Query 029074
Match_columns 199
No_of_seqs 315 out of 1467
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 2.8E-18 6E-23 132.1 12.2 83 14-102 31-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.6E-17 1E-21 140.9 10.5 78 18-101 270-348 (352)
3 PF00076 RRM_1: RNA recognitio 99.7 7.8E-17 1.7E-21 107.4 7.7 70 20-95 1-70 (70)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-16 3.9E-21 137.2 10.2 80 17-102 3-83 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 4.1E-16 9E-21 135.6 10.4 82 15-102 105-187 (346)
6 KOG0111 Cyclophilin-type pepti 99.6 3.3E-16 7.2E-21 125.8 5.0 90 12-107 5-95 (298)
7 PLN03120 nucleic acid binding 99.6 5.1E-14 1.1E-18 116.9 16.4 76 17-101 4-79 (260)
8 KOG0121 Nuclear cap-binding pr 99.6 2.8E-15 6E-20 111.3 7.0 79 15-99 34-113 (153)
9 KOG0117 Heterogeneous nuclear 99.6 3.6E-15 7.9E-20 129.9 8.3 144 18-182 84-292 (506)
10 PF14259 RRM_6: RNA recognitio 99.6 8.1E-15 1.8E-19 98.4 8.3 70 20-95 1-70 (70)
11 KOG0149 Predicted RNA-binding 99.6 3.4E-15 7.4E-20 120.9 6.7 82 12-100 7-89 (247)
12 KOG0126 Predicted RNA-binding 99.6 3.6E-16 7.8E-21 122.2 0.6 77 17-99 35-112 (219)
13 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.4E-19 133.9 10.4 80 16-101 203-283 (612)
14 TIGR01659 sex-lethal sex-letha 99.6 1.4E-14 3E-19 126.1 10.5 82 16-101 192-274 (346)
15 PLN03213 repressor of silencin 99.6 1E-14 2.2E-19 128.7 9.5 79 14-101 7-87 (759)
16 KOG0122 Translation initiation 99.6 1.1E-14 2.4E-19 118.5 8.9 80 17-102 189-269 (270)
17 KOG0107 Alternative splicing f 99.6 9.8E-15 2.1E-19 113.5 7.8 76 16-101 9-84 (195)
18 TIGR01645 half-pint poly-U bin 99.6 1.3E-14 2.9E-19 133.4 10.1 78 16-99 106-184 (612)
19 KOG0144 RNA-binding protein CU 99.6 1.1E-14 2.4E-19 126.5 8.3 136 16-194 33-169 (510)
20 KOG0125 Ataxin 2-binding prote 99.6 9.2E-15 2E-19 123.2 7.6 80 17-103 96-175 (376)
21 KOG0144 RNA-binding protein CU 99.5 6E-15 1.3E-19 128.1 5.9 84 17-103 124-207 (510)
22 TIGR01628 PABP-1234 polyadenyl 99.5 3.9E-14 8.4E-19 130.3 10.2 76 19-100 2-78 (562)
23 TIGR01622 SF-CC1 splicing fact 99.5 5.1E-14 1.1E-18 126.1 10.4 78 17-100 186-264 (457)
24 KOG0148 Apoptosis-promoting RN 99.5 1.9E-14 4.1E-19 118.7 6.8 77 19-101 64-141 (321)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.5E-14 1.4E-18 127.0 10.6 79 17-101 295-374 (509)
26 smart00362 RRM_2 RNA recogniti 99.5 1E-13 2.2E-18 91.2 8.8 72 19-97 1-72 (72)
27 TIGR01628 PABP-1234 polyadenyl 99.5 6.8E-14 1.5E-18 128.7 10.8 81 15-101 283-363 (562)
28 COG0724 RNA-binding proteins ( 99.5 9.7E-14 2.1E-18 112.8 9.8 79 17-101 115-194 (306)
29 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.2E-18 124.2 10.3 81 14-101 86-167 (457)
30 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3E-18 126.4 11.1 79 16-99 57-135 (578)
31 KOG4207 Predicted splicing fac 99.5 4.2E-14 9.2E-19 112.7 6.5 78 18-101 14-92 (256)
32 KOG0114 Predicted RNA-binding 99.5 1.9E-13 4.1E-18 98.1 8.3 80 14-101 15-94 (124)
33 KOG0113 U1 small nuclear ribon 99.5 1.8E-13 3.9E-18 114.2 9.4 78 18-101 102-180 (335)
34 PLN03121 nucleic acid binding 99.5 2.3E-13 4.9E-18 111.5 9.8 75 17-100 5-79 (243)
35 KOG0131 Splicing factor 3b, su 99.5 5.8E-14 1.3E-18 109.9 5.7 80 15-100 7-87 (203)
36 KOG0105 Alternative splicing f 99.5 3.1E-13 6.8E-18 106.2 8.9 117 15-139 4-138 (241)
37 KOG0148 Apoptosis-promoting RN 99.5 2.5E-13 5.5E-18 112.1 8.6 77 14-101 161-237 (321)
38 smart00360 RRM RNA recognition 99.5 4.7E-13 1E-17 87.6 8.3 70 22-97 1-71 (71)
39 KOG0145 RNA-binding protein EL 99.5 2.5E-13 5.4E-18 111.8 8.1 82 16-103 40-122 (360)
40 KOG4208 Nucleolar RNA-binding 99.4 5.5E-13 1.2E-17 106.2 8.8 99 19-123 51-159 (214)
41 KOG0108 mRNA cleavage and poly 99.4 4.1E-13 8.9E-18 119.3 8.3 79 18-102 19-98 (435)
42 cd00590 RRM RRM (RNA recogniti 99.4 2.1E-12 4.6E-17 85.3 9.6 73 19-97 1-73 (74)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.1E-12 2.3E-17 119.0 9.9 75 17-102 2-78 (481)
44 KOG0130 RNA-binding protein RB 99.4 6.4E-13 1.4E-17 99.6 6.6 75 19-99 74-149 (170)
45 TIGR01648 hnRNP-R-Q heterogene 99.4 1.3E-12 2.7E-17 120.1 9.4 73 17-102 233-307 (578)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.9E-12 4.1E-17 117.3 10.3 77 16-102 274-351 (481)
47 KOG0145 RNA-binding protein EL 99.3 9.2E-12 2E-16 102.6 8.9 78 17-100 278-356 (360)
48 KOG0124 Polypyrimidine tract-b 99.3 2E-12 4.3E-17 110.8 4.8 76 17-98 113-189 (544)
49 KOG0127 Nucleolar protein fibr 99.3 1.1E-11 2.4E-16 110.6 8.4 79 17-101 117-195 (678)
50 PF13893 RRM_5: RNA recognitio 99.3 2.1E-11 4.5E-16 78.6 7.2 56 34-99 1-56 (56)
51 smart00361 RRM_1 RNA recogniti 99.3 2E-11 4.4E-16 82.4 7.4 60 31-96 2-69 (70)
52 KOG0146 RNA-binding protein ET 99.3 8.1E-12 1.8E-16 103.2 6.4 84 16-102 18-101 (371)
53 KOG0109 RNA-binding protein LA 99.2 8.6E-12 1.9E-16 104.0 5.4 71 18-101 3-73 (346)
54 KOG0147 Transcriptional coacti 99.2 1.1E-11 2.3E-16 110.7 6.1 74 20-99 281-355 (549)
55 KOG0127 Nucleolar protein fibr 99.2 4.9E-11 1.1E-15 106.6 8.5 78 18-101 293-377 (678)
56 KOG4206 Spliceosomal protein s 99.2 4.6E-11 1E-15 96.5 7.6 78 17-102 9-90 (221)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.2 5.1E-11 1.1E-15 108.1 8.3 74 14-99 172-257 (509)
58 KOG0123 Polyadenylate-binding 99.2 9.9E-11 2.1E-15 102.8 9.2 78 17-102 76-153 (369)
59 KOG0117 Heterogeneous nuclear 99.2 6.4E-11 1.4E-15 103.6 7.1 72 18-102 260-331 (506)
60 KOG1548 Transcription elongati 99.2 3.4E-11 7.4E-16 102.4 4.9 157 9-182 126-309 (382)
61 KOG0131 Splicing factor 3b, su 99.1 7E-11 1.5E-15 92.7 5.6 79 17-101 96-176 (203)
62 KOG0146 RNA-binding protein ET 99.1 1.4E-10 3.1E-15 95.9 6.0 81 15-101 283-364 (371)
63 KOG0415 Predicted peptidyl pro 99.1 1.2E-10 2.6E-15 99.6 5.5 77 18-100 240-317 (479)
64 KOG0132 RNA polymerase II C-te 99.1 2E-10 4.4E-15 106.0 6.9 80 11-101 415-494 (894)
65 KOG4212 RNA-binding protein hn 99.1 3.7E-10 7.9E-15 98.9 7.8 78 17-100 44-122 (608)
66 KOG0124 Polypyrimidine tract-b 99.0 8.1E-10 1.8E-14 94.9 7.8 78 18-100 211-288 (544)
67 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.5E-10 1.6E-14 99.6 7.1 83 15-102 403-485 (940)
68 KOG0123 Polyadenylate-binding 99.0 1.3E-09 2.7E-14 95.8 8.0 73 18-101 2-74 (369)
69 KOG4205 RNA-binding protein mu 99.0 5.6E-10 1.2E-14 95.6 5.7 86 16-108 5-91 (311)
70 KOG0109 RNA-binding protein LA 99.0 6.6E-10 1.4E-14 92.9 5.5 74 14-100 75-148 (346)
71 KOG0533 RRM motif-containing p 98.9 5E-09 1.1E-13 86.7 8.6 80 17-102 83-162 (243)
72 KOG0115 RNA-binding protein p5 98.9 5.5E-10 1.2E-14 91.8 1.3 134 18-172 32-175 (275)
73 KOG0153 Predicted RNA-binding 98.8 8.9E-09 1.9E-13 87.9 7.7 78 13-101 224-302 (377)
74 KOG0110 RNA-binding protein (R 98.8 3.3E-09 7.1E-14 97.4 4.8 79 18-101 614-692 (725)
75 KOG4205 RNA-binding protein mu 98.8 5.4E-09 1.2E-13 89.6 5.5 79 18-103 98-177 (311)
76 KOG0110 RNA-binding protein (R 98.8 4.4E-08 9.6E-13 90.1 11.2 75 20-100 518-596 (725)
77 KOG4209 Splicing factor RNPS1, 98.8 2E-08 4.3E-13 83.0 7.7 84 11-101 95-179 (231)
78 KOG0106 Alternative splicing f 98.8 1.7E-08 3.7E-13 82.0 6.2 72 18-102 2-73 (216)
79 KOG4454 RNA binding protein (R 98.7 5.4E-09 1.2E-13 84.4 2.3 76 17-99 9-84 (267)
80 KOG0151 Predicted splicing reg 98.7 3.4E-08 7.3E-13 90.9 7.4 91 10-106 165-261 (877)
81 KOG0226 RNA-binding proteins [ 98.7 1.8E-08 3.9E-13 82.9 4.0 76 17-98 190-266 (290)
82 PF04059 RRM_2: RNA recognitio 98.6 6.4E-07 1.4E-11 64.3 9.1 82 17-100 1-85 (97)
83 KOG0116 RasGAP SH3 binding pro 98.5 3.2E-07 7E-12 81.5 8.5 78 17-101 288-366 (419)
84 KOG0120 Splicing factor U2AF, 98.5 6.2E-08 1.3E-12 87.3 3.8 148 18-182 290-442 (500)
85 KOG1457 RNA binding protein (c 98.5 1.1E-06 2.4E-11 71.4 9.6 83 18-102 35-118 (284)
86 KOG4212 RNA-binding protein hn 98.5 3.2E-07 6.9E-12 80.7 6.7 72 17-98 536-607 (608)
87 KOG4660 Protein Mei2, essentia 98.3 4.5E-07 9.7E-12 81.6 3.8 71 15-95 73-143 (549)
88 KOG0147 Transcriptional coacti 98.2 3.2E-07 6.9E-12 82.5 1.3 83 13-102 175-258 (549)
89 KOG3152 TBP-binding protein, a 98.2 1.7E-05 3.6E-10 65.6 9.3 67 18-86 75-154 (278)
90 KOG0129 Predicted RNA-binding 98.0 3.6E-05 7.8E-10 69.1 10.0 66 15-81 257-327 (520)
91 KOG1190 Polypyrimidine tract-b 98.0 3.4E-05 7.4E-10 67.6 8.0 75 17-101 297-372 (492)
92 KOG1995 Conserved Zn-finger pr 97.9 8.8E-06 1.9E-10 70.0 4.0 78 17-100 66-152 (351)
93 KOG4210 Nuclear localization s 97.9 9.9E-06 2.2E-10 69.0 4.1 85 15-106 182-268 (285)
94 KOG1457 RNA binding protein (c 97.8 1.9E-05 4.1E-10 64.3 4.2 64 18-86 211-274 (284)
95 COG5175 MOT2 Transcriptional r 97.8 6E-05 1.3E-09 64.7 6.4 77 19-100 116-201 (480)
96 PF11608 Limkain-b1: Limkain b 97.7 0.00015 3.2E-09 50.5 6.4 68 18-100 3-75 (90)
97 KOG2314 Translation initiation 97.6 0.00013 2.9E-09 66.3 6.7 83 11-98 52-140 (698)
98 KOG4211 Splicing factor hnRNP- 97.6 0.00027 5.9E-09 63.2 8.3 74 19-101 12-85 (510)
99 PF08777 RRM_3: RNA binding mo 97.6 0.00017 3.7E-09 52.5 5.6 58 19-83 3-60 (105)
100 KOG4849 mRNA cleavage factor I 97.6 6.4E-05 1.4E-09 64.8 3.7 67 18-86 81-150 (498)
101 KOG0106 Alternative splicing f 97.5 6E-05 1.3E-09 61.4 2.9 72 16-100 98-169 (216)
102 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00028 6E-09 45.0 4.9 53 17-77 1-53 (53)
103 KOG4206 Spliceosomal protein s 97.5 0.00049 1.1E-08 56.0 7.4 76 15-99 144-219 (221)
104 KOG2193 IGF-II mRNA-binding pr 97.5 0.00014 3E-09 64.2 4.5 88 18-122 2-90 (584)
105 KOG4211 Splicing factor hnRNP- 97.3 0.00069 1.5E-08 60.7 6.7 76 18-100 104-180 (510)
106 KOG0120 Splicing factor U2AF, 97.3 0.00074 1.6E-08 61.3 6.8 68 33-106 425-496 (500)
107 KOG0129 Predicted RNA-binding 97.1 0.0012 2.7E-08 59.5 6.8 62 16-79 369-432 (520)
108 KOG1855 Predicted RNA-binding 97.1 0.00061 1.3E-08 60.2 4.7 71 13-83 227-309 (484)
109 KOG0128 RNA-binding protein SA 97.0 0.00039 8.4E-09 65.8 2.5 79 17-101 736-814 (881)
110 KOG1548 Transcription elongati 97.0 0.0053 1.1E-07 53.1 8.9 76 15-99 263-349 (382)
111 KOG0112 Large RNA-binding prot 97.0 0.0013 2.8E-08 62.8 5.4 78 16-102 454-531 (975)
112 KOG1190 Polypyrimidine tract-b 96.9 0.00062 1.3E-08 59.9 3.0 75 16-99 27-101 (492)
113 KOG4676 Splicing factor, argin 96.9 0.0016 3.5E-08 57.1 4.8 79 17-100 7-87 (479)
114 KOG4307 RNA binding protein RB 96.8 0.0054 1.2E-07 57.4 7.9 84 9-98 859-943 (944)
115 KOG1456 Heterogeneous nuclear 96.5 0.013 2.8E-07 51.4 8.1 76 17-102 287-363 (494)
116 KOG1456 Heterogeneous nuclear 96.5 0.013 2.9E-07 51.2 7.8 76 20-103 123-200 (494)
117 KOG1365 RNA-binding protein Fu 96.4 0.0042 9.2E-08 54.4 4.4 81 16-102 279-362 (508)
118 PF05172 Nup35_RRM: Nup53/35/4 96.1 0.02 4.3E-07 41.3 6.0 78 16-100 5-90 (100)
119 KOG2202 U2 snRNP splicing fact 95.9 0.0039 8.3E-08 51.8 1.7 62 34-101 85-147 (260)
120 KOG1365 RNA-binding protein Fu 95.9 0.021 4.6E-07 50.2 6.2 70 8-79 151-225 (508)
121 KOG2068 MOT2 transcription fac 95.9 0.0038 8.3E-08 53.7 1.4 80 18-101 78-162 (327)
