Query 029072
Match_columns 199
No_of_seqs 121 out of 419
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 98.6 7.2E-08 2.4E-12 71.8 7.5 79 110-197 5-83 (146)
2 3idf_A USP-like protein; unive 98.6 1.5E-07 5.1E-12 69.6 8.6 77 111-197 2-80 (138)
3 1mjh_A Protein (ATP-binding do 98.6 2.5E-07 8.7E-12 70.3 9.5 85 110-197 5-97 (162)
4 3hgm_A Universal stress protei 98.6 1.5E-08 5.2E-13 75.4 2.1 82 111-197 3-84 (147)
5 2gm3_A Unknown protein; AT3G01 98.4 6.6E-07 2.2E-11 69.2 7.8 85 110-197 5-101 (175)
6 3fg9_A Protein of universal st 98.4 6.7E-07 2.3E-11 67.7 7.5 77 110-197 15-93 (156)
7 2dum_A Hypothetical protein PH 98.4 1.6E-06 5.3E-11 66.6 8.5 87 110-197 5-92 (170)
8 3fdx_A Putative filament prote 98.3 6.7E-07 2.3E-11 66.2 5.3 40 111-150 2-43 (143)
9 3tnj_A Universal stress protei 98.3 1.9E-06 6.6E-11 64.4 7.6 41 110-150 6-46 (150)
10 1tq8_A Hypothetical protein RV 98.2 1.8E-06 6.1E-11 67.1 5.4 77 110-197 17-95 (163)
11 3dlo_A Universal stress protei 98.1 6.2E-06 2.1E-10 63.5 7.1 68 110-197 24-92 (155)
12 3loq_A Universal stress protei 98.1 4.4E-06 1.5E-10 69.5 6.4 79 110-197 22-100 (294)
13 3olq_A Universal stress protei 98.0 1.6E-05 5.4E-10 66.4 8.6 81 110-197 7-87 (319)
14 3cis_A Uncharacterized protein 98.0 1.6E-05 5.4E-10 66.8 7.9 76 110-195 19-94 (309)
15 2z08_A Universal stress protei 98.0 1.1E-05 3.7E-10 59.7 5.8 40 111-150 3-42 (137)
16 3ab8_A Putative uncharacterize 98.0 5.1E-06 1.8E-10 67.9 4.4 86 111-197 1-88 (268)
17 1jmv_A USPA, universal stress 97.9 6.7E-06 2.3E-10 60.8 3.9 39 111-149 3-41 (141)
18 1q77_A Hypothetical protein AQ 97.7 3.6E-05 1.2E-09 56.8 5.2 39 110-148 4-43 (138)
19 3mt0_A Uncharacterized protein 97.4 0.00049 1.7E-08 57.1 8.1 42 109-150 133-181 (290)
20 3mt0_A Uncharacterized protein 97.3 0.00016 5.3E-09 60.1 3.7 39 110-148 7-45 (290)
21 3olq_A Universal stress protei 97.2 0.00097 3.3E-08 55.5 7.6 76 109-191 155-239 (319)
22 3cis_A Uncharacterized protein 97.2 0.00054 1.9E-08 57.4 5.9 41 110-150 171-211 (309)
23 3loq_A Universal stress protei 97.0 0.001 3.4E-08 55.2 5.7 42 109-150 169-210 (294)
24 3ab8_A Putative uncharacterize 96.9 0.0014 4.7E-08 53.4 5.8 41 109-149 153-193 (268)
25 1ni5_A Putative cell cycle pro 66.1 8.7 0.0003 34.5 5.6 40 110-149 13-53 (433)
26 1wy5_A TILS, hypothetical UPF0 64.5 9.9 0.00034 32.4 5.4 41 110-150 24-65 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 61.2 7.6 0.00026 35.2 4.3 41 110-150 18-58 (464)
28 1k92_A Argininosuccinate synth 48.6 22 0.00076 32.9 5.2 36 110-149 10-45 (455)
29 3bl5_A Queuosine biosynthesis 47.7 31 0.0011 26.7 5.3 35 111-149 4-38 (219)
30 1kor_A Argininosuccinate synth 46.6 23 0.00078 31.8 4.9 36 111-149 1-36 (400)
31 2pg3_A Queuosine biosynthesis 42.1 34 0.0012 27.2 4.9 35 111-149 3-37 (232)
32 3k32_A Uncharacterized protein 42.0 30 0.001 27.5 4.5 36 111-150 7-42 (203)
33 1sur_A PAPS reductase; assimil 39.7 34 0.0011 27.0 4.4 36 111-150 45-80 (215)
34 2c5s_A THII, probable thiamine 36.5 39 0.0013 30.0 4.8 35 110-148 187-221 (413)
35 2nz2_A Argininosuccinate synth 32.7 40 0.0014 30.4 4.2 36 110-149 5-40 (413)
36 2ywb_A GMP synthase [glutamine 28.8 80 0.0027 28.7 5.6 35 111-149 210-244 (503)
37 2x9q_A Cyclodipeptide syntheta 28.1 45 0.0015 29.4 3.6 36 110-149 80-121 (289)
38 2der_A TRNA-specific 2-thiouri 27.8 72 0.0025 28.2 4.9 35 110-148 17-51 (380)
39 2dpl_A GMP synthetase, GMP syn 27.5 53 0.0018 28.0 3.9 36 111-149 21-56 (308)
40 2hma_A Probable tRNA (5-methyl 23.1 96 0.0033 27.3 4.8 36 110-149 9-44 (376)
41 2buf_A Acetylglutamate kinase; 22.9 89 0.003 26.4 4.4 37 111-147 27-67 (300)
42 1zun_A Sulfate adenylyltransfe 22.7 64 0.0022 27.9 3.6 39 112-150 48-86 (325)
