Query 029071
Match_columns 199
No_of_seqs 186 out of 955
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 3.7E-34 8E-39 254.5 8.5 145 16-193 7-194 (286)
2 PLN00025 photosystem II light 100.0 1.9E-31 4.1E-36 234.8 9.0 101 73-177 44-145 (262)
3 PLN00171 photosystem light-ha 100.0 1.8E-30 4E-35 234.0 7.7 105 70-177 98-203 (324)
4 PLN00098 light-harvesting comp 100.0 3.3E-29 7.2E-34 221.1 10.0 109 72-193 54-164 (267)
5 PLN00101 Photosystem I light-h 99.9 1.5E-27 3.2E-32 209.1 11.0 108 74-194 47-156 (250)
6 PLN00097 photosystem I light h 99.9 9.2E-28 2E-32 209.7 8.6 108 77-194 41-148 (244)
7 PLN00048 photosystem I light h 99.9 1.3E-27 2.8E-32 210.5 7.7 114 74-193 36-158 (262)
8 PLN00100 light-harvesting comp 99.9 1E-25 2.3E-30 197.1 10.1 99 78-193 33-131 (246)
9 PLN00147 light-harvesting comp 99.9 1.1E-25 2.3E-30 197.5 9.3 109 74-193 39-148 (252)
10 PLN00170 photosystem II light- 99.9 1.9E-25 4E-30 196.3 7.8 107 78-193 49-156 (255)
11 PLN00099 light-harvesting comp 99.9 6.7E-25 1.5E-29 191.6 6.9 103 78-193 42-154 (243)
12 PF00504 Chloroa_b-bind: Chlor 99.8 2.7E-19 6E-24 143.8 8.4 70 94-164 1-72 (156)
13 PLN00089 fucoxanthin-chlorophy 99.6 1.2E-15 2.5E-20 131.0 8.1 58 94-152 46-104 (209)
14 PLN00147 light-harvesting comp 99.6 1.4E-15 3E-20 133.9 5.6 58 96-153 173-230 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 2.3E-15 4.9E-20 129.2 5.0 54 100-153 153-207 (209)
16 PLN00048 photosystem I light h 99.5 4.6E-15 1E-19 131.2 4.1 54 100-153 187-240 (262)
17 PLN00025 photosystem II light 99.5 2.5E-14 5.4E-19 126.6 4.6 54 99-153 183-236 (262)
18 PLN00187 photosystem II light- 99.5 4.1E-14 8.9E-19 126.6 4.6 54 100-153 212-265 (286)
19 PLN00099 light-harvesting comp 99.4 8.2E-14 1.8E-18 122.2 4.6 53 100-153 164-217 (243)
20 PLN00098 light-harvesting comp 99.4 1.4E-13 2.9E-18 122.3 4.9 53 101-153 192-245 (267)
21 PF00504 Chloroa_b-bind: Chlor 99.4 1.8E-13 3.8E-18 110.1 4.3 50 97-146 107-156 (156)
22 PLN00171 photosystem light-ha 99.4 2.8E-13 6.1E-18 122.9 4.5 52 102-153 252-303 (324)
23 PLN00097 photosystem I light h 99.4 6.2E-13 1.3E-17 116.8 4.8 46 108-153 182-227 (244)
24 PLN00100 light-harvesting comp 99.3 2.4E-12 5.1E-17 113.3 3.7 48 101-153 143-190 (246)
25 PLN00120 fucoxanthin-chlorophy 99.3 3.5E-12 7.6E-17 109.1 4.4 70 81-150 122-195 (202)
26 PLN00120 fucoxanthin-chlorophy 99.2 1.4E-11 3.1E-16 105.3 6.7 39 108-146 47-87 (202)
27 PLN00101 Photosystem I light-h 99.2 9.9E-12 2.1E-16 109.6 3.7 47 102-153 184-230 (250)
28 PLN00170 photosystem II light- 99.2 1.4E-11 2.9E-16 109.0 4.4 51 102-153 191-250 (255)
29 PHA02337 putative high light i 98.0 3.9E-06 8.5E-11 54.4 2.1 30 124-153 3-32 (35)
30 PLN00014 light-harvesting-like 97.0 0.00025 5.5E-09 62.8 1.0 30 123-152 159-188 (250)
31 PLN00084 photosystem II subuni 96.1 0.0026 5.7E-08 54.7 1.6 35 119-153 131-166 (214)
32 KOG1576 Predicted oxidoreducta 21.6 31 0.00067 32.3 0.0 42 72-115 73-119 (342)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=3.7e-34 Score=254.52 Aligned_cols=145 Identities=28% Similarity=0.501 Sum_probs=107.2
Q ss_pred cccccCCccccccccccCCCCCCCCCCCcceeeeccCCCCCCCCCCCCCCCCchhhhhhhcCCCCccccccCccCCCCCC
Q 029071 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95 (199)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~k~a~~~~~k~~~~~~~~~~~~~wyg~~R~~~lp~G~le~~~~P 95 (199)
+|.|.|.++. .+.++..+++++|+.+++..++ ++++ +. ..||+++|++|+|+ .++|
T Consensus 7 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~-----~~~~~~~r~~w~p~-----~~~P 62 (286)