122 KOG0112 Large RNA-binding prot 95.8 0.0049 1.1E-07 59.0 2.1 70 15-86 370-439 (975)
123 KOG0105 Alternative splicing f 95.8 0.054 1.2E-06 43.3 7.4 74 17-98 115-188 (241)
124 KOG1996 mRNA splicing factor [ 95.7 0.031 6.7E-07 47.6 6.3 69 32-104 301-369 (378)
125 PF08952 DUF1866: Domain of un 95.7 0.043 9.2E-07 42.2 6.4 74 15-102 25-107 (146)
126 KOG4574 RNA-binding protein (c 95.6 0.0097 2.1E-07 56.7 3.2 80 20-108 301-380 (1007)
127 KOG0128 RNA-binding protein SA 95.5 0.0012 2.6E-08 62.6 -3.1 63 19-83 669-732 (881)
128 KOG2416 Acinus (induces apopto 95.5 0.013 2.7E-07 54.1 3.3 78 16-101 443-521 (718)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.037 8E-07 43.9 5.2 84 15-100 5-96 (176)
130 PF08675 RNA_bind: RNA binding 95.1 0.1 2.2E-06 36.4 6.2 54 19-81 10-63 (87)
131 PF10309 DUF2414: Protein of u 94.8 0.12 2.6E-06 34.0 5.6 57 15-80 3-62 (62)
132 PF07576 BRAP2: BRCA1-associat 94.2 0.5 1.1E-05 34.6 8.3 65 19-86 15-80 (110)
133 PF15023 DUF4523: Protein of u 93.4 0.3 6.6E-06 37.5 6.2 61 14-82 83-147 (166)
134 KOG4307 RNA binding protein RB 92.5 0.31 6.7E-06 46.1 6.0 78 14-97 431-509 (944)
135 PF04847 Calcipressin: Calcipr 92.2 0.37 8.1E-06 38.5 5.5 62 30-102 8-71 (184)
136 PF11767 SET_assoc: Histone ly 91.4 0.94 2E-05 30.1 5.8 49 28-86 11-59 (66)
137 KOG2135 Proteins containing th 90.5 0.22 4.7E-06 45.0 2.8 74 26-111 381-455 (526)
138 PF03880 DbpA: DbpA RNA bindin 89.0 2.3 5E-05 28.5 6.4 59 27-99 11-74 (74)
139 KOG4454 RNA binding protein (R 88.6 0.11 2.4E-06 42.6 -0.5 75 10-86 73-151 (267)
140 KOG4210 Nuclear localization s 88.1 0.26 5.7E-06 42.1 1.5 68 17-86 88-156 (285)
141 KOG4660 Protein Mei2, essentia 87.5 1.1 2.4E-05 41.2 5.1 82 18-100 389-471 (549)
142 KOG0804 Cytoplasmic Zn-finger 87.4 1.9 4.2E-05 38.9 6.5 67 17-86 74-141 (493)
143 KOG2253 U1 snRNP complex, subu 86.5 0.38 8.1E-06 45.1 1.6 60 17-86 40-99 (668)
144 KOG4676 Splicing factor, argin 85.8 0.38 8.3E-06 42.6 1.2 74 6-86 141-214 (479)
145 KOG2591 c-Mpl binding protein, 84.9 3 6.6E-05 38.7 6.5 55 18-80 175-232 (684)
146 KOG2193 IGF-II mRNA-binding pr 83.8 0.045 9.9E-07 48.7 -5.3 76 17-100 80-155 (584)
147 KOG4285 Mitotic phosphoprotein 81.4 4.4 9.6E-05 34.9 5.8 59 19-86 199-257 (350)
148 PF08075 NOPS: NOPS (NUC059) d 81.0 1.3 2.8E-05 28.0 1.9 22 113-134 31-52 (52)
149 KOG2318 Uncharacterized conser 80.8 6.5 0.00014 36.7 7.0 83 16-100 173-306 (650)
150 PF03468 XS: XS domain; Inter 75.8 2.5 5.4E-05 31.2 2.4 51 19-73 10-69 (116)
151 KOG4410 5-formyltetrahydrofola 70.9 5.6 0.00012 34.1 3.7 48 17-71 330-378 (396)
152 KOG2891 Surface glycoprotein [ 66.5 28 0.00061 29.8 6.9 75 18-92 150-254 (445)
153 PF04977 DivIC: Septum formati 65.9 25 0.00054 23.2 5.5 26 173-198 44-71 (80)
154 PF04568 IATP: Mitochondrial A 55.6 70 0.0015 23.0 6.5 38 143-180 62-99 (100)
155 PF09707 Cas_Cas2CT1978: CRISP 51.9 30 0.00064 24.2 4.0 50 15-68 23-72 (86)
156 PF07292 NID: Nmi/IFP 35 domai 51.0 9.1 0.0002 26.9 1.3 29 10-38 45-73 (88)
157 PF02714 DUF221: Domain of unk 50.7 25 0.00054 29.9 4.2 32 63-100 1-32 (325)
158 COG0724 RNA-binding proteins ( 49.5 20 0.00043 28.2 3.3 64 13-77 221-284 (306)
159 KOG4008 rRNA processing protei 49.4 12 0.00025 31.2 1.9 33 15-47 38-70 (261)
160 PF10567 Nab6_mRNP_bdg: RNA-re 48.3 31 0.00068 29.6 4.3 57 16-74 14-78 (309)
161 PF14893 PNMA: PNMA 46.5 74 0.0016 27.9 6.5 53 13-69 14-71 (331)
162 PRK11558 putative ssRNA endonu 45.7 30 0.00065 24.8 3.3 51 15-69 25-75 (97)
163 PF15513 DUF4651: Domain of un 44.6 56 0.0012 21.4 4.1 18 32-49 9-26 (62)
164 KOG4213 RNA-binding protein La 42.9 26 0.00055 28.1 2.8 58 15-79 109-169 (205)
165 PF08700 Vps51: Vps51/Vps67; 42.8 1E+02 0.0022 20.7 6.1 53 126-178 5-58 (87)
166 KOG1295 Nonsense-mediated deca 40.1 34 0.00075 30.3 3.4 69 18-86 8-78 (376)
167 PRK14548 50S ribosomal protein 39.2 1.3E+02 0.0028 20.8 5.7 57 19-79 22-80 (84)
168 KOG4483 Uncharacterized conser 36.6 67 0.0015 29.0 4.7 53 19-79 393-446 (528)
169 PF07292 NID: Nmi/IFP 35 domai 36.1 41 0.00089 23.6 2.7 36 63-99 1-36 (88)
170 TIGR03636 L23_arch archaeal ri 36.0 1.4E+02 0.003 20.3 5.8 57 19-79 15-73 (77)
171 COG0030 KsgA Dimethyladenosine 34.4 58 0.0013 27.5 3.9 30 17-46 95-124 (259)
172 PF13518 HTH_28: Helix-turn-he 33.4 30 0.00065 20.6 1.5 24 172-195 2-25 (52)
173 PF04568 IATP: Mitochondrial A 33.0 1.7E+02 0.0037 21.0 5.5 35 135-169 64-98 (100)
174 KOG4019 Calcineurin-mediated s 32.5 75 0.0016 25.5 3.9 75 16-101 9-89 (193)
175 smart00596 PRE_C2HC PRE_C2HC d 32.0 76 0.0016 21.2 3.3 59 32-99 2-62 (69)
176 TIGR02209 ftsL_broad cell divi 31.9 1.6E+02 0.0034 19.7 5.6 23 176-198 54-77 (85)
177 PF06755 DUF1219: Protein of u 31.1 21 0.00046 26.1 0.6 12 187-198 29-40 (114)
178 PF01452 Rota_NSP4: Rotavirus 30.4 63 0.0014 25.2 3.1 14 160-173 121-134 (173)
179 TIGR01873 cas_CT1978 CRISPR-as 30.1 78 0.0017 22.2 3.3 51 15-69 23-74 (87)
180 TIGR03047 PS_II_psb28 photosys 29.5 1.5E+02 0.0033 21.7 4.8 77 44-133 12-95 (109)
181 KOG3313 Molecular chaperone Pr 29.3 67 0.0015 25.6 3.2 46 143-196 128-173 (187)
182 PLN00078 photosystem I reactio 29.3 1.3E+02 0.0028 21.9 4.3 36 154-189 68-108 (122)
183 PF15407 Spo7_2_N: Sporulation 26.9 41 0.00089 22.3 1.4 19 14-32 24-42 (67)
184 KOG2295 C2H2 Zn-finger protein 26.4 9.9 0.00022 35.4 -2.2 68 17-86 231-299 (648)
185 PLN00039 photosystem II reacti 26.3 1.2E+02 0.0025 22.3 3.8 81 44-133 14-96 (111)
186 PF03439 Spt5-NGN: Early trans 26.3 85 0.0018 21.4 3.0 24 60-83 44-67 (84)
187 PF07530 PRE_C2HC: Associated 25.5 1.3E+02 0.0028 19.8 3.6 60 32-100 2-63 (68)
188 COG1422 Predicted membrane pro 24.7 3.8E+02 0.0083 21.8 6.9 15 125-139 69-83 (201)
189 PF00398 RrnaAD: Ribosomal RNA 23.9 56 0.0012 27.1 2.0 28 17-44 97-126 (262)
190 CHL00128 psbW photosystem II p 22.9 2.3E+02 0.0049 20.9 4.7 77 44-133 15-98 (113)
191 smart00738 NGN In Spt5p, this 22.4 1E+02 0.0022 21.3 2.9 25 60-84 59-83 (106)
192 PRK09720 cybC cytochrome b562; 21.8 3.1E+02 0.0068 19.7 6.8 53 121-173 46-99 (100)
193 COG5193 LHP1 La protein, small 21.3 42 0.00091 30.1 0.8 60 16-77 173-243 (438)
194 KOG4196 bZIP transcription fac 21.2 3.7E+02 0.0081 20.3 7.5 96 65-180 22-118 (135)
195 KOG4365 Uncharacterized conser 20.7 22 0.00047 32.4 -1.1 75 18-99 4-79 (572)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2.8e-18 Score=132.08 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=77.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+++|++||.|.+|.++.| .++++ +|||||+|.+.++|+.|++.||+..+. ++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~--kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr 104 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS--RGFGFVNFNDEGAATAAISEMDGKELN----GR 104 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 345688999999999999999999999999999999999 88998 999999999999999999999999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 105 ~l~V~~a~~~ 114 (144)
T PLN03134 105 HIRVNPANDR 114 (144)
T ss_pred EEEEEeCCcC
Confidence 9999998753
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=4.6e-17 Score=140.88 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=74.8
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++|||+|||+.+++++|+++|++||.|.+|++++| .||.+ +|||||+|.+.++|..||..|||..|. ||+|+|
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~s--kG~aFV~F~~~~~A~~Ai~~lnG~~~~----gr~i~V 343 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQC--KGYGFVSMTNYDEAAMAILSLNGYTLG----NRVLQV 343 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCc--cceEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 47999999999999999999999999999999999 69998 999999999999999999999999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
.++..
T Consensus 344 ~~~~~ 348 (352)
T TIGR01661 344 SFKTN 348 (352)
T ss_pred EEccC
Confidence 99864
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=7.8e-17 Score=107.44 Aligned_cols=70 Identities=29% Similarity=0.480 Sum_probs=66.0
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
|||+|||+.+|+++|+++|++||.|..+.+..+.++.+ +|+|||+|.+.++|..|++.|+|..+. |++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKS--KGYAFVEFESEEDAEKALEELNGKKIN----GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSE--EEEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccc--cceEEEEEcCHHHHHHHHHHcCCCEEC----ccCcC
Confidence 79999999999999999999999999999999867776 999999999999999999999999998 88775
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.8e-16 Score=137.19 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=76.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
+.+|||+|||+.+++++|+.+|++||+|.+|++++| .+|++ +|||||+|.+.++|..||..|||..+. |++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s--~g~afV~f~~~~~A~~Ai~~l~g~~l~----g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQS--LGYGFVNYVRPEDAEKAVNSLNGLRLQ----NKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCcc--ceEEEEEECcHHHHHHHHhhcccEEEC----CeeEE
Confidence 578999999999999999999999999999999999 78998 999999999999999999999999999 99999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++.|.
T Consensus 77 v~~a~~~ 83 (352)
T TIGR01661 77 VSYARPS 83 (352)
T ss_pred EEeeccc
Confidence 9998764
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4.1e-16 Score=135.63 Aligned_cols=82 Identities=10% Similarity=0.220 Sum_probs=77.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+++|+++|+++|++||.|.+|+|+.| .++++ +|||||+|.++++|..|+..|||..+. +++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~s--rGyaFVeF~~~e~A~~Ai~~LnG~~l~----gr~ 178 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYS--FGYAFVDFGSEADSQRAIKNLNGITVR----NKR 178 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCcc--CcEEEEEEccHHHHHHHHHHcCCCccC----Cce
Confidence 45679999999999999999999999999999999999 89998 999999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++++.
T Consensus 179 i~V~~a~p~ 187 (346)
T TIGR01659 179 LKVSYARPG 187 (346)
T ss_pred eeeeccccc
Confidence 999998763
No 6
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-16 Score=125.81 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=83.1
Q ss_pred hhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 12 FLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 12 f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
|....+|+||||+|...|++..|..+|-+||.|.+|.++.| .+++. +|||||+|...++|..||..||+.++.
T Consensus 5 ~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkH--RgFgFVefe~aEDAaaAiDNMnesEL~---- 78 (298)
T KOG0111|consen 5 QMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKH--RGFGFVEFEEAEDAAAAIDNMNESELF---- 78 (298)
T ss_pred cccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccc--cceeEEEeeccchhHHHhhcCchhhhc----
Confidence 44567899999999999999999999999999999999999 78886 999999999999999999999999999
Q ss_pred CcceEEEecccccCCCC
Q 029074 91 PRPVRARAAEVEMFDDH 107 (199)
Q Consensus 91 gr~l~v~~a~~e~~~~~ 107 (199)
||.|+|.+|+|+.....