43 2e18_A NH(3)-dependent NAD(+) 22.0 75 0.0025 25.9 3.7 37 111-149 23-59 (257)
44 3p52_A NH(3)-dependent NAD(+) 21.5 1.1E+02 0.0037 25.3 4.6 36 110-148 26-61 (249)
45 3tqi_A GMP synthase [glutamine 20.1 83 0.0028 28.9 3.9 36 111-149 231-266 (527)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.65 E-value=7.2e-08 Score=71.80 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=61.4
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~ 189 (199)
.++|+||||+|+.|.+||+||++-..+.+..|.|+||.++...... + .......+.++.++.+++.|+++.
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~~ 75 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQRQ 75 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999877666889999999876522110 0 011444566778888999999999
Q ss_pred HHhhhCCC
Q 029072 190 DTCSQSKV 197 (199)
Q Consensus 190 ~iC~~kkV 197 (199)
..|.+.++
T Consensus 76 ~~~~~~g~ 83 (146)
T 3s3t_A 76 QFVATTSA 83 (146)
T ss_dssp HHHTTSSC
T ss_pred HHHHhcCC
Confidence 99987765
No 2
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.62 E-value=1.5e-07 Score=69.62 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=58.3
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhc-cCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHHHH
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHA-VNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQET-GKRRQLLQKF 188 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNL-v~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer-~eakeLLdky 188 (199)
++|+||+|+|+.|.+||+||++.. .+.+..|.|+||.++...... .......+.+..+ +++++.|+++
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE----------AVLAAYDEIEMKEEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc----------cccCcHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 778899999999876521110 0011223445555 8888999999
Q ss_pred HHHhhhCCC
Q 029072 189 LDTCSQSKV 197 (199)
Q Consensus 189 ~~iC~~kkV 197 (199)
...|.+.++
T Consensus 72 ~~~~~~~g~ 80 (138)
T 3idf_A 72 STFFTEKGI 80 (138)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHCCC
Confidence 999987665
No 3
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.60 E-value=2.5e-07 Score=70.30 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC-----CccCCCCCC--C-CCCCCChHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV-----KFVPSPLGK--L-PRNQVNPEQLETFMAQETGKR 181 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~-----~~Iptp~G~--i-P~s~~~~e~vea~~~qer~ea 181 (199)
.++|+||||+|+.|.+||+||++...+.+..|.|+||.++. ......... + |. ..+.+..+..+.++++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEEA 81 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHHH
Confidence 46999999999999999999998776678899999998753 111100000 1 11 1112445667777888
Q ss_pred HHHHHHHHHHhhhCCC
Q 029072 182 RQLLQKFLDTCSQSKV 197 (199)
Q Consensus 182 keLLdky~~iC~~kkV 197 (199)
++.|+++.+.|...++
T Consensus 82 ~~~l~~~~~~~~~~g~ 97 (162)
T 1mjh_A 82 KNKMENIKKELEDVGF 97 (162)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999998877664
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.58 E-value=1.5e-08 Score=75.36 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~~ 190 (199)
++|+||||+|+.|.+||+||++...+.+..|.|+||.++........+..+. .....+.+..++.+++.|+++.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARP-----EQLDIPDDALKDYATEIAVQAKT 77 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCC-----GGGCCCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccCh-----hhhhhHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999776668899999999865311111111111 11112344566778888888888
Q ss_pred HhhhCCC
Q 029072 191 TCSQSKV 197 (199)
Q Consensus 191 iC~~kkV 197 (199)
.|.+.++
T Consensus 78 ~~~~~g~ 84 (147)
