Query 029072
Match_columns 199
No_of_seqs 121 out of 419
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.1 8.5E-10 1.8E-14 85.0 10.1 79 112-197 1-79 (146)
2 PRK09982 universal stress prot 98.3 4.8E-06 1E-10 65.1 7.9 40 111-150 4-43 (142)
3 PRK15456 universal stress prot 98.2 8.7E-06 1.9E-10 62.9 8.5 74 111-193 3-78 (142)
4 cd01987 USP_OKCHK USP domain i 98.1 5.8E-06 1.3E-10 61.9 5.9 39 112-150 1-39 (124)
5 PRK15005 universal stress prot 98.1 2E-05 4.4E-10 60.3 8.8 40 111-150 3-44 (144)
6 PRK15118 universal stress glob 98.1 1.7E-05 3.6E-10 61.2 7.1 40 110-149 3-42 (144)
7 cd00293 USP_Like Usp: Universa 98.0 3.9E-05 8.4E-10 55.5 8.6 70 112-197 1-70 (130)
8 PF00582 Usp: Universal stress 97.9 1.1E-05 2.5E-10 58.6 3.7 40 111-150 3-42 (140)
9 cd01988 Na_H_Antiporter_C The 97.8 0.00012 2.5E-09 54.5 8.3 69 112-196 1-69 (132)
10 PRK10116 universal stress prot 97.7 0.00024 5.3E-09 54.3 8.3 71 110-189 3-73 (142)
11 PRK11175 universal stress prot 97.6 0.00047 1E-08 59.3 8.8 79 111-196 4-82 (305)
12 PRK12652 putative monovalent c 97.4 0.00095 2.1E-08 61.6 9.0 41 110-150 5-47 (357)
13 PRK11175 universal stress prot 96.1 0.035 7.6E-07 47.7 8.4 42 109-150 151-200 (305)
14 COG0589 UspA Universal stress 95.6 0.18 3.8E-06 37.7 9.5 41 110-150 5-46 (154)
15 cd01984 AANH_like Adenine nucl 88.2 0.76 1.6E-05 32.6 3.7 34 113-147 1-34 (86)
16 PF01171 ATP_bind_3: PP-loop f 82.3 2.9 6.2E-05 34.1 5.0 38 112-150 1-39 (182)
17 PRK10490 sensor protein KdpD; 82.3 2.3 5E-05 43.5 5.3 41 109-149 249-289 (895)
18 COG0037 MesJ tRNA(Ile)-lysidin 79.6 4 8.6E-05 35.2 5.2 38 111-150 22-59 (298)
19 TIGR02432 lysidine_TilS_N tRNA 78.5 3 6.5E-05 33.7 3.8 38 112-149 1-38 (189)
20 PRK10660 tilS tRNA(Ile)-lysidi 75.2 10 0.00022 35.8 6.9 39 110-149 15-55 (436)
21 cd01992 PP-ATPase N-terminal d 66.0 9.1 0.0002 30.6 3.9 38 112-149 1-38 (185)
22 PRK10696 tRNA 2-thiocytidine b 59.1 23 0.0005 30.7 5.4 38 110-148 29-69 (258)
23 cd01993 Alpha_ANH_like_II This 57.2 21 0.00046 28.2 4.5 38 112-149 1-40 (185)
24 PF15531 Toxin_51: Putative to 56.9 16 0.00035 29.9 3.7 52 70-135 27-81 (128)
25 cd01712 ThiI ThiI is required 50.6 30 0.00064 27.8 4.4 34 112-149 1-34 (177)
26 cd01986 Alpha_ANH_like Adenine 50.1 99 0.0021 22.6 7.4 34 113-150 1-34 (103)
27 TIGR00268 conserved hypothetic 44.3 39 0.00084 29.2 4.4 35 111-149 13-47 (252)
28 PF10686 DUF2493: Protein of u 43.9 53 0.0011 23.7 4.4 39 110-148 3-41 (71)
29 cd01994 Alpha_ANH_like_IV This 42.2 45 0.00098 28.0 4.4 32 112-147 1-32 (194)
30 TIGR00290 MJ0570_dom MJ0570-re 40.8 50 0.0011 28.8 4.6 35 112-150 2-36 (223)
31 COG2205 KdpD Osmosensitive K+ 36.1 1E+02 0.0022 32.4 6.6 41 110-150 248-288 (890)
32 cd01997 GMP_synthase_C The C-t 35.8 1.1E+02 0.0024 27.6 6.2 35 112-149 1-35 (295)
33 PRK08349 hypothetical protein; 35.8 74 0.0016 26.3 4.7 34 111-148 1-34 (198)
34 cd01990 Alpha_ANH_like_I This 35.7 57 0.0012 26.6 4.0 34 113-149 1-34 (202)
35 PRK06871 DNA polymerase III su 35.6 1.7E+02 0.0037 26.9 7.4 75 72-156 76-154 (325)
36 TIGR00884 guaA_Cterm GMP synth 34.9 69 0.0015 29.1 4.7 36 111-149 17-52 (311)
37 cd01713 PAPS_reductase This do 34.0 66 0.0014 24.4 3.8 37 112-149 1-37 (173)
38 COG2104 ThiS Sulfur transfer p 33.3 92 0.002 22.4 4.2 33 110-147 31-65 (68)
39 PRK13820 argininosuccinate syn 32.5 82 0.0018 29.8 4.9 36 111-148 3-38 (394)
40 cd01995 ExsB ExsB is a transcr 30.8 81 0.0018 25.0 4.0 33 112-148 1-33 (169)
41 PF13362 Toprim_3: Toprim doma 29.6 1.3E+02 0.0028 21.7 4.6 36 109-144 40-77 (96)
42 COG2102 Predicted ATPases of P 28.9 99 0.0021 27.4 4.5 36 112-151 2-38 (223)
43 TIGR00032 argG argininosuccina 28.7 83 0.0018 29.7 4.3 34 112-149 1-34 (394)