T PLN00187 7 ASSFMGTRVP-----------DVASNSGRIVARFGFGKKKKAA-KKAK--KK-----SSKVGADRPLWFPG-----AKAP 62 (286)
T ss_pred chhhhhhhhc-----------ccccCccchhhhhccCcccccC-Cccc--cC-----ccCCCCCccccCCC-----CCCc
Confidence 3668887775 2344677899999753322111 1111 11 26889999999996 7899
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhh-------------------------------------------HHHHHHHHHhhch
Q 029071 96 EYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHAR 132 (199)
Q Consensus 96 ~yL~G~~PGD~GfDPlGL~kdpe~-------------------------------------------~~~~reaEL~hGR 132 (199)
+||||++||||||||+||+++||. ++|||++||+|||
T Consensus 63 ~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGR 142 (286)
T PLN00187 63 EWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGR 142 (286)
T ss_pred ccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhH
Confidence 999999999999999999999986 5999999999999
Q ss_pred hhHhhhhhhhhhhhhcCCCCCCCCCccccccchhhcccchhhHHHHHHHHHHHHHHHHhhh
Q 029071 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 133 ~AMLg~~G~lv~e~l~~~G~~~~p~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
|||||++||+++|++++ ..|+++|.+....+..|+++ ..|+.+..+.|+|++
T Consensus 143 wAMLAvaG~lvpEll~G--------~~W~~aG~~~~~~g~~y~g~-~~p~~~~~l~~iqvl 194 (286)
T PLN00187 143 WAMLATLGALSVEALTG--------VTWQDAGKVELVDGSSYLGQ-PLPFSITTLIWIEVL 194 (286)
T ss_pred HHHHHhhchhhHHhccC--------Cccccccccccccccccccc-ccchhHHHHHHHHHH
Confidence 99999999999999863 35999998754344568773 344444444555533
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=234.84 Aligned_cols=101 Identities=52% Similarity=0.992 Sum_probs=90.9
Q ss_pred hhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCC
Q 029071 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 73 ~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (199)
+.|||+||++|| |++. .++|+||||++||||||||+||++|+++++|||++||+||||||||++|++++|++++.|+
T Consensus 44 ~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 44 SIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred ccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 479999999999 4555 6899999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCCccccccchh-hcccchhhHHH
Q 029071 153 NCGPEAVWFKVNLH-FSRSLLLYVVY 177 (199)
Q Consensus 153 ~~~p~~~W~~aG~~-~~~~~l~y~g~ 177 (199)
... +++||++|.+ +.+++++|+++
T Consensus 121 ~~~-~~~W~~ag~~~~~~gg~~y~~~ 145 (262)
T PLN00025 121 KFG-EAVWFKAGAQIFSEGGLDYLGN 145 (262)
T ss_pred CcC-cccccccccccccccccccccC
Confidence 654 6789999986 55778899885
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.96 E-value=1.8e-30 Score=233.96 Aligned_cols=105 Identities=43% Similarity=0.813 Sum_probs=89.2
Q ss_pred hhhhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcC
Q 029071 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (199)
Q Consensus 70 ~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~ 149 (199)
.+...|||++|++|||. +. .++|+||||++||||||||+||++|+++++|||++||+||||||||++|++++|++++
T Consensus 98 ~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~ 174 (324)
T PLN00171 98 RNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDL 174 (324)
T ss_pred cccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhcc
Confidence 44568999999999963 33 3799999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccccccchhhccc-chhhHHH
Q 029071 150 FGANCGPEAVWFKVNLHFSRS-LLLYVVY 177 (199)
Q Consensus 150 ~G~~~~p~~~W~~aG~~~~~~-~l~y~g~ 177 (199)
.|....++++||++|.....+ .++|++.
