BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029074
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NLSP T IR+ Q+G + + N+ V M++ +A + + +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNF---------GFVHMDSKSEADEAIQN 54
Query: 80 LHEFPFMMSGMPRPVRARAAEVEMFDDHP 108
LH +M++GM A VEM P
Sbjct: 55 LHH--YMLNGM-------AMNVEMSKGKP 74
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 1 MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60
M +TE + V V++ L V E + AL++FG + V +P +
Sbjct: 108 MPLSTEGGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ----- 162
Query: 61 HCALVEMENLKQAKDVVTSLHEFPFMMSG 89
ALVE EN+ AK+ VT + P ++G
Sbjct: 163 --ALVEFENIDSAKECVTFAADVPVYIAG 189
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NL + TE IR+ +Q+G V I NY V +E+ A+D + +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY---------GFVHIEDKTAAEDAIRN 54
Query: 80 LHEF 83
LH +
Sbjct: 55 LHHY 58
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDV 76
KRT+Y+ L+ +VTE ++ A FG++ ++Q +Y R+ A +E E + A
Sbjct: 5 KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGF-AFIEYEQSEDAAAA 63
Query: 77 VTSLHEFPF----MMSGMPRPVRAR 97
+ ++++ + + +PVR +
Sbjct: 64 IDNMNDSELCGRTIRVNLAKPVRVK 88
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPH-----CALVEMENLK 71
+R VY+ NLS QV ++ + Q GNV N + + N+P+ CA++E +
Sbjct: 76 ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-------NLPNGLSKGCAIIEYSTAE 128
Query: 72 QAKDVVTSLHEFPFM 86
+A+ + +L FM
Sbjct: 129 EARTAIKTLSNQKFM 143
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
T+Y+ NLS + TE ++ +G VK V +P E + A VEM Q +T
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRV-VLPTDRETGRMRGFAFVEMNEDAQEDAAIT 60
Query: 79 SLHEFPFM 86
L +M
Sbjct: 61 ELDGAEWM 68
>sp|Q6G4W7|IF2_BARHE Translation initiation factor IF-2 OS=Bartonella henselae (strain
ATCC 49882 / Houston 1) GN=infB PE=3 SV=1
Length = 845
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 107 HPAKPGQRIQFQWLDPNDP-------DFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLA 159
H A R +F+ PN+P E+ RL+ L H E +++EQ E+E + A
Sbjct: 65 HVAPQRSRPRFEDAKPNEPTAKSNLSSAEIEARLRALEEAHIQER--IIREQAEEEARRA 122
Query: 160 NQQEETLKQNYKKYE 174
++EE+L+Q +K E
Sbjct: 123 KEREESLRQTIQKTE 137
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKD 75
V V++ L V E + AL++FG + V +P + ALVE EN+ AK+
Sbjct: 74 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ-------ALVEFENIDSAKE 126
Query: 76 VVTSLHEFPFMMSG 89
VT + P ++G
Sbjct: 127 CVTFAADEPVYIAG 140
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
VY+ NL P+VTE + FG V++V R P A ++ E+ + A+D + +
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA------RRPPGYAFLDFEDPRDARDAIRA 57
Query: 80 L 80
L
Sbjct: 58 L 58
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+++ NLSP+ E V+ FG V NV+ I ++T V M N +A +
Sbjct: 285 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT-NKCKGFGFVTMTNYDEAAMAIA 343
Query: 79 SLHEF 83
SL+ +
Sbjct: 344 SLNGY 348
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+++ NLSP+ E V+ FG V NV+ I ++T V M N +A +
Sbjct: 285 CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT-NKCKGFGFVTMTNYDEAAMAIA 343
Query: 79 SLHEF 83
SL+ +
Sbjct: 344 SLNGY 348
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis
thaliana GN=RSZ21 PE=1 SV=1
Length = 187
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
VY+ NL P+VTE + FG ++NV R P A +E ++ + A D +++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA------RRPPGYAFLEFDDERDALDAISA 57
Query: 80 L 80
L
Sbjct: 58 L 58
>sp|Q7N574|LUXB_PHOLL Alkanal monooxygenase beta chain OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=luxB PE=3 SV=1
Length = 324
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 89 GMPRPVRARAAEVEMFDDHPAKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEASFV 147
G PR R A + AK G + F+W D ND +E A+R K +A K+ + S +
Sbjct: 166 GGPR--RYVTATSHHIVEWAAKKGIPLIFKWDDSNDVRYEYAERYKAVADKYGIDLSAI 222
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NLSP+ E V+ FG V NV+ I ++T + V M N +A + S
Sbjct: 262 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK-CKGFGFVTMTNYDEAAMAIAS 320
Query: 80 LHEF 83
L+ +
Sbjct: 321 LNGY 324
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC 62
RT+Y+ NLS VTE +I Q G K+ + I +T N P+C
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYC 51
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