44 TIGR00289 conserved hypothetic 28.4 1.1E+02 0.0023 26.7 4.6 34 112-149 2-35 (222)
45 TIGR00342 thiazole biosynthesi 27.9 1.3E+02 0.0027 27.8 5.3 36 109-148 171-206 (371)
46 PRK14092 2-amino-4-hydroxy-6-h 27.8 1.5E+02 0.0033 24.7 5.3 32 105-136 2-34 (163)
47 cd01832 SGNH_hydrolase_like_1 27.8 2.9E+02 0.0063 21.4 8.0 38 111-148 69-115 (185)
48 PLN00200 argininosuccinate syn 27.6 1.2E+02 0.0027 28.8 5.2 37 110-149 5-41 (404)
49 PRK00919 GMP synthase subunit 27.1 1.3E+02 0.0028 27.5 5.1 37 111-150 22-58 (307)
50 KOG3205 Rho GDP-dissociation i 27.0 41 0.00089 29.4 1.8 52 42-96 5-56 (200)
51 PRK00509 argininosuccinate syn 25.9 1.3E+02 0.0027 28.7 4.9 36 111-149 3-38 (399)
52 cd01996 Alpha_ANH_like_III Thi 25.2 1.3E+02 0.0029 23.2 4.3 34 112-148 3-36 (154)
53 PRK05564 DNA polymerase III su 25.2 2.9E+02 0.0063 24.3 6.9 95 72-175 62-162 (313)
54 PF13155 Toprim_2: Toprim-like 24.5 1.3E+02 0.0028 21.4 3.8 27 111-137 48-74 (96)
55 PF08874 DUF1835: Domain of un 24.5 2.1E+02 0.0046 21.6 5.2 37 110-146 86-122 (124)
56 cd03364 TOPRIM_DnaG_primases T 22.1 2E+02 0.0042 20.1 4.3 32 111-142 44-75 (79)
57 KOG2130 Phosphatidylserine-spe 21.8 42 0.00091 31.8 0.9 10 50-59 365-374 (407)
58 PRK00074 guaA GMP synthase; Re 21.8 1.6E+02 0.0035 28.5 4.9 37 110-149 215-251 (511)
59 PRK05707 DNA polymerase III su 20.6 4.6E+02 0.0099 23.9 7.4 76 71-156 73-153 (328)
60 smart00493 TOPRIM topoisomeras 20.2 1.5E+02 0.0031 20.1 3.2 25 111-135 48-72 (76)
61 PRK10922 3-octaprenyl-4-hydrox 20.0 1.4E+02 0.0031 28.8 4.2 37 111-147 395-433 (497)
62 PF04086 SRP-alpha_N: Signal r 20.0 26 0.00056 30.6 -0.8 25 122-150 24-48 (279)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.10 E-value=8.5e-10 Score=84.96 Aligned_cols=79 Identities=30% Similarity=0.510 Sum_probs=61.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i 191 (199)
+|+||||+|+.|++||+||++.....+..|+||||.++....+...+ .......+..+.+++++++|+++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988777899999999876533322211 11344556677788899999999999
Q ss_pred hhhCCC
Q 029072 192 CSQSKV 197 (199)
Q Consensus 192 C~~kkV 197 (199)
|.+.++
T Consensus 74 ~~~~~~ 79 (146)
T cd01989 74 CSRKGV 79 (146)
T ss_pred HhhcCC
Confidence 976654
No 2
>PRK09982 universal stress protein UspD; Provisional
Probab=98.25 E-value=4.8e-06 Score=65.06 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=36.1
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
++|+||||+|+.|++||+||++-....+.+|+|+||.++.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~ 43 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGL 43 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCc
Confidence 5899999999999999999998776678899999998764
No 3
>PRK15456 universal stress protein UspG; Provisional
Probab=98.21 E-value=8.7e-06 Score=62.91 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=48.5
Q ss_pred CEEEEEeCCC--cchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 029072 111 DIIYVAVGKS--QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (199)
Q Consensus 111 rkV~VAVD~S--e~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky 188 (199)
++|+||||+| +.|++||+||++ |.+....|+|+||.++..... ... . ......+.+..++..++.|+++
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~-la~~~~~l~llhv~~~~~~~~--~~~--~----~~~~~~~~~~~~~~~~~~l~~~ 73 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEF-LAQDDGVIHLLHVLPGSASLS--LHR--F----AADVRRFEEHLQHEAEERLQTM 73 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHH-HHhcCCeEEEEEEecCccccc--ccc--c----ccchhhHHHHHHHHHHHHHHHH
Confidence 5899999998 489999999996 444356899999997652111 000 0 0122335555666677777777
Q ss_pred HHHhh
Q 029072 189 LDTCS 193 (199)
Q Consensus 189 ~~iC~ 193 (199)
...+.
