Query 029071
Match_columns 199
No_of_seqs 186 out of 955
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 11:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029071.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029071hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 100.0 3.5E-32 2.5E-36 228.1 5.6 99 74-176 2-101 (218)
2 d1rwta_ f.43.1.1 (A:) Chloroph 99.4 2.9E-14 2.1E-18 118.3 4.9 51 102-153 143-193 (218)
3 d2co8a1 g.39.1.3 (A:44-76) Ned 9.6 36 0.0026 19.5 0.4 9 102-110 10-18 (33)
4 d1bdsa_ g.9.1.1 (A:) BDs-I def 8.8 64 0.0046 19.1 1.3 12 98-109 18-29 (43)
5 d2cara1 c.51.4.1 (A:1-194) Ino 6.9 1.1E+02 0.0077 22.7 2.2 34 105-138 148-185 (194)
6 d1sgva1 b.122.1.1 (A:236-292) 5.0 1E+02 0.0076 19.1 0.8 11 123-133 9-19 (57)
7 d1vkpa_ d.126.1.6 (A:) Agmatin 5.0 1.1E+02 0.008 25.0 1.2 32 69-100 192-223 (372)
8 d1vp2a_ c.51.4.1 (A:) Putative 4.9 1.4E+02 0.01 21.8 1.8 35 104-139 144-182 (189)
9 d1zbra1 d.126.1.6 (A:3-341) Pu 4.6 1.3E+02 0.0094 24.1 1.4 32 69-100 178-209 (339)
10 d1b78a_ c.51.4.1 (A:) XTP pyro 4.1 1.5E+02 0.011 21.5 1.3 34 105-138 139-176 (184)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.97 E-value=3.5e-32 Score=228.05 Aligned_cols=99 Identities=49% Similarity=0.941 Sum_probs=84.8
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
+||||||++|+| ++. ++.|+||||++||||||||+||++|+++++|+|++|||||||||||++|++++|+++..+..
T Consensus 2 ~~~~~~r~~~~~--~~~-~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~~ 78 (218)
T d1rwta_ 2 PWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 78 (218)
T ss_dssp TTSSTTCCCTTG--GGG-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCcccCC--ccc-cCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCCC
Confidence 799999999996 343 67999999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCccccccchhhc-ccchhhHH
Q 029071 154 CGPEAVWFKVNLHFS-RSLLLYVV 176 (199)
Q Consensus 154 ~~p~~~W~~aG~~~~-~~~l~y~g 176 (199)
.. ...|++++.... .+.+.+++
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~ 101 (218)
T d1rwta_ 79 FG-EAVWFKAGSQIFSEGGLDYLG 101 (218)
T ss_dssp CS-CCSHHHHGGGGGSTTCBCGGG
T ss_pred CC-CcccccccccccCcchhhhhc
Confidence 43 577888877633 33444544
No 2
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.43 E-value=2.9e-14 Score=118.34 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhchhhHhhhhhhhhhhhhcCCCCC
Q 029071 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~reaEL~hGR~AMLg~~G~lv~e~l~~~G~~ 153 (199)
.+| .+|||+++.+++|+++++|++||+||||||||++|+++||++++.|+.
T Consensus 143 ~~~-g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~ 193 (218)
T d1rwta_ 143 YPG-GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 193 (218)
T ss_dssp CCC-GGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred CCC-CCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHH
Confidence 344 489999999999999999999999999999999999999999998864
No 3
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.64 E-value=36 Score=19.48 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=6.6
Q ss_pred CCCCCCCCC
Q 029071 102 VPGDYGYDP 110 (199)
Q Consensus 102 ~PGD~GfDP 110 (199)
-||+|+++|
T Consensus 10 ~pG~Y~qhp 18 (33)
T d2co8a1 10 WPGGYEQHP 18 (33)
T ss_dssp CTTSEECCT
T ss_pred ccCcccCCC
Confidence 377888777
No 4
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=8.81 E-value=64 Score=19.06 Aligned_cols=12 Identities=58% Similarity=1.298 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCC
Q 029071 98 LTGEVPGDYGYD 109 (199)
Q Consensus 98 L~G~~PGD~GfD 109 (199)
|.|+.||.|||.