+++ NLSP+ E V+ FG V NV+ I ++T + V M N +A + S
Sbjct: 267 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK-CKGFGFVTMTNYDEAAMAIAS 325
Query: 80 LHEF 83
L+ +
Sbjct: 326 LNGY 329
>sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=seb1 PE=1 SV=3
Length = 620
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTE------FRNIPHCALVEMENLK 71
RT++L ++ V EPV+R+ ++FG+V+++ NY R+ A V MEN+
Sbjct: 406 RTLFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVP 465
Query: 72 QAKDVVTS 79
A + +
Sbjct: 466 FADTTIRT 473
>sp|Q0AF54|RPOC_NITEC DNA-directed RNA polymerase subunit beta' OS=Nitrosomonas eutropha
(strain C91) GN=rpoC PE=3 SV=1
Length = 1404
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 116 QFQWLDPNDPDFEVA--QRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQN 169
+ Q + ND EV Q L+R+ +A +++F+L EQ+E+ E LA + E+ + +N
Sbjct: 1254 RLQGVSINDKHIEVIVRQMLRRVQITNAGDSAFILGEQVERAEVLA-ENEKLITEN 1308
>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2
Length = 1742
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 25 LSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83
LS + + +++ A + G VK+V+ P +T+++ A+V+MENL++A V SLH +
Sbjct: 799 LSRKELQQLMQEAFSRHGKVKSVELSP-HTDYQ---LKAVVQMENLQEAIGAVNSLHRY 853
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP---HCALVEMENL 70
E T+++ + P V + +R QFG V +V+ IP C V+ +
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK----------IPVGKGCGFVQFADR 366
Query: 71 KQAKDVVTSLH 81
K A+D + SL+
Sbjct: 367 KSAEDAIESLN 377
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV 77
VY+ NL P+VTE + FG +++V R P A ++ E+ + A+D +
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA------RRPPGYAFLDFEDSRDARDAI 55
>sp|P19840|LUXB1_PHOLU Alkanal monooxygenase beta chain OS=Photorhabdus luminescens
GN=luxB PE=3 SV=1
Length = 327
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 109 AKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEAS 145
AK G + F+W D ND +E A+R K +A K+ + S
Sbjct: 184 AKKGIPLIFKWDDSNDVRYEYAERYKAVADKYDVDLS 220
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQF 49
+E+ K TV++ NL+P VTE ++ A FG + +V
Sbjct: 1 MERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVAL 37
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 24 NLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC-ALVEMENLKQAKDVVTSLHE 82
NLSP V+ ++ A QFG V+ I + R P +VE N A+ + +
Sbjct: 156 NLSPVVSNELLEQAFSQFGPVERAIVI---VDDRGRPTGKGIVEFANKPAARKALDHCAD 212
Query: 83 FPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQ------------WLDPNDPDFEVA 130
+++ PRPV E +DD P + +Q + P +FE +
Sbjct: 213 GALLLTTSPRPVILEP--TEQYDDEDGLPEKLLQKSAQYHKEREHKPHFAQPGTFEFEYS 270
Query: 131 QRLKRL------ARKHAAEASFVLKEQLEQEEQLANQQEETL 166
R K L R+ KE+LE E + A Q+ + +
Sbjct: 271 SRWKALDEMDKQQREQVERNIQEAKEKLETEMEAAKQEHQLM 312
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV 77
RTVY++ L VT I + GNV + IP+Y + A VE E +QA +
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNVVYIS-IPHYKSTGDPKGFAFVEFETKEQAAKAI 178
Query: 78 TSLHEFP 84
L+ P
Sbjct: 179 EFLNNPP 185
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC 62
+++ +T+Y+ NLS VTE +I Q G KN + I + N P+C
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTA--GNDPYC 49
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79
VY+ NL ++ I A ++G ++NV RN P A VE E+ + A+D +
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVA------RNPPGFAFVEFEDRRDAEDATRA 66
Query: 80 L 80
L
Sbjct: 67 L 67
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC 62
+++ +T+Y+ NLS VTE +I Q G KN + I + N P+C
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTA--GNDPYC 49
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV 77
RTVY++ L VT I + GNV + IP+Y + A VE E +QA +
Sbjct: 119 RTVYVELLPKNVTHSWIERVFGKCGNVVYIS-IPHYKSTGDPKGFAFVEFETKEQAAKAI 177
Query: 78 TSLHEFP 84
L+ P
Sbjct: 178 EFLNNPP 184
>sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens
GN=RERE PE=1 SV=2
Length = 1566
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 130 AQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIMSDGTAHRLG 189
A+ +K+ A+K EAS LK Q E++A+ EE + + KK +T E + + G
Sbjct: 626 AETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEG 685
Query: 190 RRYDVRIHDD 199
D R +D
Sbjct: 686 ESSDSRSVND 695
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+ + NLSP V+ ++ A QFG V+ + + VE A+ +
Sbjct: 157 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPARKALE 214