T Consensus 74 ~~~~~ 78 (142)
T PRK15456 74 VSHFT 78 (142)
T ss_pred HHHhC
Confidence 66553
No 4
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.13 E-value=5.8e-06 Score=61.90 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=34.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
+|+||||+++.+++||+||++.....+..|.||||.++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 39 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPR 39 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 589999999999999999997665667899999998753
No 5
>PRK15005 universal stress protein F; Provisional
Probab=98.12 E-value=2e-05 Score=60.26 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.2
Q ss_pred CEEEEEeCCCcc--hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~--Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
++|+||||+|+. +++||+||++-..+.+..|+|+||.++.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~ 44 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL 44 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccC
Confidence 589999999998 5899999999776778899999998764
No 6
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.05 E-value=1.7e-05 Score=61.20 Aligned_cols=40 Identities=25% Similarity=0.108 Sum_probs=34.7
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.++|+||||+|+.|++||+||++-....+..|.|+||.++
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~ 42 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVN 42 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccC
Confidence 3689999999999999999999976556789999999543
No 7
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.05 E-value=3.9e-05 Score=55.46 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=54.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i 191 (199)
+|+||+|.++.++.+++||++-....+..|.++||.++....+ . .+......+.++.|++|...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~------------~----~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA------------A----ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc------------h----hHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999887788999999987542111 0 34455667778888888888
Q ss_pred hhhCCC
Q 029072 192 CSQSKV 197 (199)
Q Consensus 192 C~~kkV 197 (199)
|...++
T Consensus 65 ~~~~~~ 70 (130)
T cd00293 65 LAEAGV 70 (130)
T ss_pred HhcCCC
Confidence 865544
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.91 E-value=1.1e-05 Score=58.62 Aligned_cols=40 Identities=35% Similarity=0.429 Sum_probs=36.9
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
++|+||+|+++.++.||+||++.....+..|.++||.++.
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~ 42 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPP 42 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccc
Confidence 6999999999999999999999777778999999999875
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=97.85 E-value=0.00012 Score=54.51 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=48.0
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~i 191 (199)
+|+|+||+++.++.||+||..-....+..|+|+||.++..... . . ......+..+++++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~-------~-----~----~~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS-------P-----S----QLEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC-------c-----c----hhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999887766678999999987642111 0 0 1112334556677777666
Q ss_pred hhhCC
Q 029072 192 CSQSK 196 (199)
Q Consensus 192 C~~kk 196 (199)
+++.+
T Consensus 65 ~~~~g 69 (132)
T cd01988 65 AASLG 69 (132)
T ss_pred hhhcC
Confidence 65544
No 10
>PRK10116 universal stress protein UspC; Provisional
Probab=97.71 E-value=0.00024 Score=54.28 Aligned_cols=71 Identities=20% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~ 189 (199)
.++|+||+|.+..+.+||++|++-..+-+.+|.|+||.++..... + ......+.+.+..+++.++.|+++.
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN---Q------FAAPMLEDLRSVMQEETQSFLDKLI 73 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch---h------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999886655577999999986542111 1 1122334455555556666666553
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=97.55 E-value=0.00047 Score=59.27 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~ 190 (199)
++|+|++|+|+.+.+||+||+.-..+.+..|+|+||.++... +.+ +.+ ........+++..++.++.|+++..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EMT-TLL-----SPDEREAMRQGVISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hhh-ccc-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999966556678999999765321 111 111 1122222333334445666777666
Q ss_pred HhhhCC
Q 029072 191 TCSQSK 196 (199)
Q Consensus 191 iC~~kk 196 (199)
.|+..+
T Consensus 77 ~~~~~~ 82 (305)
T PRK11175 77 PYLDAG 82 (305)
T ss_pred HHhhcC
Confidence 665544
No 12
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.37 E-value=0.00095 Score=61.62 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCC--CCeEEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~--gd~LVLVHV~pp~ 150 (199)
.+||+||||+|+.|++||+.|++-.... +.+|.||||.++.