T Consensus 175 ~g~~~~~~p~W~~aG~~~~~g~~~~y~~~ 203 (324)
T PLN00171 175 FGAVHFAEPVWWRVGYAKLQGDTLDYLGI 203 (324)
T ss_pred CCccccCccchhhcccccccccchhhccC
Confidence 776544467899999764433 5666653
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.96 E-value=3.3e-29 Score=221.12 Aligned_cols=109 Identities=35% Similarity=0.702 Sum_probs=93.5
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCC
Q 029071 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G 151 (199)
...+|+++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 346799999999996 789999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCccccccchhhcccchhhHHH--HHHHHHHHHHHHHhhh
Q 029071 152 ANCGPEAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELY 193 (199)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~ 193 (199)
+.. +..||++|... |++. ....++++++.|+|.+
T Consensus 129 ~~~--~~~w~~Ag~~~------~~~~~~~l~~~q~~lmG~~E~~ 164 (267)
T PLN00098 129 FIE--NFSWYDAGARE------YFADPTTLFVVQMVLMGWAEGR 164 (267)
T ss_pred ccc--ccccccccchh------hccCchHHHHHHHHHHHHHHHH
Confidence 754 35799998752 2221 3445688889999974
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=209.05 Aligned_cols=108 Identities=33% Similarity=0.681 Sum_probs=92.8
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
.++..+|++|+|+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|++++|++++.|+.
T Consensus 47 ~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 47 FKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred ccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5566899999996 78999999999999999999999999999999999999999999999999999999998886
Q ss_pred CCCCccccccchhhcccchhhHHH--HHHHHHHHHHHHHhhhh
Q 029071 154 CGPEAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELYF 194 (199)
Q Consensus 154 ~~p~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~~ 194 (199)
.. +.|+++|.. .|++. ..+.++++++.|+|.+=
T Consensus 122 ~~--p~w~~ag~~------~~~~~~~~l~~ie~~~mg~~E~~R 156 (250)
T PLN00101 122 NA--PQWYDAGKA------EYFASSSTLFVIEFILFHYVEIRR 156 (250)
T ss_pred CC--Cccccccch------hhcccchHHHHHHHHHHHHHHHHH
Confidence 54 569999875 23332 35555778889999754
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.94 E-value=9.2e-28 Score=209.75 Aligned_cols=108 Identities=32% Similarity=0.556 Sum_probs=90.9
Q ss_pred CCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCC
Q 029071 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (199)
Q Consensus 77 g~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p 156 (199)
+++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|++++|++++.|...
