Rhombotin-2, linker, LI 99.5 1E-14 3.6E-19 103.8 6.9 68 10-77 9-78 (123)
70 1x61_A Thyroid receptor intera 99.5 6.5E-15 2.2E-19 94.9 5.3 61 110-170 6-67 (72)
71 2cor_A Pinch protein; LIM doma 99.5 7E-15 2.4E-19 96.6 5.2 63 109-173 15-77 (79)
72 1wig_A KIAA1808 protein; LIM d 99.5 9.4E-15 3.2E-19 94.6 5.5 62 110-172 6-68 (73)
73 2co8_A NEDD9 interacting prote 99.5 3.7E-15 1.3E-19 98.7 3.4 63 108-170 14-78 (82)
74 3f6q_B LIM and senescent cell 99.5 6E-15 2.1E-19 94.9 4.1 61 109-169 11-72 (72)
75 1m3v_A FLIN4, fusion of the LI 99.5 1.7E-14 5.9E-19 102.5 6.0 65 109-173 5-73 (122)
76 2cup_A Skeletal muscle LIM-pro 99.5 1.5E-14 5E-19 99.4 5.1 68 109-176 5-73 (101)
77 2l4z_A DNA endonuclease RBBP8, 99.5 1.2E-14 4.2E-19 103.4 4.3 61 109-169 61-123 (123)
78 2xqn_T Testin, TESS; metal-bin 99.5 2E-14 6.9E-19 102.6 5.1 67 110-176 4-70 (126)
79 2iyb_E Testin, TESS, TES; LIM 99.5 3.1E-14 1.1E-18 90.0 4.2 58 110-167 3-64 (65)
80 2jtn_A LIM domain-binding prot 99.5 2.2E-14 7.5E-19 108.8 4.2 67 109-176 60-126 (182)
81 1v6g_A Actin binding LIM prote 99.4 2.2E-14 7.4E-19 94.6 1.8 61 8-69 14-75 (81)
82 2xjy_A Rhombotin-2; oncoprotei 99.4 1.8E-13 6E-18 98.3 5.6 64 110-173 3-70 (131)
83 2rgt_A Fusion of LIM/homeobox 99.4 5.6E-13 1.9E-17 99.9 5.2 65 110-175 7-71 (169)
84 1rut_X Flinc4, fusion protein 99.3 7.4E-13 2.5E-17 100.9 3.3 64 110-173 6-73 (188)
85 1zfo_A LAsp-1; LIM domain, zin 98.4 7.1E-08 2.4E-12 51.3 1.3 29 9-37 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.2 4E-07 1.4E-11 48.3 1.6 28 110-137 4-31 (31)
87 2ysm_A Myeloid/lymphoid or mix 91.3 0.4 1.4E-05 32.4 5.3 97 6-166 4-104 (111)
88 2kwj_A Zinc finger protein DPF 85.7 0.69 2.4E-05 31.4 3.3 49 110-167 59-109 (114)
89 2ecy_A TNF receptor-associated 80.5 1.6 5.3E-05 26.1 3.1 33 36-69 15-47 (66)
90 2djb_A Polycomb group ring fin 79.5 1.7 5.7E-05 26.5 3.1 34 36-69 15-48 (72)
91 1jjd_A Metallothionein, SMTA; 79.3 1.3 4.6E-05 26.0 2.4 28 139-166 10-38 (55)
92 2ct0_A Non-SMC element 1 homol 79.0 0.9 3.1E-05 28.4 1.7 31 107-137 13-43 (74)
93 1t1h_A Gspef-atpub14, armadill 78.9 1.9 6.5E-05 26.6 3.3 34 35-69 7-40 (78)
94 2ct0_A Non-SMC element 1 homol 77.0 1.1 3.6E-05 28.1 1.6 31 7-37 13-43 (74)
95 3vk6_A E3 ubiquitin-protein li 74.9 1.8 6E-05 28.8 2.2 30 39-68 4-33 (101)
96 1g25_A CDK-activating kinase a 74.3 3.2 0.00011 24.5 3.3 33 37-69 4-40 (65)
97 1weo_A Cellulose synthase, cat 74.0 4.2 0.00014 26.3 3.8 41 8-69 15-55 (93)
98 2eqg_A Tumor necrosis factor, 73.9 2.4 8.2E-05 23.5 2.3 20 150-169 21-40 (49)
99 3lrq_A E3 ubiquitin-protein li 73.0 2.8 9.5E-05 27.4 3.0 33 37-69 23-55 (100)
100 2yur_A Retinoblastoma-binding 72.2 3.1 0.00011 25.4 2.9 33 36-69 15-48 (74)
101 2ckl_B Ubiquitin ligase protei 70.0 3.6 0.00012 29.5 3.2 35 35-69 53-87 (165)
102 2ysl_A Tripartite motif-contai 69.3 3 0.0001 25.1 2.4 33 36-69 20-52 (73)
103 3ztg_A E3 ubiquitin-protein li 68.5 5 0.00017 25.4 3.4 33 36-69 13-46 (92)
104 1chc_A Equine herpes virus-1 r 68.4 5.1 0.00018 23.7 3.3 32 38-69 7-38 (68)
105 2y43_A E3 ubiquitin-protein li 68.0 3.5 0.00012 26.7 2.6 34 36-69 22-55 (99)
106 1e4u_A Transcriptional repress 67.2 6.1 0.00021 24.6 3.5 33 37-69 12-47 (78)
107 4ap4_A E3 ubiquitin ligase RNF 67.1 5.6 0.00019 26.8 3.6 58 9-69 48-111 (133)
108 1jm7_B BARD1, BRCA1-associated 66.2 3.3 0.00011 27.8 2.2 33 36-68 22-54 (117)
109 2gvi_A Conserved hypothetical 64.2 1.7 5.7E-05 32.8 0.4 31 36-66 172-202 (204)
110 4gne_A Histone-lysine N-methyl 63.9 13 0.00043 24.9 4.7 41 9-63 15-59 (107)
111 2cs3_A Protein C14ORF4, MY039 63.4 3.5 0.00012 26.1 1.7 49 109-162 15-63 (93)
112 2gvi_A Conserved hypothetical 63.1 2.1 7.3E-05 32.2 0.8 30 137-166 173-202 (204)
113 2csy_A Zinc finger protein 183 62.9 5.7 0.0002 24.5 2.8 32 37-69 16-47 (81)
114 3hct_A TNF receptor-associated 62.6 5.5 0.00019 26.7 2.8 32 37-69 19-50 (118)
115 1x4j_A Ring finger protein 38; 62.1 5.4 0.00019 24.2 2.5 29 9-37 23-53 (75)
116 3hcs_A TNF receptor-associated 61.8 5.4 0.00018 28.6 2.8 33 36-69 18-50 (170)
117 3nw0_A Non-structural maintena 61.6 3.4 0.00012 31.8 1.8 43 106-148 177-229 (238)
118 2ect_A Ring finger protein 126 60.8 9.5 0.00032 23.2 3.5 29 9-37 15-45 (78)
119 2ckl_A Polycomb group ring fin 60.3 5.5 0.00019 26.2 2.5 34 36-69 15-48 (108)
120 2ecv_A Tripartite motif-contai 60.3 8.4 0.00029 23.6 3.2 32 37-69 20-51 (85)
121 1rmd_A RAG1; V(D)J recombinati 59.6 6.4 0.00022 26.2 2.7 33 36-69 23-55 (116)
122 2ecm_A Ring finger and CHY zin 59.0 7.7 0.00026 21.7 2.7 32 38-69 7-41 (55)
123 3fl2_A E3 ubiquitin-protein li 58.9 7.2 0.00025 26.3 2.9 33 36-69 52-84 (124)
124 2ecw_A Tripartite motif-contai 58.0 8.5 0.00029 23.6 2.9 32 37-69 20-51 (85)
125 2cs3_A Protein C14ORF4, MY039 57.5 3.8 0.00013 25.9 1.1 31 10-40 16-46 (93)
126 1jm7_A BRCA1, breast cancer ty 57.3 9.9 0.00034 24.9 3.3 32 37-69 22-53 (112)
127 4ayc_A E3 ubiquitin-protein li 56.2 7.2 0.00025 27.0 2.6 31 37-68 54-84 (138)
128 3ng2_A RNF4, snurf, ring finge 56.1 4.3 0.00015 24.2 1.2 33 37-69 11-49 (71)
129 2xeu_A Ring finger protein 4; 55.4 4.1 0.00014 23.7 1.0 41 9-49 3-57 (64)
130 2ea6_A Ring finger protein 4; 55.2 5 0.00017 23.7 1.4 33 37-69 16-54 (69)
131 1z6u_A NP95-like ring finger p 54.9 8.9 0.0003 27.1 2.9 33 36-69 78-110 (150)
132 2c2l_A CHIP, carboxy terminus 53.4 11 0.00038 28.9 3.5 36 33-69 205-240 (281)
133 3v43_A Histone acetyltransfera 52.4 4.8 0.00016 27.0 1.1 29 110-138 62-93 (112)
134 2kr4_A Ubiquitin conjugation f 52.4 9.7 0.00033 24.0 2.5 35 34-69 12-46 (85)
135 1wgm_A Ubiquitin conjugation f 52.3 11 0.00039 24.5 2.9 35 34-69 20-55 (98)
136 2ct2_A Tripartite motif protei 52.1 13 0.00044 23.0 3.1 33 37-69 16-51 (88)
137 2kre_A Ubiquitin conjugation f 51.7 11 0.00038 24.6 2.8 35 34-69 27-61 (100)
138 2d8t_A Dactylidin, ring finger 51.2 8 0.00027 23.2 1.9 31 37-68 16-46 (71)
139 2ep4_A Ring finger protein 24; 50.1 15 0.00051 22.0 3.1 33 37-69 16-50 (74)
140 2d8v_A Zinc finger FYVE domain 47.7 7.9 0.00027 23.5 1.4 14 55-68 26-39 (67)
141 2e5r_A Dystrobrevin alpha; ZZ 46.1 20 0.0007 21.3 3.1 37 129-167 6-45 (63)
142 3l11_A E3 ubiquitin-protein li 45.2 5.7 0.00019 26.4 0.5 31 37-68 16-46 (115)
143 2egp_A Tripartite motif-contai 44.7 12 0.00041 22.7 2.0 31 37-68 13-43 (79)
144 1iym_A EL5; ring-H2 finger, ub 43.8 18 0.00063 20.0 2.6 13 56-68 28-40 (55)
145 2d8s_A Cellular modulator of i 42.2 23 0.00079 22.0 3.1 30 8-37 14-49 (80)
146 1wev_A Riken cDNA 1110020M19; 41.9 19 0.00065 22.9 2.7 53 110-167 17-73 (88)
147 2dmj_A Poly (ADP-ribose) polym 41.9 8 0.00028 25.8 0.9 15 9-23 25-39 (106)
148 3od8_A Poly [ADP-ribose] polym 41.4 6.4 0.00022 26.8 0.3 15 9-23 38-52 (116)
149 2l0b_A E3 ubiquitin-protein li 41.2 12 0.00042 23.7 1.7 29 9-37 40-70 (91)
150 3odc_A Poly [ADP-ribose] polym 40.6 6.7 0.00023 26.5 0.3 15 9-23 19-33 (111)
151 2ysj_A Tripartite motif-contai 40.3 24 0.00083 20.2 2.8 33 36-69 20-52 (63)
152 2f42_A STIP1 homology and U-bo 39.9 22 0.00075 26.0 3.1 35 34-69 104-138 (179)
153 2kiz_A E3 ubiquitin-protein li 39.9 27 0.00092 20.4 3.0 14 56-69 36-49 (69)
154 1v9x_A Poly (ADP-ribose) polym 39.5 9.8 0.00033 25.8 1.0 16 9-24 20-35 (114)
155 2ku3_A Bromodomain-containing 38.7 20 0.00069 21.9 2.3 56 2-68 9-68 (71)
156 2ecg_A Baculoviral IAP repeat- 38.6 21 0.00072 21.6 2.4 29 37-66 26-55 (75)
157 3knv_A TNF receptor-associated 38.4 5.1 0.00018 28.1 -0.6 34 35-69 30-63 (141)
158 2ecl_A Ring-box protein 2; RNF 38.1 11 0.00038 23.4 1.0 40 8-47 14-75 (81)
159 1bor_A Transcription factor PM 37.7 10 0.00034 21.7 0.7 27 37-64 7-33 (56)
160 1uw0_A DNA ligase III; DNA rep 37.0 13 0.00043 25.3 1.2 16 9-24 15-30 (117)
161 2k16_A Transcription initiatio 34.8 22 0.00074 21.7 2.0 51 110-169 19-71 (75)
162 2lo3_A SAGA-associated factor 34.3 12 0.00041 20.5 0.6 13 10-22 18-30 (44)
163 3htk_C E3 SUMO-protein ligase 34.0 25 0.00086 27.5 2.6 35 35-69 180-214 (267)
164 2ecj_A Tripartite motif-contai 33.0 44 0.0015 18.5 3.1 32 37-69 16-47 (58)
165 2ecn_A Ring finger protein 141 32.8 14 0.00048 21.8 0.9 27 9-37 15-41 (70)
166 2vpb_A Hpygo1, pygopus homolog 32.0 18 0.0006 21.7 1.2 31 6-36 5-39 (65)
167 2yu4_A E3 SUMO-protein ligase 30.4 23 0.00079 22.6 1.7 33 36-69 7-40 (94)
168 2e6r_A Jumonji/ARID domain-con 29.6 1.1E+02 0.0038 19.4 5.5 51 110-169 17-69 (92)
169 1znf_A 31ST zinc finger from X 27.1 25 0.00086 15.3 1.1 12 37-48 2-13 (27)
170 2bay_A PRE-mRNA splicing facto 26.4 39 0.0013 19.7 2.0 32 37-69 4-36 (61)
171 2cs2_A Poly [ADP-ribose] polym 26.2 20 0.00068 24.9 0.8 15 9-23 27-41 (134)
172 2lbz_A Thuricin17, thurincin H 25.3 23 0.00079 17.3 0.7 13 35-47 6-18 (31)
173 3d00_A Tungsten formylmethanof 25.0 17 0.00058 26.9 0.3 26 35-66 162-187 (191)
174 2vnf_A ING 4, P29ING4, inhibit 24.9 44 0.0015 19.5 2.1 45 8-65 9-58 (60)
175 3c6w_A P28ING5, inhibitor of g 24.8 35 0.0012 19.9 1.6 45 7-64 7-56 (59)
176 1ard_A Yeast transcription fac 24.8 28 0.00096 15.4 1.0 12 37-48 3-14 (29)
177 2puy_A PHD finger protein 21A; 24.7 1.1E+02 0.0036 17.6 4.1 47 110-168 6-54 (60)
178 2csz_A Synaptotagmin-like prot 24.5 42 0.0014 20.9 1.9 10 110-119 26-35 (76)
179 2g6q_A Inhibitor of growth pro 24.2 57 0.002 19.1 2.5 44 8-64 10-58 (62)
180 1vd4_A Transcription initiatio 24.1 11 0.00038 21.6 -0.8 35 10-48 15-51 (62)
181 2kvh_A Zinc finger and BTB dom 24.0 24 0.00082 15.6 0.6 12 37-48 4-15 (27)
182 4av1_A Poly [ADP-ribose] polym 23.9 17 0.00056 27.7 0.0 15 9-23 143-157 (223)
183 1paa_A Yeast transcription fac 22.9 35 0.0012 15.2 1.2 13 37-49 3-15 (30)
184 2m0e_A Zinc finger and BTB dom 22.2 36 0.0012 14.9 1.1 13 37-49 3-15 (29)
185 2vut_I AREA, nitrogen regulato 22.2 65 0.0022 17.5 2.3 27 139-165 4-30 (43)
186 1twf_L ABC10-alpha, DNA-direct 21.9 36 0.0012 20.8 1.3 24 37-64 29-52 (70)
187 2vje_B MDM4 protein; proto-onc 21.8 44 0.0015 19.4 1.7 32 38-69 9-42 (63)
188 2lvu_A Zinc finger and BTB dom 26.9 20 0.00068 15.7 0.0 12 37-48 3-14 (26)
189 2ea5_A Cell growth regulator w 21.2 51 0.0017 19.5 1.9 29 37-66 16-45 (68)
190 1klr_A Zinc finger Y-chromosom 21.0 38 0.0013 14.9 1.1 13 37-49 3-15 (30)
191 1wen_A Inhibitor of growth fam 20.8 94 0.0032 18.7 3.1 43 9-64 16-63 (71)
192 2dip_A Zinc finger SWIM domain 20.8 75 0.0026 20.7 2.7 36 132-168 28-66 (98)
193 1mm2_A MI2-beta; PHD, zinc fin 20.3 78 0.0027 18.4 2.5 45 110-166 10-56 (61)
194 1rik_A E6APC1 peptide; E6-bind 20.2 34 0.0012 15.1 0.8 13 37-49 3-15 (29)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=100.00 E-value=1.9e-32 Score=210.63 Aligned_cols=164 Identities=26% Similarity=0.566 Sum_probs=133.5
Q ss_pred CCCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCCcc
Q 029070 6 AGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIA 85 (199)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
.++.++|..|+++|..++.+.++|+.||++||+|..|+++|.+..|+.++|++||+.||.+++++++...... .++.