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~ 47 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGR 47 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCc
Confidence 5799999999999999999999977553 5799999998753
No 13
>PRK11175 universal stress protein UspE; Provisional
Probab=96.08 E-value=0.035 Score=47.71 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCcch-------HHHHHHHHHhccCC-CCeEEEEEecCCC
Q 029072 109 EEDIIYVAVGKSQSS-------MDALSWTLRHAVNP-STLIFLIHVFPQV 150 (199)
Q Consensus 109 ~erkV~VAVD~Se~S-------k~ALkWALdNLv~~-gd~LVLVHV~pp~ 150 (199)
..++|+||+|+++.+ ..||++|++-...- +..|.|+||.+..
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~ 200 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVT 200 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCc
Confidence 357999999997653 68999998755433 6789999998654
No 14
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.61 E-value=0.18 Score=37.71 Aligned_cols=41 Identities=24% Similarity=0.213 Sum_probs=36.3
Q ss_pred CCEEEEEeC-CCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 110 EDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD-~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.++|++++| +++.++.|+.||++.....+..+.++||.+..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~ 46 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPL 46 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccc
Confidence 469999999 99999999999999887777788899998765
No 15
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=88.21 E-value=0.76 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=27.9
Q ss_pred EEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 113 V~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
|+|+++++..|..+|.||.+.- +.+..++++|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5799999999999999998864 345577777775
No 16
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=82.33 E-value=2.9 Score=34.09 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=27.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhcc-CCCCeEEEEEecCCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQV 150 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv-~~gd~LVLVHV~pp~ 150 (199)
||+|||-|++.|+ ||.+.|..+. ..+..|.++||....
T Consensus 1 ki~va~SGG~DS~-~Ll~~l~~~~~~~~~~~~~~~vdh~~ 39 (182)
T PF01171_consen 1 KILVAVSGGKDSM-ALLHLLKELRRRNGIKLIAVHVDHGL 39 (182)
T ss_dssp EEEEE--SSHHHH-HHHHHHHHHHTTTTTEEEEEEEE-ST
T ss_pred CEEEEEcCCHHHH-HHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 6999999999998 5556666665 345699999998654
No 17
>PRK10490 sensor protein KdpD; Provisional
Probab=82.30 E-value=2.3 Score=43.47 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
...+|+|||++++++.+++++|.+--.+-+..+++|||..+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~ 289 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETP 289 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 45789999999999999999998876666779999999865
No 18
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=79.64 E-value=4 Score=35.25 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=30.2
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.+|+|||-|.+.|..+| +.|..+... -.+.++||.+..
T Consensus 22 ~~ilVavSGGkDS~~ll-~~L~~l~~~-~~~~a~~Vd~~~ 59 (298)
T COG0037 22 YKILVAVSGGKDSLALL-HLLKELGRR-IEVEAVHVDHGL 59 (298)
T ss_pred CeEEEEeCCChHHHHHH-HHHHHhccC-ceEEEEEecCCC
Confidence 59999999999999665 666666433 689999998754
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=78.51 E-value=3 Score=33.72 Aligned_cols=38 Identities=26% Similarity=0.173 Sum_probs=29.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+.+++.|.-+|.++.+-....+..+.+|||...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58999999999998888777644333456999999643
No 20
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=75.25 E-value=10 Score=35.84 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhcc--CCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAV--NPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv--~~gd~LVLVHV~pp 149 (199)
..+|+|||-|+..|+- |.+.+..+. ..+..|+.+||...
T Consensus 15 ~~~ilvavSGG~DS~~-Ll~~l~~~~~~~~~~~l~a~hvnhg 55 (436)
T PRK10660 15 SRQILVAFSGGLDSTV-LLHLLVQWRTENPGVTLRAIHVHHG 55 (436)
T ss_pred CCeEEEEecCCHHHHH-HHHHHHHHHHhcCCCeEEEEEEeCC
Confidence 3689999999999995 445555553 34678999999754
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=65.98 E-value=9.1 Score=30.55 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=28.5
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+.++..|.-++.++.+-...-+..|.+||+...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 58999999999998887776544222457999999654
No 22
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=59.15 E-value=23 Score=30.66 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=27.8
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccC---CCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVN---PSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~---~gd~LVLVHV~p 148 (199)
..+|+|||-|+..|...|.|+. .+.. .+..|+.||+..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~-~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILL-NLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHH-HHHHhCCCCeEEEEEEecC
Confidence 4699999999999996665554 4432 234799999864
No 23
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.16 E-value=21 Score=28.18 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=27.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccC-C-CCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVN-P-STLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~-~-gd~LVLVHV~pp 149 (199)
+|+||+-+...|..+|.++.+-..+ + +-.++.+|+...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 5899999999999887666553321 1 557899999754
No 24
>PF15531 Toxin_51: Putative toxin 51
Probab=56.90 E-value=16 Score=29.88 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=36.4
Q ss_pred ccchhccCCCCCCCCCchhhhhhhcccccccccCCCCCCCCCEEEEEeCC---CcchHHHHHHHHHhcc
Q 029072 70 QLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGK---SQSSMDALSWTLRHAV 135 (199)
Q Consensus 70 ~~~~e~~~~~~~~~~~~~~~e~~e~~~~s~~~~~~~~~~~erkV~VAVD~---Se~Sk~ALkWALdNLv 135 (199)
.-.++++++++.|.=|..+.-.++- ..-++.|+.|+ .+.-..||.|++++=.