T Consensus 79 GrtirVN~AkP~kikeg 95 (298)
T KOG0111|consen 79 GRTIRVNLAKPEKIKEG 95 (298)
T ss_pred ceeEEEeecCCccccCC
Confidence 99999999998765543
No 7
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=5.1e-14 Score=116.86 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=70.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++|||||||+.+|+++|+++|+.||.|.+|.++.+.. + +|||||+|.++++|..|+. |||..|. |++|+|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~--~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--R--SQIAYVTFKDPQGAETALL-LSGATIV----DQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--C--CCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEE
Confidence 58999999999999999999999999999999998732 3 7999999999999999995 9999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
.++..
T Consensus 75 t~a~~ 79 (260)
T PLN03120 75 TPAED 79 (260)
T ss_pred EeccC
Confidence 98863
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.8e-15 Score=111.25 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=73.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
+.+.|||||||+..++|+.|.++|+.+|+|.+|.+-.| .+-.+ .|||||+|.+.++|..|+.-++|..+. .++
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktp--CGFCFVeyy~~~dA~~AlryisgtrLd----dr~ 107 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTP--CGFCFVEYYSRDDAEDALRYISGTRLD----DRP 107 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCc--cceEEEEEecchhHHHHHHHhccCccc----ccc
Confidence 55789999999999999999999999999999988888 55555 899999999999999999999999999 999
Q ss_pred eEEEec
Q 029074 94 VRARAA 99 (199)
Q Consensus 94 l~v~~a 99 (199)
|++.+-
T Consensus 108 ir~D~D 113 (153)
T KOG0121|consen 108 IRIDWD 113 (153)
T ss_pred eeeecc
Confidence 999875
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.6e-15 Score=129.86 Aligned_cols=144 Identities=17% Similarity=0.371 Sum_probs=111.8
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.-||||.||.++.|++|.-+|++.|.|.+++++.| .+|.+ +|||||+|.+++.|+.||+.||+++|. .|+.|.|
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~n--RGYAFVtf~~Ke~Aq~Aik~lnn~Eir---~GK~igv 158 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDN--RGYAFVTFCTKEEAQEAIKELNNYEIR---PGKLLGV 158 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCC--cceEEEEeecHHHHHHHHHHhhCcccc---CCCEeEE
Confidence 45999999999999999999999999999999999 99998 999999999999999999999999886 3777777
Q ss_pred Eecccc--cC---------------------------------CC----CC------------------C------CCCC
Q 029074 97 RAAEVE--MF---------------------------------DD----HP------------------A------KPGQ 113 (199)
Q Consensus 97 ~~a~~e--~~---------------------------------~~----~p------------------~------~p~~ 113 (199)
+.+... .| .| |. . .-|.
T Consensus 159 c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn 238 (506)
T KOG0117|consen 159 CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN 238 (506)
T ss_pred EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC
Confidence 644210 00 00 00 0 0133
Q ss_pred cccccccCCCC-chhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhh
Q 029074 114 RIQFQWLDPND-PDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIMSD 182 (199)
Q Consensus 114 ~~~~r~~~~~~-~~~~~~~~~k~l~~~~~~e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~~~ 182 (199)
.+.+.|.+|.. ++.+.+.++|-|.-|+.. ..--+|.|+..|.+|+.++.|+.=
T Consensus 239 ~~tVdWAep~~e~ded~ms~VKvLYVRNL~----------------~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 239 AITVDWAEPEEEPDEDTMSKVKVLYVRNLM----------------ESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred cceeeccCcccCCChhhhhheeeeeeeccc----------------hhhhHHHHHHHHHhccceEEeecc
Confidence 34568887764 788899999988766433 345667888888899888877643
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=8.1e-15 Score=98.41 Aligned_cols=70 Identities=31% Similarity=0.441 Sum_probs=63.4
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
|||+|||+++++++|+.+|+.||.|..+.+..+..|.+ +|+|||+|.+.++|..|+..++|..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~--~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQS--RGFAFVEFSSEEDAKRALELLNGKEID----GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSE--EEEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeecccc--CCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEcC
Confidence 79999999999999999999999999999999955877 999999999999999999999989888 88764
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=3.4e-15 Score=120.86 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=71.8
Q ss_pred hhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 12 FLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 12 f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
|.+..-.+||||+|+|.++.+.|++.|++||.|.++.|+.| .||+| +|||||+|.+.+.|.+|++..|-. |.
T Consensus 7 ~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs--kGyGfVTf~d~~aa~rAc~dp~pi-Id---- 79 (247)
T KOG0149|consen 7 FGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS--KGYGFVTFRDAEAATRACKDPNPI-ID---- 79 (247)
T ss_pred CCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc--cceeeEEeecHHHHHHHhcCCCCc-cc----
Confidence 34444568999999999999999999999999999999999 99999 999999999999999999866644 56
Q ss_pred CcceEEEecc
Q 029074 91 PRPVRARAAE 100 (199)
Q Consensus 91 gr~l~v~~a~ 100 (199)
||...|..|.
T Consensus 80 GR~aNcnlA~ 89 (247)
T KOG0149|consen 80 GRKANCNLAS 89 (247)
T ss_pred ccccccchhh
Confidence 8887777664
No 12
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.6e-16 Score=122.24 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
+.-|||||||+..||.+|..+|++||.|+.|.+++| .||+| +||||+.|++..+...|+..|||..+. ||.|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS--KGFaFLcYEDQRSTILAVDN~NGiki~----gRtir 108 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS--KGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIR 108 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc--cceEEEEecCccceEEEEeccCCceec----ceeEE
Confidence 556999999999999999999999999999999999 99999 999999999999999999999999999 99999
Q ss_pred EEec
Q 029074 96 ARAA 99 (199)
Q Consensus 96 v~~a 99 (199)
|.+.
T Consensus 109 VDHv 112 (219)
T KOG0126|consen 109 VDHV 112 (219)
T ss_pred eeec
Confidence 9876
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=1.1e-14 Score=133.90 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|+.||.|.+|++++| .+|++ +|||||+|.+.++|..||..|||+.+. |+.|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgks--KGfGFVeFe~~e~A~kAI~amNg~elg----Gr~L 276 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH--KGYGFIEYNNLQSQSEAIASMNLFDLG----GQYL 276 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc--CCeEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 3468999999999999999999999999999999999 77887 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 277 rV~kAi~ 283 (612)
T TIGR01645 277 RVGKCVT 283 (612)
T ss_pred EEEecCC
Confidence 9999863
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=1.4e-14 Score=126.08 Aligned_cols=82 Identities=20% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+++|++||.|.+|++++| .+|++ +|||||+|.+.++|+.||+.||+..+. +.+++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~--kG~aFV~F~~~e~A~~Ai~~lng~~~~--g~~~~l 267 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTP--RGVAFVRFNKREEAQEAISALNNVIPE--GGSQPL 267 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCccC--CCceeE
Confidence 3568999999999999999999999999999999999 78998 999999999999999999999999775 335799
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.+|..
T Consensus 268 ~V~~a~~ 274 (346)
T TIGR01659 268 TVRLAEE 274 (346)
T ss_pred EEEECCc
Confidence 9998864
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=1e-14 Score=128.67 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=72.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCH--HHHHHHHHHhCCCceeccCCC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENL--KQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~--~~A~~Ai~~lng~~~~~~g~g 91 (199)
+....+||||||++.+++++|+.+|+.||.|.+|.|++. +| +|||||+|.+. .++..||..|||..++ |
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG----RGFAFVEMssdddaEeeKAISaLNGAEWK----G 77 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG----RSFAYIDFSPSSTNSLTKLFSTYNGCVWK----G 77 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC----CceEEEEecCCcHHHHHHHHHHhcCCeec----C
Confidence 344578999999999999999999999999999999954 44 79999999987 7899999999999999 9
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
|.|+|..|+|
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999999986
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.1e-14 Score=118.47 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=75.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+|-|.|||.++++++|+++|.+||.|.+|.+.+| .||.+ +|||||.|.+.++|.+||..|||+-++ .--|+
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~--kGFAFVtF~sRddA~rAI~~LnG~gyd----~LILr 262 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLS--KGFAFVTFESRDDAARAIADLNGYGYD----NLILR 262 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcc--cceEEEEEecHHHHHHHHHHccCcccc----eEEEE
Confidence 457999999999999999999999999999999999 99999 999999999999999999999999888 88899
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.|++|.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999873
No 17
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=9.8e-15 Score=113.53 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=70.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++||||||+..+++.+|+.+|+.||++.+|.|.++ .+|||||+|+++.+|+.|+..|+|..|. |..++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn------PPGfAFVEFed~RDA~DAvr~LDG~~~c----G~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN------PPGFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec------CCCceEEeccCcccHHHHHhhcCCcccc----CceEE
Confidence 4678999999999999999999999999999988764 2899999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|+....
T Consensus 79 VE~S~G 84 (195)
T KOG0107|consen 79 VELSTG 84 (195)
T ss_pred EEeecC
Confidence 998864
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.3e-14 Score=133.37 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=73.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||||||+.+++++|+++|++||.|.+|+++.| .+|++ +|||||+|.+.++|..|+..|||..+. ||+|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgks--kGfAFVeF~s~e~A~~Ai~~lnG~~i~----GR~I 179 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH--KGFAFVEYEVPEAAQLALEQMNGQMLG----GRNI 179 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCc--CCeEEEEeCcHHHHHHHHHhcCCeEEe----ccee
Confidence 3468999999999999999999999999999999999 89998 999999999999999999999999999 9999
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
+|.++
T Consensus 180 kV~rp 184 (612)
T TIGR01645 180 KVGRP 184 (612)
T ss_pred eeccc
Confidence 99854
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=126.45 Aligned_cols=136 Identities=18% Similarity=0.313 Sum_probs=105.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..-++|||.+|..++|.+|+++|++||.|.+|.+++| .||.+ +|||||.|.+.++|..|+.+|++. +.+.|+..||
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s--~gcCFv~~~trk~a~~a~~Alhn~-ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQS--KGCCFVKYYTRKEADEAINALHNQ-KTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcc--cceEEEEeccHHHHHHHHHHhhcc-cccCCCCcce
Confidence 3457999999999999999999999999999999999 88988 999999999999999999999988 5568999999
Q ss_pred EEEecccccCCCCCCCCCCcccccccCCCCchhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 029074 95 RARAAEVEMFDDHPAKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYE 174 (199)
Q Consensus 95 ~v~~a~~e~~~~~p~~p~~~~~~r~~~~~~~~~~~~~~~k~l~~~~~~e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~ 174 (199)
.|++|..|...- +.++ |.+... +- .+--+..+...|.+|+
T Consensus 110 qvk~Ad~E~er~---------------~~e~--------KLFvg~-------ls----------K~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 110 QVKYADGERERI---------------VEER--------KLFVGM-------LS----------KQCTENEVREIFSRFG 149 (510)
T ss_pred eecccchhhhcc---------------ccch--------hhhhhh-------cc----------ccccHHHHHHHHHhhC
Confidence 999997642110 0010 000100 00 1223445677789999
Q ss_pred hHHhhhhhchhhhhhhcccc
Q 029074 175 TLEGIMSDGTAHRLGRRYDV 194 (199)
Q Consensus 175 ~~~~~~~~~~~~~l~~~~~~ 194 (199)
.||.+..=.+...++|-|.+
T Consensus 150 ~Ied~~ilrd~~~~sRGcaF 169 (510)
T KOG0144|consen 150 HIEDCYILRDPDGLSRGCAF 169 (510)
T ss_pred ccchhhheecccccccceeE
Confidence 99999888888888876653
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=9.2e-15 Score=123.21 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++|+|+|||+...+.||+.+|++||.|.+|.|+.++.|- ||||||+|++.++|++|-..|||..+. ||.|.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGS---KGFGFVTmen~~dadRARa~LHgt~VE----GRkIEV 168 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGS---KGFGFVTMENPADADRARAELHGTVVE----GRKIEV 168 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCC---CccceEEecChhhHHHHHHHhhcceee----ceEEEE
Confidence 5789999999999999999999999999999999998887 999999999999999999999999999 999999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
+.|++..
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9998753
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=6e-15 Score=128.09 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=79.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++||||.|+..+||.+++++|++||.|++|.|++|..|.| ||||||.|.+.+.|..||+.|||. ..+.|...||.|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s--RGcaFV~fstke~A~~Aika~ng~-~tmeGcs~PLVV 200 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS--RGCAFVKFSTKEMAVAAIKALNGT-QTMEGCSQPLVV 200 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc--cceeEEEEehHHHHHHHHHhhccc-eeeccCCCceEE
Confidence 68999999999999999999999999999999999999998 999999999999999999999998 455888999999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
++|.+..
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 9998753
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=3.9e-14 Score=130.29 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=73.0
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
+|||||||+.+|+++|+++|++||.|.+|++++| .|+++ +|||||+|.+.++|..|++.+|+..+. |++|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s--~G~afV~F~~~~~A~~Al~~ln~~~i~----gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRS--LGYGYVNFQNPADAERALETMNFKRLG----GKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CeeEEee
Confidence 7999999999999999999999999999999999 77988 999999999999999999999999998 9999999
Q ss_pred ecc
Q 029074 98 AAE 100 (199)
Q Consensus 98 ~a~ 100 (199)
++.
T Consensus 76 ~s~ 78 (562)
T TIGR01628 76 WSQ 78 (562)
T ss_pred ccc
Confidence 875
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=5.1e-14 Score=126.15 Aligned_cols=78 Identities=22% Similarity=0.437 Sum_probs=74.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+.+|++||.|..|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~--~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~ 259 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRS--KGFGFIQFHDAEEAKEALEVMNGFELA----GRPIK 259 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCcc--ceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEE
Confidence 589999999999999999999999999999999999 77887 999999999999999999999999988 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|.++.
T Consensus 260 v~~a~ 264 (457)
T TIGR01622 260 VGYAQ 264 (457)
T ss_pred EEEcc
Confidence 99975
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.9e-14 Score=118.65 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=74.3
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.||||-|++.++.+.|+++|.+||.|.+++|++| .|++| +|||||.|.+.++|++||..|||..|. +|.||-.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~Ks--KGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTN 137 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKS--KGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTN 137 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcc--cceeEEeccchHHHHHHHHHhCCeeec----cceeecc
Confidence 4999999999999999999999999999999999 99999 999999999999999999999999998 9999999
Q ss_pred eccc
Q 029074 98 AAEV 101 (199)
Q Consensus 98 ~a~~ 101 (199)
||..
T Consensus 138 WATR 141 (321)
T KOG0148|consen 138 WATR 141 (321)
T ss_pred cccc
Confidence 9963
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=6.5e-14 Score=126.95 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=75.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||||||+.+++++|+++|++||.|..+.++.+ .+|.+ +|||||+|.+.+.|..|+..|||..|. |+.|.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~--~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~ 368 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLS--KGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLH 368 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCc--CeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 578999999999999999999999999999999998 78988 999999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.+|..
T Consensus 369 v~~a~~ 374 (509)
T TIGR01642 369 VQRACV 374 (509)
T ss_pred EEECcc
Confidence 999864
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1e-13 Score=91.22 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=65.9
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
+|||+|||+.++.++|+++|.+||.|..+.+..+. +.+ +|+|||+|.+...|..|+..++|..+. |++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~--~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKS--KGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCC--CceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEeeC
Confidence 58999999999999999999999999999988776 565 899999999999999999999999888 8888763
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=6.8e-14 Score=128.67 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=76.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
....+|||+|||+.+++++|+++|++||.|.+|+++.|.+|.+ +|||||+|.+.++|.+|+..|||..+. |++|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~--~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l 356 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVS--RGFGFVCFSNPEEANRAVTEMHGRMLG----GKPL 356 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCc--CCeEEEEeCCHHHHHHHHHHhcCCeeC----Ccee
Confidence 3456899999999999999999999999999999999988998 999999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
.|.+|..