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~---~g~~ 80 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMG---AGTL 80 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCC---CCCC
T ss_pred CCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccc---cccE
Confidence 4567899999999987889999999999999999999999999999999999999999999999987543221 2333
Q ss_pred CCCCCCCCCC------------CCcccccccCCCCCCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeee
Q 029070 86 KPEKPIDGEK------------PNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIA 153 (199)
Q Consensus 86 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 153 (199)
..+++|+... ...+.+...+ +..++|++|+++|.+.+.|.++++.||++||+|..|+++|..+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKV-GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCcccccccc-CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 4444443110 0011111111 23578999999999888888999999999999999999999888999
Q ss_pred eCCccccHhHHHhHhcCCCC
Q 029070 154 HEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 154 ~~g~~yC~~c~~~~~~~k~~ 173 (199)
.+|++||..||.++|++++.
T Consensus 160 ~~g~~yC~~cy~~~f~~kc~ 179 (192)
T 1b8t_A 160 KDGEIYCKGCYAKNFGPKGF 179 (192)
T ss_dssp ETTEEEEHHHHHHHTCCCCC
T ss_pred cCCEEeCHHHHHHhcCCcCC
Confidence 99999999999999999997
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.97 E-value=2.9e-32 Score=197.39 Aligned_cols=124 Identities=23% Similarity=0.465 Sum_probs=112.8
Q ss_pred CccccccCceeecceeEEeCCcccccccceeccCcccccC--CcccccCCcccccccHHHHhhccCCCCCCCCCCCCccC
Q 029070 9 QQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL--GNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAK 86 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
.++|.+|+++|...+++.|+++.||++||+|..|+.+|.+ ..|+.++|++||+.||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 5789999999986667999999999999999999999964 579999999999999999997
Q ss_pred CCCCCCCCCCCcccccccCCCCCC--CCcCCCceEecCcc-eeecCccccccCeecccCCCCCC-CCCeeeeCCccccHh
Q 029070 87 PEKPIDGEKPNVAKVSTMFGGTRE--KCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVIS-PSNYIAHEGRLYCKH 162 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~ 162 (199)
+ +|.+|+++|.+.+. +.+.++.||++||+|..|+++|. +..|+..++++||..
T Consensus 65 -----------------------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~ 121 (131)
T 2xjy_A 65 -----------------------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQ 121 (131)
T ss_dssp -----------------------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGG
T ss_pred -----------------------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHH
Confidence 6 99999999998664 66999999999999999999995 667999999999999
Q ss_pred HHHhHhcCCC
Q 029070 163 HHNQLIKEKG 172 (199)
Q Consensus 163 c~~~~~~~k~ 172 (199)
||.++|+.+|
T Consensus 122 c~~~~~~~~~ 131 (131)
T 2xjy_A 122 DIYEWTKING 131 (131)
T ss_dssp GHHHHHHHHC
T ss_pred HHHHHhhccC
Confidence 9999998764
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=192.24 Aligned_cols=121 Identities=23% Similarity=0.563 Sum_probs=112.2
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCCccCC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKP 87 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
..++|.+|+++|..++++.++|+.||++||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------------------
Confidence 35789999999987889999999999999999999999998899999999999999999997
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcc-eeecCcccc--ccCeecccCCCCCCCCCeeeeCCccccHhHH
Q 029070 88 EKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEK-VSVNGTPYH--KSCFKCSHGGCVISPSNYIAHEGRLYCKHHH 164 (199)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~ 164 (199)
++|++|+++|.+.+. |.++++.|| ++||+|..|+++|.+..|+..+|++||..++
T Consensus 64 ----------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~ 121 (126)
T 2xqn_T 64 ----------------------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121 (126)
T ss_dssp ----------------------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHH
T ss_pred ----------------------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHh
Confidence 899999999997544 779999999 9999999999999988899999999999888
Q ss_pred HhHh
Q 029070 165 NQLI 168 (199)
Q Consensus 165 ~~~~ 168 (199)
.++|
T Consensus 122 ~~~f 125 (126)
T 2xqn_T 122 KKRM 125 (126)
T ss_dssp HHSC
T ss_pred hhhc
Confidence 7765
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=2.3e-31 Score=203.88 Aligned_cols=126 Identities=22% Similarity=0.533 Sum_probs=112.0
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccC--CcccccCCcccccccHHHHhhccCCCCCCCCCCCCcc
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL--GNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIA 85 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
..++|.+|+++|...+++.|+++.||++||+|..|+.+|.. ..|+.++|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---------------- 67 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---------------- 67 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS----------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc----------------
Confidence 46899999999986667899999999999999999999986 679999999999999999997
Q ss_pred CCCCCCCCCCCCcccccccCCCCCC--CCcCCCceEecCcc-eeecCccccccCeecccCCCCCC-CCCeeeeCCccccH
Q 029070 86 KPEKPIDGEKPNVAKVSTMFGGTRE--KCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVIS-PSNYIAHEGRLYCK 161 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~ 161 (199)
+ +|.+|+++|.+.+. +.+.++.||+.||+|..|+++|. +..|+..++++||.
T Consensus 68 ------------------------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~ 123 (188)
T 1rut_X 68 ------------------------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCE 123 (188)
T ss_dssp ------------------------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEG
T ss_pred ------------------------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECH
Confidence 5 79999999998765 56999999999999999999996 55788999999999
Q ss_pred hHHHhHhcCCCC
Q 029070 162 HHHNQLIKEKGN 173 (199)
Q Consensus 162 ~c~~~~~~~k~~ 173 (199)
.||.+++++++.
T Consensus 124 ~c~~~~~~~~~~ 135 (188)
T 1rut_X 124 HDRPTALINGHL 135 (188)
T ss_dssp GGCCTTTC----
T ss_pred HHHHHHhccccc
Confidence 999999988885
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=2.4e-29 Score=191.73 Aligned_cols=122 Identities=25% Similarity=0.518 Sum_probs=108.1
Q ss_pred CCCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCCcc
Q 029070 6 AGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIA 85 (199)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
....++|.+|+++|...+++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc----------------
Confidence 4457899999999987667899999999999999999999998765 79999999999999998
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcc-eeecCccccccCeecccCCCCCCC-CCee-eeCCccccHh
Q 029070 86 KPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVISP-SNYI-AHEGRLYCKH 162 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~ 162 (199)
++|.+|+++|.+.+. +.+.++.||+.||+|..|+++|.. ..|+ ..+|++||..
T Consensus 120 ------------------------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~ 175 (182)
T 2jtn_A 120 ------------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKA 175 (182)
T ss_dssp ------------------------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHH
T ss_pred ------------------------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHH
Confidence 899999999998765 469999999999999999999984 4555 4589999999
Q ss_pred HHHhHh
Q 029070 163 HHNQLI 168 (199)
Q Consensus 163 c~~~~~ 168 (199)
||.++.
T Consensus 176 cy~~~~ 181 (182)
T 2jtn_A 176 DYETAK 181 (182)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 998763
No 6
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=3.3e-29 Score=188.81 Aligned_cols=122 Identities=25% Similarity=0.532 Sum_probs=108.3
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCCccCC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKP 87 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
+.++|.+|+++|...+++.++|+.||+.||+|..|+++|.+..| .++|++||+.||.++++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~------------------ 65 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG------------------ 65 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS------------------
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccccccc------------------
Confidence 46899999999986667899999999999999999999998765 79999999999999998
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcce-eecCccccccCeecccCCCCCC-CCCee-eeCCccccHhHH
Q 029070 88 EKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKV-SVNGTPYHKSCFKCSHGGCVIS-PSNYI-AHEGRLYCKHHH 164 (199)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v-~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~yC~~c~ 164 (199)
++|.+|+++|.+.+.+ .+.+..||+.||+|..|+++|. +..|+ ..+|++||..||
T Consensus 66 ----------------------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~ 123 (169)
T 2rgt_A 66 ----------------------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123 (169)
T ss_dssp ----------------------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHH
T ss_pred ----------------------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHH
Confidence 8999999999987764 5999999999999999999998 44554 458999999999
Q ss_pred HhHhcC
Q 029070 165 NQLIKE 170 (199)
Q Consensus 165 ~~~~~~ 170 (199)
.+++..
T Consensus 124 ~~~~~~ 129 (169)
T 2rgt_A 124 ETAKQG 129 (169)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 998765
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.93 E-value=1.3e-26 Score=160.27 Aligned_cols=97 Identities=26% Similarity=0.608 Sum_probs=89.0
Q ss_pred CCCccccccCceeec-ceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCCcc
Q 029070 7 GTQQKCMACDKTVYL-VDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIA 85 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
...++|.+|+++|.. +++|.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---------------- 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---------------- 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----------------
Confidence 457899999999975 678999999999999999999999998889999999999999998887
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCc-ceeecCccccccCeecccCC
Q 029070 86 KPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTE-KVSVNGTPYHKSCFKCSHGG 143 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~~~~~~~H~~Cf~C~~C~ 143 (199)
++|.+|+++|.+++ .|.++++.||++||+|..|+
T Consensus 67 ------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 ------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ------------------------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ------------------------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 89999999999765 47799999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=2e-25 Score=159.46 Aligned_cols=114 Identities=18% Similarity=0.308 Sum_probs=99.7
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccC--CcccccCCcccccccHHHHhhccCCCCCCCCCCCCc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL--GNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKI 84 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 84 (199)
...++|.+|+++|...+++.++++.||+.||+|..|+.+|.+ ..|+.++|++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--------------- 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---------------
Confidence 347899999999987667999999999999999999999973 579999999999999999998
Q ss_pred cCCCCCCCCCCCCcccccccCCCCCC--CCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHh
Q 029070 85 AKPEKPIDGEKPNVAKVSTMFGGTRE--KCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKH 162 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~ 162 (199)
+ +|++|+++|.+.+ +++.++ .+|.++.|+.++++|||..