T Consensus 27 ~~~~~~~~g~~~p~W~~~V~~Ai~N--------------p~Vri~v~lDg~~~~~~a~eaf~~~~~~g~ 81 (128)
T PF15531_consen 27 NNGFSMNPGESRPDWMEPVEDAIGN--------------PNVRIHVSLDGMPGAENADEAFQNAYRRGA 81 (128)
T ss_pred ccccccCccccchhhHHHHHHhhcC--------------CCcEEEEEeccccCCccHHHHHHHHHHhcc
Confidence 4467888887666666665544442 13489999999 5677788999988763
No 25
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=50.58 E-value=30 Score=27.84 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=28.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+-+...|..++.|+.+ .|..++.||+-.+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 589999999999999988866 2678999999654
No 26
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=50.07 E-value=99 Score=22.59 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.2
Q ss_pred EEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 113 V~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
|+||+-+...|...+.++.+.. ..++.+|+.+..
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCC
Confidence 5899999999998887775532 269999997654
No 27
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=44.25 E-value=39 Score=29.23 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=28.7
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-+...|.-++.|+.+. |..++.||+..+
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 58999999999999888887663 567889999643
No 28
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=43.85 E-value=53 Score=23.66 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=26.5
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
..+|+|+-+..-.-...+.=+|+.+++.-..++|||=-.
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 468888887765555566666677665446677888754
No 29
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=42.22 E-value=45 Score=28.03 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
||+|++-+.+.|..|+.||.+. |..++.++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~ 32 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNL 32 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEE
Confidence 5789999999999999999882 4455555554
No 30
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=40.83 E-value=50 Score=28.85 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
|+++-.-+.|.|.+||.||+++ + +-++|+++.|..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---~v~~L~t~~~~~ 36 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---EVISLVNIMPEN 36 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---eeEEEEEEecCC
Confidence 5777888999999999999999 4 467788887653
No 31
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=36.15 E-value=1e+02 Score=32.45 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
..+|+|+|+.+..|.+-++||.+---+-...+..|||-.|.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~ 288 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPE 288 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 47999999999999999999977555567789999998664
No 32
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=35.85 E-value=1.1e+02 Score=27.60 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=27.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+-|...|.-++.++.+-+ |..++.||+..+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CCcEEEEEecCC
Confidence 58999999999998887776533 467999999755
No 33
>PRK08349 hypothetical protein; Validated
Probab=35.77 E-value=74 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.0
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
++++|++-|...|.-|+-|+.+ .|..|+.||+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3789999999999988855543 356899999974
No 34
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=35.66 E-value=57 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=25.5
Q ss_pred EEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 113 V~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
|+||+-|...|..++.|+.+.+. ..++.||+..+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---DRVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---CcEEEEEeCCC
Confidence 57889999999988888766542 26788888644
No 35
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=35.58 E-value=1.7e+02 Score=26.87 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=43.8
Q ss_pred chhccCCCCCCCCCchhhhhhhc-ccccccccCCCCCCCCCEEEEE--eCC-CcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072 72 LSEINDGNGMPMPLAPIKEEIES-SFFSFDVANGNGTQEEDIIYVA--VGK-SQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 72 ~~e~~~~~~~~~~~~~~~e~~e~-~~~s~~~~~~~~~~~erkV~VA--VD~-Se~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
+..|.+.++-.-..+.||+.++. +.++. ...+||+|= .|. ...+..||.=+|+.= |...++++-..
T Consensus 76 ~~~i~p~~~~~I~id~iR~l~~~~~~~~~--------~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--p~~~~fiL~t~ 145 (325)
T PRK06871 76 FHILEPIDNKDIGVDQVREINEKVSQHAQ--------QGGNKVVYIQGAERLTEAAANALLKTLEEP--RPNTYFLLQAD 145 (325)
T ss_pred EEEEccccCCCCCHHHHHHHHHHHhhccc--------cCCceEEEEechhhhCHHHHHHHHHHhcCC--CCCeEEEEEEC
Confidence 44455433334568889987663 21111 235788872 333 667777776666653 66677777666
Q ss_pred CCCCccCCC
Q 029072 148 PQVKFVPSP 156 (199)
Q Consensus 148 pp~~~Iptp 156 (199)
.+....|+.