T Consensus 357 ~V~~a~~ 363 (562)
T TIGR01628 357 YVALAQR 363 (562)
T ss_pred EEEeccC
Confidence 9998763
No 28
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=9.7e-14 Score=112.83 Aligned_cols=79 Identities=29% Similarity=0.435 Sum_probs=75.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||||||+.+++++|..+|.+||.|..+.+..+ .+|.+ +|||||+|.+.++|..|+..++|..|. |++|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~--~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKS--RGFAFVEFESEESAEKAIEELNGKELE----GRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCcc--CceEEEEecCHHHHHHHHHHcCCCeEC----CceeE
Confidence 589999999999999999999999999999999999 79998 999999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|..+.+
T Consensus 189 v~~~~~ 194 (306)
T COG0724 189 VQKAQP 194 (306)
T ss_pred eecccc
Confidence 999653
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1e-13 Score=124.21 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=74.9
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
+...++|||+|||+.+++++|+++|++||.|..|.++.| .+|.+ +|||||+|.+.++|..|+. |+|..+. |+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~s--kg~afVeF~~~e~A~~Al~-l~g~~~~----g~ 158 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRS--KGVAYVEFYDVESVIKALA-LTGQMLL----GR 158 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCc--ceEEEEEECCHHHHHHHHH-hCCCEEC----Ce
Confidence 456789999999999999999999999999999999999 88988 9999999999999999996 9999998 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|.|..+..
T Consensus 159 ~i~v~~~~~ 167 (457)
T TIGR01622 159 PIIVQSSQA 167 (457)
T ss_pred eeEEeecch
Confidence 999987643
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=1.4e-13 Score=126.36 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+++++++|+.+|++||.|.+|+|++|.+|.+ +|||||+|.+.++|+.||+.||+..+. .++.+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~s--RGfaFV~F~~~e~A~~Ai~~lng~~i~---~Gr~l~ 131 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQN--RGYAFVTFCGKEEAKEAVKLLNNYEIR---PGRLLG 131 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCc--cceEEEEeCCHHHHHHHHHHcCCCeec---CCcccc
Confidence 347899999999999999999999999999999999989998 999999999999999999999999874 156666
Q ss_pred EEec
Q 029074 96 ARAA 99 (199)
Q Consensus 96 v~~a 99 (199)
|..+
T Consensus 132 V~~S 135 (578)
T TIGR01648 132 VCIS 135 (578)
T ss_pred cccc
Confidence 6544
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=4.2e-14 Score=112.72 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=74.8
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.+|-|.||.+.++.++|+.+|++||.|.+|.|++| .|+.+ +|||||-|....+|+.|+++|+|..++ |+.|+|
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~s--RgFaFVrf~~k~daedA~damDG~~ld----gRelrV 87 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQS--RGFAFVRFHDKRDAEDALDAMDGAVLD----GRELRV 87 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccc--cceeEEEeeecchHHHHHHhhcceeec----cceeee
Confidence 36999999999999999999999999999999999 99998 999999999999999999999999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
..|+-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 99864
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=98.08 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=71.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
..+.|-|||.|||+.+|.+++.++|++||+|..|++-.. .+. +|-|||.|++..+|..|++.|+|+.+. ++.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~----~ry 86 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KET---RGTAFVVYEDIFDAKKACDHLSGYNVD----NRY 86 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cCc---CceEEEEehHhhhHHHHHHHhcccccC----Cce
Confidence 345688999999999999999999999999999998764 112 899999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
+.|-+..|
T Consensus 87 l~vlyyq~ 94 (124)
T KOG0114|consen 87 LVVLYYQP 94 (124)
T ss_pred EEEEecCH
Confidence 99987654
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.8e-13 Score=114.17 Aligned_cols=78 Identities=15% Similarity=0.310 Sum_probs=74.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+||||+.|+++++|..|+..|+.||.|++|+|+.| -||+| +|||||+|+++.+...|-+..+|..|. |+.|-|
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgks--kGYAFIeye~erdm~~AYK~adG~~Id----grri~V 175 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKS--KGYAFIEYEHERDMKAAYKDADGIKID----GRRILV 175 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCc--cceEEEEeccHHHHHHHHHhccCceec----CcEEEE
Confidence 79999999999999999999999999999999999 99999 999999999999999999999999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
..-..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 87653
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=111.54 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=68.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
..+|||+||++.+|+++|+++|+.||.|.+|++++| +.+ +|||||+|.++..|..|+ .|||..|. +++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et--~gfAfVtF~d~~aaetAl-lLnGa~l~----d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEY--ACTAYVTFKDAYALETAV-LLSGATIV----DQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCc--ceEEEEEECCHHHHHHHH-hcCCCeeC----CceEEE
Confidence 468999999999999999999999999999999987 344 789999999999999999 59999999 999999
Q ss_pred Eecc
Q 029074 97 RAAE 100 (199)
Q Consensus 97 ~~a~ 100 (199)
..+.
T Consensus 76 t~~~ 79 (243)
T PLN03121 76 TRWG 79 (243)
T ss_pred EeCc
Confidence 8764
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=5.8e-14 Score=109.87 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=75.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
-...|||||||+..++++.|.++|-|.|+|.++++++| .+... +||||++|.++++|+-||+.||...+. |||
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~--qGygF~Ef~~eedadYAikiln~VkLY----grp 80 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKH--QGYGFAEFRTEEDADYAIKILNMVKLY----GRP 80 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccc--cceeEEEEechhhhHHHHHHHHHHHhc----Cce
Confidence 34679999999999999999999999999999999999 77765 999999999999999999999998899 999
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
|+|..+.
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 9999886
No 36
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.1e-13 Score=106.23 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=94.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||||||.++.+.+|..+|.+||.|..|.+.. ..|. .+||||+|+++.+|+.||..-+|+.+. |..|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~-r~g~---ppfafVeFEd~RDAeDAiygRdGYdyd----g~rL 75 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN-RPGP---PPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRL 75 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc-CCCC---CCeeEEEecCccchhhhhhcccccccC----cceE
Confidence 3468999999999999999999999999999998743 3444 679999999999999999999999999 9999
Q ss_pred EEEecccccC-CC-----------------CCCCCCCcccccccCCCCchhHHHHHHHHHHHH
Q 029074 95 RARAAEVEMF-DD-----------------HPAKPGQRIQFQWLDPNDPDFEVAQRLKRLARK 139 (199)
Q Consensus 95 ~v~~a~~e~~-~~-----------------~p~~p~~~~~~r~~~~~~~~~~~~~~~k~l~~~ 139 (199)
+|.++..-.- .+ +-.+|.+..++|.+...-|..-.|+.+|+-++.
T Consensus 76 RVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe 138 (241)
T KOG0105|consen 76 RVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE 138 (241)
T ss_pred EEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh
Confidence 9999864310 00 112456666788877777777788888887765
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-13 Score=112.08 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=72.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
.-...+|||||++..+|+++|+..|++||+|.+|++..+ +||+||.|++++.|..||..+||.++. |..
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-------qGYaFVrF~tkEaAahAIv~mNntei~----G~~ 229 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-------QGYAFVRFETKEAAAHAIVQMNNTEIG----GQL 229 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-------cceEEEEecchhhHHHHHHHhcCceeC----ceE
Confidence 345678999999999999999999999999999999876 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.|-+.
T Consensus 230 VkCsWGKe 237 (321)
T KOG0148|consen 230 VRCSWGKE 237 (321)
T ss_pred EEEecccc
Confidence 99998764
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=4.7e-13 Score=87.62 Aligned_cols=70 Identities=27% Similarity=0.481 Sum_probs=64.3
Q ss_pred ecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 22 LDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 22 VgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
|+|||..+++++|+.+|++||.|..+.+..+ .++.+ +|+|||+|.+.++|..|+..+++..+. ++.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~--~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKS--KGFAFVEFESEEDAEKALEALNGKELD----GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCC--CceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEeC
Confidence 6899999999999999999999999999988 56777 999999999999999999999999888 8888763
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.5e-13 Score=111.76 Aligned_cols=82 Identities=13% Similarity=0.277 Sum_probs=77.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.+.+|.|.-||..+|+++++.+|+..|.|++|++++| -+|.| .|||||.|-++.+|++||..|||..+. .+.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS--LGYGFVNYv~p~DAe~AintlNGLrLQ----~KTI 113 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS--LGYGFVNYVRPKDAEKAINTLNGLRLQ----NKTI 113 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc--cccceeeecChHHHHHHHhhhcceeec----cceE
Confidence 4567999999999999999999999999999999999 89998 999999999999999999999999999 9999
Q ss_pred EEEeccccc
Q 029074 95 RARAAEVEM 103 (199)
Q Consensus 95 ~v~~a~~e~ 103 (199)
+|++|+|..
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999999853
No 40
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.43 E-value=5.5e-13 Score=106.21 Aligned_cols=99 Identities=25% Similarity=0.369 Sum_probs=84.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccC-CceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQF-GNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~f-G~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
-+||+.+|..+.+..+..+|.+| |.|.++++.++ .||.| +|||||+|++++.|..|.+.||++.|+ ++.|.|
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNS--KgYAFVEFEs~eVA~IaAETMNNYLl~----e~lL~c 124 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNS--KGYAFVEFESEEVAKIAAETMNNYLLM----EHLLEC 124 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCc--CceEEEEeccHHHHHHHHHHhhhhhhh----hheeee
Confidence 48999999999999999999999 78888999999 99999 999999999999999999999999999 999999
Q ss_pred Eecccc-cC-------CCCCCCCCCcccccccCCC
Q 029074 97 RAAEVE-MF-------DDHPAKPGQRIQFQWLDPN 123 (199)
Q Consensus 97 ~~a~~e-~~-------~~~p~~p~~~~~~r~~~~~ 123 (199)
.+..|+ +. ...|..|+......|..++
T Consensus 125 ~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~~~~~ 159 (214)
T KOG4208|consen 125 HVMPPEQKVEKNLKKVSGTPFKPGKTVPIKRLQDN 159 (214)
T ss_pred EEeCchhhhhhhhhhhcCCcCCCCCcccccccCcc
Confidence 999887 21 2235555555555555443
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=4.1e-13 Score=119.30 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=76.4
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+.|||||+|++++++.|..+|+..|.|.+++++.| .||++ +||||++|.+.++|..|++.|||..+. ||+|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~--~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKP--KGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCc--CceeeEecCchhhHHHHHHhcCCcccC----CceEEe
Confidence 88999999999999999999999999999999999 99998 999999999999999999999999999 999999
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
.++...
T Consensus 93 ~~~~~~ 98 (435)
T KOG0108|consen 93 NYASNR 98 (435)
T ss_pred eccccc
Confidence 998654
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=2.1e-12 Score=85.30 Aligned_cols=73 Identities=29% Similarity=0.494 Sum_probs=67.0
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
+|+|+|||+.+++++|+.+|..||.|..+.+..+..+.+ +|+|||+|.+.++|..|+..+++..+. ++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~--~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKS--KGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 589999999999999999999999999999998854454 899999999999999999999999888 8888876
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.40 E-value=1.1e-12 Score=118.98 Aligned_cols=75 Identities=28% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh--CCCceeccCCCcce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSL--HEFPFMMSGMPRPV 94 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~l--ng~~~~~~g~gr~l 94 (199)
+++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..+ ++..+. |++|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-------k~~afVef~~~e~A~~Ai~~~~~~~~~l~----g~~l 70 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-------KRQALVEFEDEESAKACVNFATSVPIYIR----GQPA 70 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-------CCEEEEEeCchHHHHHHHHHhhcCCceEc----CeEE
Confidence 689999999999999999999999999999999853 899999999999999999975 677777 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++...
T Consensus 71 ~v~~s~~~ 78 (481)
T TIGR01649 71 FFNYSTSQ 78 (481)
T ss_pred EEEecCCc
Confidence 99998643
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6.4e-13 Score=99.62 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=72.9
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.|||.++....|+++|...|+.||.|+.+.+-.| .||-. +|||+|+|++..+|+.|+..+||..++ +.+|.|.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~--KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v~VD 147 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYV--KGYALVEYETLKEAQAAIDALNGAELL----GQNVSVD 147 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccc--cceeeeehHhHHHHHHHHHhccchhhh----CCceeEE
Confidence 5999999999999999999999999999999999 99998 999999999999999999999999999 9999999
Q ss_pred ec
Q 029074 98 AA 99 (199)
Q Consensus 98 ~a 99 (199)
|+
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 98
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=1.3e-12 Score=120.05 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=68.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccC--CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQF--GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~f--G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.++|||+|||+.+++++|+++|++| |.|.+|.++ ++||||+|.+.++|..|+..|||..|. |+.|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---------rgfAFVeF~s~e~A~kAi~~lnG~~i~----Gr~I 299 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---------RDYAFVHFEDREDAVKAMDELNGKELE----GSEI 299 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---------cCeEEEEeCCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3679999999999999999999999 999999775 789999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+|+|.
T Consensus 300 ~V~~Akp~ 307 (578)
T TIGR01648 300 EVTLAKPV 307 (578)
T ss_pred EEEEccCC
Confidence 99999874
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=1.9e-12 Score=117.31 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...+|||+|||+ .+|+++|+.+|++||.|.+|+++.+ . +|||||+|.+.++|..|+..|||..|. |++|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~--~g~afV~f~~~~~A~~Ai~~lng~~l~----g~~l 343 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----K--KETALIEMADPYQAQLALTHLNGVKLF----GKPL 343 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----C--CCEEEEEECCHHHHHHHHHHhCCCEEC----CceE
Confidence 457999999998 6999999999999999999999875 2 799999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+++..
T Consensus 344 ~v~~s~~~ 351 (481)
T TIGR01649 344 RVCPSKQQ 351 (481)
T ss_pred EEEEcccc
Confidence 99998654
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=9.2e-12 Score=102.58 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=73.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+|||-||+++.+|..|..+|++||.|..|++++| .|.++ +|||||.+.+-++|..||..|||+.+. +|.+.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkC--KGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQ 351 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKC--KGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQ 351 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccc--cceeEEEecchHHHHHHHHHhcCcccc----ceEEE
Confidence 357999999999999999999999999999999999 67887 999999999999999999999999998 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|.+-.
T Consensus 352 VsFKt 356 (360)
T KOG0145|consen 352 VSFKT 356 (360)
T ss_pred EEEec
Confidence 98754
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2e-12 Score=110.79 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=72.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+||||.+++.+.|+.|+..|.+||+|++|.+.+| .||+. +|||||+|+-++.|+.|++.|||..+. ||.|+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kH--KgFAFVEYEvPEaAqLAlEqMNg~mlG----GRNiK 186 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKH--KGFAFVEYEVPEAAQLALEQMNGQMLG----GRNIK 186 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccc--cceEEEEEeCcHHHHHHHHHhcccccc----Ccccc
Confidence 467999999999999999999999999999999999 89996 999999999999999999999999888 99999
Q ss_pred EEe
Q 029074 96 ARA 98 (199)
Q Consensus 96 v~~ 98 (199)
|..