T Consensus 68 -------------------------~~~~C~~C~~~I~~~~-~~~~g~-------------~~l~g~~f~~~~~~~yC~~ 108 (122)
T 1m3v_A 68 -------------------------NSGAGGSGGHMGSGGD-VMVVGE-------------PTLMGGEFGDEDERLITRL 108 (122)
T ss_dssp -------------------------CCCSSSCSSCCSCCEE-SSSSSS-------------SSCCSCTTCCTTCCCCEEC
T ss_pred -------------------------CCCccccCCCCcCchh-eEEcCC-------------cCCCCCccEecCCEeEccC
Confidence 6 9999999998755 555542 3577889999999999999
Q ss_pred HHHhHhcCCCCC
Q 029070 163 HHNQLIKEKGNL 174 (199)
Q Consensus 163 c~~~~~~~k~~~ 174 (199)
|+.+++.++++-
T Consensus 109 ~~~~~~~~~g~~ 120 (122)
T 1m3v_A 109 ENTQFDAANGID 120 (122)
T ss_dssp TTTTTTCCSCCC
T ss_pred cchhchhhcCCC
Confidence 999999888863
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=1.1e-22 Score=143.45 Aligned_cols=110 Identities=19% Similarity=0.253 Sum_probs=91.3
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccC--CcccccCCcccccccHHHHhhccCCCCCCCCCCCCc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL--GNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKI 84 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 84 (199)
++.++|.+|+++|...+++.++++.||+.||+|..|+++|.+ ..|+.++|++||+.||.++|+
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~--------------- 65 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG--------------- 65 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT---------------
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC---------------
Confidence 357899999999986668999999999999999999999985 579999999999999999998
Q ss_pred cCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcceeecCccccccCeecccCCCC-CCCCCeeeeCCccccHhH
Q 029070 85 AKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCV-ISPSNYIAHEGRLYCKHH 163 (199)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~g~~yC~~c 163 (199)
++|..|.. .+ ++. |+.+ |.++.|+..++++||..|
T Consensus 66 -------------------------~~c~~c~~----~~-~~~--------------~~~~~~~g~~f~~~~~~~~C~~~ 101 (114)
T 1j2o_A 66 -------------------------SGGHMGSG----GD-VMV--------------VGEPTLMGGEFGDEDERLITRLE 101 (114)
T ss_dssp -------------------------SCCSSCBS----CS-CCC--------------SSCSSTTSSBCCCSSSCCCEEEE
T ss_pred -------------------------cccCcCCC----Cc-eeE--------------cCCccCCCCeeEEcCCEeecchh
Confidence 77776652 11 111 2344 567789999999999999
Q ss_pred HHhHhcCCCCCC
Q 029070 164 HNQLIKEKGNLS 175 (199)
Q Consensus 164 ~~~~~~~k~~~~ 175 (199)
+.++..++++.+
T Consensus 102 ~~~~~~~~g~~~ 113 (114)
T 1j2o_A 102 NTQFDAANGIDD 113 (114)
T ss_dssp CTTCCCTTSSCC
T ss_pred hhccccccCCCC
Confidence 999988887654
No 10
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.3e-20 Score=122.57 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=73.2
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcc-eeecCcccc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEK-VSVNGTPYH 133 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~~~~~~~H 133 (199)
++.+||++||.++++ ++|++|+++|.+.+. |.+.++.||
T Consensus 1 ~~~~yC~~cy~~~~~----------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H 40 (82)
T 1x63_A 1 GSSGSSGKCTTREDS----------------------------------------PKCKGCFKAIVAGDQNVEYKGTVWH 40 (82)
T ss_dssp CCSCCCCCCCSCCCS----------------------------------------CBCSSSCCBCCSSSCEEECSSCEEE
T ss_pred CCCcCchhHHccccC----------------------------------------CcCccCCcccccCceEEEECccccc
Confidence 468999999988776 899999999997765 779999999
Q ss_pred ccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCC
Q 029070 134 KSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNL 174 (199)
Q Consensus 134 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~ 174 (199)
++||+|..|+++|..+.|+..++++||..||.++|+++++.
T Consensus 41 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~~ 81 (82)
T 1x63_A 41 KDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81 (82)
T ss_dssp TTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCSC
T ss_pred cccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCCC
Confidence 99999999999999888999999999999999999999864
No 11
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.3e-20 Score=122.02 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=72.0
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcceeecCccccc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHK 134 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~ 134 (199)
+|++||+.||.++++ ++|++|+++|.+ +.|.++++.||+
T Consensus 1 gg~~yC~~~y~~~~~----------------------------------------~~C~~C~~~I~~-~~v~a~~~~~H~ 39 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS----------------------------------------PKCGGCNRPVLE-NYLSAMDTVWHP 39 (80)
T ss_dssp CCCCCCCCCCCCCCS----------------------------------------CBCTTTCCBCCS-SCEEETTEEECT
T ss_pred CCCccchhHHhhhcC----------------------------------------CccccCCCeecc-eeEEECCCeEec
Confidence 478999999988776 899999999986 558899999999
Q ss_pred cCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 135 SCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 135 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.||+|..|+++|..+.|+..++++||+.||.++|++++.
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~ 78 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPS 78 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCC
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCC
Confidence 999999999999988899999999999999999999984
No 12
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=7.1e-20 Score=120.98 Aligned_cols=78 Identities=17% Similarity=0.462 Sum_probs=72.0
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcceeecCccccc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHK 134 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~ 134 (199)
+|++||+.||.++++ ++|++|+++|.+. .|.++++.||+
T Consensus 1 gg~~yC~~cy~~~~~----------------------------------------~~C~~C~~~I~~~-~v~a~~~~~H~ 39 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA----------------------------------------PRCARCSKTLTQG-GVTYRDQPWHR 39 (80)
T ss_dssp CCCCSCCCCCCCCSS----------------------------------------CCCTTTCCCCCSC-CEESSSSEECT
T ss_pred CCcEEcHHHHccccC----------------------------------------CcCCCCCCEecCc-EEEECCchhhh
Confidence 588999999988776 8999999999864 58899999999
Q ss_pred cCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 135 SCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 135 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
+||+|..|+++|.+..|+..++++||..||.++|++++.
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 78 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPS 78 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTT
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCC
Confidence 999999999999988899999999999999999999985
No 13
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-20 Score=123.63 Aligned_cols=79 Identities=14% Similarity=0.410 Sum_probs=71.9
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecC-cceeecCcccc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPT-EKVSVNGTPYH 133 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~v~~~~~~~H 133 (199)
+|++||+.||.++++ ++|++|+++|.+. ..+.++++.||
T Consensus 1 ~g~~yC~~~y~~~~~----------------------------------------~~C~~C~~~I~~~~~~~~a~~~~~H 40 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA----------------------------------------NTCAECQQLIGHDSRELFYEDRHFH 40 (82)
T ss_dssp CCCCCCCCCCCCCCS----------------------------------------CBCTTTCCBCCSSCCBCCCSSCCCB
T ss_pred CCceechhHhCcccC----------------------------------------CcCccCCCccccCcEEEEeCCcccc
Confidence 589999999988887 8999999999954 44668999999
Q ss_pred ccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 134 KSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 134 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
+.||+|..|+++|.+..|+..++++||..||.++|++++.
T Consensus 41 ~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 41 EGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp TTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred ccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 9999999999999988899999999999999999999885
No 14
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.76 E-value=1.7e-19 Score=119.50 Aligned_cols=66 Identities=27% Similarity=0.690 Sum_probs=58.1
Q ss_pred ccCCCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 4 AFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 4 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
++.+..++|..|+++|..++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 2 ~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp ------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 456778999999999987889999999999999999999999998899999999999999999998
No 15
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=4.2e-19 Score=117.55 Aligned_cols=63 Identities=17% Similarity=0.450 Sum_probs=57.4
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeee-CCccccHhHHHhHhcCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAH-EGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~~~k~~ 173 (199)
++|++|+++|.+ +.|.++++.||++||+|..|+++|.+..|+.. +|++||..||.++|++++.
T Consensus 16 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~ 79 (81)
T 2dlo_A 16 EKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPS 79 (81)
T ss_dssp CBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSC
T ss_pred CccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCC
Confidence 899999999985 45889999999999999999999998777766 7999999999999999984
No 16
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.1e-18 Score=114.09 Aligned_cols=70 Identities=33% Similarity=0.754 Sum_probs=64.4
Q ss_pred cccCCCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCccccc-ccHHHHhhccC
Q 029070 3 AAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCR-PHFDQLFKRTG 72 (199)
Q Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~c~~~~~~~~~ 72 (199)
++|++..++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+.+++++||+ .||.++|++++
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc 73 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSC
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhccccc
Confidence 56777899999999999878999999999999999999999999988899999999999 79999998443
No 17
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=8.9e-19 Score=114.56 Aligned_cols=60 Identities=35% Similarity=0.871 Sum_probs=57.2
Q ss_pred ccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCccccc-ccHHHHhh
Q 029070 10 QKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCR-PHFDQLFK 69 (199)
Q Consensus 10 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~-~c~~~~~~ 69 (199)
++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+.++|++||. .||.++++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 5799999999878999999999999999999999999998999999999999 69999998
No 18
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-19 Score=115.35 Aligned_cols=73 Identities=22% Similarity=0.587 Sum_probs=65.9
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEec----CcceeecCc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYP----TEKVSVNGT 130 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~----~~~v~~~~~ 130 (199)
++++||++||.++++ ++|++|+++|.+ .+.+.++++
T Consensus 1 g~~~yC~~cy~~~~~----------------------------------------~~C~~C~~~I~~~g~~~~~~~a~~~ 40 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA----------------------------------------KKCAGCKNPITGFGKGSSVVAYEGQ 40 (77)
T ss_dssp CCSSCCTTCCCSCCC----------------------------------------CCCSSSCCCCCCCSSCCCEEEETTE
T ss_pred CCCeEchhHhchhhC----------------------------------------ccCcccCCcccCCCCCceeEEECcc
Confidence 478999999988886 899999999995 355789999
Q ss_pred cccccCeecccCCCCCCCCCeeeeCCccccHhHHHhH
Q 029070 131 PYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQL 167 (199)
Q Consensus 131 ~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 167 (199)
.||+.||+|..|+++|.+..|+..++++||..||.++
T Consensus 41 ~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 41 SWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp EEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred eeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 9999999999999999988899999999999999763
No 19
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=7e-18 Score=114.09 Aligned_cols=74 Identities=43% Similarity=1.055 Sum_probs=67.7
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGT 81 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~ 81 (199)
..++|..|+++|...+.|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+++++++++++.+...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~ 87 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSG 87 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCC
Confidence 46799999999987789999999999999999999999998889999999999999999999998877776543
No 20
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.1e-17 Score=113.04 Aligned_cols=75 Identities=44% Similarity=0.808 Sum_probs=69.8
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCCCcCCcccc
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQLEGEHEK 183 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~~~~~~~~~ 183 (199)
..+|..|+++|.+.+.|.++++.||+.||+|..|+++|....|+..++++||..||.++|++++.++++++....
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~ 89 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPS 89 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCC
Confidence 489999999999888888999999999999999999999878999999999999999999999999999887644
No 21
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.3e-18 Score=113.92 Aligned_cols=77 Identities=22% Similarity=0.438 Sum_probs=67.9
Q ss_pred CCcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcceeecCccccc
Q 029070 55 EGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHK 134 (199)
Q Consensus 55 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~ 134 (199)
++.+||+.||.++++ ++|++|+++|. .+.|.++++.||+
T Consensus 1 g~~~yC~~~y~~~~~----------------------------------------~~C~~C~~~I~-~~~~~a~~~~~H~ 39 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG----------------------------------------EFCHGCSLLMT-GPFMVAGEFKYHP 39 (81)
T ss_dssp CCCCCCCCCSSCCSS----------------------------------------CBCTTTCCBCC-SCCBCCTTCCBCT
T ss_pred CCCccchhHHhhhcC----------------------------------------CcCccCCCCcC-ceEEEECCceecc
Confidence 367999999988887 89999999999 5557899999999
Q ss_pred cCeecccCCCCCCC-CCee-eeCCccccHhHHHhHhcCCC
Q 029070 135 SCFKCSHGGCVISP-SNYI-AHEGRLYCKHHHNQLIKEKG 172 (199)
Q Consensus 135 ~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~c~~~~~~~k~ 172 (199)
+||+|..|+++|.. ..|. ..++++||..||.++|+++.
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~ 79 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTS
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCC
Confidence 99999999999974 5666 48999999999999998765
No 22
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=6.5e-18 Score=111.55 Aligned_cols=65 Identities=26% Similarity=0.599 Sum_probs=59.5
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
...++|.+|+++|..+++|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C 77 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGP 77 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCS
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCC
Confidence 457899999999987899999999999999999999999985 69999999999999999998544
No 23
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.2e-17 Score=107.07 Aligned_cols=63 Identities=21% Similarity=0.578 Sum_probs=58.5
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKR 70 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (199)
...++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcC
Confidence 35789999999996 6789999999999999999999999988999999999999999999983
No 24
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=8.1e-18 Score=106.96 Aligned_cols=62 Identities=24% Similarity=0.507 Sum_probs=58.2
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhc
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKR 70 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (199)
..++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 3678999999997 8899999999999999999999999988999999999999999999874
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2e-17 Score=106.31 Aligned_cols=64 Identities=23% Similarity=0.579 Sum_probs=58.9
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
..++|..|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 67 (70)
T 2d8z_A 4 GSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67 (70)
T ss_dssp CCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCC
T ss_pred CCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhcccc
Confidence 4689999999996 678999999999999999999999998899999999999999999998443
No 26
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.1e-17 Score=106.27 Aligned_cols=64 Identities=23% Similarity=0.481 Sum_probs=59.5
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhcc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRT 71 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 71 (199)
++.++|..|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 55789999999996 78899999999999999999999999999999999999999999999843
No 27
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3e-17 Score=110.73 Aligned_cols=65 Identities=25% Similarity=0.557 Sum_probs=60.0
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
...++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c 87 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCC
Confidence 34789999999994 889999999999999999999999998899999999999999999999554
No 28
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.4e-17 Score=106.44 Aligned_cols=69 Identities=32% Similarity=0.618 Sum_probs=63.0
Q ss_pred CCCCCCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccH-hHHHhHhcCCCC
Q 029070 105 FGGTREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCK-HHHNQLIKEKGN 173 (199)
Q Consensus 105 ~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~~k~~ 173 (199)
+.+..++|++|+++|.+.+.|.++++.||++||+|..|+++|.+..|+..++++||. .||.++|++++.