Query: 79 SLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQF------------QWLDPNDPD 126
+ F+++ PRPV +E FDD P + +Q ++ P +
Sbjct: 215 RCGDGAFLLTTTPRPVIVEP--MEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFE 272
Query: 127 FEVAQRLKRL 136
FE A R K L
Sbjct: 273 FEYASRWKAL 282
>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1
SV=6
Length = 1742
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 25 LSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83
LS + + +++ A + G VK+V+ P +T+++ A+V+MENL+ A V SLH +
Sbjct: 802 LSRKELQQLLQEAFARHGKVKSVELSP-HTDYQ---LKAVVQMENLQDAIGAVNSLHRY 856
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+ + NLSP V+ ++ A QFG V+ + + VE A+ +
Sbjct: 154 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPARKALE 211
Query: 79 SLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQF------------QWLDPNDPD 126
+ F+++ PRPV +E FDD P + +Q ++ P +
Sbjct: 212 RCGDGAFLLTTTPRPVIVEP--MEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFE 269
Query: 127 FEVAQRLKRL 136
FE A R K L
Sbjct: 270 FEYASRWKAL 279
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+ + NLSP V+ ++ A QFG V+ + + VE A+ +
Sbjct: 156 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPARKALE 213
Query: 79 SLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQF------------QWLDPNDPD 126
+ F+++ PRPV +E FDD P + +Q ++ P +
Sbjct: 214 RCGDGAFLLTTTPRPVIVEP--MEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFE 271
Query: 127 FEVAQRLKRL 136
FE A R K L
Sbjct: 272 FEYASRWKAL 281
>sp|Q5FMJ3|GPMA_LACAC 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56
/ N2 / NCFM) GN=gpmA PE=3 SV=1
Length = 230
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 119 WLDPN--DPDFEVAQRLKRLARKHAAE-----------ASFVLKEQLEQEEQLANQQEET 165
W+D N + E A++ RL ++H E A L LE+ +QL + +T
Sbjct: 23 WVDVNLSEKGVEEAKKAGRLIKEHGLEFDQAYTSLLTRAIKTLHYALEESDQLWIPETKT 82
Query: 166 LKQNYKKYETLEGIMSDGTAHRLG--------RRYDV 194
+ N + Y L+G+ TA + G R YDV
Sbjct: 83 WRLNERHYGALQGLNKKATAEKYGDEQVHIWRRSYDV 119
>sp|A9IMT5|IF2_BART1 Translation initiation factor IF-2 OS=Bartonella tribocorum (strain
CIP 105476 / IBS 506) GN=infB PE=3 SV=1
Length = 842
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 123 NDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLE 177
N E+ RL+ L H E + +EQ E+E +LA ++EE LKQ ++ E L+
Sbjct: 88 NLSSAEMEARLRALEEAHIQEK--ITREQAEKEARLAKEREEILKQEIQEQEILQ 140
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+ + NLSP V+ ++ A QFG V+ + + VE A+ +
Sbjct: 156 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV--VDDRGRATGKGFVEFAAKPPARKALE 213
Query: 79 SLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQF------------QWLDPNDPD 126
+ F+++ PRPV +E FDD P + +Q ++ P +
Sbjct: 214 RCGDGAFLLTTTPRPVIVEP--MEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFE 271
Query: 127 FEVAQRLKRL 136
FE A R K L
Sbjct: 272 FEYASRWKAL 281
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78
+ + NLSP V+ ++ A QFG V+ + + VE A+ +
Sbjct: 156 ALTVKNLSPVVSNELLEQAFSQFGPVERAVVV--VDDRGRATGKGFVEFAAKPPARKALE 213
Query: 79 SLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQF------------QWLDPNDPD 126
+ F+++ PRPV +E FDD P + +Q ++ P +
Sbjct: 214 RCSDGAFLLTTTPRPVVVEP--MEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFE 271
Query: 127 FEVAQRLKRL 136
FE A R K L
Sbjct: 272 FEYASRWKAL 281
>sp|Q74LL9|GPMA1_LACJO 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1
OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=gpmA1 PE=3 SV=1
Length = 230
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 119 WLDPN--DPDFEVAQRLKRLARKHAAE-----------ASFVLKEQLEQEEQLANQQEET 165
W+D N + E A++ RL ++H E A L LE+ +QL + +T
Sbjct: 23 WVDVNLSEKGVEEAKKAGRLIKEHGLEFDQAYTSLLTRAIKTLHYALEESDQLWIPETKT 82
Query: 166 LKQNYKKYETLEGIMSDGTAHRLG--------RRYDV 194
+ N + Y L+G+ TA + G R YDV
Sbjct: 83 WRLNERHYGALQGLNKKDTAEKYGDEQVHIWRRSYDV 119
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNV 47
++ RT++L NL VTE +R A D+FG + V
Sbjct: 370 QRANRTLFLGNLDITVTESDLRRAFDRFGVITEV 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,421,030
Number of Sequences: 539616
Number of extensions: 2817405
Number of successful extensions: 13102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 13000
Number of HSP's gapped (non-prelim): 188
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)