Query 029071
Match_columns 199
No_of_seqs 186 out of 955
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:12:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2E-32 7E-37 235.5 11.9 116 74-193 15-141 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 7.9E-30 2.7E-34 221.3 3.1 108 75-195 6-163 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 9E-30 3.1E-34 223.6 2.8 113 72-195 56-168 (269)
4 2wsc_4 Chlorophyll A-B binding 99.9 5.1E-28 1.7E-32 210.5 0.9 112 73-195 45-157 (251)
5 2wsc_3 LHCA3, type II chloroph 99.9 4.5E-28 1.5E-32 213.4 0.1 114 75-194 51-173 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 7.6E-24 2.6E-28 183.4 4.5 105 79-196 44-158 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 3.7E-14 1.3E-18 123.2 3.9 52 101-153 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 2.2E-14 7.5E-19 126.4 2.0 54 100-153 201-254 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 9.9E-14 3.4E-18 119.3 5.2 54 99-153 153-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 5.2E-14 1.8E-18 123.6 0.7 54 100-153 193-247 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 5.2E-13 1.8E-17 115.7 1.4 54 99-153 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.1 1.8E-11 6.2E-16 106.4 1.3 47 101-153 183-229 (251)
13 3bbo_W Ribosomal protein L24; 29.0 12 0.0004 31.4 0.0 49 1-51 1-50 (191)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.98 E-value=2e-32 Score=235.46 Aligned_cols=116 Identities=47% Similarity=0.865 Sum_probs=97.2
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+|||+||++|| |+++ .+.|+||||++||||||||+||++|+|+++|||++|||||||||||++|++++|+++..|..
T Consensus 15 ~~~~~~r~~~l--~~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~ 91 (232)
T 2bhw_A 15 PWYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK 91 (232)
T ss_dssp TTSSTTCCCTT--GGGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCCCccccc--Cccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcC
Confidence 79999999999 4454 68999999999999999999999999999999999999999999999999999999987875
Q ss_pred CCCCccccccchh-hcccchhhHHHH----------HHHHHHHHHHHHhhh
Q 029071 154 CGPEAVWFKVNLH-FSRSLLLYVVYL----------LMVLLMSCFCRLELY 193 (199)
Q Consensus 154 ~~p~~~W~~aG~~-~~~~~l~y~g~~----------~~p~~~~~~~~~e~~ 193 (199)
.. ++.|+++|.+ +.+.+++|+++. ...++++++.++|.+
T Consensus 92 ~~-~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~ 141 (232)
T 2bhw_A 92 FG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 141 (232)
T ss_dssp CS-CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 54 6789999975 445567777641 223356666777765
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.95 E-value=7.9e-30 Score=221.35 Aligned_cols=108 Identities=31% Similarity=0.564 Sum_probs=54.9
Q ss_pred hcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhh-----------------------------------
Q 029071 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD----------------------------------- 119 (199)
Q Consensus 75 wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~----------------------------------- 119 (199)
|++++|++|+|+ .++|+||||++||||||||+||+++||.
T Consensus 6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T 3pl9_A 6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence 456799999996 8899999999999999999999999873
Q ss_pred --------HHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCCCccccccchhhcccchhhHHH-------HHHHHHH
Q 029071 120 --------FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVY-------LLMVLLM 184 (199)
Q Consensus 120 --------~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~~~W~~aG~~~~~~~l~y~g~-------~~~p~~~ 184 (199)
++|||++||+||||||||++|++++|++++ ..|+++|.+...++++|+++ ....+++
T Consensus 81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv 152 (243)
T 3pl9_A 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEV 152 (243)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------cccccccccccccccccccCccchhhHHHHHHHH
Confidence 789999999999999999999999999863 46999998755556777764 3445577
Q ss_pred HHHHHHhhhhh
Q 029071 185 SCFCRLELYFL 195 (199)
Q Consensus 185 ~~~~~~e~~~~ 195 (199)
+++.++|.+..
T Consensus 153 ~lmG~~E~~R~ 163 (243)
T 3pl9_A 153 LVIGYIEFQRN 163 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77888887654
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.95 E-value=9e-30 Score=223.55 Aligned_cols=113 Identities=33% Similarity=0.604 Sum_probs=58.7
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCC
Q 029071 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G 151 (199)
+..|||++|++|+|+ .++|+||||++||||||||+||++|+|+++|||++||+||||||||++|++++|++++.|
T Consensus 56 ~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G 130 (269)
T 2wsc_2 56 VCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130 (269)
T ss_dssp -------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTT
T ss_pred eecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCC
Confidence 457899999999995 789999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCccccccchhhcccchhhHHHHHHHHHHHHHHHHhhhhh
Q 029071 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYFL 195 (199)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~~ 195 (199)
.... +.|+++|........ .....++++++.|+|.+..
T Consensus 131 ~~~~--p~w~~aG~~~~~~~~----~~l~~~qi~liG~~E~~r~ 168 (269)
T 2wsc_2 131 ILNT--PSWYTAGEQEYFTDT----TTLFIVELVFIGWAEGRRW 168 (269)
T ss_dssp SSSC--CCCCSTTSSSSCCCT----TSHHHHHTTHHHHHHHHHH
T ss_pred cccC--ccccccchhhhhcch----HHHHHHHHHHHHHHHHHHH
Confidence 7743 569998864221111 0223456778899998753
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.93 E-value=5.1e-28 Score=210.45 Aligned_cols=112 Identities=31% Similarity=0.589 Sum_probs=59.4
Q ss_pred hhhcCC-CCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCC
Q 029071 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 73 ~~wyg~-~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G 151 (199)
..|||+ ||++|+|+ .++|+||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 468999 89999985 789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCccccccchhhcccchhhHHHHHHHHHHHHHHHHhhhhh
Q 029071 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYFL 195 (199)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~~ 195 (199)
+.. .+.|+++|.....+... ....++++++.++|.+..