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~ 74 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPS 74 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCS
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccC
Confidence 334458999999999988888899999999999999999999988899999999999 799999999984
No 29
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.1e-17 Score=109.29 Aligned_cols=62 Identities=18% Similarity=0.439 Sum_probs=57.3
Q ss_pred CCccccccCceeec---ceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYL---VDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
..++|.+|+++|.. .++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 36899999999973 378999999999999999999999998889999999999999998887
No 30
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.9e-17 Score=106.12 Aligned_cols=65 Identities=28% Similarity=0.602 Sum_probs=59.6
Q ss_pred CCccccccCceeecc-eeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 8 TQQKCMACDKTVYLV-DKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
..++|.+|+++|..+ +++.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcC
Confidence 467999999999874 78999999999999999999999999899999999999999999998544
No 31
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.9e-17 Score=108.38 Aligned_cols=68 Identities=26% Similarity=0.591 Sum_probs=60.0
Q ss_pred cCCCCccccccCceeecce-eEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 5 FAGTQQKCMACDKTVYLVD-KLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 5 ~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
.....++|.+|+++|...+ ++.++|+.||+.||+|..|+++|.++.|+.++|++||+.||.+++++++
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C 75 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCW 75 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC-
T ss_pred cCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhccc
Confidence 3455789999999998544 6789999999999999999999999899999999999999999998443
No 32
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2e-17 Score=106.98 Aligned_cols=64 Identities=16% Similarity=0.402 Sum_probs=58.4
Q ss_pred CCCccccccCceeec---ceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhc
Q 029070 7 GTQQKCMACDKTVYL---VDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKR 70 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 70 (199)
...++|.+|+++|.. .++|.++++.||++||+|..|+++|.+..|+.+++++||..||.++++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 457899999999974 3689999999999999999999999988899999999999999998874
No 33
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=3.7e-17 Score=105.61 Aligned_cols=65 Identities=20% Similarity=0.552 Sum_probs=59.4
Q ss_pred CCccccccCceeecc-eeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 8 TQQKCMACDKTVYLV-DKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
..++|..|+++|..+ .+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C 69 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCC
Confidence 367999999999875 48999999999999999999999999999999999999999999998543
No 34
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=2e-17 Score=108.90 Aligned_cols=65 Identities=20% Similarity=0.388 Sum_probs=59.6
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
...++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+++++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 34689999999997 578999999999999999999999998889999999999999999998654
No 35
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=8.1e-17 Score=108.36 Aligned_cols=64 Identities=27% Similarity=0.506 Sum_probs=58.9
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
..++|..|++.|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 4578999999997 688999999999999999999999998899999999999999999998544
No 36
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.64 E-value=9.1e-17 Score=106.20 Aligned_cols=70 Identities=29% Similarity=0.573 Sum_probs=57.5
Q ss_pred CCCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC-CCCc
Q 029070 108 TREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN-LSQL 177 (199)
Q Consensus 108 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~-~~~~ 177 (199)
..++|..|+++|.+.+.|.+.++.||++||+|..|+++|....|+..++++||..||.++|++++. ..++
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g 76 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQG 76 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC---------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCc
Confidence 348999999999888878899999999999999999999988899999999999999999999996 4433
No 37
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.3e-16 Score=105.68 Aligned_cols=66 Identities=26% Similarity=0.583 Sum_probs=60.1
Q ss_pred CCccccccCceeecce-eEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCC
Q 029070 8 TQQKCMACDKTVYLVD-KLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGS 73 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 73 (199)
..++|.+|+++|..++ +|.++++.||++||+|..|+++|.++.|+.+++++||+.||.++++++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 3679999999997655 68999999999999999999999998999999999999999999996653
No 38
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=104.65 Aligned_cols=64 Identities=23% Similarity=0.597 Sum_probs=59.8
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.++|.+|+++|.+.+.|.++++.||++||+|..|+++|.+ .|+..++++||..||.++|++++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~ 78 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPS 78 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCST
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCC
Confidence 4899999999998888899999999999999999999986 689999999999999999999985
No 39
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.8e-16 Score=104.51 Aligned_cols=63 Identities=24% Similarity=0.634 Sum_probs=58.4
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhcc
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRT 71 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 71 (199)
..++|.+|+++|. ++.|.++++.||+.||+|..|+++|.++.|+.+++++||+.||.+++++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~ 76 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSG 76 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSS
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCC
Confidence 3679999999997 58899999999999999999999999889999999999999999999843
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.4e-16 Score=102.96 Aligned_cols=62 Identities=23% Similarity=0.554 Sum_probs=57.5
Q ss_pred CCccccccCceeecc-eeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLV-DKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
..++|.+|+++|... .++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 468999999999864 48999999999999999999999988889999999999999999987
No 41
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=6.8e-17 Score=106.81 Aligned_cols=76 Identities=20% Similarity=0.440 Sum_probs=65.0
Q ss_pred CcccccccHHHHhhccCCCCCCCCCCCCccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCcceeecCcccccc
Q 029070 56 GVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVSVNGTPYHKS 135 (199)
Q Consensus 56 g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~ 135 (199)
..+||+.||.++++ ++|++|+++|.+ +.|.++++.||++
T Consensus 2 ~~~yC~~dy~~~~~----------------------------------------~~C~~C~~~I~~-~~v~a~~~~wH~~ 40 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG----------------------------------------TRCFSCDQFIEG-EVVSALGKTYHPD 40 (81)
T ss_dssp CCCCCCSCGGGSCC----------------------------------------CBCTTTCCBCCS-CCEEETTEEECTT
T ss_pred CCCcchHHHHhHhC----------------------------------------CcCccccCEecc-ceEEECCceeCcc
Confidence 56899999999987 899999999984 5688999999999
Q ss_pred CeecccCCCCCCCCCeeeeCC-ccccHhHHHhHhcCCC
Q 029070 136 CFKCSHGGCVISPSNYIAHEG-RLYCKHHHNQLIKEKG 172 (199)
Q Consensus 136 Cf~C~~C~~~l~~~~~~~~~g-~~yC~~c~~~~~~~k~ 172 (199)
||+|..|+++|..+.++..++ .+||..|+.+++...+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~~ 78 (81)
T 1v6g_A 41 CFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSGP 78 (81)
T ss_dssp TSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCCC
T ss_pred CCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCCC
Confidence 999999999998666555555 5799999988776654
No 42
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.3e-16 Score=104.23 Aligned_cols=64 Identities=25% Similarity=0.518 Sum_probs=57.8
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCccccc-CCcccccccHHHHhhcc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSF-EGVLYCRPHFDQLFKRT 71 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~~~ 71 (199)
...++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+.. +|++||+.||.++|+++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~ 77 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASG 77 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSS
T ss_pred cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCc
Confidence 45789999999997 678999999999999999999999998888876 78999999999999843
No 43
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=9.9e-17 Score=105.57 Aligned_cols=64 Identities=25% Similarity=0.480 Sum_probs=57.6
Q ss_pred CCCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
...++|.+|+++|. +++|.++++.||++||+|..|+++|.+.. +.++|++||+.||.++|+|..
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSS
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCC
Confidence 44789999999997 88899999999999999999999999774 589999999999999998543
No 44
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.63 E-value=2e-16 Score=100.45 Aligned_cols=61 Identities=23% Similarity=0.442 Sum_probs=57.3
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEK 171 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k 171 (199)
++|++|+++|. .+.|.+.++.||++||+|..|+++|.+..|+..+|.+||..||.++|++|
T Consensus 6 ~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 89999999998 55678999999999999999999999888999999999999999999986
No 45
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=112.29 Aligned_cols=61 Identities=23% Similarity=0.537 Sum_probs=55.8
Q ss_pred CccccccCceeecceeEEeCCcccccccceeccCcccccC--CcccccCCcccccccHHHHhh
Q 029070 9 QQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL--GNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.++|.+|+++|....++.++++.||+.||+|..|+++|.+ ..|+.++|++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 5799999999986667999999999999999999999973 579999999999999999874
No 46
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.9e-16 Score=103.44 Aligned_cols=64 Identities=25% Similarity=0.560 Sum_probs=58.9
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccC
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTG 72 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~ 72 (199)
..++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.+++++++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c 77 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCST
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCC
Confidence 4689999999996 578999999999999999999999998889999999999999999998554
No 47
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=7.2e-17 Score=106.97 Aligned_cols=64 Identities=34% Similarity=0.867 Sum_probs=57.9
Q ss_pred CCCCccccccCceeecceeEEeCCcccccccceeccCcccccCCccc--ccCCcccccccHHHHhh
Q 029070 6 AGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYN--SFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~c~~~~~~ 69 (199)
.++.++|.+|+++|+.++.|.++++.||+.||+|..|+++|....|+ .++|++||+.||.++++
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 34578999999999888899999999999999999999999998887 57999999999987775
No 48
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.7e-16 Score=102.86 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=56.1
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCccccc-CCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLK-LGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
..++|.+|+++|. +++|.++++.||++||+|..|+++|. +..|+.+++++||..||.++++
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4689999999996 68899999999999999999999998 6679999999999999998876
No 49
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.62 E-value=2.3e-16 Score=101.72 Aligned_cols=62 Identities=29% Similarity=0.733 Sum_probs=57.0
Q ss_pred CCccccccCceeeccee-EEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLVDK-LTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
..++|.+|+++|..++. +.++++.||+.||+|..|+++|.++.|+.++|++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46799999999987774 689999999999999999999998899999999999999999874
No 50
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.3e-16 Score=100.10 Aligned_cols=64 Identities=23% Similarity=0.563 Sum_probs=59.6
Q ss_pred CCCcCCCceEecC-cceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 110 EKCVGCKNTVYPT-EKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~-~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
++|..|+++|.+. +.+.+.++.||++||+|..|+++|....|+..++.+||..||.++|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPS 70 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCC
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCC
Confidence 8999999999975 556799999999999999999999988899999999999999999999985
No 51
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=1.7e-15 Score=102.00 Aligned_cols=65 Identities=17% Similarity=0.452 Sum_probs=59.7
Q ss_pred CCCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 108 TREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 108 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
..++|+.|+++|. .+.|.++++.||++||+|..|+++|.+..|+..++.+||..||.++|++++.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~ 88 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPS 88 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCC
T ss_pred CCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCC
Confidence 3489999999996 4558899999999999999999999988899999999999999999999985
No 52
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.6e-16 Score=101.70 Aligned_cols=66 Identities=33% Similarity=0.616 Sum_probs=58.4
Q ss_pred CCCCcCCCceEecCcc-eeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCC
Q 029070 109 REKCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNL 174 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~ 174 (199)
.++|++|+++|.+.+. +.+.++.||++||+|..|+++|..+.|+..+|.+||..||.++|++++.+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~~ 77 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWIL 77 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC---
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccCC
Confidence 3899999999997665 56999999999999999999999878999999999999999999999853
No 53
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-16 Score=105.92 Aligned_cols=64 Identities=22% Similarity=0.568 Sum_probs=58.0
Q ss_pred CCccccccCceeec-ceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhcc
Q 029070 8 TQQKCMACDKTVYL-VDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRT 71 (199)
Q Consensus 8 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 71 (199)
..++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~ 78 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSG 78 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGS
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCC
Confidence 36799999999974 56789999999999999999999999889999999999999999999843
No 54
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=3.5e-16 Score=102.13 Aligned_cols=68 Identities=13% Similarity=0.470 Sum_probs=61.8
Q ss_pred CCCcCCCceEec---CcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCCCc
Q 029070 110 EKCVGCKNTVYP---TEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQL 177 (199)
Q Consensus 110 ~~C~~C~~~I~~---~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~~~ 177 (199)
++|++|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+..++++||..||.++|++++..+.|
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~sg 76 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSSG 76 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCCC
Confidence 899999999995 35578999999999999999999999888999999999999999999999976543
No 55
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1e-15 Score=98.01 Aligned_cols=63 Identities=19% Similarity=0.547 Sum_probs=58.7
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
++|..|+++|.+ +.|.+.++.||++||+|..|+++|.+..|+..++++||..||.++|++++.
T Consensus 6 ~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 68 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSS 68 (69)
T ss_dssp CCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCC
T ss_pred CCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCC
Confidence 899999999985 458899999999999999999999988899999999999999999999873
No 56
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7.5e-16 Score=100.51 Aligned_cols=67 Identities=30% Similarity=0.636 Sum_probs=61.7
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccH-hHHHhHhcCCCCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCK-HHHNQLIKEKGNLSQ 176 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~~k~~~~~ 176 (199)
++|++|+++|.+.+.|.++++.||++||+|..|+++|..+.|+..+|.+||. .||.++|++++.-..
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcC
Confidence 5799999999988878899999999999999999999988899999999999 799999999997544
No 57
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1e-15 Score=98.26 Aligned_cols=63 Identities=25% Similarity=0.535 Sum_probs=58.7
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
++|..|+++|.+. .|.+.++.||++||+|..|+++|.+..|+..++++||..||.++|++++.
T Consensus 6 ~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~ 68 (70)
T 2d8z_A 6 SGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPS 68 (70)
T ss_dssp CBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCT
T ss_pred CCCcccCCeeccc-eEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccC
Confidence 8999999999854 48899999999999999999999988899999999999999999999985
No 58
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.60 E-value=4.2e-16 Score=119.28 Aligned_cols=62 Identities=27% Similarity=0.739 Sum_probs=58.4
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC
Confidence 35679999999987888999999999999999999999998899999999999999999998
No 59
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.1e-15 Score=98.68 Aligned_cols=64 Identities=22% Similarity=0.556 Sum_probs=59.8
Q ss_pred CCCcCCCceEecCc-ceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 110 EKCVGCKNTVYPTE-KVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~-~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
++|++|+++|.+.+ .+.+.++.||++||+|..|+++|....|+..++.+||..||.++|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~ 70 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPS 70 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCC
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCC
Confidence 89999999999865 47799999999999999999999988899999999999999999999985
No 60
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=3.8e-15 Score=100.09 Aligned_cols=64 Identities=22% Similarity=0.451 Sum_probs=59.1
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.++|..|+++|.+ +.+.++++.||++||+|..|+++|....|+..++.+||..||.++|++|+.
T Consensus 25 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4899999999996 458899999999999999999999988899999999999999999999874
No 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.1e-15 Score=98.74 Aligned_cols=64 Identities=17% Similarity=0.523 Sum_probs=58.1
Q ss_pred CCCCcCCCceEec---CcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCC
Q 029070 109 REKCVGCKNTVYP---TEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKG 172 (199)
Q Consensus 109 ~~~C~~C~~~I~~---~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~ 172 (199)
.++|.+|+++|.+ .+.|.++++.||++||+|..|+++|.+..|+..++++||..||.++|+++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 3899999999996 345779999999999999999999998889999999999999999998875
No 62
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.5e-15 Score=96.43 Aligned_cols=64 Identities=19% Similarity=0.486 Sum_probs=58.4
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.++|..|+++|.+ +.|.+.++.||++||+|..|+++|....|+..++++||..||.++|+++..