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 4699999996 789999999999999999999999999999999999999999999999999999999888753
Q ss_pred CccccccchhhcccchhhHHHHHHHHHHHHHHHHhhhh
Q 029071 157 EAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYF 194 (199)
Q Consensus 157 ~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~ 194 (199)
.+.||++|... +.+.-.+ .++.++++++.|+|+.-
T Consensus 114 ~p~W~~Ag~~~--~~~~~~~-~l~~i~~~lmg~~E~~r 148 (244)
T PLN00097 114 LPNWIDAAKWD--GYWAGAG-PLFFIQMAMFNWAEIRR 148 (244)
T ss_pred CCccccCCcch--hccccch-hHHHHHHHHHHHHHHHH
Confidence 35799999752 1000112 46677888899999753
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.94 E-value=1.3e-27 Score=210.55 Aligned_cols=114 Identities=34% Similarity=0.535 Sum_probs=92.4
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChh------hHHHHHHHHHhhchhhHhhhhhhhhhhhh
Q 029071 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe------~~~~~reaEL~hGR~AMLg~~G~lv~e~l 147 (199)
.+|+++|++|+|+ .++|+||||++||||||||+||++ ++ +.+++|++||+||||||||++||+++|++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell 109 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEIL 109 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHh
Confidence 4567899999996 789999999999999999999974 33 56889999999999999999999999999
Q ss_pred cCCCCCCCC-CccccccchhhcccchhhHHH--HHHHHHHHHHHHHhhh
Q 029071 148 NKFGANCGP-EAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELY 193 (199)
Q Consensus 148 ~~~G~~~~p-~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~ 193 (199)
++.|..... ...||++|+....+..+|+++ ..+.++++++.|+|++
T Consensus 110 ~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~ 158 (262)
T PLN00048 110 GKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHR 158 (262)
T ss_pred ccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeee
Confidence 988875421 246999998655556677774 3445577778888864
No 8
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.93 E-value=1e-25 Score=197.06 Aligned_cols=99 Identities=27% Similarity=0.560 Sum_probs=83.1
Q ss_pred CCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCCC
Q 029071 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (199)
Q Consensus 78 ~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~ 157 (199)
.+|++|+|+ .+.|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++.
T Consensus 33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-------- 99 (246)
T PLN00100 33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-------- 99 (246)
T ss_pred CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc--------
Confidence 389999996 7899999999999999999999999999999999999999999999999999999752
Q ss_pred ccccccchhhcccchhhHHHHHHHHHHHHHHHHhhh
Q 029071 158 AVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 158 ~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
+.|+++|...... + . .....++++++.++|.+
T Consensus 100 P~w~~ag~~~~~~--~-~-~~l~~iqill~g~~E~~ 131 (246)
T PLN00100 100 PKFWEAGAEKYGL--D-L-QTLVLIQVVVMAVLEAA 131 (246)
T ss_pred cchhhcchhhhcc--c-h-hHHHHHHHHHHHHHhhh
Confidence 4599988753321 1 1 13445688888999875
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.92 E-value=1.1e-25 Score=197.49 Aligned_cols=109 Identities=28% Similarity=0.510 Sum_probs=90.5
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..++++|++|+|. .++|+||||++||||||||+||++|++++++||++||+||||||||++|++++|+++..|..
T Consensus 39 ~~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 39 PVVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred ccCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 3556799999985 67999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCccccccchhhcc-cchhhHHHHHHHHHHHHHHHHhhh
Q 029071 154 CGPEAVWFKVNLHFSR-SLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 154 ~~p~~~W~~aG~~~~~-~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
.. +.|++++..... ... .....++++++.|+|..
T Consensus 114 ~~--p~w~~ag~~~~~~~~~----~~~~~~q~~~mG~~E~~ 148 (252)
T PLN00147 114 NL--PVWYEAGAVKFEFAST----RTLFVVQLLLMGFAETK 148 (252)
T ss_pred CC--cchhhcccchhccccc----hHHHHHHHHHHHHHHHH
Confidence 43 569999865221 111 13455678889999974
No 10
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.92 E-value=1.9e-25 Score=196.32 Aligned_cols=107 Identities=29% Similarity=0.524 Sum_probs=84.7
Q ss_pred CCCccccccCc-cCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCC
Q 029071 78 PDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (199)
Q Consensus 78 ~~R~~~lp~G~-le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p 156 (199)
.+|+.|+|+-- -.+..+|+||||++||||||||++|++|++++++||++||+||||||||++||+++|++++
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 37778887410 0113579999999999999999999999999999999999999999999999999999874
Q ss_pred CccccccchhhcccchhhHHHHHHHHHHHHHHHHhhh
Q 029071 157 EAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 157 ~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
..||++|.....-....+. +++.++++++.|+|.+
T Consensus 122 -~~w~~aG~~~~~~~p~~~~-~l~~~q~~lmg~~E~~ 156 (255)
T PLN00170 122 -IPWFEAGADPGAIAPFSFG-SLLGTQLLLMGWVESK 156 (255)
T ss_pred -CChhhCCccccccCccchH-HHHHHHHHHhhhhhhe
Confidence 3599999863111111223 5677789999999975
No 11
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.91 E-value=6.7e-25 Score=191.63 Aligned_cols=103 Identities=30% Similarity=0.653 Sum_probs=81.7
Q ss_pred CCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCCC
Q 029071 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (199)
Q Consensus 78 ~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~ 157 (199)
.+|..|+|+ .+.|+||||++||||||||++|+++++++++||++||+||||||||++|++++|+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 477889996 7899999999999999999999999999999999999999999999999999999763