T Consensus 187 Vgr 189 (544)
T KOG0124|consen 187 VGR 189 (544)
T ss_pred ccC
Confidence 983
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=110.63 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+.+|.|.|||+.+..++|+.+|++||.|..|.|++...|+- +|||||.|....+|..|++.+||..|. ||+|-|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl--cGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAV 190 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL--CGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAV 190 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc--cceEEEEEeeHHHHHHHHHhccCceec----CceeEE
Confidence 57899999999999999999999999999999998866764 899999999999999999999999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
.||.+
T Consensus 191 DWAV~ 195 (678)
T KOG0127|consen 191 DWAVD 195 (678)
T ss_pred eeecc
Confidence 99975
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=2.1e-11 Score=78.56 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=49.9
Q ss_pred HHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEec
Q 029074 34 IRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 34 L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a 99 (199)
|..+|++||.|.++.+..+. +|+|||+|.+.++|..|+..|||..+. |++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~------~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK------RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS------TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999997641 389999999999999999999999999 999999875
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2e-11 Score=82.45 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=53.1
Q ss_pred HHHHHHHhc----cCCceEEEE-EeeC-CC--CCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 31 EPVIRTALD----QFGNVKNVQ-FIPN-YT--EFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 31 e~~L~~~F~----~fG~V~~v~-v~~d-~t--g~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+++|+..|+ +||.|.+|. ++.+ .+ |.+ +|||||+|.+.++|..|+..|||..+. ||+|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~--rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHK--RGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCC--cEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888888 999999995 6665 45 777 999999999999999999999999999 999876
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=8.1e-12 Score=103.24 Aligned_cols=84 Identities=20% Similarity=0.379 Sum_probs=77.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..|+||||-|...-+|++++.+|..||.|.+|.+++...|.+ +|||||.|.+..+|+.||..|+|..-+ .|....|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~s--KGCAFVKf~s~~eAqaAI~aLHgSqTm-pGASSSLV 94 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNS--KGCAFVKFSSHAEAQAAINALHGSQTM-PGASSSLV 94 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCC--CCceEEEeccchHHHHHHHHhcccccC-CCCccceE
Confidence 468999999999999999999999999999999999988998 999999999999999999999999765 67778899
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|++|..+
T Consensus 95 VK~ADTd 101 (371)
T KOG0146|consen 95 VKFADTD 101 (371)
T ss_pred EEeccch
Confidence 9998764
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=8.6e-12 Score=104.00 Aligned_cols=71 Identities=21% Similarity=0.465 Sum_probs=66.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
-+|||||||..+++.+|+.+|.+||+|..|.|+ +.||||..+++..|..||..|||+.|+ |..|.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---------KNYgFVHiEdktaaedairNLhgYtLh----g~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---------KNYGFVHIEDKTAAEDAIRNLHGYTLH----GVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---------cccceEEeecccccHHHHhhcccceec----ceEEEEE
Confidence 479999999999999999999999999999998 669999999999999999999999999 9999999
Q ss_pred eccc
Q 029074 98 AAEV 101 (199)
Q Consensus 98 ~a~~ 101 (199)
.++.
T Consensus 70 aSks 73 (346)
T KOG0109|consen 70 ASKS 73 (346)
T ss_pred eccc
Confidence 8764
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.24 E-value=1.1e-11 Score=110.73 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=71.2
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEe
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARA 98 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~ 98 (199)
||||||.+.++++.|+.+|.+||.|..|.+..| .||.+ +|||||+|.+.++|.+|+..|||+++- ||.|+|..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~s--kgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~ 354 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRS--KGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSV 354 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccc--cCcceEEEecHHHHHHHHHHhccceec----CceEEEEE
Confidence 999999999999999999999999999999999 69998 999999999999999999999998888 99999876
Q ss_pred c
Q 029074 99 A 99 (199)
Q Consensus 99 a 99 (199)
.
T Consensus 355 v 355 (549)
T KOG0147|consen 355 V 355 (549)
T ss_pred e
Confidence 5
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=4.9e-11 Score=106.57 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=71.4
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHh-----CC-CceeccCC
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSL-----HE-FPFMMSGM 90 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~l-----ng-~~~~~~g~ 90 (199)
+||||.|||+++|+++|...|++||.|..+.++.+ .||.| +|.|||.|.+...|+.||... .| ..+.
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~s--kGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~---- 366 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHS--KGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD---- 366 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCc--ccceEEEeccHHHHHHHHHhcCccCCCceEEEe----
Confidence 79999999999999999999999999999999999 99998 999999999999999999976 23 4455
Q ss_pred CcceEEEeccc
Q 029074 91 PRPVRARAAEV 101 (199)
Q Consensus 91 gr~l~v~~a~~ 101 (199)
||.|.|..|.+
T Consensus 367 GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 367 GRLLKVTLAVT 377 (678)
T ss_pred ccEEeeeeccc
Confidence 99999998865
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=4.6e-11 Score=96.46 Aligned_cols=78 Identities=23% Similarity=0.462 Sum_probs=70.5
Q ss_pred CCEEEecCCCCCCCHHHHHH----HhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 17 KRTVYLDNLSPQVTEPVIRT----ALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~----~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
..||||.||+..+..++|+. +|++||.|.+|.... |.+. +|-|||.|.+.+.|..|+..|+|++|. |+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~Km--RGQA~VvFk~~~~As~A~r~l~gfpFy----gK 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKM--RGQAFVVFKETEAASAALRALQGFPFY----GK 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCc--cCceEEEecChhHHHHHHHHhcCCccc----Cc
Confidence 35999999999999999988 999999999887653 5664 999999999999999999999999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
++++.+|+..
T Consensus 81 ~mriqyA~s~ 90 (221)
T KOG4206|consen 81 PMRIQYAKSD 90 (221)
T ss_pred hhheecccCc
Confidence 9999999753
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=5.1e-11 Score=108.06 Aligned_cols=74 Identities=15% Similarity=0.326 Sum_probs=61.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccC------------CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQF------------GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~f------------G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
....|+|||||||+.+|+++|.++|.++ +.|..+.+ +.. +|||||+|.+.++|..|+ .||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~--kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKE--KNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCC--CCEEEEEeCCHHHHhhhh-cCC
Confidence 3456899999999999999999999985 23333433 344 899999999999999999 599
Q ss_pred CCceeccCCCcceEEEec
Q 029074 82 EFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 82 g~~~~~~g~gr~l~v~~a 99 (199)
|..|. |++|+|...
T Consensus 244 g~~~~----g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYS----NVFLKIRRP 257 (509)
T ss_pred CeEee----CceeEecCc
Confidence 99998 999998743
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=9.9e-11 Score=102.77 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=72.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
...|||.||++.++...|..+|+.||.|.+|++.++..| + +|| ||+|++++.|..||+.+||..+. +++|.|
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~--kg~-FV~f~~e~~a~~ai~~~ng~ll~----~kki~v 147 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-S--KGY-FVQFESEESAKKAIEKLNGMLLN----GKKIYV 147 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-c--eee-EEEeCCHHHHHHHHHHhcCcccC----CCeeEE
Confidence 344999999999999999999999999999999999888 5 999 99999999999999999999999 999999
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
.....+
T Consensus 148 g~~~~~ 153 (369)
T KOG0123|consen 148 GLFERK 153 (369)
T ss_pred eeccch
Confidence 877543
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=6.4e-11 Score=103.62 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=67.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.-|||.||+..+|++.|+++|++||.|.+|+.+ +.||||.|.+.++|.+|++.+||+.+. |.+|.|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---------rDYaFVHf~eR~davkAm~~~ngkeld----G~~iEvt 326 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---------RDYAFVHFAEREDAVKAMKETNGKELD----GSPIEVT 326 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc---------cceeEEeecchHHHHHHHHHhcCceec----CceEEEE
Confidence 359999999999999999999999999999876 559999999999999999999999999 9999999
Q ss_pred ecccc
Q 029074 98 AAEVE 102 (199)
Q Consensus 98 ~a~~e 102 (199)
.|+|.
T Consensus 327 LAKP~ 331 (506)
T KOG0117|consen 327 LAKPV 331 (506)
T ss_pred ecCCh
Confidence 99874
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.15 E-value=3.4e-11 Score=102.38 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=114.0
Q ss_pred HHhhhccCCCEEEecCCCCCCCHHHHHHHhccCCceE--------EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 029074 9 YAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVK--------NVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSL 80 (199)
Q Consensus 9 ~~~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~--------~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~l 80 (199)
+..++.++...|||.|||.++|-+++.++|++||.|. .|++.++..|.. +|=|++.|-..+++..|+..|
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l--KGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL--KGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc--cCceEEEeecccHHHHHHHHh
Confidence 5667788999999999999999999999999999886 478888877987 999999999999999999999
Q ss_pred CCCceeccCCCcceEEEecccccCCCC--------CCCCCCcc------cccccCCCCchhHHHH-----HHHHHHHHhH
Q 029074 81 HEFPFMMSGMPRPVRARAAEVEMFDDH--------PAKPGQRI------QFQWLDPNDPDFEVAQ-----RLKRLARKHA 141 (199)
Q Consensus 81 ng~~~~~~g~gr~l~v~~a~~e~~~~~--------p~~p~~~~------~~r~~~~~~~~~~~~~-----~~k~l~~~~~ 141 (199)
++..|. |+.|+|..|+-++-... +..+-+++ .+.|++..+ +-..++ -++.++
T Consensus 204 De~~~r----g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~-~~sk~r~~~tVi~kn~F---- 274 (382)
T KOG1548|consen 204 DEDELR----GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRD-DPSKARADRTVILKNMF---- 274 (382)
T ss_pred Cccccc----CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCcc-ccccccCCcEEEeeecC----
Confidence 999999 99999999975442221 11111111 134443321 000000 011111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhh
Q 029074 142 AEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIMSD 182 (199)
Q Consensus 142 ~e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~~~ 182 (199)
-...++....|-...++.|...|.||+++++|++.
T Consensus 275 ------tp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~ 309 (382)
T KOG1548|consen 275 ------TPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY 309 (382)
T ss_pred ------CHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe
Confidence 12233344456677889999999999999999986
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.14 E-value=7e-11 Score=92.68 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEE-EEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNV-QFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v-~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||||.+.+++..|...|+.||.+.+. .++++ .||.+ +|||||.|.+.+.+.+|+..|||.-+. +|++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~--~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~i 169 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNP--KGFGFINYASFEASDAAIGSMNGQYLC----NRPI 169 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCC--CCCeEEechhHHHHHHHHHHhccchhc----CCce
Confidence 4579999999999999999999999987663 57777 88988 999999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.-
T Consensus 170 tv~ya~k 176 (203)
T KOG0131|consen 170 TVSYAFK 176 (203)
T ss_pred EEEEEEe
Confidence 9999864
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.4e-10 Score=95.94 Aligned_cols=81 Identities=10% Similarity=0.215 Sum_probs=74.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....+|||-+||....+.+|...|-+||.|.+.++..| .|..| ++||||.|.++.+|+.||..|||+.|. -+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQS--KCFGFVSfDNp~SaQaAIqAMNGFQIG----MKR 356 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQS--KCFGFVSFDNPASAQAAIQAMNGFQIG----MKR 356 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccc--cceeeEecCCchhHHHHHHHhcchhhh----hhh
Confidence 44578999999999999999999999999999999999 88898 999999999999999999999999988 788
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|..-+|
T Consensus 357 LKVQLKRP 364 (371)
T KOG0146|consen 357 LKVQLKRP 364 (371)
T ss_pred hhhhhcCc
Confidence 88876655
No 63
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-10 Score=99.57 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=73.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.-|||..|+|.+|.++|.-+|+.||.|.+|.|++| .||-+ ..||||+|++.+++++|.-.|++..+. .|.|.|
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds--LqyaFiEFen~escE~AyFKMdNvLID----DrRIHV 313 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS--LQYAFIEFENKESCEQAYFKMDNVLID----DRRIHV 313 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch--hheeeeeecchhhHHHHHhhhcceeec----cceEEe
Confidence 45999999999999999999999999999999999 99998 999999999999999999999999998 999999
Q ss_pred Eecc
Q 029074 97 RAAE 100 (199)
Q Consensus 97 ~~a~ 100 (199)
.++.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 8874
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2e-10 Score=106.04 Aligned_cols=80 Identities=19% Similarity=0.412 Sum_probs=73.6
Q ss_pred hhhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 11 AFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 11 ~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
++-...+||||||+|+..+++.+|..+|+.||.|.+|.++.+ +|||||.+.+..+|.+|+..|+...+.
T Consensus 415 d~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-------R~cAfI~M~~RqdA~kalqkl~n~kv~---- 483 (894)
T KOG0132|consen 415 DHISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-------RGCAFIKMVRRQDAEKALQKLSNVKVA---- 483 (894)
T ss_pred cceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-------CceeEEEEeehhHHHHHHHHHhccccc----
Confidence 344566899999999999999999999999999999999864 999999999999999999999999999
Q ss_pred CcceEEEeccc
Q 029074 91 PRPVRARAAEV 101 (199)
Q Consensus 91 gr~l~v~~a~~ 101 (199)
++.|++.||..
T Consensus 484 ~k~Iki~Wa~g 494 (894)
T KOG0132|consen 484 DKTIKIAWAVG 494 (894)
T ss_pred ceeeEEeeecc
Confidence 99999999963
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.07 E-value=3.7e-10 Score=98.86 Aligned_cols=78 Identities=15% Similarity=0.334 Sum_probs=73.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhc-cCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALD-QFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~-~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.|.+||.|||+++.+.+|+.+|. +.|.|..|.++.|..|++ +|||.|+|.+++.+++|++.||.+.+. ||+|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~--rGcavVEFk~~E~~qKa~E~lnk~~~~----GR~l~ 117 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKA--RGCAVVEFKDPENVQKALEKLNKYEVN----GRELV 117 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCc--CCceEEEeeCHHHHHHHHHHhhhcccc----CceEE
Confidence 46799999999999999999995 679999999999999998 999999999999999999999999999 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|+-..
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98543
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=8.1e-10 Score=94.92 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=71.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.+|||..+.++.++++|+++|.-||.|.+|.+.++.|+.. ++||||++|.+..+...||..||-+.+. |.-+||.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~-HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVG 285 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG-HKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVG 285 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC-ccceeeEEeccccchHHHhhhcchhhcc----cceEecc
Confidence 5799999999999999999999999999999999977664 5999999999999999999999988887 9999998
Q ss_pred ecc
Q 029074 98 AAE 100 (199)
Q Consensus 98 ~a~ 100 (199)
.+.
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 764
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=7.5e-10 Score=99.62 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=74.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...|+|||.+|+..+...+|+.+|++||.|+-++|+++...+. .++|+||+|.+..+|..||..|+-.+|. ||.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPG-aRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPG-ARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCC-cceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 4568899999999999999999999999999999999932221 2899999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
.|..++.+
T Consensus 478 SVEkaKNE 485 (940)
T KOG4661|consen 478 SVEKAKNE 485 (940)
T ss_pred eeeecccC
Confidence 99988753
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.3e-09 Score=95.82 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=68.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
..|||| +.||+..|.++|+++|+|.++++++|. + | -|||||.|.++.+|++|+..||...+. |+++++-
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-s--lgy~yvnf~~~~da~~A~~~~n~~~~~----~~~~rim 70 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-S--LGYAYVNFQQPADAERALDTMNFDVLK----GKPIRIM 70 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-c--cceEEEecCCHHHHHHHHHHcCCcccC----CcEEEee
Confidence 368999 999999999999999999999999998 5 7 999999999999999999999999999 9999999
Q ss_pred eccc
Q 029074 98 AAEV 101 (199)
Q Consensus 98 ~a~~ 101 (199)
|+..