T Consensus 146 ~~~~llpTI 154 (325)
T PRK06871 146 LSAALLPTI 154 (325)
T ss_pred ChHhCchHH
Confidence 665566654
No 36
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=34.92 E-value=69 Score=29.10 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=30.1
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-|...|.-++.|+.+.+ |+.++.|||...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeCC
Confidence 589999999999999888887654 468999999754
No 37
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=34.02 E-value=66 Score=24.38 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=25.3
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+-+.+.|.-.|..+.+... +...+.+||+-..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~-~~~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALP-ELKPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcc-cccCceEEEeCCC
Confidence 478899999999877766555442 2246778888643
No 38
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=33.28 E-value=92 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=25.1
Q ss_pred CCEEEEEeCC--CcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072 110 EDIIYVAVGK--SQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 110 erkV~VAVD~--Se~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
.+.|+|+|++ -..|+ |+ +..++.+|+|-+||+.
T Consensus 31 ~~~vav~vNg~iVpr~~----~~-~~~l~~gD~ievv~~v 65 (68)
T COG2104 31 PEGVAVAVNGEIVPRSQ----WA-DTILKEGDRIEVVRVV 65 (68)
T ss_pred CceEEEEECCEEccchh----hh-hccccCCCEEEEEEee
Confidence 4799999999 44443 76 4555688999999986
No 39
>PRK13820 argininosuccinate synthase; Provisional
Probab=32.48 E-value=82 Score=29.85 Aligned_cols=36 Identities=6% Similarity=-0.061 Sum_probs=29.4
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
.+|+||+-+...|.-++.|+.+.+ +-+.|+.+|+..
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~--g~~~Viav~vd~ 38 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY--GYDEVITVTVDV 38 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc--CCCEEEEEEEEC
Confidence 589999999999999999987654 223799999964
No 40
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=30.81 E-value=81 Score=24.96 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=26.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
||+|++-+...|..++.++.+. +..++.+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 5889999999999998777653 44688888864
No 41
>PF13362 Toprim_3: Toprim domain
Probab=29.63 E-value=1.3e+02 Score=21.72 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=26.8
Q ss_pred CCCEEEEEeCCCcc--hHHHHHHHHHhccCCCCeEEEE
Q 029072 109 EEDIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLI 144 (199)
Q Consensus 109 ~erkV~VAVD~Se~--Sk~ALkWALdNLv~~gd~LVLV 144 (199)
..++|+|+.|.... .+.|..=+.+.+.+.|-.+.++
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 45799999999887 8888877778886655554443
No 42
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=28.87 E-value=99 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=28.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHh-ccCCCCeEEEEEecCCCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRH-AVNPSTLIFLIHVFPQVK 151 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdN-Lv~~gd~LVLVHV~pp~~ 151 (199)
++++=+-+.|.|-+|+-||++. + +-+.|++++|...
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~----eV~~Ll~~~p~~~ 38 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGH----EVVYLLTVKPENG 38 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCC----eeEEEEEEecCCC
Confidence 5666778899999999999875 3 4578888887653
No 43
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=28.68 E-value=83 Score=29.71 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=28.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+||+-+.-.|.-++.|+.+. |..|+.||+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999999999999998764 668999999643
No 44
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=28.35 E-value=1.1e+02 Score=26.75 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.4
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
+|+|..-+.+.|.+|+.||+++ + +-+.|+++.+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~---~V~~L~~~~~~ 35 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-H---EVISLVGVFSE 35 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-C---eeEEEEEEcCC
Confidence 6888899999999999999997 3 56777777765
No 45
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=27.89 E-value=1.3e+02 Score=27.84 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
...+|+|++-+.-.|.-|+-|+.+ .|..++.||..-
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~ 206 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFN 206 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeC
Confidence 358999999999999999877645 367899999973
No 46
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=27.82 E-value=1.5e+02 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.9
Q ss_pred CCCCCCCEEEEEeCCCc-chHHHHHHHHHhccC
Q 029072 105 NGTQEEDIIYVAVGKSQ-SSMDALSWTLRHAVN 136 (199)
Q Consensus 105 ~~~~~erkV~VAVD~Se-~Sk~ALkWALdNLv~ 136 (199)
||++...+|+||+|-.- ..+..|+.|++.|..