T 3hgm_A 78 RATELGV 84 (147)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8887765
No 5
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.42 E-value=6.6e-07 Score=69.17 Aligned_cols=85 Identities=26% Similarity=0.346 Sum_probs=55.9
Q ss_pred CCEEEEEeCCCc---------chHHHHHHHHHhccC---CCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQ---------SSMDALSWTLRHAVN---PSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQE 177 (199)
Q Consensus 110 erkV~VAVD~Se---------~Sk~ALkWALdNLv~---~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qe 177 (199)
.++|+||||+|+ .|++||+||++.+.+ .+..|+||||.++........+. . ...++.+..+.++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 81 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDS--I-YASPEDFRDMRQSN 81 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------C--C-CCSHHHHHHHTTSH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccccccc--c-cCCHHHHHHHHHHH
Confidence 479999999999 999999999998854 36799999998643110000000 0 11234444555556
Q ss_pred HHHHHHHHHHHHHHhhhCCC
Q 029072 178 TGKRRQLLQKFLDTCSQSKV 197 (199)
Q Consensus 178 r~eakeLLdky~~iC~~kkV 197 (199)
+++.+++|+++...|...++
T Consensus 82 ~~~~~~~l~~~~~~~~~~g~ 101 (175)
T 2gm3_A 82 KAKGLHLLEFFVNKCHEIGV 101 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 66778888888888766554
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.41 E-value=6.7e-07 Score=67.72 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=57.2
Q ss_pred CCEEEEEeC--CCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVG--KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (199)
Q Consensus 110 erkV~VAVD--~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdk 187 (199)
-++|+|||| +|+.|.+||+||++-..+.+..|.|+||.++.... .. +. . . ..+..+.++++++.|++
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~-~~-----~-~---~~~~~~~~~~~~~~l~~ 83 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDIN-IF-DS-----L-T---PSKIQAKRKHVEDVVAE 83 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTT-CC-CS-----S-H---HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcc-cc-cc-----C-C---HHHHHHHHHHHHHHHHH
Confidence 479999999 99999999999998776567899999998765321 11 11 1 1 23556677788889999
Q ss_pred HHHHhhhCCC
Q 029072 188 FLDTCSQSKV 197 (199)
Q Consensus 188 y~~iC~~kkV 197 (199)
+.+.+.+.++
T Consensus 84 ~~~~~~~~g~ 93 (156)
T 3fg9_A 84 YVQLAEQRGV 93 (156)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHcCC
Confidence 9888877665
No 7
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.36 E-value=1.6e-06 Score=66.57 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=54.6
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNP-EQLETFMAQETGKRRQLLQKF 188 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~-e~vea~~~qer~eakeLLdky 188 (199)
-++|+||||+++.|.+||+||++-..+.+..|+||||.++...... ...++.....+ .....+.++.++++++.|+++
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEEL-MDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCC-C------------CCTTSHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-ccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999888777889999999875421111 00111000000 000123345566677788888
Q ss_pred HHHhhhCCC
Q 029072 189 LDTCSQSKV 197 (199)
Q Consensus 189 ~~iC~~kkV 197 (199)
.+.|...++
T Consensus 84 ~~~~~~~g~ 92 (170)
T 2dum_A 84 AEEVKRAFR 92 (170)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHcCC
Confidence 877765543
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.31 E-value=6.7e-07 Score=66.23 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=35.4
Q ss_pred CEEEEEeCCCcc--hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~--Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
++|+||||+|+. |.+||+||++-..+.+..|.|+||.++.