T Consensus 71 ~s~r 74 (369)
T KOG0123|consen 71 WSQR 74 (369)
T ss_pred hhcc
Confidence 8753
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=5.6e-10 Score=95.56 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=73.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|+|.++++.|+..|++||.|.+|.+++| .++++ +||+||+|.+.+....++..- -+.+. |+.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rs--rgFgfv~f~~~~~v~~vl~~~-~h~~d----gr~v 77 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRS--RGFGFVTFATPEGVDAVLNAR-THKLD----GRSV 77 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCc--ccccceecCCCcchheeeccc-ccccC----Cccc
Confidence 5789999999999999999999999999999999999 88888 999999999988888887543 33466 8999
Q ss_pred EEEecccccCCCCC
Q 029074 95 RARAAEVEMFDDHP 108 (199)
Q Consensus 95 ~v~~a~~e~~~~~p 108 (199)
.+..|.+......+
T Consensus 78 e~k~av~r~~~~~~ 91 (311)
T KOG4205|consen 78 EPKRAVSREDQTKV 91 (311)
T ss_pred cceeccCccccccc
Confidence 99988775544433
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=6.6e-10 Score=92.86 Aligned_cols=74 Identities=18% Similarity=0.392 Sum_probs=69.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
.+.+.+|+||||++.++..+|+..|.+||+|..|.++ ++|+||.|...++|..|++.|||..|. |++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---------kdy~fvh~d~~eda~~air~l~~~~~~----gk~ 141 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---------KDYAFVHFDRAEDAVEAIRGLDNTEFQ----GKR 141 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee---------cceeEEEEeeccchHHHHhcccccccc----cce
Confidence 4566789999999999999999999999999999997 789999999999999999999999999 999
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
++|..+.
T Consensus 142 m~vq~st 148 (346)
T KOG0109|consen 142 MHVQLST 148 (346)
T ss_pred eeeeeec
Confidence 9998764
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.92 E-value=5e-09 Score=86.73 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+.+|+|.|||+.|++++|+++|..||.+..+-+-.|..|.+ .|.|-|.|...++|..|++.+||..+. |+++++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s--~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~ 156 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS--LGTADVSFNRRDDAERAVKKYNGVALD----GRPMKI 156 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC--CccceeeecchHhHHHHHHHhcCcccC----Cceeee
Confidence 36799999999999999999999999999999989999998 999999999999999999999999888 999998
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
....+.
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 876543
No 72
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=5.5e-10 Score=91.78 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=109.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
..|||.||+..++.+.+.+.|++||+|.+..++.|+.++. .+-++|+|.....|..|...++..-|.++..++|+.|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~--t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP--TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc--cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 4699999999999999999999999999999999988887 89999999999999999999977767777788998888
Q ss_pred ecccccCCC-------CC---CCCCCcccccccCCCCchhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 029074 98 AAEVEMFDD-------HP---AKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLK 167 (199)
Q Consensus 98 ~a~~e~~~~-------~p---~~p~~~~~~r~~~~~~~~~~~~~~~k~l~~~~~~e~~~~~k~~~~~~~~l~~~q~e~l~ 167 (199)
+.......+ .+ ..+.+...++++.++..++++..+||.+... .+||++.++
T Consensus 110 P~eq~~d~~G~~~k~~~~~~~~~~e~~~p~r~a~~g~fe~e~~~~~k~l~~m-------------------ekq~qd~v~ 170 (275)
T KOG0115|consen 110 PMEQPDDNDGGPEKGGGGGPSGPKEREQPPRFAQQGSFEVEYGSRWKMLGGM-------------------EKQGQDQVD 170 (275)
T ss_pred hhhccCCCCcchhhcCCCCCCCCccccCCchhccccccccccCccccccccc-------------------cccCCcccc
Confidence 765322111 11 1234445689999999999999999999877 577777777
Q ss_pred HhHhh
Q 029074 168 QNYKK 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
+++|.
T Consensus 171 ~n~ke 175 (275)
T KOG0115|consen 171 RNIKE 175 (275)
T ss_pred cccch
Confidence 77665
No 73
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=8.9e-09 Score=87.87 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=67.4
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC-CceeccCCC
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHE-FPFMMSGMP 91 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng-~~~~~~g~g 91 (199)
++.+-++||||+|...+++.+|+..|.+||.|.++++... +|||||+|.+...|+.|....-. ..+. |
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-------~~CAFv~ftTR~aAE~Aae~~~n~lvI~----G 292 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-------KGCAFVTFTTREAAEKAAEKSFNKLVIN----G 292 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-------cccceeeehhhHHHHHHHHhhcceeeec----c
Confidence 4566789999999999999999999999999999998753 78999999999999999876544 3344 8
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
+.|.|.|..+
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999999887
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=3.3e-09 Score=97.37 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.+|.|.|||+..+-.+++.+|+.||.|.+|+++.- .|+..++|||||+|-++.+|.+|++.|.+..|. ||.+.+.
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLE 688 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLE 688 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhccccee----chhhhee
Confidence 57999999999999999999999999999999987 444334999999999999999999999999999 8888888
Q ss_pred eccc
Q 029074 98 AAEV 101 (199)
Q Consensus 98 ~a~~ 101 (199)
||..
T Consensus 689 wA~~ 692 (725)
T KOG0110|consen 689 WAKS 692 (725)
T ss_pred hhcc
Confidence 8753
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.82 E-value=5.4e-09 Score=89.57 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=71.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++||||+||+++++.+++..|.+||.|..+.++.| .+..+ +||+||.|.+++.+..++. ..-+.|+ ++.|.|
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~--rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vev 170 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP--RGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEV 170 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc--ccceeeEeccccccceecc-cceeeec----CceeeE
Confidence 47999999999999999999999999999999999 77776 9999999999999988875 6777788 999999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
..|.|..
T Consensus 171 krA~pk~ 177 (311)
T KOG4205|consen 171 KRAIPKE 177 (311)
T ss_pred eeccchh
Confidence 9998754
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=4.4e-08 Score=90.08 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=68.6
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCC----CCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTE----FRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg----~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
|||.||++.+|.+.|...|...|.|.++.|.....+ .| .|||||+|.++++|+.|+..|+|..+. |+.|.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lS--mGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~ 591 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLS--MGFGFVEFAKPESAQAALKALQGTVLD----GHKLE 591 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccc--cceeEEEecCHHHHHHHHHHhcCceec----CceEE
Confidence 999999999999999999999999999988765322 24 699999999999999999999999999 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|+++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99886
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=2e-08 Score=82.98 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=76.2
Q ss_pred hhhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 11 AFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 11 ~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
...+...+.+||||+.+.+|.+.+...|..||.|..+.+++| .+|.+ +||+||+|.+.+.++.|+. |||..+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~--k~~~yvef~~~~~~~~ay~-l~gs~i~--- 168 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHP--KGFAYVEFSSYELVEEAYK-LDGSEIP--- 168 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCc--ceeEEEecccHhhhHHHhh-cCCcccc---
Confidence 355667789999999999999999999999999999999999 66776 9999999999999999998 9999999
Q ss_pred CCcceEEEeccc
Q 029074 90 MPRPVRARAAEV 101 (199)
Q Consensus 90 ~gr~l~v~~a~~ 101 (199)
++.+.|.+.+.
T Consensus 169 -~~~i~vt~~r~ 179 (231)
T KOG4209|consen 169 -GPAIEVTLKRT 179 (231)
T ss_pred -cccceeeeeee
Confidence 99999887653
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.7e-08 Score=82.01 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
..+|||+||+.+.+.+|..+|..||.+.+|.+. .||+||+|.+..+|..||..+||.+|. +-.+.|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---------~gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve 68 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---------NGFGFVEFEDPRDADDAVHDLDGKELC----GERLVVE 68 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---------cccceeccCchhhhhcccchhcCceec----ceeeeee
Confidence 469999999999999999999999999998874 799999999999999999999999998 6668898
Q ss_pred ecccc
Q 029074 98 AAEVE 102 (199)
Q Consensus 98 ~a~~e 102 (199)
+++..
T Consensus 69 ~~r~~ 73 (216)
T KOG0106|consen 69 HARGK 73 (216)
T ss_pred ccccc
Confidence 88753
No 79
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=5.4e-09 Score=84.40 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=69.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.|||||+|+...|+++.|.++|-+-|+|.+|.|..+..+.. + ||||.|.++....-|++.+||..+. ++++.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~--k-Fa~v~f~~E~sv~~a~~L~ng~~l~----~~e~q~ 81 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ--K-FAYVFFPNENSVQLAGQLENGDDLE----EDEEQR 81 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC--c-eeeeecccccchhhhhhhcccchhc----cchhhc
Confidence 48999999999999999999999999999998887766664 5 9999999999999999999999998 888877
Q ss_pred Eec
Q 029074 97 RAA 99 (199)
Q Consensus 97 ~~a 99 (199)
.+-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 654
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.71 E-value=3.4e-08 Score=90.91 Aligned_cols=91 Identities=19% Similarity=0.314 Sum_probs=75.4
Q ss_pred HhhhccCC--CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCC----CCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 10 AAFLEKVK--RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYT----EFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 10 ~~f~~~~~--rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~t----g~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
-.|+.-.+ ++||||||++.++++.|-..|+.||+|.+++++.-.+ ... +-||||-|-+..+|++|+..|+|.
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~--r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRE--RNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccc--cccceeeehhhhhHHHHHHHhcce
Confidence 34555333 4599999999999999999999999999998876522 233 789999999999999999999999
Q ss_pred ceeccCCCcceEEEecccccCCC
Q 029074 84 PFMMSGMPRPVRARAAEVEMFDD 106 (199)
Q Consensus 84 ~~~~~g~gr~l~v~~a~~e~~~~ 106 (199)
.++ ++++++.|+++-.++.
T Consensus 243 iv~----~~e~K~gWgk~V~ip~ 261 (877)
T KOG0151|consen 243 IVM----EYEMKLGWGKAVPIPN 261 (877)
T ss_pred eee----eeeeeeccccccccCC
Confidence 999 9999999986544443
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=1.8e-08 Score=82.89 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.-+||+|.|...++.+.|..+|.+|-.....++++| .||++ +||+||.|.+..++..|+..|||.-.. .|+++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKS--kgygfVSf~~pad~~rAmrem~gkyVg----srpik 263 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKS--KGYGFVSFRDPADYVRAMREMNGKYVG----SRPIK 263 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhcccccccccccc--ccceeeeecCHHHHHHHHHhhcccccc----cchhH
Confidence 467999999999999999999999999999999999 99999 999999999999999999999999877 77777
Q ss_pred EEe
Q 029074 96 ARA 98 (199)
Q Consensus 96 v~~ 98 (199)
++.
T Consensus 264 lRk 266 (290)
T KOG0226|consen 264 LRK 266 (290)
T ss_pred hhh
Confidence 663
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=6.4e-07 Score=64.30 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccC--CceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQF--GNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~f--G~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
++||-|.|||...|.+.|.+++... |...-+.++.| .++.. .|||||.|.+++.|..-.+.++|..+......+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N--~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCN--LGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCc--eEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 4689999999999999998888653 66777888888 66664 9999999999999999999999999875555667
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
+.|.+|+
T Consensus 79 c~i~yAr 85 (97)
T PF04059_consen 79 CEISYAR 85 (97)
T ss_pred EEEehhH
Confidence 7777775
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.54 E-value=3.2e-07 Score=81.53 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=64.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+|||+|||++++..+|+++|.+||.|+...|..- ..++. .+||||+|.+...++.||.+- ++.++ ++.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~--~~fgFV~f~~~~~~~~~i~As---p~~ig--~~kl~ 360 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKN--PCFGFVEFENAAAVQNAIEAS---PLEIG--GRKLN 360 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCc--CceEEEEEeecchhhhhhhcC---ccccC--CeeEE
Confidence 345999999999999999999999999999887665 45564 599999999999999999864 44433 88888
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|+--++
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 875544
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=6.2e-08 Score=87.30 Aligned_cols=148 Identities=13% Similarity=0.166 Sum_probs=102.3
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
-++|||+||..+++..+.++...||.+....++.| .+|.+ +||||.+|.++.....|+..|||..+. ++.+.|
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~s--kg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvv 363 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNS--KGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVV 363 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccc--cceeeeeeeCCcchhhhhcccchhhhc----CceeEe
Confidence 46999999999999999999999999999999999 88887 999999999999999999999999988 999999
Q ss_pred EecccccCCCCCCCCCCcccccccCCCCchhHHHHHHHHHHHHhHHHHHHHH----HHhHHHHHHHHHHHHHHHHHhHhh
Q 029074 97 RAAEVEMFDDHPAKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEASFVL----KEQLEQEEQLANQQEETLKQNYKK 172 (199)
Q Consensus 97 ~~a~~e~~~~~p~~p~~~~~~r~~~~~~~~~~~~~~~k~l~~~~~~e~~~~~----k~~~~~~~~l~~~q~e~l~~~~~~ 172 (199)
..|.+......+..+-...++..++.. ..-.-....+.++|. ...|. .++-.+..-|.++..|.|
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~----------~~q~~g~~t~Vl~L~n~Vt~deLk-dd~EyeeIlEdvr~ec~k 432 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLL----------MTQMAGIPTEVLCLTNVVTPDELK-DDEEYEEILEDVRTECAK 432 (500)
T ss_pred ehhhccchhccccCCccccccccchhh----------hcccCCCcchhhhhhhcCCHHHhc-chHHHHHHHHHHHHHhcc
Confidence 988764322222111000011111100 000000111122111 12222 233367788999999999
Q ss_pred hhhHHhhhhh
Q 029074 173 YETLEGIMSD 182 (199)
Q Consensus 173 ~~~~~~~~~~ 182 (199)
|+.+.+|..-
T Consensus 433 ~g~v~~v~ip 442 (500)
T KOG0120|consen 433 FGAVRSVEIP 442 (500)
T ss_pred cCceeEEecC
Confidence 9999888654
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1.1e-06 Score=71.38 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=66.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
|||||.+||.++..-+|..+|..|-.-+.+.+-.. ..++. .+-+|||+|.+...|..|+..|||..|. .-.+..|++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~-~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~~stLhi 112 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQV-CKPVAFATFTSHQFALAAMNALNGVRFD-PETGSTLHI 112 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcc-ccceEEEEecchHHHHHHHHHhcCeeec-cccCceeEe
Confidence 89999999999999999999999866565555433 33322 2579999999999999999999999987 334678899
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
..|+..