T Consensus 120 ~~~--~p~w~~aG~~~~~~~~~----~l~~~qi~liG~~E~~r~ 157 (251)
T 2wsc_4 120 IIN--VPKWYAAGKEEYFASSS----TLFVIEFILSHYVEIRRW 157 (251)
T ss_dssp SSC--CCCCSCCCSSSCSSCSS----CTTTTHHHHHHTTTHHHH
T ss_pred ccC--CccccccchHhhhccch----HHHHHHHHHHHHHHHHHh
Confidence 874 35799988642111110 112235667888898653
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.93 E-value=4.5e-28 Score=213.41 Aligned_cols=114 Identities=32% Similarity=0.521 Sum_probs=60.0
Q ss_pred hcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhH------HHHHHHHHhhchhhHhhhhhhhhhhhhc
Q 029071 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFN 148 (199)
Q Consensus 75 wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~------~~~reaEL~hGR~AMLg~~G~lv~e~l~ 148 (199)
+||+||++|+|+ .+.|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|+++
T Consensus 51 ~~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~ 124 (276)
T 2wsc_3 51 KQGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILG 124 (276)
T ss_dssp ----------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCS
T ss_pred ccCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhc
Confidence 389999999995 7899999999999999999999 788989 9999999999999999999999999999
Q ss_pred CCCCCCCCC-ccccccchhhcccchhhHHH--HHHHHHHHHHHHHhhhh
Q 029071 149 KFGANCGPE-AVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELYF 194 (199)
Q Consensus 149 ~~G~~~~p~-~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~~ 194 (199)
+.|...... ..|++++.....+...|+++ ....++++++.++|.+.
T Consensus 125 ~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r 173 (276)
T 2wsc_3 125 KAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRR 173 (276)
T ss_dssp SCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTT
T ss_pred ccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 988764322 34999777655555566553 23445778889999865
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.88 E-value=7.6e-24 Score=183.45 Aligned_cols=105 Identities=31% Similarity=0.660 Sum_probs=62.9
Q ss_pred CCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCCCCCCc
Q 029071 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (199)
Q Consensus 79 ~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~~~p~~ 158 (199)
.|..|+|+ .+.|+||+|++||||||||+||++|+|+++|+|++||+||||||||++|++++|+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45678885 7899999999999999999999999999999999999999999999999999999763 2
Q ss_pred cccccchh--hcccchhhHHH--------HHHHHHHHHHHHHhhhhhh
Q 029071 159 VWFKVNLH--FSRSLLLYVVY--------LLMVLLMSCFCRLELYFLM 196 (199)
Q Consensus 159 ~W~~aG~~--~~~~~l~y~g~--------~~~p~~~~~~~~~e~~~~~ 196 (199)
.|++++.. +..+...|+++ ....++++.+.++|.+..+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~ 158 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM 158 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTS
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35554432 11222333321 2334466677788876443
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.44 E-value=3.7e-14 Score=123.16 Aligned_cols=52 Identities=37% Similarity=0.589 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
.+|||+ |||+||++|+++++++|.+||+|||+||+|++|+++++++++.|+.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 579999 9999999999999999999999999999999999999999998864
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.43 E-value=2.2e-14 Score=126.41 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+|||++|||+||++++++++++|++||+||||||||++|++++|++++.|+.
T Consensus 201 ~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~ 254 (276)
T 2wsc_3 201 PAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPY 254 (276)
T ss_dssp CTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCS
T ss_pred ccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChH
Confidence 458999999999999998889999999999999999999999999999998875
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.42 E-value=9.9e-14 Score=119.27 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
|+.+|||+ |||+||.+|+++++++|.+||+|||+||+|++|++++|++++.|+.
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689998 9999999999999999999999999999999999999999998863
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.38 E-value=5.2e-14 Score=123.63 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 100 GEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~k-dpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
..+|||++|||+||.+ ++|+++++|.+||+||||||+|++|++++|++++.|+.
T Consensus 193 ~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l 247 (269)
T 2wsc_2 193 VGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247 (269)
T ss_dssp CSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSS
T ss_pred cCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChH
Confidence 3689999999999985 78889999999999999999999999999999998875
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.28 E-value=5.2e-13 Score=115.66 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhh-hhcCCCCC
Q 029071 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e-~l~~~G~~ 153 (199)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|++++| .+++.|+.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 4568998 599999999999999999999999999999999999999 57888874
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.08 E-value=1.8e-11 Score=106.44 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
.+|||+ |||+++.+ ++++|.+||+|||+ |+|++|+++|+++++.|+.
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl 229 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPF 229 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHH
Confidence 379998 99999975 56789999999999 9999999999999998875
No 13
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.03 E-value=12 Score=31.40 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred Cccccc-ccCcccccccccccCCccccccccccCCCCCCCCCCCcceeeecc
Q 029071 1 MASLAA-SSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSK 51 (199)
Q Consensus 1 ma~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~ 51 (199)
||+.+. ++.++.|++++.|+|.|+.. ... +..+..++....-+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~ 50 (191)
T 3bbo_W 1 MAAMVLQSSFTSLSLSSNSFLGQRLFP-SPT-TLQVKTEGHSPCLIVMRIKR 50 (191)
T ss_dssp ----------------------------------------------------
T ss_pred CcchhhhhhhhccccccccccCcccCC-Ccc-ccCcccccCCceeeEecccH
Confidence 565433 34455577789999999941 111 22233333344445665554
Done!