T Consensus 18 lrgtcpggygyt 29 (43)
T d1bdsa_ 18 LRGTCPGGYGYT 29 (43)
T ss_dssp SCSSCCTTTCCC
T ss_pred EecccCCCcccc
Confidence 678999999874
No 5
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase, ITPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.94 E-value=1.1e+02 Score=22.69 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=18.3
Q ss_pred CCCCCCC----CCCCChhhHHHHHHHHHhhchhhHhhh
Q 029071 105 DYGYDPF----GLSKKPDDFSKYQAYELIHARWAMLGA 138 (199)
Q Consensus 105 D~GfDPl----GL~kdpe~~~~~reaEL~hGR~AMLg~ 138 (199)
.|||||+ +..++-.++..-.-..+.|=.-|+--+
T Consensus 148 GFGYDpiFip~g~~kT~aEm~~~eKn~iSHR~~A~~kl 185 (194)
T d2cara1 148 DFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLEL 185 (194)
T ss_dssp TSTTGGGEEETTCSSCTTTSCHHHHHHHCHHHHHHHHH
T ss_pred CCCCceEEEeCCCCcchhhCCHHHhhhcCHHHHHHHHH
Confidence 4899996 333433333333334566766665543
No 6
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.97 E-value=1e+02 Score=19.09 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=8.6
Q ss_pred HHHHHHhhchh
Q 029071 123 YQAYELIHARW 133 (199)
Q Consensus 123 ~reaEL~hGR~ 133 (199)
-+..||.||||
T Consensus 9 ~Ea~~l~~Gr~ 19 (57)
T d1sgva1 9 AEASAAANGRS 19 (57)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCc
Confidence 35679999995
No 7
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.96 E-value=1.1e+02 Score=24.99 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=24.8
Q ss_pred hhhhhhhcCCCCccccccCccCCCCCCCCCCC
Q 029071 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100 (199)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G 100 (199)
...+..++|-++-+|||.|+++..+.-.|.|+
T Consensus 192 e~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~ 223 (372)
T d1vkpa_ 192 EEELKKYLGVQSFIWLPRGLYGDEDTNGHIDN 223 (372)
T ss_dssp HHHHHHHHCCCEEEEESCCCTTCTTTTCCGGG
T ss_pred HHHHHHhhCCceEEEEcCcccCCCCCccchhh
Confidence 67889999999999999888863444555554
No 8
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=4.93 E-value=1.4e+02 Score=21.80 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=18.6
Q ss_pred CCCCCCCC----CCCCChhhHHHHHHHHHhhchhhHhhhh
Q 029071 104 GDYGYDPF----GLSKKPDDFSKYQAYELIHARWAMLGAA 139 (199)
Q Consensus 104 GD~GfDPl----GL~kdpe~~~~~reaEL~hGR~AMLg~~ 139 (199)
+.|||||. |..++-.++.. ....|.|=+-|+--+.
T Consensus 144 ~GFGyDpiF~p~g~~kT~aEm~~-eKn~iSHR~~A~~kl~ 182 (189)
T d1vp2a_ 144 GGFGYDPFFIPDGYDKTFGEIPH-LKEKISHRSKAFRKLF 182 (189)
T ss_dssp CSSTTGGGEEETTCSSCTTTCGG-GHHHHSHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcchhhCHh-hHHhcCHHHHHHHHHH
Confidence 45899996 33343333321 1235667666655443
No 9
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.62 E-value=1.3e+02 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.2
Q ss_pred hhhhhhhcCCCCccccccCccCCCCCCCCCCC
Q 029071 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100 (199)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G 100 (199)
..++..++|-++-+|||.|.++..+.-.+.|+
T Consensus 178 e~~L~~~lg~~kviwl~~G~~~~DdTdGHID~ 209 (339)
T d1zbra1 178 IDTLKESLGVSRVLSLRHGALAGDDTDGHIDT 209 (339)
T ss_dssp HHHHHHHSCCSEEEEESSCCCTTCCSSSCGGG
T ss_pred HHHHHHhcCCceEEecCCCCcCCcccccccce
Confidence 67888999999999999887763444445554
No 10
>d1b78a_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.06 E-value=1.5e+02 Score=21.54 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=17.4
Q ss_pred CCCCCCC----CCCCChhhHHHHHHHHHhhchhhHhhh
Q 029071 105 DYGYDPF----GLSKKPDDFSKYQAYELIHARWAMLGA 138 (199)
Q Consensus 105 D~GfDPl----GL~kdpe~~~~~reaEL~hGR~AMLg~ 138 (199)
.|||||. +..++-.++..-.-..+.|=+-|+--+
T Consensus 139 GfGyDpiF~p~~~~kT~aEm~~~eKn~iSHR~~A~~kl 176 (184)
T d1b78a_ 139 GFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEF 176 (184)
T ss_dssp CSGGGGSEEETTCSSCGGGSCHHHHTTTSHHHHHHHHH
T ss_pred CCCCceEEEECCCCceeeeCCHHHhhhcCHHHHHHHHH
Confidence 3789996 334443333322333455655555443
Done!