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 43 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSL 43 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCC
Confidence 689999999999 9999999988766567899999999875
No 9
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.30 E-value=1.9e-06 Score=64.40 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.++|+||||+|+.|.+||+||++-..+.+..|.|+||.++.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 46 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNI 46 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCc
Confidence 47999999999999999999999776668899999998765
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.19 E-value=1.8e-06 Score=67.07 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEE--EecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI--HVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLV--HV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdk 187 (199)
.++|+||||+|+.|.+||+||++... .+..|.|| ||.++.... .+ .+. . ...+.++.++.+++.|++
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~---~~-~~~---~---~~~~~~~~~~~~~~~l~~ 85 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR---AA-DIL---K---DESYKVTGTAPIYEILHD 85 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------CCTHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccc---cc-ccc---c---cHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999887 78899999 776544210 01 000 0 112334455667788888
Q ss_pred HHHHhhhCCC
Q 029072 188 FLDTCSQSKV 197 (199)
Q Consensus 188 y~~iC~~kkV 197 (199)
+.+.|...++
T Consensus 86 ~~~~~~~~gv 95 (163)
T 1tq8_A 86 AKERAHNAGA 95 (163)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHcCC
Confidence 8888876655
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.11 E-value=6.2e-06 Score=63.49 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCEEEEEeCC-CcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGK-SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (199)
Q Consensus 110 erkV~VAVD~-Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky 188 (199)
.++|+||||+ |+.+.+||+||++-....+..|.||||.++.. +. . ...++++++.|+++
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~---------~~---~--------~~~~~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGG---------RT---K--------DEDIIEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCST---------TS---C--------HHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCC---------cc---c--------HHHHHHHHHHHHHH
Confidence 4799999999 99999999999987765678999999987531 01 1 23445567777777
Q ss_pred HHHhhhCCC
Q 029072 189 LDTCSQSKV 197 (199)
Q Consensus 189 ~~iC~~kkV 197 (199)
.+.+.+.++
T Consensus 84 ~~~~~~~g~ 92 (155)
T 3dlo_A 84 VSIIRKEGA 92 (155)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 777766554
No 12
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.10 E-value=4.4e-06 Score=69.54 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=56.8
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~ 189 (199)
.++|+||||+|+.+..||+||++-..+.+..|+|+||.++........+. ....+....++.+++.|+++.
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~ 92 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGI---------DIDHYIDEMSEKAEEVLPEVA 92 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CC---------CTTHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccc---------cHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999776778899999998765322111111 111234556677888889998
Q ss_pred HHhhhCCC
Q 029072 190 DTCSQSKV 197 (199)
Q Consensus 190 ~iC~~kkV 197 (199)
+.|.+.++
T Consensus 93 ~~~~~~g~ 100 (294)
T 3loq_A 93 QKIEAAGI 100 (294)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 88887664
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.04 E-value=1.6e-05 Score=66.44 Aligned_cols=81 Identities=7% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~ 189 (199)
.++|+|++|+|+.+..||+||+.-..+.+..|+|+||.++..... .+. +.......+.+...+++++.|+++.
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM--TTL-----LSPDERNAMRKGVINQKTAWIKQQA 79 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC--TTT-----SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh--ccc-----cChhhHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999987665678999999976532211 111 2244555566667777888888888
Q ss_pred HHhhhCCC
Q 029072 190 DTCSQSKV 197 (199)
Q Consensus 190 ~iC~~kkV 197 (199)
..|...+|
T Consensus 80 ~~~~~~~v 87 (319)
T 3olq_A 80 RYYLEAGI 87 (319)
T ss_dssp HHHHHTTC
T ss_pred HHHhhcCC
Confidence 88876654
No 14
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.99 E-value=1.6e-05 Score=66.78 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~eakeLLdky~ 189 (199)
.++|+||+|+|+.+..||+||++-..+.+..|+|+||.++. ....+.+. ...+ +....++.++++|+++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~-~~~~~~~~-----~~~~----~~~~~~~~~~~~l~~~~ 88 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPE-VATWLEVP-----LPPG----VLRWQQDHGRHLIDDAL 88 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCC-CCCTTCCC-----CCHH----HHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCc-ccccccCC-----CCch----hhHHHHHHHHHHHHHHH
Confidence 47999999999999999999998876667899999998743 22111111 1122 33445566677788877
Q ss_pred HHhhhC
Q 029072 190 DTCSQS 195 (199)
Q Consensus 190 ~iC~~k 195 (199)
+.|.+.