Q ss_pred ccccccchh--hcccchhhHHH--------HHHHHHHHHHHHHhhh
Q 029071 158 AVWFKVNLH--FSRSLLLYVVY--------LLMVLLMSCFCRLELY 193 (199)
Q Consensus 158 ~~W~~aG~~--~~~~~l~y~g~--------~~~p~~~~~~~~~e~~ 193 (199)
..|++++.. ..++...|+|+ ....++++.+.++|.+
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~ 154 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ 154 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 248888753 33445556553 1222355556666653
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.79 E-value=2.7e-19 Score=143.79 Aligned_cols=70 Identities=44% Similarity=0.774 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC--CCCCccccccc
Q 029071 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN--CGPEAVWFKVN 164 (199)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~--~~p~~~W~~aG 164 (199)
+|+||||+++||+||||+||++++ +++++|++||+|||+||||++|++++|++++.+.. ....+.|++++
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~ 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh
Confidence 589999999999999999999887 89999999999999999999999999999875431 11123487765
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=131.00 Aligned_cols=58 Identities=33% Similarity=0.524 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCC
Q 029071 94 IPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~k-dpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (199)
.|.-++|. .||++|||+||++ ++++++|+|++||||||+||||++|++++|.++..|.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 34468898 9999999999986 5678999999999999999999999999999876663
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.58 E-value=1.4e-15 Score=133.93 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 96 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 96 ~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+++.+|||++|||+||++|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 173 ~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 173 EGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred cccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 3455668999999999999999999999999999999999999999999999998864
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.56 E-value=2.3e-15 Score=129.24 Aligned_cols=54 Identities=30% Similarity=0.510 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCC-CCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 100 GEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL-~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+..||||||||+|| .+|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999 4689999999999999999999999999999999987763
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.53 E-value=4.6e-15 Score=131.19 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+|||++|||+||++|+|+++++|++||+||||||+|++||++|+++++.|+.
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 358999999999999999999999999999999999999999999999998864
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.48 E-value=2.5e-14 Score=126.64 Aligned_cols=54 Identities=30% Similarity=0.575 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
|..+|||+ |||+||++|+++++++|.+||+||||||++++|+++|+++++.|+.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 44689999 9999999999999999999999999999999999999999998874
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.46 E-value=4.1e-14 Score=126.58 Aligned_cols=54 Identities=33% Similarity=0.485 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+|||++|||+||++|+++++++|++||+||||||+|++||++|+++++.|+.
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 347999999999999999999999999999999999999999999999998874
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.43 E-value=8.2e-14 Score=122.16 Aligned_cols=53 Identities=32% Similarity=0.695 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhh-hcCCCCC
Q 029071 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA-FNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~-l~~~G~~ 153 (199)
+.+||| +|||+|+.+|+++++++|.+||+|||+||+|++|+++|+. +++.|+.
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 468999 8999999999999999999999999999999999999994 6777764
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.42 E-value=1.4e-13 Score=122.27 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 101 EVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~k-dpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
.+|||++|||+||.+ |+++++++|.+||+|||+||+|++|+++|+++++.|+.
T Consensus 192 ~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 589999999999975 89999999999999999999999999999999998874
No 21
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.40 E-value=1.8e-13 Score=110.13 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhh
Q 029071 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (199)
Q Consensus 97 yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~ 146 (199)
+.++..|||++|||+|+.+|+++..++|.+||+|||+||+|++|++++|.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999873
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.38 E-value=2.8e-13 Score=122.95 Aligned_cols=52 Identities=37% Similarity=0.567 Sum_probs=47.7
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+||+++|||+||++|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 3555569999999999999999999999999999999999999999998864
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.35 E-value=6.2e-13 Score=116.79 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=44.6
Q ss_pred CCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 108 fDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
|||+||++|+++++++|.+||+|||+||+|++|+++|+++|+.|+.