T Consensus 2 ~~~~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~ 34 (163)
T PRK14092 2 NGSPASALAYVGLGANLGDAAATLRSVLAELAA 34 (163)
T ss_pred CCCCcCCEEEEEecCchHhHHHHHHHHHHHHHh
Confidence 67788899999999954 588899999999953
No 47
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=27.77 E-value=2.9e+02 Score=21.41 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=24.6
Q ss_pred CEEEEEeCCCcc---------hHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 111 DIIYVAVGKSQS---------SMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 111 rkV~VAVD~Se~---------Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
+.|+|+++..+. -+..++..++.+..++..|+|+...+
T Consensus 69 d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~ 115 (185)
T cd01832 69 DLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPD 115 (185)
T ss_pred CEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 467777766322 25667777777766677788876543
No 48
>PLN00200 argininosuccinate synthase; Provisional
Probab=27.64 E-value=1.2e+02 Score=28.80 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=30.7
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
..+|+||+-+...|.-++.|+.+.+ |..|+.||+.-+
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e~~---G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRENY---GCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhh---CCeEEEEEEECC
Confidence 3599999999999999999998764 457888888644
No 49
>PRK00919 GMP synthase subunit B; Validated
Probab=27.13 E-value=1.3e+02 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=30.7
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.+|+||+-|...|.-++.|+.+-+ |+.++.||+..+.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~l---G~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAI---GDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHh---CCeEEEEEEECCC
Confidence 589999999999999998887744 5789999997553
No 50
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=26.97 E-value=41 Score=29.38 Aligned_cols=52 Identities=31% Similarity=0.365 Sum_probs=40.3
Q ss_pred CCcccchhhhhhhhhhhhccCCCCCCCcccchhccCCCCCCCCCchhhhhhhccc
Q 029072 42 GSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSF 96 (199)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~e~~~ 96 (199)
-++|+-..+.++|+++..+|-..---+-.|+-|+..+| .+|..-+|-+.+++
T Consensus 5 ~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdD---ESL~kwKe~Llg~~ 56 (200)
T KOG3205|consen 5 ESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDD---ESLRKWKEQLLGSV 56 (200)
T ss_pred ccccccCCCcccccccccccCCCchhhHHHHHhcCcch---HHHHHHHHHhCCCC
Confidence 34455666677677777789888888999999999877 78888888877654
No 51
>PRK00509 argininosuccinate synthase; Provisional
Probab=25.87 E-value=1.3e+02 Score=28.69 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=30.5
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-+.-.|.-++.|+.+.+ |..++.||+.-+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---G~eViavt~d~G 38 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---GCEVIAFTADVG 38 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---CCeEEEEEEecC
Confidence 589999999999999999998875 457888888654
No 52
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=25.24 E-value=1.3e+02 Score=23.16 Aligned_cols=34 Identities=15% Similarity=-0.079 Sum_probs=26.9
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
.|+||+-+...|..++.|+.+.+. ..++.+|+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---LNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---CceEEEEeCC
Confidence 589999999999999999877541 2677788854
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=25.16 E-value=2.9e+02 Score=24.32 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=49.2
Q ss_pred chhccCCCCCCCCCchhhhhhhcccccccccCCCCCCCCCEEEEEeC--C-CcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 72 LSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVG--K-SQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 72 ~~e~~~~~~~~~~~~~~~e~~e~~~~s~~~~~~~~~~~erkV~VAVD--~-Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
+.++.+.++..-..+.||+.++.-.... + ...+||+|--+ . ++....||.-+|++- |...++|+-...
T Consensus 62 ~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~------~~~~kv~iI~~ad~m~~~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 62 IIEFKPINKKSIGVDDIRNIIEEVNKKP-Y------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred eEEeccccCCCCCHHHHHHHHHHHhcCc-c------cCCceEEEEechhhcCHHHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 4455542333345778898877311111 0 13567777544 3 777888888888875 555544444444
Q ss_pred CCCccCCCC--C-CCCCCCCChHHHHHHHH
Q 029072 149 QVKFVPSPL--G-KLPRNQVNPEQLETFMA 175 (199)
Q Consensus 149 p~~~Iptp~--G-~iP~s~~~~e~vea~~~ 175 (199)
+....|+.- + .+....+.++.+..+..
T Consensus 133 ~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 133 LEQILDTIKSRCQIYKLNRLSKEEIEKFIS 162 (313)
T ss_pred hHhCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 443444322 1 22222234555555443
No 54
>PF13155 Toprim_2: Toprim-like
Probab=24.53 E-value=1.3e+02 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=23.9
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNP 137 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~ 137 (199)
++|++|.|.++..+.|.+...+.|...
T Consensus 48 ~~i~l~~DnD~aG~~~~~~~~~~l~~~ 74 (96)
T PF13155_consen 48 KKIVLAFDNDEAGRKAAEKLQKELKEE 74 (96)
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999888543
No 55
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=24.47 E-value=2.1e+02 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.3
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEe
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV 146 (199)
...|+|=.+.+.+.+--|.|++..|......|.+|.|
T Consensus 86 ~~~I~iW~~~~~~dq~gl~~~l~~L~~~~~~I~~v~~ 122 (124)
T PF08874_consen 86 DDPIVIWYGDNAYDQLGLRYLLSLLKDKPNRIYVVNV 122 (124)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4599999999999999999999999765667888876
No 56
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=22.07 E-value=2e+02 Score=20.13 Aligned_cols=32 Identities=9% Similarity=0.028 Sum_probs=24.6
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEE
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIF 142 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LV 142 (199)
++|+++.|.++..+.|.+=..+.|.+.|-.+.