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 4899999999984 558899999999999999999999988888999999999999999998763
No 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.58 E-value=5.4e-16 Score=98.18 Aligned_cols=59 Identities=24% Similarity=0.589 Sum_probs=53.9
Q ss_pred CccccccCceeec-ceeEEeCCcccc--cccceeccCcccccCCcccccCCcccc-cccHHHH
Q 029070 9 QQKCMACDKTVYL-VDKLTADNRIYH--KACFRCHHCKGTLKLGNYNSFEGVLYC-RPHFDQL 67 (199)
Q Consensus 9 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~CF~C~~C~~~L~~~~f~~~~g~~yC-~~c~~~~ 67 (199)
+++|.+|+++|.. ++.|.++++.|| ++||+|..|+++|.+..|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4689999999987 478999999999 999999999999998899999999999 8888654
No 64
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=5.3e-16 Score=102.03 Aligned_cols=64 Identities=17% Similarity=0.427 Sum_probs=58.8
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.++|..|+++|.+ +.|.++++.||+.||+|..|+++|....|+..++++||..||.++|++|+.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 4899999999986 468899999999999999999999877889999999999999999999874
No 65
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2e-15 Score=106.07 Aligned_cols=66 Identities=20% Similarity=0.448 Sum_probs=60.5
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCC--CCeeeeCCccccHhHHHhHhcCCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISP--SNYIAHEGRLYCKHHHNQLIKEKGNL 174 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~k~~~ 174 (199)
.++|++|+++|.+.+.+.++++.||+.||+|..|+++|.. ..|+.++|++||..||.++|++++..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~ 70 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHM 70 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCc
Confidence 4899999999997777889999999999999999999984 47999999999999999999999763
No 66
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=99.75 Aligned_cols=59 Identities=19% Similarity=0.523 Sum_probs=54.2
Q ss_pred CCccccccCceeec----ceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHH
Q 029070 8 TQQKCMACDKTVYL----VDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQ 66 (199)
Q Consensus 8 ~~~~C~~C~~~I~~----~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 66 (199)
..++|.+|+++|.+ .+.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 36899999999973 378999999999999999999999998889999999999999975
No 67
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.57 E-value=2.8e-15 Score=106.78 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=60.6
Q ss_pred CCCcCCCceEecCcc-eeecCccccccCeecccCCCCCC-CCCeeeeCCccccHhHHHhHhcCCCCCCCcC
Q 029070 110 EKCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVIS-PSNYIAHEGRLYCKHHHNQLIKEKGNLSQLE 178 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~c~~~~~~~k~~~~~~~ 178 (199)
.+|+.|+++|.+.+. +.++++.||+.||+|..|+++|. +..|+..++.+||..||.++|++++.++.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCC
Confidence 399999999997655 56999999999999999999995 5579999999999999999999998766544
No 68
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3e-15 Score=98.82 Aligned_cols=62 Identities=23% Similarity=0.482 Sum_probs=55.8
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccC-Cccc-ccCCcccccccHHHHhhc
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKL-GNYN-SFEGVLYCRPHFDQLFKR 70 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~-~~f~-~~~g~~yC~~c~~~~~~~ 70 (199)
..++|.+|+++|. +++|.++++.||++||+|..|+++|.. ..|. .+++++||+.||.+++++
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~ 77 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCT
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcC
Confidence 4678999999997 888999999999999999999999975 4566 589999999999999984
No 69
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.54 E-value=1e-14 Score=103.78 Aligned_cols=68 Identities=22% Similarity=0.558 Sum_probs=59.4
Q ss_pred ccccccCceeecce-eEEeCCcccccccceeccCccccc-CCcccccCCcccccccHHHHhhccCCCCCC
Q 029070 10 QKCMACDKTVYLVD-KLTADNRIYHKACFRCHHCKGTLK-LGNYNSFEGVLYCRPHFDQLFKRTGSLDKS 77 (199)
Q Consensus 10 ~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~ 77 (199)
++|..|+++|...+ ++.++++.||+.||+|..|+++|. +..|+.+++++||..||.+++++++....+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~ 78 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCC
Confidence 48999999998654 679999999999999999999994 456999999999999999999988755433
No 70
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=6.5e-15 Score=94.95 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=56.0
Q ss_pred CCCcCCCceEecCc-ceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcC
Q 029070 110 EKCVGCKNTVYPTE-KVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKE 170 (199)
Q Consensus 110 ~~C~~C~~~I~~~~-~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 170 (199)
++|.+|+++|.+.+ .+.++++.||+.||+|..|+++|.+..|+..++.+||..||.++|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 89999999999754 57799999999999999999999887899999999999999999863
No 71
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=7e-15 Score=96.62 Aligned_cols=63 Identities=21% Similarity=0.500 Sum_probs=56.5
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~ 173 (199)
.++|..|+++|. .+.|.++++.||++||+|..|+++|.+.. +.++|.+||..||.++|+++..
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 389999999999 45588999999999999999999999765 5889999999999999998764
No 72
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=9.4e-15 Score=94.56 Aligned_cols=62 Identities=15% Similarity=0.330 Sum_probs=56.2
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCC-CCCeeeeCCccccHhHHHhHhcCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVIS-PSNYIAHEGRLYCKHHHNQLIKEKG 172 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~c~~~~~~~k~ 172 (199)
++|++|+++|.+ +.|.++++.||++||+|..|+++|. +..|+..++++||..||.+++.++.
T Consensus 6 ~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~~ 68 (73)
T 1wig_A 6 SGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTEDS 68 (73)
T ss_dssp CSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSSC
T ss_pred CCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcccc
Confidence 899999999986 5578999999999999999999998 6788999999999999999887643
No 73
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.7e-15 Score=98.66 Aligned_cols=63 Identities=30% Similarity=0.693 Sum_probs=56.6
Q ss_pred CCCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCee--eeCCccccHhHHHhHhcC
Q 029070 108 TREKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYI--AHEGRLYCKHHHNQLIKE 170 (199)
Q Consensus 108 ~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~c~~~~~~~ 170 (199)
...+|.+|+++|.+.+.|.++++.||.+||+|..|+++|....|. ..+|++||+.||.++|+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 348999999999988888899999999999999999999988877 469999999999887653
No 74
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.52 E-value=6e-15 Score=94.92 Aligned_cols=61 Identities=34% Similarity=0.699 Sum_probs=56.1
Q ss_pred CCCCcCCCceEecCcc-eeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhc
Q 029070 109 REKCVGCKNTVYPTEK-VSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIK 169 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 169 (199)
.++|++|+++|.+.+. +.+.++.||+.||+|..|+++|..+.|+..+|++||..||.++|+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3899999999998876 469999999999999999999998788999999999999999885
No 75
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.7e-14 Score=102.51 Aligned_cols=65 Identities=18% Similarity=0.473 Sum_probs=59.6
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCC--CCCeeeeCCccccHhHHHhHhcC--CCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVIS--PSNYIAHEGRLYCKHHHNQLIKE--KGN 173 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~~--k~~ 173 (199)
.++|++|+++|.+.+.|.++++.||+.||+|..|+++|. +..|+..+|++||..||.++|++ +|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~ 73 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGG 73 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSS
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccc
Confidence 389999999999887788999999999999999999997 35789999999999999999999 776
No 76
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.5e-14 Score=99.38 Aligned_cols=68 Identities=16% Similarity=0.455 Sum_probs=61.6
Q ss_pred CCCCcCCCceEec-CcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCCC
Q 029070 109 REKCVGCKNTVYP-TEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQ 176 (199)
Q Consensus 109 ~~~C~~C~~~I~~-~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~~ 176 (199)
.++|++|+++|.+ .+.|.++++.||+.||+|..|+++|.+..|+..+|++||..||.++|++++....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~ 73 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCF 73 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSC
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCC
Confidence 3899999999985 5667899999999999999999999887899999999999999999999997443
No 77
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=103.36 Aligned_cols=61 Identities=18% Similarity=0.463 Sum_probs=55.9
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCC--CCCeeeeCCccccHhHHHhHhc
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVIS--PSNYIAHEGRLYCKHHHNQLIK 169 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~ 169 (199)
.++|++|+++|.+.+.+.++++.||+.||+|..|+++|. +..|+.++|.+||..||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 389999999999776688999999999999999999997 4589999999999999999985
No 78
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=102.60 Aligned_cols=67 Identities=15% Similarity=0.343 Sum_probs=62.1
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQ 176 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~~ 176 (199)
++|++|+++|.+.+.+.++++.||++||+|..|+++|.+..|+..+|++||..||.++|++++....
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~ 70 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCH 70 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTC
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccC
Confidence 8999999999987778899999999999999999999988899999999999999999999997433
No 79
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=89.97 Aligned_cols=58 Identities=26% Similarity=0.684 Sum_probs=53.3
Q ss_pred CCCcCCCceEecC-cceeecCcccc--ccCeecccCCCCCCCCCeeeeCCcccc-HhHHHhH
Q 029070 110 EKCVGCKNTVYPT-EKVSVNGTPYH--KSCFKCSHGGCVISPSNYIAHEGRLYC-KHHHNQL 167 (199)
Q Consensus 110 ~~C~~C~~~I~~~-~~v~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~c~~~~ 167 (199)
++|++|+++|.+. +.|.++++.|| ++||+|..|+++|.+..|+..+|+||| .+||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 7999999999974 56889999999 999999999999998889999999999 8999764
No 80
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.47 E-value=2.2e-14 Score=108.81 Aligned_cols=67 Identities=19% Similarity=0.429 Sum_probs=60.0
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCCC
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLSQ 176 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~~ 176 (199)
.++|.+|+++|.+.+.+.+.++.||+.||+|..|+++|.+..| .++|++||..||.++|+++|....
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~ 126 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQ 126 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTC
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCC
Confidence 3899999999998766779999999999999999999998664 789999999999999999997443
No 81
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2.2e-14 Score=94.63 Aligned_cols=61 Identities=23% Similarity=0.534 Sum_probs=53.2
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCc-ccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGV-LYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~-~yC~~c~~~~~~ 69 (199)
..++|..|+++|. +++|.++++.||++||+|..|+++|..+.|+..++. +||..||.+++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 3579999999997 789999999999999999999999998777766665 699999977664
No 82
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.42 E-value=1.8e-13 Score=98.29 Aligned_cols=64 Identities=19% Similarity=0.432 Sum_probs=58.7
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCC--CCCeeeeCCccccHhHHHhHhcC--CCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVIS--PSNYIAHEGRLYCKHHHNQLIKE--KGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~~--k~~ 173 (199)
++|++|+++|.+.+.|.++++.||++||+|..|+.+|. +..|+..+|++||..||.++|++ ++.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~ 70 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCA 70 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECT
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChh
Confidence 79999999999776688999999999999999999996 35799999999999999999998 675
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.36 E-value=5.6e-13 Score=99.85 Aligned_cols=65 Identities=18% Similarity=0.420 Sum_probs=59.3
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhcCCCCCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIKEKGNLS 175 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~k~~~~ 175 (199)
++|.+|+++|.+.+.+.++++.||+.||+|..|+++|.+.. +..+|++||..||.++|+++|...
T Consensus 7 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C 71 (169)
T 2rgt_A 7 PMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAAC 71 (169)
T ss_dssp CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTT
T ss_pred CccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccccccccc
Confidence 89999999999876678999999999999999999999866 478999999999999999999743
No 84
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.31 E-value=7.4e-13 Score=100.86 Aligned_cols=64 Identities=17% Similarity=0.452 Sum_probs=58.8
Q ss_pred CCCcCCCceEecCcceeecCccccccCeecccCCCCCCC--CCeeeeCCccccHhHHHhHhcC--CCC
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISP--SNYIAHEGRLYCKHHHNQLIKE--KGN 173 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~--k~~ 173 (199)
++|+.|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+..+|++||..||.++|++ +|.
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~ 73 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACS 73 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECT
T ss_pred CcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccc
Confidence 899999999997766789999999999999999999985 5899999999999999999998 575
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.40 E-value=7.1e-08 Score=51.28 Aligned_cols=29 Identities=38% Similarity=0.912 Sum_probs=27.5
Q ss_pred CccccccCceeecceeEEeCCcccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTADNRIYHKACF 37 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 37 (199)
.++|..|++.|+..|.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 56899999999999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.22 E-value=4e-07 Score=48.32 Aligned_cols=28 Identities=46% Similarity=0.954 Sum_probs=26.9
Q ss_pred CCCcCCCceEecCcceeecCccccccCe
Q 029070 110 EKCVGCKNTVYPTEKVSVNGTPYHKSCF 137 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~~~~~H~~Cf 137 (199)
++|..|++.|++.|.+.+.++.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 7999999999999999999999999998
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.28 E-value=0.4 Score=32.37 Aligned_cols=97 Identities=19% Similarity=0.362 Sum_probs=56.5
Q ss_pred CCCCccccccCceeecceeEE--eCCcccccccceeccCcccccCCcccccCCcccccccHHHHhhccCCCCCCCCCCCC
Q 029070 6 AGTQQKCMACDKTVYLVDKLT--ADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPK 83 (199)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~~~~--~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~ 83 (199)
......|..|+..-...+.|. .=++.||..|+.=.. . ....+..+|..|
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-----~----~~~~~~W~C~~C-------------------- 54 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-----T----PLKRAGWQCPEC-------------------- 54 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-----C----TTTSTTCCCTTT--------------------
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-----c----cccccCccCCcC--------------------
Confidence 345678999987632122232 225778888864321 1 123466777777
Q ss_pred ccCCCCCCCCCCCCcccccccCCCCCCCCcCCCceEecCccee--ecCccccccCeecccCCCCCCCCCeeeeCCccccH
Q 029070 84 IAKPEKPIDGEKPNVAKVSTMFGGTREKCVGCKNTVYPTEKVS--VNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCK 161 (199)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~ 161 (199)
..|..|++...+..++. .=++.||..|..- +|.. .-.+.-+|.
T Consensus 55 --------------------------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~ 99 (111)
T 2ysm_A 55 --------------------------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP-----VMKS----VPTNGWKCK 99 (111)
T ss_dssp --------------------------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSS-----CCSS----CCSSCCCCH
T ss_pred --------------------------CcccccCccCCCCCeeECCCCCcHHhHHhcCC-----cccc----CCCCCcCCc
Confidence 46888887654434344 3367899998753 2321 123567898
Q ss_pred hHHHh
Q 029070 162 HHHNQ 166 (199)
Q Consensus 162 ~c~~~ 166 (199)
.|...
T Consensus 100 ~C~~c 104 (111)
T 2ysm_A 100 NCRIC 104 (111)
T ss_dssp HHHCC
T ss_pred CCcCc
Confidence 88654
No 88
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.68 E-value=0.69 Score=31.45 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCcCCCceEecCccee--ecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhH
Q 029070 110 EKCVGCKNTVYPTEKVS--VNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQL 167 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 167 (199)
..|..|++...+.+.|. .=++.||..|..= +|.. .-.|.-+|..|....