T Consensus 113 ElAKSN 118 (284)
T KOG1457|consen 113 ELAKSN 118 (284)
T ss_pred eehhcC
Confidence 888743
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.48 E-value=3.2e-07 Score=80.71 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
..+|||.|||.+.|+..|+.-|..||.|..+.++. .|++ +| .|.|.++++|+.|+..|+|..+. ||.|.|
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~Gks--kG--VVrF~s~edAEra~a~Mngs~l~----Gr~I~V 605 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKS--KG--VVRFFSPEDAERACALMNGSRLD----GRNIKV 605 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCc--cc--eEEecCHHHHHHHHHHhccCccc----Cceeee
Confidence 45799999999999999999999999999888754 5776 66 89999999999999999999999 999999
Q ss_pred Ee
Q 029074 97 RA 98 (199)
Q Consensus 97 ~~ 98 (199)
.+
T Consensus 606 ~y 607 (608)
T KOG4212|consen 606 TY 607 (608)
T ss_pred ee
Confidence 86
No 87
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=4.5e-07 Score=81.64 Aligned_cols=71 Identities=15% Similarity=0.338 Sum_probs=63.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|+|-|||..|++++|..+|+.||.|..|+.-++ . +|..||+|-+..+|+.|++.|++..+. |+.+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~--~~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~ 142 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----K--RGIVFVEFYDVRDAERALKALNRREIA----GKRI 142 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----c--CceEEEEEeehHhHHHHHHHHHHHHhh----hhhh
Confidence 45689999999999999999999999999998765432 2 789999999999999999999999988 7777
Q ss_pred E
Q 029074 95 R 95 (199)
Q Consensus 95 ~ 95 (199)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 6
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.25 E-value=3.2e-07 Score=82.46 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=76.3
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
+|+..||||+--|+..+++-+|.++|+.+|.|.+|+++.| .++.+ +|.|||+|.+......|| .|.|..++ |
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rs--kgi~Yvef~D~~sVp~ai-aLsGqrll----g 247 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRS--KGIAYVEFCDEQSVPLAI-ALSGQRLL----G 247 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhh--cceeEEEEecccchhhHh-hhcCCccc----C
Confidence 5677899999999999999999999999999999999999 88887 999999999999999998 69999999 9
Q ss_pred cceEEEecccc
Q 029074 92 RPVRARAAEVE 102 (199)
Q Consensus 92 r~l~v~~a~~e 102 (199)
-||.|.....+
T Consensus 248 ~pv~vq~sEae 258 (549)
T KOG0147|consen 248 VPVIVQLSEAE 258 (549)
T ss_pred ceeEecccHHH
Confidence 99999876544
No 89
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.15 E-value=1.7e-05 Score=65.64 Aligned_cols=67 Identities=27% Similarity=0.363 Sum_probs=57.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CC--------CCCCCce----EEEEEecCHHHHHHHHHHhCCCc
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YT--------EFRNIPH----CALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~t--------g~s~~~G----~afVef~~~~~A~~Ai~~lng~~ 84 (199)
--||+++||+.+...-|+++|++||.|-+|.+-.. .+ |.+ ++ -|.|+|.+...|..+...|||.+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n--~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGN--YKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCC--ccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34999999999999999999999999999998776 44 222 22 26799999999999999999998
Q ss_pred ee
Q 029074 85 FM 86 (199)
Q Consensus 85 ~~ 86 (199)
+.
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 77
No 90
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.6e-05 Score=69.08 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=52.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC--CCCCCCCce---EEEEEecCHHHHHHHHHHhC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN--YTEFRNIPH---CALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d--~tg~s~~~G---~afVef~~~~~A~~Ai~~ln 81 (199)
..+++||||+||++++|+.|...|.+||.+. |.+... ..+..-.+| |+|+.|+++..+...+.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 4568999999999999999999999999864 566632 222211367 99999999999998877664
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.96 E-value=3.4e-05 Score=67.58 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=66.6
Q ss_pred CCEEEecCCC-CCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLS-PQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp-~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
...|.|.||. ..+|.+.|..+|+-||.|.+|++..+. +.-|+|.|.+...|+.|+..|+|..+. |++|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk------kd~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lr 366 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK------KDNALIQMSDGQQAQLAMEHLEGHKLY----GKKLR 366 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC------CcceeeeecchhHHHHHHHHhhcceec----CceEE
Confidence 3458888886 469999999999999999999999862 456999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.+++.
T Consensus 367 vt~SKH 372 (492)
T KOG1190|consen 367 VTLSKH 372 (492)
T ss_pred EeeccC
Confidence 998863
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.93 E-value=8.8e-06 Score=70.03 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceE--------EEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVK--------NVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~--------~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
.-+|||-+||..+++++|...|.++|.|. .|.+-+| .|+.+ +|-|.|.|++...|+.||.-+++..|+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~--KGeatvS~~D~~~akaai~~~agkdf~- 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAP--KGEATVSYEDPPAAKAAIEWFAGKDFC- 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCc--CCceeeeecChhhhhhhhhhhcccccc-
Confidence 45899999999999999999999999886 3567777 89998 999999999999999999999999999
Q ss_pred cCCCcceEEEecc
Q 029074 88 SGMPRPVRARAAE 100 (199)
Q Consensus 88 ~g~gr~l~v~~a~ 100 (199)
+.+++|..|.
T Consensus 143 ---gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ---GNTIKVSLAE 152 (351)
T ss_pred ---CCCchhhhhh
Confidence 8899888774
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.92 E-value=9.9e-06 Score=68.99 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred cCCCEEE-ecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 15 KVKRTVY-LDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlf-VgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++| |++|+..++.++|+..|..+|.|..+++..+ .+|.+ +|||+|.|.....+..++.. ....+. ++
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~--kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~ 254 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDS--KGFAYVDFSAGNSKKLALND-QTRSIG----GR 254 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccch--hhhhhhhhhhchhHHHHhhc-ccCccc----Cc
Confidence 3445666 9999999999999999999999999999998 88888 99999999999999999876 666666 89
Q ss_pred ceEEEecccccCCC
Q 029074 93 PVRARAAEVEMFDD 106 (199)
Q Consensus 93 ~l~v~~a~~e~~~~ 106 (199)
++++....+....+
T Consensus 255 ~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 255 PLRLEEDEPRPKSD 268 (285)
T ss_pred ccccccCCCCcccc
Confidence 99999877654433
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=64.32 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=52.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.||||.||.+.++|++|+.+|+.|.....+++- ...| ...||++|++.+.|..|+..|.|..+-
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g----~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGG----MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCC----cceEeecHHHHHHHHHHHHHhhcceec
Confidence 369999999999999999999999765555542 2233 458999999999999999999998654
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.78 E-value=6e-05 Score=64.72 Aligned_cols=77 Identities=13% Similarity=0.231 Sum_probs=61.2
Q ss_pred EEEecCCCCCCCHHH----H--HHHhccCCceEEEEEeeC-CCCCCCCceE--EEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 19 TVYLDNLSPQVTEPV----I--RTALDQFGNVKNVQFIPN-YTEFRNIPHC--ALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 19 tlfVgnLp~~vte~~----L--~~~F~~fG~V~~v~v~~d-~tg~s~~~G~--afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
-+||-+||+.+..++ | .++|+|||.|.+|.|-+. .+..+. .+. .||+|.+.++|..||...+|..+.
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst-~~h~gvYITy~~kedAarcIa~vDgs~~D--- 191 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNST-ASHAGVYITYSTKEDAARCIAEVDGSLLD--- 191 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccc-cccceEEEEecchHHHHHHHHHhcccccc---
Confidence 489999999887765 3 489999999999877554 222221 232 399999999999999999999998
Q ss_pred CCcceEEEecc
Q 029074 90 MPRPVRARAAE 100 (199)
Q Consensus 90 ~gr~l~v~~a~ 100 (199)
||.|++.+-.
T Consensus 192 -Gr~lkatYGT 201 (480)
T COG5175 192 -GRVLKATYGT 201 (480)
T ss_pred -CceEeeecCc
Confidence 9999998764
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.71 E-value=0.00015 Score=50.54 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=47.9
Q ss_pred CEEEecCCCCCCCHHH----HHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 18 RTVYLDNLSPQVTEPV----IRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 18 rtlfVgnLp~~vte~~----L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
..|||.|||...+... |+.++..+| .|..|. .|.|+|.|.+.+.|..|.+.|+|-... |+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----------~~tAilrF~~~~~A~RA~KRmegEdVf----G~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----------GGTAILRFPNQEFAERAQKRMEGEDVF----GN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SS----SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----------CCEEEEEeCCHHHHHHHHHhhcccccc----cc
Confidence 3599999999988765 556777786 565541 578999999999999999999999888 99
Q ss_pred ceEEEecc
Q 029074 93 PVRARAAE 100 (199)
Q Consensus 93 ~l~v~~a~ 100 (199)
.|.|++..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999874
No 97
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00013 Score=66.26 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred hhhccCCCEEEecCCCCCCC------HHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 11 AFLEKVKRTVYLDNLSPQVT------EPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 11 ~f~~~~~rtlfVgnLp~~vt------e~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
--.+-....|+|.|+|---. ...|..+|+++|.|....++.+..|.+ +||.|++|.+..+|+.|++.+||+.
T Consensus 52 ~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt--kG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 52 VTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT--KGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred CccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe--eeEEEEEecChhhHHHHHHhcccce
Confidence 33445557799999985322 235678999999999999998844445 9999999999999999999999998
Q ss_pred eeccCCCcceEEEe
Q 029074 85 FMMSGMPRPVRARA 98 (199)
Q Consensus 85 ~~~~g~gr~l~v~~ 98 (199)
|. ......|..
T Consensus 130 ld---knHtf~v~~ 140 (698)
T KOG2314|consen 130 LD---KNHTFFVRL 140 (698)
T ss_pred ec---ccceEEeeh
Confidence 86 245555553
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.61 E-value=0.00027 Score=63.23 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=59.0
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEe
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARA 98 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~ 98 (199)
-|-+.+|||.+|+++|..+|+.++ |.++.+.+ .+|+. .|-|||+|.+.++++.|++. +-..+. .|-|.|-.
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~--sGeA~Ve~~seedv~~Alkk-dR~~mg----~RYIEVf~ 82 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRP--SGEAYVEFTSEEDVEKALKK-DRESMG----HRYIEVFT 82 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCc--CcceEEEeechHHHHHHHHh-hHHHhC----CceEEEEc
Confidence 367789999999999999999995 77755544 46887 99999999999999999973 433344 67788877
Q ss_pred ccc
Q 029074 99 AEV 101 (199)
Q Consensus 99 a~~ 101 (199)
+.+
T Consensus 83 ~~~ 85 (510)
T KOG4211|consen 83 AGG 85 (510)
T ss_pred cCC
Confidence 644
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.58 E-value=0.00017 Score=52.51 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=38.0
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
.|.|.+++..++-++|+.+|++||.|..|.+... ..-|+|-|.+++.|+.|+..+...
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CCEEEEEECCcchHHHHHHHHHhc
Confidence 4788889999999999999999999988877542 346899999999999999877544
No 100
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=6.4e-05 Score=64.84 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=59.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCC--ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFG--NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG--~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
-++|||||-|++|+++|.+++...| .+.++++..+ ..|.| +|||+|...+.....+.++.|-...+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQS--KG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQS--KGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcc--cceEEEEecchHHHHHHHHhcccceec
Confidence 3699999999999999999988877 5667778778 78898 999999999999999999988888877
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=6e-05 Score=61.45 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
....+.|.|++..+++.+|...|.++|.+..... . .+++||+|+...+|..|+..++|..+. ++.|.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~--~~~~~v~Fs~~~da~ra~~~l~~~~~~----~~~l~ 164 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------R--RNFAFVEFSEQEDAKRALEKLDGKKLN----GRRIS 164 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------h--ccccceeehhhhhhhhcchhccchhhc----Cceee
Confidence 3456899999999999999999999999844333 1 789999999999999999999999999 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
+...-
T Consensus 165 ~~~~~ 169 (216)
T KOG0106|consen 165 VEKNS 169 (216)
T ss_pred ecccC
Confidence 95443
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00028 Score=45.00 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=42.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV 77 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai 77 (199)
++.|-|.+.+++..+..|+ .|.+||.|.++.+.. . .-+.+|.|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~-----~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPE-----S--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCC-----C--CcEEEEEECCHHHHHhhC
Confidence 3678899999887766555 888999999987752 1 568999999999999884
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.48 E-value=0.00049 Score=56.05 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=62.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.....+|+.|||..++.+.+..+|.+|+....++++.. . +|.|||+|.+...|..|...+.|..+- - ...+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~---~---~~iAfve~~~d~~a~~a~~~lq~~~it--~-~~~m 214 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP---R---SGIAFVEFLSDRQASAAQQALQGFKIT--K-KNTM 214 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC---C---CceeEEecchhhhhHHHhhhhccceec--c-CceE
Confidence 34567999999999999999999999999999998753 2 789999999999999999999988654 1 3455
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
++.++
T Consensus 215 ~i~~a 219 (221)
T KOG4206|consen 215 QITFA 219 (221)
T ss_pred Eeccc
Confidence 55544
No 104
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=0.00014 Score=64.22 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=62.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC-ceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF-PFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~-~~~~~g~gr~l~v 96 (199)
.++|+|||++.++.++|+.+|+.--.-.+-.++. + .||+||.+.+...|..|++.++|. ++. |+++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~----k---~gyafvd~pdq~wa~kaie~~sgk~elq----Gkr~e~ 70 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV----K---SGYAFVDCPDQQWANKAIETLSGKVELQ----GKRQEV 70 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee----e---cceeeccCCchhhhhhhHHhhchhhhhc----Cceeec
Confidence 3689999999999999999997641111111221 1 799999999999999999999998 344 777777
Q ss_pred EecccccCCCCCCCCCCcccccccCC
Q 029074 97 RAAEVEMFDDHPAKPGQRIQFQWLDP 122 (199)
Q Consensus 97 ~~a~~e~~~~~p~~p~~~~~~r~~~~ 122 (199)
....+.. ...+++++|.++|
T Consensus 71 ~~sv~kk------qrsrk~Qirnipp 90 (584)
T KOG2193|consen 71 EHSVPKK------QRSRKIQIRNIPP 90 (584)
T ss_pred cchhhHH------HHhhhhhHhcCCH
Confidence 7654421 1234466676655
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.29 E-value=0.00069 Score=60.71 Aligned_cols=76 Identities=16% Similarity=0.047 Sum_probs=59.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEE-EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKN-VQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~-v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
-.|-+.+||+.+|+++|.++|+..-.|.. +.++.+..|++ .|-|||.|++.+.|++|+..-. ..+. .|-|.|
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~--tGEAfVqF~sqe~ae~Al~rhr-e~iG----hRYIEv 176 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRP--TGEAFVQFESQESAEIALGRHR-ENIG----HRYIEV 176 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCc--ccceEEEecCHHHHHHHHHHHH-Hhhc----cceEEe
Confidence 35888999999999999999998865555 55666788887 9999999999999999987533 3344 566766
Q ss_pred Eecc
Q 029074 97 RAAE 100 (199)
Q Consensus 97 ~~a~ 100 (199)
-.+.