T Consensus 89 ~~~~~~ 94 (309)
T 3cis_A 89 KVVEQA 94 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777653
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.98 E-value=1.1e-05 Score=59.68 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=35.2
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
++|+||+|+|+.|.+||+||++...+.+..|.|+||.++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 42 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPV 42 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCC
Confidence 5899999999999999999998776567899999998753
No 16
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.97 E-value=5.1e-06 Score=67.92 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=55.7
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCCCcc-CCCCCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHH
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFV-PSPLGKLPRNQVNPEQL-ETFMAQETGKRRQLLQKF 188 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~~~I-ptp~G~iP~s~~~~e~v-ea~~~qer~eakeLLdky 188 (199)
++|+||+|+|+.|.+||+||++-..+.+..|+|+||.++.... ....+ .+.....-..+ +.+.+..++.++++|+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLD-FGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998776567899999998653210 00011 11000000011 112455667788899999
Q ss_pred HHHhhhCCC
Q 029072 189 LDTCSQSKV 197 (199)
Q Consensus 189 ~~iC~~kkV 197 (199)
...|.+.++
T Consensus 80 ~~~~~~~g~ 88 (268)
T 3ab8_A 80 RQSALAAGV 88 (268)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 999887664
No 17
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.93 E-value=6.7e-06 Score=60.81 Aligned_cols=39 Identities=28% Similarity=0.153 Sum_probs=34.9
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
++|+||+|+|+.+.+||+||++-..+.+..|.|+||.++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 41 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVN 41 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEEC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecC
Confidence 589999999999999999999877666789999999854
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.74 E-value=3.6e-05 Score=56.76 Aligned_cols=39 Identities=8% Similarity=0.180 Sum_probs=35.6
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEec-C
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF-P 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~-p 148 (199)
-++|+||+|+|+.|.+||+||++...+.+..|.|+||. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 46999999999999999999998887678899999998 5
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.40 E-value=0.00049 Score=57.13 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCCEEEEEeCCCcc-------hHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 109 EEDIIYVAVGKSQS-------SMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 109 ~erkV~VAVD~Se~-------Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
..++|+||+|+|+. |.+||+||++-....+..|.|+||.++.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 181 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSP 181 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCc
Confidence 45899999999998 9999999998876668899999998764
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.27 E-value=0.00016 Score=60.14 Aligned_cols=39 Identities=18% Similarity=-0.019 Sum_probs=35.1
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
.++|+|++|+|+.+..||+||+.-..+.+..|+|+||.+
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~ 45 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEK 45 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECS
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeC
Confidence 479999999999999999999997766677999999986
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.19 E-value=0.00097 Score=55.52 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCCEEEEEeCCCc-------chHHHHHHHHHhccCC--CCeEEEEEecCCCCccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 029072 109 EEDIIYVAVGKSQ-------SSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETG 179 (199)
Q Consensus 109 ~erkV~VAVD~Se-------~Sk~ALkWALdNLv~~--gd~LVLVHV~pp~~~Iptp~G~iP~s~~~~e~vea~~~qer~ 179 (199)
..++|+||+|++. .|.+||+||++-.... +..|.||||.++..... ...+|. .....+.++.++
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~~-----~~~~~~~~~~~~ 227 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELPD-----FDPNLYNNALRG 227 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCTT-----CCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCCc-----ccHHHHHHHHHH
Confidence 4589999999988 5799999998866433 88999999987652211 111121 123344555566
Q ss_pred HHHHHHHHHHHH
Q 029072 180 KRRQLLQKFLDT 191 (199)
Q Consensus 180 eakeLLdky~~i 191 (199)
+.++.|..+.+.