T Consensus 182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 9999999999999999999999999999999999999999998874
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.27 E-value=2.4e-12 Score=113.29 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..||||+|||+||++ +++|.+||+|||+||+|++|+++|+++++.|+.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 368999999999963 578999999999999999999999999998874
No 25
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.27 E-value=3.5e-12 Score=109.09 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=47.6
Q ss_pred ccccccCccCCCCCCCCC-CCCCCCCCCCC--CCCCCC-ChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCC
Q 029071 81 RIFLPEGLLDRSEIPEYL-TGEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (199)
Q Consensus 81 ~~~lp~G~le~~~~P~yL-~G~~PGD~GfD--PlGL~k-dpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~ 150 (199)
|+++-+|++|........ ++..||||+++ ++|+.. |+++.+++|.+||+|||+||+|++|+++||++++.
T Consensus 122 qi~~~ig~~E~~~~~~~~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 122 QILAFIGFLELAVMKDITGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHhhcccccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344445777621111111 25778854332 333322 78899999999999999999999999999999863
No 26
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.24 E-value=1.4e-11 Score=105.31 Aligned_cols=39 Identities=33% Similarity=0.746 Sum_probs=37.2
Q ss_pred CCCCCCC--CChhhHHHHHHHHHhhchhhHhhhhhhhhhhh
Q 029071 108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (199)
Q Consensus 108 fDPlGL~--kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~ 146 (199)
|||+||+ +|+++++++|++||+||||||||++|++++|.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 9999997 47899999999999999999999999999997
No 27
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.20 E-value=9.9e-12 Score=109.58 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+||+. |||+||++++ +++.+||+||||||+|++|+++|+++|+.|+.
T Consensus 184 YPGG~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 184 YPGGI-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred CCCCc-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 55553 9999998763 68999999999999999999999999998874
No 28
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.19 E-value=1.4e-11 Score=109.01 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCC---------ChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 102 VPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~k---------dpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+||+..|||+||++ |+++++++|.+||+|||+||++++|+++|. .++.|+.
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~ 250 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPL 250 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCch
Confidence 68877799999986 789999999999999999999999999999 5777764
No 29
>PHA02337 putative high light inducible protein
Probab=97.99 E-value=3.9e-06 Score=54.36 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=27.1
Q ss_pred HHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 124 QAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 124 reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+|..|||+||+|++..+..|+++++++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999998763
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.99 E-value=0.00025 Score=62.80 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHHHhhchhhHhhhhhhhhhhhhcCCCC
Q 029071 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 123 ~reaEL~hGR~AMLg~~G~lv~e~l~~~G~ 152 (199)
+.++|+.|||+||+|++..++.|.++|.|+
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gl 188 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGL 188 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcH
Confidence 466899999999999999999999998776
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=96.11 E-value=0.0026 Score=54.66 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhchhhHhhhhhhhhhhhhc-CCCCC
Q 029071 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN 153 (199)
Q Consensus 119 ~~~~~reaEL~hGR~AMLg~~G~lv~e~l~-~~G~~ 153 (199)
+.+..+..|+-|||+||+|++-.++.|+++ ++|+.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 345566779999999999999999999999 88874
No 32
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=21.65 E-value=31 Score=32.26 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=28.5
Q ss_pred hhhhcCCCCccccccCccCCCCCC--CCCCCCCCCCCCCCC---CCCCC
Q 029071 72 LAKWYGPDRRIFLPEGLLDRSEIP--EYLTGEVPGDYGYDP---FGLSK 115 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P--~yL~G~~PGD~GfDP---lGL~k 115 (199)
-++|||+.|....-+-.+ .+.| .|.--+..|.|+.|+ +.++.
T Consensus 73 Tsp~Ygqs~se~~lg~al--~~vPR~aYyIaTKvgRy~ld~~~~Fdfsa 119 (342)
T KOG1576|consen 73 TSPYYGQSRSEEGLGLAL--KDVPREAYYIATKVGRYELDYANMFDFSA 119 (342)
T ss_pred cCcccCcchhHHHHHHHH--hhCChhheeeeeeeeecccCccccccchH
Confidence 358999999977543222 4455 466667789999998 55553
Done!