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----pl~~----~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP-----PVAE----PPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS-----CCSS----CCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCC-----CccC----CCCCCeECccccchh
Confidence 56888877644444444 2357799888652 2322 224567899886543
No 89
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.46 E-value=1.6 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=24.0
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHH
Confidence 37788888877643 3345688899999988763
No 90
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.50 E-value=1.7 Score=26.48 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=23.9
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+......=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 3678888887765333335688899999887664
No 91
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=79.29 E-value=1.3 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=21.7
Q ss_pred cccCCCCCCCCCeeeeCCcccc-HhHHHh
Q 029070 139 CSHGGCVISPSNYIAHEGRLYC-KHHHNQ 166 (199)
Q Consensus 139 C~~C~~~l~~~~~~~~~g~~yC-~~c~~~ 166 (199)
|..|+..++...-+..+|+.|| +.|...
T Consensus 10 C~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 10 CEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp STTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred CCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 6778888777677888999998 777654
No 92
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.01 E-value=0.9 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCCCCCcCCCceEecCcceeecCccccccCe
Q 029070 107 GTREKCVGCKNTVYPTEKVSVNGTPYHKSCF 137 (199)
Q Consensus 107 ~~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf 137 (199)
.....|+.|...|.+...-..=+..||..|+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 3458999999998765432233556777776
No 93
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=78.93 E-value=1.9 Score=26.57 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.6
Q ss_pred ccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 35 ACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.=|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 44788899888764 34446799999999988774
No 94
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.99 E-value=1.1 Score=28.10 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=19.4
Q ss_pred CCCccccccCceeecceeEEeCCcccccccc
Q 029070 7 GTQQKCMACDKTVYLVDKLTADNRIYHKACF 37 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 37 (199)
.....|..|...|..+.....=+..||..|+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 3457899999999755433333444555555
No 95
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=74.90 E-value=1.8 Score=28.78 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=17.9
Q ss_pred eccCcccccCCcccccCCcccccccHHHHh
Q 029070 39 CHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 39 C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
|..|+.|+..-.-..-=+..+|.+|+....
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~ 33 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHE 33 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHH
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHH
Confidence 667777774322122235678889987654
No 96
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.26 E-value=3.2 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceeccCcc-cccCCc---ccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKG-TLKLGN---YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~-~L~~~~---f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|.. .+.+.. ....=|..||..|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH
Confidence 56788877 555432 2334588899999988764
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.01 E-value=4.2 Score=26.29 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=22.8
Q ss_pred CCccccccCceeecceeEEeCCcccccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 8 TQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
..++|..|+..|- +.+.|..| --|..|.- +.|..||+-..+
T Consensus 15 ~~qiCqiCGD~VG----~~~~Ge~F----VAC~eC~F-------------PvCrpCyEYErk 55 (93)
T 1weo_A 15 DGQFCEICGDQIG----LTVEGDLF----VACNECGF-------------PACRPCYEYERR 55 (93)
T ss_dssp SSCBCSSSCCBCC----BCSSSSBC----CSCSSSCC-------------CCCHHHHHHHHH
T ss_pred CCCccccccCccc----cCCCCCEE----EeeeccCC-------------hhhHHHHHHHHh
Confidence 3467777777663 23444433 23455543 458888875544
No 98
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=73.94 E-value=2.4 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=16.1
Q ss_pred CeeeeCCccccHhHHHhHhc
Q 029070 150 NYIAHEGRLYCKHHHNQLIK 169 (199)
Q Consensus 150 ~~~~~~g~~yC~~c~~~~~~ 169 (199)
.|...+-+|||..||+++-.
T Consensus 21 F~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHHT
T ss_pred eEEEecCccchHHHHHHHhh
Confidence 45677899999999997643
No 99
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=73.02 E-value=2.8 Score=27.40 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=23.3
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+......=|..||..|..+.+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 678888887764322244588899999887765
No 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=72.24 E-value=3.1 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=23.7
Q ss_pred cceeccCcccccCCccccc-CCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSF-EGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. .... =|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 15 ELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHH
T ss_pred CCCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHH
Confidence 36788887777643 3344 389999999987775
No 101
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=70.02 E-value=3.6 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=25.6
Q ss_pred ccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 35 ACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.=+.|..|...+.+......=|..||..|..+.+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 34688999888875322335689999999988775
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.29 E-value=3 Score=25.12 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.5
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQKP-VTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCCe-EEcCCCChhhHHHHHHHHH
Confidence 36788888877643 2335688899999887663
No 103
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=68.48 E-value=5 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=24.4
Q ss_pred cceeccCcccccCCccccc-CCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSF-EGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~-~g~~yC~~c~~~~~~ 69 (199)
=|.|..|...+.+. .... =|..||..|....+.
T Consensus 13 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMTDA-VVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECSSC-EECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhcCc-eECCCCCCHHHHHHHHHHHH
Confidence 47889998888643 3344 389999999987764
No 104
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=68.39 E-value=5.1 Score=23.69 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=17.5
Q ss_pred eeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 38 RCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 38 ~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.|..|...+.+......=|..||..|..+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHH
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHh
Confidence 45555555543223333466778888766543
No 105
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=68.03 E-value=3.5 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=24.0
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+......=|..||..|....+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 3678888887765323335688899999887664
No 106
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=67.24 E-value=6.1 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=21.0
Q ss_pred ceeccCcccccCC--cccc-cCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLG--NYNS-FEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~--~f~~-~~g~~yC~~c~~~~~~ 69 (199)
+.|..|-.++... .+.. .=|..+|..|+.+.+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~ 47 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT 47 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHh
Confidence 5677777776432 2221 2477889999987764
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=67.07 E-value=5.6 Score=26.82 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=35.5
Q ss_pred CccccccCceeecceeEEeCCcccccccceeccCcccccCC----c--ccccCCcccccccHHHHhh
Q 029070 9 QQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCKGTLKLG----N--YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~L~~~----~--f~~~~g~~yC~~c~~~~~~ 69 (199)
...|..|++.+...+.... ..-..=+.|..|...+... . ....=|..||..|..+.+.
T Consensus 48 ~~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 48 ANTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp CSBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred CCCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 4578899998864444322 1223446688887777542 0 2223478889999876554
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.22 E-value=3.3 Score=27.83 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=21.2
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
=+.|..|...+.+......=|..||..|....+
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh
Confidence 367788877775432222567888888876554
No 109
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=64.17 E-value=1.7 Score=32.75 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=26.0
Q ss_pred cceeccCcccccCCcccccCCcccccccHHH
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQ 66 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 66 (199)
=.+|..|+.......-...+|+.+|..|+..
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 4679999999987766678999999999864
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.91 E-value=13 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=25.9
Q ss_pred CccccccCceeecceeEEeC----CcccccccceeccCcccccCCcccccCCccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTAD----NRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPH 63 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c 63 (199)
...|..|+. .++.|.-. .+.||..|.. |.. .-.|..||..|
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 456888883 46665444 3678888864 322 23577888877
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=63.45 E-value=3.5 Score=26.14 Aligned_cols=49 Identities=31% Similarity=0.573 Sum_probs=35.3
Q ss_pred CCCCcCCCceEecCcceeecCccccccCeecccCCCCCCCCCeeeeCCccccHh
Q 029070 109 REKCVGCKNTVYPTEKVSVNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKH 162 (199)
Q Consensus 109 ~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~ 162 (199)
.-+|.-|.+.+.+...|..-...-|+-||.|++ ..|.. ...++.+||+.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr--~sIk~---q~~~~EvyCPS 63 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR--ESIKA---QGATGEVYCPS 63 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH--HHHHH---HHSSSCCCCTT
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccH--HHHHh---cCCCCcEECCC
Confidence 378999999998887777888888999999975 22211 12356777764
No 112
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=63.07 E-value=2.1 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=22.6
Q ss_pred eecccCCCCCCCCCeeeeCCccccHhHHHh
Q 029070 137 FKCSHGGCVISPSNYIAHEGRLYCKHHHNQ 166 (199)
Q Consensus 137 f~C~~C~~~l~~~~~~~~~g~~yC~~c~~~ 166 (199)
..|..|+.......-...+|+++|.+|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 357888776655455677899999999875
No 113
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.95 E-value=5.7 Score=24.51 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=22.4
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+ .....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHH
Confidence 677888777754 23345588899999877664
No 114
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=62.56 E-value=5.5 Score=26.72 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=23.5
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
|.|..|...+.+. ....=|..||..|..+.+.
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHh
Confidence 6788888877643 3345688899999887664
No 115
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.11 E-value=5.4 Score=24.21 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=15.5
Q ss_pred CccccccCceeecceeEEe--CCcccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTA--DNRIYHKACF 37 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF 37 (199)
...|..|...+..++.+.. =+-.||..|+
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 4567777776654443322 2445555554
No 116
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=61.79 E-value=5.4 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.376 Sum_probs=24.8
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=|.|..|...|.+. ....-|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHH
Confidence 37888898888643 4456788999999887765
No 117
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=61.63 E-value=3.4 Score=31.83 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCCCCCCcCCCceEecCcceeecCccccccCe----------ecccCCCCCCC
Q 029070 106 GGTREKCVGCKNTVYPTEKVSVNGTPYHKSCF----------KCSHGGCVISP 148 (199)
Q Consensus 106 ~~~~~~C~~C~~~I~~~~~v~~~~~~~H~~Cf----------~C~~C~~~l~~ 148 (199)
.+....|..|+..|..+..=.--+..||..|+ .|..|+..+..
T Consensus 177 ~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 34568999999998765321113567888887 57777666554
No 118
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=60.79 E-value=9.5 Score=23.19 Aligned_cols=29 Identities=21% Similarity=0.596 Sum_probs=15.7
Q ss_pred CccccccCceeecceeEEe--CCcccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTA--DNRIYHKACF 37 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF 37 (199)
...|..|...+.....+.. =+-.||..|+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci 45 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCI 45 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTT
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHH
Confidence 4578888777654443322 2444555554
No 119
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=60.34 E-value=5.5 Score=26.17 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=23.9
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+......=|..||..|....+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH
Confidence 4678888887764322225688999999887764
No 120
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.32 E-value=8.4 Score=23.63 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.3
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+. ....=|..||..|....+.
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHH
Confidence 6788888877643 3335588899999887664
No 121
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.65 E-value=6.4 Score=26.19 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=24.5
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|..+.+.
T Consensus 23 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILADP-VETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHh
Confidence 37788898887643 3345689999999987765
No 122
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=59.03 E-value=7.7 Score=21.68 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=16.3
Q ss_pred eeccCcccccCC--c-ccccCCcccccccHHHHhh
Q 029070 38 RCHHCKGTLKLG--N-YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 38 ~C~~C~~~L~~~--~-f~~~~g~~yC~~c~~~~~~ 69 (199)
.|..|...+.+. . ....=|..||..|..+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH
Confidence 455555554321 1 1222356677777766554
No 123
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=58.90 E-value=7.2 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=24.0
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|....+.
T Consensus 52 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 52 TFQCICCQELVFRP-ITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChHHcCc-EEeeCCCcccHHHHHHHHh
Confidence 37888998887643 3335588899999887764
No 124
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.97 E-value=8.5 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=23.4
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+.. ...=|..||..|....+.
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYE 51 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHH
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHH
Confidence 67888887776433 334688899999987765
No 125
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=57.47 E-value=3.8 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=16.4
Q ss_pred ccccccCceeecceeEEeCCcccccccceec
Q 029070 10 QKCMACDKTVYLVDKLTADNRIYHKACFRCH 40 (199)
Q Consensus 10 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~ 40 (199)
-.|.-|.+.+...-.|.-....-|.-||-|+
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeecccc
Confidence 3455555555433445555555555555554
No 126
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.25 E-value=9.9 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=22.9
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+. ....=|..||..|....+.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHH
Confidence 5778887777543 2334588899999988775
No 127
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=56.23 E-value=7.2 Score=26.96 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=21.8
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
+.|..|...+.+. ....=|..||..|....+
T Consensus 54 ~~C~iC~~~~~~~-~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFIEA-VTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCSSE-EEETTSCEEEHHHHHHHT
T ss_pred CCCcccCcccCCc-eECCCCCCccHHHHHHHH
Confidence 5788888777543 333458889999987654
No 128
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=56.10 E-value=4.3 Score=24.22 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=19.7
Q ss_pred ceeccCcccccCC----c--ccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLG----N--YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~----~--f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+. . ....=|..||..|..+.+.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 4566666555432 1 2233477889999877654
No 129
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=55.36 E-value=4.1 Score=23.65 Aligned_cols=41 Identities=15% Similarity=0.418 Sum_probs=24.1
Q ss_pred CccccccCceeecc----e--eEEeCCcccccccc--------eeccCcccccCC
Q 029070 9 QQKCMACDKTVYLV----D--KLTADNRIYHKACF--------RCHHCKGTLKLG 49 (199)
Q Consensus 9 ~~~C~~C~~~I~~~----~--~~~~~~~~~H~~CF--------~C~~C~~~L~~~ 49 (199)
...|..|...+... + ++..=|-.||..|+ +|-.|+.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 45677777766422 1 33444666777776 477777766543
No 130
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.19 E-value=5 Score=23.68 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=20.7
Q ss_pred ceeccCcccccCCc------ccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGN------YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~------f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+.. ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 56677766654321 2334478899999877664
No 131
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=54.92 E-value=8.9 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=24.5
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|....+.
T Consensus 78 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 78 SFMCVCCQELVYQP-VTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp HTBCTTTSSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred CCEeecCChhhcCC-EEcCCCCchhHHHHHHHHH
Confidence 37889998877643 3345688999999887775
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=53.35 E-value=11 Score=28.89 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=28.1
Q ss_pred ccccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 33 HKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 33 H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
-+.-|.|..|...+.+ ......|..||..|..+.+.
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 3567999999888864 34455899999999887765
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=52.40 E-value=4.8 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.431 Sum_probs=16.6
Q ss_pred CCCcCCCceEec-Cccee--ecCccccccCee
Q 029070 110 EKCVGCKNTVYP-TEKVS--VNGTPYHKSCFK 138 (199)
Q Consensus 110 ~~C~~C~~~I~~-~~~v~--~~~~~~H~~Cf~ 138 (199)
..|..|+..... .+.|. .=++.||..|..
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 567888765322 22233 235778888854
No 134
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=52.38 E-value=9.7 Score=23.96 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=27.0
Q ss_pred cccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 34 KACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.=|.|..|...+.+- .....|..||..|..+.+.