T Consensus 228 ~~~~~l~~~~~~ 239 (319)
T 3olq_A 228 QHLIAMKELRQK 239 (319)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.17 E-value=0.00054 Score=57.35 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.++|+||+|+++.+.+||+||++-....+..|.||||.++.
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 211 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDV 211 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSS
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecc
Confidence 57899999999999999999998776567899999998754
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.98 E-value=0.001 Score=55.21 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=36.7
Q ss_pred CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
..++|+||+|+++.+.+||+||++-....+..|.|+||.++.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 210 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG 210 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCc
Confidence 458999999999999999999998765567899999998754
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=96.90 E-value=0.0014 Score=53.40 Aligned_cols=41 Identities=17% Similarity=0.049 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 109 ~erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
..++|+||+|+++.+.+||+||.+-....+..|.|+||.++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~ 193 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHED 193 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCc
Confidence 35799999999999999999998755445667999999754
No 25
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=66.13 E-value=8.7 Score=34.54 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccC-CCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVN-PSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~-~gd~LVLVHV~pp 149 (199)
.++|+||+-|+..|.-+|.++.+-..+ .+..|+.+||...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 358999999999999666555443223 5678999999754
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=64.52 E-value=9.9 Score=32.39 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=29.6
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCe-EEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTL-IFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~-LVLVHV~pp~ 150 (199)
..+|+||+-|+..|.-+|.++.+.....+.. |+.+||....
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~ 65 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHML 65 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCS
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCC
Confidence 4699999999999997775554432233556 9999997543
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=61.20 E-value=7.6 Score=35.16 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=30.4
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
..+|+|||-|+..|.-+|.++.+-..+.+..|+.+||....
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhgl 58 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMF 58 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence 35899999999999977765544322346789999997543
No 28
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=48.59 E-value=22 Score=32.85 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
..||+||+-+...|..+|.|+.+. |..|+.+|+.-.
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 469999999999999999999774 678999999644
No 29
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=47.68 E-value=31 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.7
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
++|+||+-+...|..++.|+.+.. ..|+.+|+...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~~----~~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKEF----EEVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHcC----CceEEEEEeCC
Confidence 589999999999999888876643 57888898654
No 30
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=46.59 E-value=23 Score=31.84 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=30.3
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-+...|..+|.|+.+.+ +..++.+|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~---g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY---RAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH---TCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh---CCcEEEEEEeCC
Confidence 379999999999999999998875 357888999654
No 31
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=42.07 E-value=34 Score=27.25 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=29.3
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+|++-+...|.-+|.|+.+.. ..|+.||+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----DDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----SEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----CCEEEEEEECC
Confidence 489999999999999999988764 47888888643
No 32
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=42.04 E-value=30 Score=27.47 Aligned_cols=36 Identities=14% Similarity=-0.107 Sum_probs=28.0
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.+|+||+-+...|..++.|+.+ .|..++.+|+....
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 5899999999999988866543 25678999997543
No 33
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=39.74 E-value=34 Score=27.03 Aligned_cols=36 Identities=8% Similarity=-0.141 Sum_probs=27.3
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
.+|+||+-+.+.|.-.|..+.+.. ..|.+||+....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~ 80 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGY 80 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCC
Confidence 489999999999997776555543 358889997653
No 34
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=36.51 E-value=39 Score=30.05 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=29.4
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
..+|+||+-|...|.-|+.|+.+ .|..++.||+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 57899999999999988877765 267899999975
No 35
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=32.69 E-value=40 Score=30.40 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=30.4
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
..+|+||+-+...|.-++.|+.+. |..|+.+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 368999999999999999998774 568888999654
No 36
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=28.81 E-value=80 Score=28.75 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=29.8
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-+...|.-++.++.+. |..|+.||+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCC
Confidence 69999999999999888877664 688999999754
No 37
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=28.15 E-value=45 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=25.7
Q ss_pred CCEEEEEeCC--Ccch----HHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGK--SQSS----MDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~--Se~S----k~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+.|+|+|-- |.-| ...++||..|| +.|-++|.-..
