BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029074
MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP
HCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWL
DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM
SDGTAHRLGRRYDVRIHDD

High Scoring Gene Products

Symbol, full name Information P value
AT1G05970 protein from Arabidopsis thaliana 2.1e-45

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029074
        (199 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2198876 - symbol:AT1G05970 "AT1G05970" species...   477  2.1e-45   1


>TAIR|locus:2198876 [details] [associations]
            symbol:AT1G05970 "AT1G05970" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR012677 EMBL:CP002684 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC024174 EMBL:AK228454 IPI:IPI00657521
            PIR:G86194 RefSeq:NP_001030978.1 UniGene:At.42360
            ProteinModelPortal:Q9LNE8 SMR:Q9LNE8 EnsemblPlants:AT1G05970.2
            GeneID:837107 KEGG:ath:AT1G05970 TAIR:At1g05970
            HOGENOM:HOG000242998 OMA:FMVAGMP PhylomeDB:Q9LNE8
            ProtClustDB:CLSN2690730 Genevestigator:Q9LNE8 Uniprot:Q9LNE8
        Length = 200

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 90/195 (46%), Positives = 128/195 (65%)

Query:     1 MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60
             M +  E  Y  FLE+V+RTVY+D L+P  T PVI +A +QFG VK V FIPNY   + +P
Sbjct:     1 MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query:    61 HCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWL 120
                LVEMEN +  + V++++ + PFM++GMPRPVRA AAE  MF D P KPG+ ++F+W+
Sbjct:    61 MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query:   121 DPNDPDFEVAQRLKRLARKHAAEASFVXXXXXXXXXXXXXXXXXXXKQNYKKYETLEGIM 180
              PNDPDF+ A+R+KRLARKH+AE SF+                     ++KK+E ++ ++
Sbjct:   121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query:   181 SDGTAHRLGRRYDVR 195
              DG A +L  RYD++
Sbjct:   181 YDGVAQKLAGRYDLK 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       180   0.00092  109 3  11 22  0.41    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.73u 0.09s 15.82t   Elapsed:  00:00:02
  Total cpu time:  15.73u 0.09s 15.82t   Elapsed:  00:00:02
  Start:  Fri May 10 04:51:10 2013   End:  Fri May 10 04:51:12 2013

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