T Consensus 12 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP-VRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcCC-eECCCCCEECHHHHHHHHh
Confidence 4568999998888643 4445899999999887765
No 135
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=52.34 E-value=11 Score=24.45 Aligned_cols=35 Identities=9% Similarity=-0.210 Sum_probs=26.8
Q ss_pred cccceeccCcccccCCcccccCC-cccccccHHHHhh
Q 029070 34 KACFRCHHCKGTLKLGNYNSFEG-VLYCRPHFDQLFK 69 (199)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g-~~yC~~c~~~~~~ 69 (199)
+.=|.|..|...+.+- .....| ..||..|..+.+.
T Consensus 20 p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHH
Confidence 5669999998888643 444566 9999999887764
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.12 E-value=13 Score=23.02 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=22.9
Q ss_pred ceeccCcccccCCc---ccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGN---YNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~---f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+.. ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 66788877776532 2233478899999988765
No 137
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=51.75 E-value=11 Score=24.60 Aligned_cols=35 Identities=11% Similarity=-0.045 Sum_probs=27.6
Q ss_pred cccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 34 KACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.=|.|..|...+.+- .....|..||..|..+.+.
T Consensus 27 p~~~~CpI~~~~m~dP-V~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP-VRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp STTTBCTTTCSBCSSE-EEETTTEEEEHHHHHHHTT
T ss_pred cHhhCCcCccCcccCC-eECCCCCEEchHHHHHHHH
Confidence 6679999998888643 4445899999999887764
No 138
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.15 E-value=8 Score=23.17 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=18.9
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
+.|..|...+.+. ....=|..||..|..+.+
T Consensus 16 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 16 PECAICLQTCVHP-VSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp CBCSSSSSBCSSE-EEETTTEEEEHHHHHHCT
T ss_pred CCCccCCcccCCC-EEccCCCHHHHHHHHHHH
Confidence 5667776666433 222357778888876544
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.15 E-value=15 Score=21.98 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=18.3
Q ss_pred ceeccCcccccCCccc--ccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYN--SFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~--~~~g~~yC~~c~~~~~~ 69 (199)
..|..|...+...... ..=+..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH
Confidence 3455665555433211 12367788888876554
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.68 E-value=7.9 Score=23.50 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=11.4
Q ss_pred CCcccccccHHHHh
Q 029070 55 EGVLYCRPHFDQLF 68 (199)
Q Consensus 55 ~g~~yC~~c~~~~~ 68 (199)
+|.+||..||...-
T Consensus 26 dgDLYC~rC~rE~H 39 (67)
T 2d8v_A 26 DGDLYCARCFREGH 39 (67)
T ss_dssp TSEEECSSHHHHHT
T ss_pred CCceehHHHHHHHc
Confidence 55789999998765
No 141
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.06 E-value=20 Score=21.30 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=23.9
Q ss_pred CccccccCeecccCCCC-CCCCCeeee--CCccccHhHHHhH
Q 029070 129 GTPYHKSCFKCSHGGCV-ISPSNYIAH--EGRLYCKHHHNQL 167 (199)
Q Consensus 129 ~~~~H~~Cf~C~~C~~~-l~~~~~~~~--~g~~yC~~c~~~~ 167 (199)
...+|. ..|..|+.. |.+.+|.-. .+--+|..||..-
T Consensus 6 ~~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 345666 677888764 666555432 3556899999873
No 142
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=45.18 E-value=5.7 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=19.1
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
|.|..|...+.+. ....=|..||..|..+.+
T Consensus 16 ~~C~iC~~~~~~p-~~~~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 16 CQCGICMEILVEP-VTLPCNHTLCKPCFQSTV 46 (115)
T ss_dssp HBCTTTCSBCSSC-EECTTSCEECHHHHCCCC
T ss_pred CCCccCCcccCce-eEcCCCCHHhHHHHHHHH
Confidence 6677777666532 223447778888875443
No 143
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=44.72 E-value=12 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=20.0
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
+.|..|...+.+. ....=|..||..|..+.+
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSN 43 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCC
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHH
Confidence 6777777776542 223457788888875544
No 144
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=43.78 E-value=18 Score=20.02 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=7.5
Q ss_pred CcccccccHHHHh
Q 029070 56 GVLYCRPHFDQLF 68 (199)
Q Consensus 56 g~~yC~~c~~~~~ 68 (199)
|..||..|..+.+
T Consensus 28 ~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 28 GHGFHAECVDMWL 40 (55)
T ss_dssp CCEECTTHHHHTT
T ss_pred CCcccHHHHHHHH
Confidence 5556666765433
No 145
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.23 E-value=23 Score=22.03 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCccccccCceeecceeEEeC------Ccccccccc
Q 029070 8 TQQKCMACDKTVYLVDKLTAD------NRIYHKACF 37 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~------~~~~H~~CF 37 (199)
....|..|......++.+... ...||..|+
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 357899998776544444322 257788876
No 146
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.90 E-value=19 Score=22.94 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCCcCCCceEec--Cccee--ecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhH
Q 029070 110 EKCVGCKNTVYP--TEKVS--VNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQL 167 (199)
Q Consensus 110 ~~C~~C~~~I~~--~~~v~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 167 (199)
..|.+|+..-.. ..+|. .-+..||..|+.= +|.........|.-||..|....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~P-----pl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKP-----QVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSS-----CCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCC-----cccccccCCCCCCeeCccccchh
Confidence 689999876432 23333 2367899988552 23211111345777899998765
No 147
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=41.90 E-value=8 Score=25.76 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=12.2
Q ss_pred CccccccCceeecce
Q 029070 9 QQKCMACDKTVYLVD 23 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~ 23 (199)
-..|..|++.|.-++
T Consensus 25 Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 25 RASCKKCSESIPKDS 39 (106)
T ss_dssp CCBCSSSCCBCCTTC
T ss_pred CCcchhhCCccCCCC
Confidence 468999999997665
No 148
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=41.37 E-value=6.4 Score=26.82 Aligned_cols=15 Identities=13% Similarity=0.474 Sum_probs=12.0
Q ss_pred CccccccCceeecce
Q 029070 9 QQKCMACDKTVYLVD 23 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~ 23 (199)
-..|..|++.|.-++
T Consensus 38 RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 38 RASCKKCSESIPKDS 52 (116)
T ss_dssp CCBCTTTCCBCCTTS
T ss_pred CccCcccCCccCCCC
Confidence 468999999997655
No 149
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=41.24 E-value=12 Score=23.68 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=14.0
Q ss_pred CccccccCceeecceeEEe--CCcccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTA--DNRIYHKACF 37 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~--~~~~~H~~CF 37 (199)
...|..|...+..++.+.. =+-.||..|+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 3457777666644443322 2344454443
No 150
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=40.57 E-value=6.7 Score=26.47 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.2
Q ss_pred CccccccCceeecce
Q 029070 9 QQKCMACDKTVYLVD 23 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~ 23 (199)
-..|..|++.|.-++
T Consensus 19 Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQ 33 (111)
T ss_dssp CCBCTTTCCBCCTTC
T ss_pred CccccccCCCccCCc
Confidence 578999999997655
No 151
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.28 E-value=24 Score=20.20 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=24.1
Q ss_pred cceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
=+.|..|...+.+. ....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQKP-VTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSSC-EECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCCe-EEeCCCCcchHHHHHHHHH
Confidence 36788888877643 3335688899999887765
No 152
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=39.94 E-value=22 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=28.4
Q ss_pred cccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 34 KACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 34 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.=|.|..|...+.+ ......|..||..|....+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 677999999988874 45557899999999887775
No 153
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=39.92 E-value=27 Score=20.41 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=9.2
Q ss_pred CcccccccHHHHhh
Q 029070 56 GVLYCRPHFDQLFK 69 (199)
Q Consensus 56 g~~yC~~c~~~~~~ 69 (199)
|..||..|..+.+.
T Consensus 36 ~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 36 MHLFHQVCVDQWLI 49 (69)
T ss_dssp SCEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 56677777766543
No 154
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=39.50 E-value=9.8 Score=25.76 Aligned_cols=16 Identities=13% Similarity=0.443 Sum_probs=12.7
Q ss_pred CccccccCceeeccee
Q 029070 9 QQKCMACDKTVYLVDK 24 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~ 24 (199)
-..|..|++.|.-++.
T Consensus 20 RA~Ck~Ck~kI~KgeL 35 (114)
T 1v9x_A 20 RSSCKTCKSVINKENF 35 (114)
T ss_dssp CCBCSSSCCBCCSSSE
T ss_pred CCCchhhCCccCCCCE
Confidence 4689999999976663
No 155
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=38.67 E-value=20 Score=21.89 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred ccccCCCCccccccCcee--ecceeEEe--CCcccccccceeccCcccccCCcccccCCcccccccHHHHh
Q 029070 2 AAAFAGTQQKCMACDKTV--YLVDKLTA--DNRIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLF 68 (199)
Q Consensus 2 ~~~~~~~~~~C~~C~~~I--~~~~~~~~--~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 68 (199)
|.+.......|..|++.= ..++.|.- =+..||..|..=. + .-+|..||..|.....
T Consensus 9 ~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----~------vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y------IPEGQWLCRHCLQSRA 68 (71)
T ss_dssp -CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----S------CCSSCCCCHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----c------CCCCCcCCccCcCcCc
Confidence 344555678899998753 22344433 2467888885422 1 3457899999976654
No 156
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.64 E-value=21 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=18.1
Q ss_pred ceeccCcccccCCcccccCCcc-cccccHHH
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVL-YCRPHFDQ 66 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~-yC~~c~~~ 66 (199)
+.|..|...+.+..+ ..=|.. +|..|..+
T Consensus 26 ~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~ 55 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEA 55 (75)
T ss_dssp HSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH
T ss_pred CCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC
Confidence 467777766654333 234666 89999743
No 157
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=38.35 E-value=5.1 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=26.0
Q ss_pred ccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 35 ACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.=|.|..|...|.+. ....=|..||..|..+.+.
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 447899998888643 4456689999999988664
No 158
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.11 E-value=11 Score=23.37 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=25.0
Q ss_pred CCccccccCceeec-----------ce-e--EEeCCcccccccc--------eeccCccccc
Q 029070 8 TQQKCMACDKTVYL-----------VD-K--LTADNRIYHKACF--------RCHHCKGTLK 47 (199)
Q Consensus 8 ~~~~C~~C~~~I~~-----------~~-~--~~~~~~~~H~~CF--------~C~~C~~~L~ 47 (199)
....|+.|...+.. ++ . +..=+-.||..|+ +|-.|+.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 35678888888732 12 2 2224667888776 3777777664
No 159
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.68 E-value=10 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=14.3
Q ss_pred ceeccCcccccCCcccccCCcccccccH
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHF 64 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (199)
+.|..|...+.+. ....=|..||..|.
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci 33 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCL 33 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHH
Confidence 4566666655432 22234556666664
No 160
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=36.95 E-value=13 Score=25.28 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=12.8
Q ss_pred CccccccCceeeccee
Q 029070 9 QQKCMACDKTVYLVDK 24 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~ 24 (199)
-..|..|++.|.-++.
T Consensus 15 RA~Ck~C~~kI~KgeL 30 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGVC 30 (117)
T ss_dssp CEECTTSSCEECTTCE
T ss_pred CccchhhCcccCCCCe
Confidence 4689999999976663
No 161
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=34.79 E-value=22 Score=21.70 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=29.5
Q ss_pred CCCcCCCceEecCcceeec--CccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhc
Q 029070 110 EKCVGCKNTVYPTEKVSVN--GTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIK 169 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 169 (199)
..|..|+++-.+..+|.-. +.-||..|.. .++.. ...+.-||..|..++-.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-----~~~~~----~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-----IMAAP----PEEMQWFCPKCANKIKK 71 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-----CSSCC----CSSSCCCCTTTHHHHCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-----CCccC----CCCCCEEChhccCchhh
Confidence 5799998875433344422 3556777643 11111 12367789999877643
No 162
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=34.29 E-value=12 Score=20.50 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.2
Q ss_pred ccccccCceeecc
Q 029070 10 QKCMACDKTVYLV 22 (199)
Q Consensus 10 ~~C~~C~~~I~~~ 22 (199)
.+|..|+++|...
T Consensus 18 RvC~~CgkPi~ls 30 (44)
T 2lo3_A 18 RVCEKCGKPLALT 30 (44)
T ss_dssp EECTTTCCEEETT
T ss_pred hhhcccCCcchHH
Confidence 5799999999643
No 163
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=34.00 E-value=25 Score=27.49 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=25.7
Q ss_pred ccceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 35 ACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
.=|+|..|...+.+.--...=|..||..|..+.+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence 34888999888864332235689999999988775
No 164
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.95 E-value=44 Score=18.48 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.9
Q ss_pred ceeccCcccccCCcccccCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 69 (199)
+.|..|...+.+. ....=|..||..|..+.+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHHHH
Confidence 5677887777543 3344578899999877653
No 165
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.76 E-value=14 Score=21.80 Aligned_cols=27 Identities=11% Similarity=0.328 Sum_probs=14.6
Q ss_pred CccccccCceeecceeEEeCCcccccccc
Q 029070 9 QQKCMACDKTVYLVDKLTADNRIYHKACF 37 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF 37 (199)
...|..|...+.. ++..=+-.||..|+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci 41 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCI 41 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHH
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHH
Confidence 4568888777642 33333444555553
No 166
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=31.96 E-value=18 Score=21.72 Aligned_cols=31 Identities=16% Similarity=0.467 Sum_probs=18.4
Q ss_pred CCCCccccccCceeecce-eEEeC---Cccccccc
Q 029070 6 AGTQQKCMACDKTVYLVD-KLTAD---NRIYHKAC 36 (199)
Q Consensus 6 ~~~~~~C~~C~~~I~~~~-~~~~~---~~~~H~~C 36 (199)
......|..|++++..++ .|.-. ..=||..|
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhc
Confidence 344678999999986554 45554 34467766
No 167
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.41 E-value=23 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.8
Q ss_pred cceeccCcccccCCcccc-cCCcccccccHHHHhh
Q 029070 36 CFRCHHCKGTLKLGNYNS-FEGVLYCRPHFDQLFK 69 (199)
Q Consensus 36 CF~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~ 69 (199)
=|.|..|...+.+ .... ..|..||..|..+.+.