T Consensus 80 ~~HaliGISPfNSyFS~dri~~Li~Wa~~~F----~~VdVl~~d~~ 121 (289)
T 2x9q_A 80 GDHAVIGVSPGNSYFSRQRLRDLGLWGLTNF----DRVDFVYTDVH 121 (289)
T ss_dssp TCEEEEEECTTCTTSCHHHHHHHHHHHHHHC----SEEEEEECCSS
T ss_pred CCeEEEEECCCCCccCHHHHHHHHHHHHhcC----CeeEEEecChH
Confidence 3578888876 5444 35678999999 57888886544
No 38
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=27.78 E-value=72 Score=28.24 Aligned_cols=35 Identities=6% Similarity=-0.102 Sum_probs=28.5
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
..+|+||+-+...|.-|+.++.+ .|..|+.||+..
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~ 51 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKN 51 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEc
Confidence 56999999999999988876654 267899999963
No 39
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=27.49 E-value=53 Score=28.02 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=29.2
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+||+-|...|.-++.++.+.+ |..|+.||+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~---g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAI---GDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHhh---CCCEEEEEEcCC
Confidence 589999999999998888877654 457888899654
No 40
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=23.13 E-value=96 Score=27.30 Aligned_cols=36 Identities=8% Similarity=-0.085 Sum_probs=29.0
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.++|+||+-+...|.-|+.++.+. |..|+.||+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~----G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQ----GYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHc----CCcEEEEEEECC
Confidence 469999999999999888776543 678999999643
No 41
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=22.89 E-value=89 Score=26.35 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=25.6
Q ss_pred CEEEEEeCCCc----chHHHHHHHHHhccCCCCeEEEEEec
Q 029072 111 DIIYVAVGKSQ----SSMDALSWTLRHAVNPSTLIFLIHVF 147 (199)
Q Consensus 111 rkV~VAVD~Se----~Sk~ALkWALdNLv~~gd~LVLVHV~ 147 (199)
++|+|.++++- .-...+...+..+...|.+++|||=-
T Consensus 27 k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg 67 (300)
T 2buf_A 27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG 67 (300)
T ss_dssp CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 68999999943 22344444455555678899999975
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=22.71 E-value=64 Score=27.88 Aligned_cols=39 Identities=10% Similarity=-0.066 Sum_probs=29.7
Q ss_pred EEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCCC
Q 029072 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (199)
Q Consensus 112 kV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp~ 150 (199)
+|+||+-+.+.|.-.|..+.+-+...+..|.+||+....
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~ 86 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCC
Confidence 789999999999977777766654334578889997554
No 43
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=21.97 E-value=75 Score=25.87 Aligned_cols=37 Identities=3% Similarity=-0.064 Sum_probs=29.6
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
.+|+|++-|...|.-++.|+.+.+ +...|+.||+...
T Consensus 23 ~~vvv~lSGGiDSs~~~~l~~~~~--g~~~v~av~~~~~ 59 (257)
T 2e18_A 23 NGVVIGISGGVDSATVAYLATKAL--GKEKVLGLIMPYF 59 (257)
T ss_dssp TCEEEECCSSHHHHHHHHHHHHHH--CGGGEEEEECCSS
T ss_pred CcEEEEecCCHHHHHHHHHHHHhc--CCCcEEEEEeCCC
Confidence 589999999999999999988765 2246888888543
No 44
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=21.52 E-value=1.1e+02 Score=25.31 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecC
Q 029072 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (199)
Q Consensus 110 erkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~p 148 (199)
..+|+||+.|...|.-++.++.+.+ |..++.||+..
T Consensus 26 ~~~vvv~lSGGiDSsv~a~l~~~~~---g~~v~av~~~~ 61 (249)
T 3p52_A 26 SQGVVLGLSGGIDSALVATLCKRAL---KENVFALLMPT 61 (249)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHH---TTSEEEEECCS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHc---CCcEEEEEecC
Confidence 4689999999999999988887765 36788888854
No 45
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=20.12 E-value=83 Score=28.94 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=30.0
Q ss_pred CEEEEEeCCCcchHHHHHHHHHhccCCCCeEEEEEecCC
Q 029072 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (199)
Q Consensus 111 rkV~VAVD~Se~Sk~ALkWALdNLv~~gd~LVLVHV~pp 149 (199)
++|+||+-+...|.-++.++.+.+ |..|+.|||...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~---G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAI---GDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHH---GGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHHh---CCeEEEEEeccC
Confidence 689999999999998888877654 467999999654
Done!