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVR 75 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 68999999999998888766677765554443
No 57
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=21.80 E-value=42 Score=31.83 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=4.2
Q ss_pred hhhhhhhhhh
Q 029072 50 EIEEEEEEEE 59 (199)
Q Consensus 50 ~~~~~~~~~~ 59 (199)
+.|+|.|+.|
T Consensus 365 s~e~e~d~~G 374 (407)
T KOG2130|consen 365 SDEEESDDNG 374 (407)
T ss_pred CccccccccC
Confidence 3344444443
No 58
>PRK00074 guaA GMP synthase; Reviewed
Probab=21.80 E-value=1.6e+02 Score=28.49 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=29.9
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
..+|+||+-+...|.-++..+.+-+ |..++.||+...
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~g 251 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHG 251 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeCC
Confidence 4799999999999998887776644 578999999654
No 59
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=20.62 E-value=4.6e+02 Score=23.88 Aligned_cols=76 Identities=8% Similarity=0.129 Sum_probs=42.1
Q ss_pred cchhccCCC-CCCCCCchhhhhhhcccccccccCCCCCCCCCEEEEEeCC----CcchHHHHHHHHHhccCCCCeEEEEE
Q 029072 71 LLSEINDGN-GMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGK----SQSSMDALSWTLRHAVNPSTLIFLIH 145 (199)
Q Consensus 71 ~~~e~~~~~-~~~~~~~~~~e~~e~~~~s~~~~~~~~~~~erkV~VAVD~----Se~Sk~ALkWALdNLv~~gd~LVLVH 145 (199)
+++.|.+++ +-.-..+.|||.++.- +..- ....+||+| ||. ...+..||.=+|+.- ++..++|+-
T Consensus 73 D~~~i~~~~~~~~i~id~iR~l~~~~--~~~~-----~~~~~kv~i-I~~a~~m~~~aaNaLLK~LEEP--p~~~~fiL~ 142 (328)
T PRK05707 73 DNFVLEPEEADKTIKVDQVRELVSFV--VQTA-----QLGGRKVVL-IEPAEAMNRNAANALLKSLEEP--SGDTVLLLI 142 (328)
T ss_pred CEEEEeccCCCCCCCHHHHHHHHHHH--hhcc-----ccCCCeEEE-ECChhhCCHHHHHHHHHHHhCC--CCCeEEEEE
Confidence 466666532 1234578899976631 2211 123578886 566 555556655555543 556666666
Q ss_pred ecCCCCccCCC
Q 029072 146 VFPQVKFVPSP 156 (199)
Q Consensus 146 V~pp~~~Iptp 156 (199)
...+....|+.
T Consensus 143 t~~~~~ll~TI 153 (328)
T PRK05707 143 SHQPSRLLPTI 153 (328)
T ss_pred ECChhhCcHHH
Confidence 66665555553
No 60
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=20.16 E-value=1.5e+02 Score=20.11 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=21.1
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhcc
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAV 135 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv 135 (199)
.+|++|.|.++.++.+-.+..+.+.
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 5799999999999998888777663
No 61
>PRK10922 3-octaprenyl-4-hydroxybenzoate decarboxylase; Provisional
Probab=20.04 E-value=1.4e+02 Score=28.82 Aligned_cols=37 Identities=8% Similarity=0.280 Sum_probs=29.5
Q ss_pred CEEEEEeCC--CcchHHHHHHHHHhccCCCCeEEEEEec
Q 029072 111 DIIYVAVGK--SQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 111 rkV~VAVD~--Se~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
-|.+|.||. .-...+.+.||+.+=+.+...+++++-.
T Consensus 395 ~K~vVvVDeDVD~~d~~~V~WAiatR~dP~rDi~ii~~~ 433 (497)
T PRK10922 395 TKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENT 433 (497)
T ss_pred ccEEEEECCCCCCCCHHHHHHHHHHcCCCcCCeEEECCC
Confidence 478899988 6788999999999888777666665543
No 62
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=20.02 E-value=26 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 122 SSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 122 ~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
+-.|+|+|+++|=+ .||+|-|++..
T Consensus 24 ~d~y~lkw~~~Ne~----~LvfVvvYq~i 48 (279)
T PF04086_consen 24 YDNYTLKWTLDNEL----GLVFVVVYQKI 48 (279)
T ss_dssp ----EEEEEEETTT----TEEEEEEES-G
T ss_pred EcCEEEEEEEeccC----CEEEeeeeccc
Confidence 44899999998764 68888898865
Done!