T Consensus 7 ~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 7 GFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred EeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 4889999888864 3444 5899999999887775
No 168
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.57 E-value=1.1e+02 Score=19.41 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=31.3
Q ss_pred CCCcCCCceEecCcceee--cCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHhc
Q 029070 110 EKCVGCKNTVYPTEKVSV--NGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLIK 169 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 169 (199)
..|..|++.-....+|.- =...||..|.. -+|.. +-.+.-||..|.....+
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-----Ppl~~----~P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-----PPLPE----IPRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSS-----SCCSS----CCSSCCCCHHHHHHHHS
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCC-----CCccc----CCCCCcCCccCcCcccc
Confidence 579999876433333442 35678988864 22321 22467789999876543
No 169
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.08 E-value=25 Score=15.33 Aligned_cols=12 Identities=17% Similarity=0.742 Sum_probs=8.7
Q ss_pred ceeccCcccccC
Q 029070 37 FRCHHCKGTLKL 48 (199)
Q Consensus 37 F~C~~C~~~L~~ 48 (199)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 578888877754
No 170
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=26.36 E-value=39 Score=19.68 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=25.2
Q ss_pred ceeccCcccccCCcccc-cCCcccccccHHHHhh
Q 029070 37 FRCHHCKGTLKLGNYNS-FEGVLYCRPHFDQLFK 69 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~-~~g~~yC~~c~~~~~~ 69 (199)
|.|..+...+.+. ... ..|..|+..+..+.+.
T Consensus 4 ~~CpIs~~~m~dP-V~~~~sG~~yer~~I~~~l~ 36 (61)
T 2bay_A 4 MLCAISGKVPRRP-VLSPKSRTIFEKSLLEQYVK 36 (61)
T ss_dssp CCCTTTCSCCSSE-EEETTTTEEEEHHHHHHHHH
T ss_pred EEecCCCCCCCCC-EEeCCCCcEEcHHHHHHHHH
Confidence 7888888888744 444 7899999999887765
No 171
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.18 E-value=20 Score=24.94 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.2
Q ss_pred CccccccCceeecce
Q 029070 9 QQKCMACDKTVYLVD 23 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~ 23 (199)
-..|..|++.|.-++
T Consensus 27 RA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 27 RSTCKGCMEKIEKGQ 41 (134)
T ss_dssp CCBCSSSCCBCCTTS
T ss_pred CccchhcCCcccCCC
Confidence 468999999997666
No 172
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=25.28 E-value=23 Score=17.26 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.2
Q ss_pred ccceeccCccccc
Q 029070 35 ACFRCHHCKGTLK 47 (199)
Q Consensus 35 ~CF~C~~C~~~L~ 47 (199)
.|+.|+.|...|-
T Consensus 6 sclvcaacsvell 18 (31)
T 2lbz_A 6 SCLVCAACSVELL 18 (31)
T ss_dssp GGGGGGGCCSCSG
T ss_pred HHHHHHHhHHHHH
Confidence 6888888887764
No 173
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=25.01 E-value=17 Score=26.89 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=20.6
Q ss_pred ccceeccCcccccCCcccccCCcccccccHHH
Q 029070 35 ACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQ 66 (199)
Q Consensus 35 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 66 (199)
.=.+|..|+...... |+.+|..|+.+
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHTT
T ss_pred CCEECCcCCCChhhC------CCcCCccccCC
Confidence 556799998877654 89999999853
No 174
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=24.90 E-value=44 Score=19.46 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=28.6
Q ss_pred CCccccccCceeecceeEEeCC-----cccccccceeccCcccccCCcccccCCcccccccHH
Q 029070 8 TQQKCMACDKTVYLVDKLTADN-----RIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFD 65 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 65 (199)
....| .|+++- .++.|.-.+ .-||..|.. |... ..|..||..|..
T Consensus 9 e~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg-------l~~~----p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC-------CCcC----CCCCEECcCccC
Confidence 34567 798875 467666555 458998865 3221 247788988853
No 175
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.80 E-value=35 Score=19.86 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=28.4
Q ss_pred CCCccccccCceeecceeEEeCC-----cccccccceeccCcccccCCcccccCCcccccccH
Q 029070 7 GTQQKCMACDKTVYLVDKLTADN-----RIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHF 64 (199)
Q Consensus 7 ~~~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (199)
.....| .|+++- .++.|.-.+ .-||..|.. |... ..+..||..|.
T Consensus 7 ~e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg-------l~~~----p~~~w~Cp~C~ 56 (59)
T 3c6w_A 7 NEPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD-------LTTK----PKGKWFCPRCV 56 (59)
T ss_dssp -CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHH
T ss_pred CCCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC-------cccC----CCCCEECcCcc
Confidence 345567 798875 477776665 457988865 3221 23678898884
No 176
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.78 E-value=28 Score=15.38 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.0
Q ss_pred ceeccCcccccC
Q 029070 37 FRCHHCKGTLKL 48 (199)
Q Consensus 37 F~C~~C~~~L~~ 48 (199)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888887754
No 177
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.66 E-value=1.1e+02 Score=17.56 Aligned_cols=47 Identities=17% Similarity=0.480 Sum_probs=29.0
Q ss_pred CCCcCCCceEecCccee--ecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHhHh
Q 029070 110 EKCVGCKNTVYPTEKVS--VNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQLI 168 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 168 (199)
..|..|++. ++.|. .=...||..|..= +|.. .-.|.-+|..|-.+..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQDQML 54 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSSS-----CCSS----CCCSCCCCHHHHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCCC-----CcCC----CCCCceEChhccChhh
Confidence 678888864 44444 2357788887552 2322 2246778999976654
No 178
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.46 E-value=42 Score=20.90 Aligned_cols=10 Identities=20% Similarity=0.943 Sum_probs=5.8
Q ss_pred CCCcCCCceE
Q 029070 110 EKCVGCKNTV 119 (199)
Q Consensus 110 ~~C~~C~~~I 119 (199)
..|+.|.+++
T Consensus 26 r~CarC~~~L 35 (76)
T 2csz_A 26 RTCARCQESL 35 (76)
T ss_dssp CBCSSSCCBC
T ss_pred cchhhhCccc
Confidence 5566666554
No 179
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.17 E-value=57 Score=19.15 Aligned_cols=44 Identities=23% Similarity=0.513 Sum_probs=28.6
Q ss_pred CCccccccCceeecceeEEeCC-----cccccccceeccCcccccCCcccccCCcccccccH
Q 029070 8 TQQKCMACDKTVYLVDKLTADN-----RIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHF 64 (199)
Q Consensus 8 ~~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (199)
....| .|+++- .++.|.-.+ .-||..|.. |... ..+..||..|.
T Consensus 10 e~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~ 58 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCR 58 (62)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHH
T ss_pred CCcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCcc
Confidence 34567 798874 467666555 557988865 3221 24788998885
No 180
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.12 E-value=11 Score=21.63 Aligned_cols=35 Identities=23% Similarity=0.584 Sum_probs=20.6
Q ss_pred ccccccCceeecceeEEeCCccccc--ccceeccCcccccC
Q 029070 10 QKCMACDKTVYLVDKLTADNRIYHK--ACFRCHHCKGTLKL 48 (199)
Q Consensus 10 ~~C~~C~~~I~~~~~~~~~~~~~H~--~CF~C~~C~~~L~~ 48 (199)
-.|..|++.+.....+. ..|. .=|.|..|++.+..
T Consensus 15 ~~C~~C~k~F~~~~~l~----~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCBCEE
T ss_pred ccCCCCCchhccHHHhH----hhcCCCCCEECCCCCCcccc
Confidence 36888888764322221 2343 34788888777653
No 181
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.02 E-value=24 Score=15.56 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=8.7
Q ss_pred ceeccCcccccC
Q 029070 37 FRCHHCKGTLKL 48 (199)
Q Consensus 37 F~C~~C~~~L~~ 48 (199)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 678888877653
No 182
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=23.88 E-value=17 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=0.0
Q ss_pred CccccccCceeecce
Q 029070 9 QQKCMACDKTVYLVD 23 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~ 23 (199)
-..|..|++.|.-++
T Consensus 143 Ra~Ck~C~~kI~Kge 157 (223)
T 4av1_A 143 RSTCKGCMEKIEKGQ 157 (223)
T ss_dssp ---------------
T ss_pred CccccccCCccCCCC
Confidence 467999999997555
No 183
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.88 E-value=35 Score=15.22 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=9.6
Q ss_pred ceeccCcccccCC
Q 029070 37 FRCHHCKGTLKLG 49 (199)
Q Consensus 37 F~C~~C~~~L~~~ 49 (199)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 6788888877644
No 184
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.21 E-value=36 Score=14.86 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=8.9
Q ss_pred ceeccCcccccCC
Q 029070 37 FRCHHCKGTLKLG 49 (199)
Q Consensus 37 F~C~~C~~~L~~~ 49 (199)
|.|..|++.+...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5678887776543
No 185
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=22.21 E-value=65 Score=17.54 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=16.0
Q ss_pred cccCCCCCCCCCeeeeCCccccHhHHH
Q 029070 139 CSHGGCVISPSNYIAHEGRLYCKHHHN 165 (199)
Q Consensus 139 C~~C~~~l~~~~~~~~~g~~yC~~c~~ 165 (199)
|..|+..-....-...+|..+|..|..
T Consensus 4 C~~C~tt~Tp~WR~gp~G~~LCNaCGl 30 (43)
T 2vut_I 4 CTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp CSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred CCccCCCCCCccccCCCCCcccHHHHH
Confidence 555555544333333457788999964
No 186
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.92 E-value=36 Score=20.78 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=14.7
Q ss_pred ceeccCcccccCCcccccCCcccccccH
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVLYCRPHF 64 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (199)
+.|..|+..+... ..+.+.|+.|-
T Consensus 29 Y~C~~CG~~~e~~----~~d~irCp~CG 52 (70)
T 1twf_L 29 YICAECSSKLSLS----RTDAVRCKDCG 52 (70)
T ss_dssp EECSSSCCEECCC----TTSTTCCSSSC
T ss_pred EECCCCCCcceeC----CCCCccCCCCC
Confidence 5677787775422 33456777774
No 187
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=21.76 E-value=44 Score=19.38 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=17.1
Q ss_pred eeccCcccccCCccc-ccCCcc-cccccHHHHhh
Q 029070 38 RCHHCKGTLKLGNYN-SFEGVL-YCRPHFDQLFK 69 (199)
Q Consensus 38 ~C~~C~~~L~~~~f~-~~~g~~-yC~~c~~~~~~ 69 (199)
.|..|.....+..+. ..=|.. +|..|..++..
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~ 42 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK 42 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH
Confidence 355555544333222 122454 78899877664
No 188
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.87 E-value=20 Score=15.68 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=8.3
Q ss_pred ceeccCcccccC
Q 029070 37 FRCHHCKGTLKL 48 (199)
Q Consensus 37 F~C~~C~~~L~~ 48 (199)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 567778776654
No 189
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.21 E-value=51 Score=19.53 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=15.9
Q ss_pred ceeccCcccccCCcccccCCcc-cccccHHH
Q 029070 37 FRCHHCKGTLKLGNYNSFEGVL-YCRPHFDQ 66 (199)
Q Consensus 37 F~C~~C~~~L~~~~f~~~~g~~-yC~~c~~~ 66 (199)
..|..|.....+..+. .=|.. +|..|...
T Consensus 16 ~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~ 45 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVLL-PCRHTCLCDGCVKY 45 (68)
T ss_dssp SCCSSSSSSCCCCEET-TTTBCCSCTTHHHH
T ss_pred CCCCCcCcCCCCEEEE-CCCChhhhHHHHhc
Confidence 4566665555433332 23445 88888763
No 190
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.04 E-value=38 Score=14.92 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=9.5
Q ss_pred ceeccCcccccCC
Q 029070 37 FRCHHCKGTLKLG 49 (199)
Q Consensus 37 F~C~~C~~~L~~~ 49 (199)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 6788888877643
No 191
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.81 E-value=94 Score=18.74 Aligned_cols=43 Identities=23% Similarity=0.479 Sum_probs=28.0
Q ss_pred CccccccCceeecceeEEeCC-----cccccccceeccCcccccCCcccccCCcccccccH
Q 029070 9 QQKCMACDKTVYLVDKLTADN-----RIYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHF 64 (199)
Q Consensus 9 ~~~C~~C~~~I~~~~~~~~~~-----~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~ 64 (199)
...| .|+++- .++.|.-.+ .-||..|.. |... ..+..||..|.
T Consensus 16 ~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~ 63 (71)
T 1wen_A 16 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCS 63 (71)
T ss_dssp CCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTS
T ss_pred CCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCC
Confidence 4568 698875 367666555 457988865 3221 24678999884
No 192
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.77 E-value=75 Score=20.65 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=21.5
Q ss_pred ccccCeecccCCC-CCCCCCeeee--CCccccHhHHHhHh
Q 029070 132 YHKSCFKCSHGGC-VISPSNYIAH--EGRLYCKHHHNQLI 168 (199)
Q Consensus 132 ~H~~Cf~C~~C~~-~l~~~~~~~~--~g~~yC~~c~~~~~ 168 (199)
+|+. ..|..|+. +|.+.+|.-. .+--+|..||....
T Consensus 28 ~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~ 66 (98)
T 2dip_A 28 KHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC 66 (98)
T ss_dssp SCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS
T ss_pred ccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC
Confidence 4544 56666765 4555454332 24557999987754
No 193
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=20.28 E-value=78 Score=18.35 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCCcCCCceEecCccee--ecCccccccCeecccCCCCCCCCCeeeeCCccccHhHHHh
Q 029070 110 EKCVGCKNTVYPTEKVS--VNGTPYHKSCFKCSHGGCVISPSNYIAHEGRLYCKHHHNQ 166 (199)
Q Consensus 110 ~~C~~C~~~I~~~~~v~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~ 166 (199)
..|..|+.. ++.|. .=...||..|..= +|.. .-.|.-+|..|..+
T Consensus 10 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDG---GELLCCDTCPSSYHIHCLNP-----PLPE----IPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCC---SSCBCCSSSCCCBCSSSSSS-----CCSS----CCSSCCCCTTTTTT
T ss_pred CcCCCCCCC---CCEEEcCCCCHHHcccccCC-----CcCc----CCCCccCChhhcCc
Confidence 678888752 34333 2356788888542 2221 22456678888654
No 194
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.18 E-value=34 Score=15.11 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=9.3
Q ss_pred ceeccCcccccCC
Q 029070 37 FRCHHCKGTLKLG 49 (199)
Q Consensus 37 F~C~~C~~~L~~~ 49 (199)
|.|..|++.+...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 6788888777543
Done!