T Consensus 177 F~Ss 180 (510)
T KOG4211|consen 177 FRSS 180 (510)
T ss_pred ehhH
Confidence 6553
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00074 Score=61.33 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=56.9
Q ss_pred HHHHHhccCCceEEEEEeeC-CCC---CCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecccccCCC
Q 029074 33 VIRTALDQFGNVKNVQFIPN-YTE---FRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDD 106 (199)
Q Consensus 33 ~L~~~F~~fG~V~~v~v~~d-~tg---~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e~~~~ 106 (199)
+++.-++.||.|.+|.+.++ ..+ .. .|..||+|.+.++|+.|...|+|..|. +|.|...+..++.+..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G--~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYydeDkY~~ 496 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPG--TGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYDEDKYHA 496 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCC--cccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecCHHHhhc
Confidence 45667789999999999887 433 23 577899999999999999999999999 9999999887765543
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0012 Score=59.47 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=55.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhc-cCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALD-QFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~-~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
.+||||||+||.-++.++|..+|. -||.|.-+-|=.| +-+-+ +|-|-|+|.+..+-.+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP--kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP--KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC--CCcceeeecccHHHHHHHhh
Confidence 458999999999999999999998 7999999888777 66666 99999999999999999874
No 108
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00061 Score=60.19 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=57.6
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC------CCCCCC------CceEEEEEecCHHHHHHHHHHh
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN------YTEFRN------IPHCALVEMENLKQAKDVVTSL 80 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d------~tg~s~------~~G~afVef~~~~~A~~Ai~~l 80 (199)
+++..|+|.+-|||.+-.-+.|..+|+.+|.|..|+++.- -.|.++ .+-+|+|+|+..+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3468899999999999989999999999999999998643 222220 1457999999999999999988
Q ss_pred CCC
Q 029074 81 HEF 83 (199)
Q Consensus 81 ng~ 83 (199)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 543
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.02 E-value=0.00039 Score=65.84 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+.+|||.|.|+..|.++++.+++.+|++.+.+++....|++ +|.|+|.|.++.++..++...++..++ .+.+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp--kg~a~v~y~~ea~~s~~~~s~d~~~~r----E~~~~v 809 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP--KGKARVDYNTEADASRKVASVDVAGKR----ENNGEV 809 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc--ccceeccCCCcchhhhhcccchhhhhh----hcCccc
Confidence 45799999999999999999999999999999888889998 999999999999999998887777666 555555
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
....|
T Consensus 810 ~vsnp 814 (881)
T KOG0128|consen 810 QVSNP 814 (881)
T ss_pred cccCC
Confidence 54444
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.99 E-value=0.0053 Score=53.07 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=60.2
Q ss_pred cCCCEEEecCCCC----CCC-------HHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 15 KVKRTVYLDNLSP----QVT-------EPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 15 ~~~rtlfVgnLp~----~vt-------e~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
+..++|.+.|+=. ..+ .++|++-..+||.|.+|.|.-. .+ .|.+-|.|.+.+.|..||+.|+|.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hP--dGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HP--DGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CC--CceeEEEeCChHHHHHHHHHhcCe
Confidence 4457899999721 223 2456677899999999877532 23 789999999999999999999999
Q ss_pred ceeccCCCcceEEEec
Q 029074 84 PFMMSGMPRPVRARAA 99 (199)
Q Consensus 84 ~~~~~g~gr~l~v~~a 99 (199)
.|. ||.|.....
T Consensus 338 ~fd----gRql~A~i~ 349 (382)
T KOG1548|consen 338 WFD----GRQLTASIW 349 (382)
T ss_pred eec----ceEEEEEEe
Confidence 999 999998854
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.95 E-value=0.0013 Score=62.77 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=66.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+.+|+|+|++++.-..|...|..||.|..|.+ ..| .-||+|.|++...|+.|+..|-|.+| ||..++++
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy---~hg----q~yayi~yes~~~aq~a~~~~rgap~--G~P~~r~r 524 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY---RHG----QPYAYIQYESPPAAQAATHDMRGAPL--GGPPRRLR 524 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec---ccC----CcceeeecccCccchhhHHHHhcCcC--CCCCcccc
Confidence 4466999999999999999999999999987654 233 34999999999999999999999875 57788999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.+|.+.
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998653
No 112
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.94 E-value=0.00062 Score=59.87 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=55.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++-|.++|||++++|++|..++.+||.|..+.+++. +.-||++|.+.++|..-+.-....+-.+ -+++|.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-------knQAflem~d~~sAvtmv~~y~~~~p~l--r~~~~y 97 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-------KNQAFLEMADEESAVTMVNYYTSVTPVL--RGQPIY 97 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-------chhhhhhhcchhhhhheeecccccCccc--cCccee
Confidence 4567999999999999999999999999999888753 4479999999888877443332222111 156666
Q ss_pred EEec
Q 029074 96 ARAA 99 (199)
Q Consensus 96 v~~a 99 (199)
+.++
T Consensus 98 iq~s 101 (492)
T KOG1190|consen 98 IQYS 101 (492)
T ss_pred ehhh
Confidence 6654
No 113
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.86 E-value=0.0016 Score=57.06 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=64.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC--CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN--YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d--~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...|-|.||++.+|.+.+..+|+-.|.|..+.|..+ ....+.+.-.|||-|.+...+..| +.|.++.|. ++.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfv----dral 81 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFV----DRAL 81 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceee----eeeE
Confidence 347999999999999999999999999999999875 222111367899999998888777 568888888 8988
Q ss_pred EEEecc
Q 029074 95 RARAAE 100 (199)
Q Consensus 95 ~v~~a~ 100 (199)
.|.++-
T Consensus 82 iv~p~~ 87 (479)
T KOG4676|consen 82 IVRPYG 87 (479)
T ss_pred EEEecC
Confidence 887664
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.78 E-value=0.0054 Score=57.38 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=71.1
Q ss_pred HHhhhccCCCEEEecCCCCCCCHHHHHHHhccCCce-EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 9 YAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNV-KNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 9 ~~~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V-~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
+..|...-.|-|-+.|+|+.++-++|-++|..|-.+ .+|.+-+++.|.. .|-|-|-|++.++|..|...+++..|.
T Consensus 859 ~~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~p--TGe~mvAfes~~eAr~A~~dl~~~~i~- 935 (944)
T KOG4307|consen 859 MELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVP--TGECMVAFESQEEARRASMDLDGQKIR- 935 (944)
T ss_pred HHhcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCc--ccceeEeecCHHHHHhhhhccccCccc-
Confidence 455555555679999999999999999999999654 3566666788887 999999999999999999999999999
Q ss_pred cCCCcceEEEe
Q 029074 88 SGMPRPVRARA 98 (199)
Q Consensus 88 ~g~gr~l~v~~ 98 (199)
.|.|.+..
T Consensus 936 ---nr~V~l~i 943 (944)
T KOG4307|consen 936 ---NRVVSLRI 943 (944)
T ss_pred ---ceeEEEEe
Confidence 88888763
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.54 E-value=0.013 Score=51.36 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=64.6
Q ss_pred CCEEEecCCCCC-CCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQ-VTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~-vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..-+.|-+|... ++-+.|-.+|-.||.|.+|++++.. .|-|.|++.+....++|+..||+..+. |..|.
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk------~gtamVemgd~~aver~v~hLnn~~lf----G~kl~ 356 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK------PGTAMVEMGDAYAVERAVTHLNNIPLF----GGKLN 356 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc------cceeEEEcCcHHHHHHHHHHhccCccc----cceEE
Confidence 345778888875 5567899999999999999999742 677999999999999999999999988 88998
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|..++.+
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 8877643
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.47 E-value=0.013 Score=51.23 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred EEecCCC--CCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 20 VYLDNLS--PQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 20 lfVgnLp--~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
|.+.-|. +-+|-+.|..+....|.|.+|.|.+. +|- -|.|+|++.+.|++|...|||..|. ..=+.|+|+
T Consensus 123 Ll~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV-----QAmVEFdsv~~AqrAk~alNGADIY--sGCCTLKIe 194 (494)
T KOG1456|consen 123 LLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV-----QAMVEFDSVEVAQRAKAALNGADIY--SGCCTLKIE 194 (494)
T ss_pred EEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce-----eeEEeechhHHHHHHHhhccccccc--ccceeEEEE
Confidence 4444443 56889999999999999999988764 443 6999999999999999999999876 335789999
Q ss_pred eccccc
Q 029074 98 AAEVEM 103 (199)
Q Consensus 98 ~a~~e~ 103 (199)
+|+|+.
T Consensus 195 yAkP~r 200 (494)
T KOG1456|consen 195 YAKPTR 200 (494)
T ss_pred ecCcce
Confidence 999864
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.41 E-value=0.0042 Score=54.42 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCc-eEE--EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGN-VKN--VQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~-V~~--v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
++-+|-+.+||+..+-++|-.+|+.|-. |.- |.++.|..|++ .|-|||+|.+.+.|..|...++.+... .|
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP--SGeAFIqm~nae~a~aaaqk~hk~~mk----~R 352 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRP--SGEAFIQMRNAERARAAAQKCHKKLMK----SR 352 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc--ChhhhhhhhhhHHHHHHHHHHHHhhcc----cc
Confidence 3557999999999999999999999974 333 78888888887 999999999999999999988877554 77
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
-|.|-.+..+
T Consensus 353 YiEvfp~S~e 362 (508)
T KOG1365|consen 353 YIEVFPCSVE 362 (508)
T ss_pred eEEEeeccHH
Confidence 8887766543
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.13 E-value=0.02 Score=41.31 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=49.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEE-EeeCC------CCCCCCceEEEEEecCHHHHHHHHHHhCCCceecc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQ-FIPNY------TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMS 88 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~-v~~d~------tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~ 88 (199)
..+-|.|=+.|+. ....+.+.|++||.|.+.. +.++. ...+ ...+-.|.|.++.+|.+|+. -||..+.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~-~~NWi~I~Y~~~~~A~rAL~-~NG~i~~-- 79 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS-GGNWIHITYDNPLSAQRALQ-KNGTIFS-- 79 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-C-CTTEEEEEESSHHHHHHHHT-TTTEEET--
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC-CCCEEEEECCCHHHHHHHHH-hCCeEEc--
Confidence 3456888889988 4455667899999998764 11110 0111 25689999999999999996 6888776
Q ss_pred CCCc-ceEEEecc
Q 029074 89 GMPR-PVRARAAE 100 (199)
Q Consensus 89 g~gr-~l~v~~a~ 100 (199)
|. -+.|.+++
T Consensus 80 --g~~mvGV~~~~ 90 (100)
T PF05172_consen 80 --GSLMVGVKPCD 90 (100)
T ss_dssp --TCEEEEEEE-H
T ss_pred --CcEEEEEEEcH
Confidence 43 45566664
No 119
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.94 E-value=0.0039 Score=51.83 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=49.8
Q ss_pred HHHHhc-cCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEeccc
Q 029074 34 IRTALD-QFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEV 101 (199)
Q Consensus 34 L~~~F~-~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~ 101 (199)
+..-|+ +||.|+.+.|..+-.-. ..|=++|.|..+++|++|+..|||..+. |+||.+.....
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~h--l~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDH--LVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchh--hhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeecCc
Confidence 333444 89999998776652222 3788999999999999999999999999 99999987643
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.92 E-value=0.021 Score=50.17 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHhhhccCCC-EEEecCCCCCCCHHHHHHHhccC----CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 8 EYAAFLEKVKR-TVYLDNLSPQVTEPVIRTALDQF----GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 8 ~~~~f~~~~~r-tlfVgnLp~~vte~~L~~~F~~f----G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
+.+.|..+-.. .|-..+||++.++.++..+|.+- |.++.|-+++...|+. .|-|||.|..+++|+.|+..
T Consensus 151 e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrp--TGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 151 EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRP--TGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCc--ccceEEEecCHHHHHHHHHH
Confidence 34555554443 47788999999999999999743 3456777777778887 99999999999999999874
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.86 E-value=0.0038 Score=53.66 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=61.3
Q ss_pred CEEEecCCCCCCCHHHH---HHHhccCCceEEEEEeeCCC--CCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 18 RTVYLDNLSPQVTEPVI---RTALDQFGNVKNVQFIPNYT--EFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L---~~~F~~fG~V~~v~v~~d~t--g~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.-+||-+|+..+..+.+ .+.|++||.|.+|.+-.+.+ ..+....-++|+|...++|..||...+|.... |+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d----g~ 153 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD----GR 153 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh----hh
Confidence 44899999987765544 47899999999998877632 11112334899999999999999999999888 88
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
.+++.+..+
T Consensus 154 ~lka~~gtt 162 (327)
T KOG2068|consen 154 ALKASLGTT 162 (327)
T ss_pred hhHHhhCCC
Confidence 877776653
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.83 E-value=0.0049 Score=58.95 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=59.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
...+|||+|||+..+++.+|+.+|..+|.|.+|.+-+-.-+.- .-||||.|.+...+-.|...+.+..+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e--sa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE--SAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc--cchhhhhhhccccCcccchhhcCCccc
Confidence 3468999999999999999999999999999998865433332 468999999999999999988887665
No 123
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.76 E-value=0.054 Score=43.31 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=61.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.-.|.|.+||+.-++.+|+.....-|.|.-..+.+ -|.+.|+|...++.+-|+..|....+.-.|+.--++|
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--------ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 34699999999999999999999999998887765 4688999999999999999999887764444444455
Q ss_pred Ee
Q 029074 97 RA 98 (199)
Q Consensus 97 ~~ 98 (199)
..
T Consensus 187 ~~ 188 (241)
T KOG0105|consen 187 RG 188 (241)
T ss_pred cc
Confidence 43
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.73 E-value=0.031 Score=47.56 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=52.9
Q ss_pred HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecccccC
Q 029074 32 PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMF 104 (199)
Q Consensus 32 ~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e~~ 104 (199)
+++.+-.++||.|.+|.|..+.+-+-.-.---||+|+..++|.+|+-.|||.-|. ||.++..+-.-+.|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheeccHHhh
Confidence 4567888999999998776653322111234699999999999999999999999 99998887654443
No 125
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.67 E-value=0.043 Score=42.19 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=50.9
Q ss_pred cCCCEEEecCCCC------CCCH---HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 15 KVKRTVYLDNLSP------QVTE---PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 15 ~~~rtlfVgnLp~------~vte---~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
....||.|.-+.+ ...+ ..|-+.|++||.|.=++++ .+.-+|+|.+-..|-+|+. ++|..+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---------~~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---------GDTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---------TTCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---------CCeEEEEECccHHHHHHHc-cCCcEE
Confidence 3446776665552 2222 2567888999998888876 3456899999999999986 999999
Q ss_pred eccCCCcceEEEecccc
Q 029074 86 MMSGMPRPVRARAAEVE 102 (199)
Q Consensus 86 ~~~g~gr~l~v~~a~~e 102 (199)
. |+.|+|+.-.|+
T Consensus 95 ~----g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 N----GRTLKIRLKTPD 107 (146)
T ss_dssp T----TEEEEEEE----
T ss_pred C----CEEEEEEeCCcc
Confidence 9 999999977654
No 126
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.60 E-value=0.0097 Score=56.72 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=64.6
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEec
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a 99 (199)
.++-|.+-..+..-|..+|++||.|.+++.+++ -..|.|+|.+.+.|..|.++++|.+.-+.|+ |.+|.+|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-------~N~alvs~~s~~sai~a~dAl~gkevs~~g~--Ps~V~~a 371 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-------LNMALVSFSSVESAILALDALQGKEVSVTGA--PSRVSFA 371 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-------ccchhhhhHHHHHHHHhhhhhcCCcccccCC--ceeEEec
Confidence 445566667888899999999999999988776 5578999999999999999999999876655 4888888
Q ss_pred ccccCCCCC
Q 029074 100 EVEMFDDHP 108 (199)
Q Consensus 100 ~~e~~~~~p 108 (199)
++..+.+.|
T Consensus 372 k~~~~~ep~ 380 (1007)
T KOG4574|consen 372 KTLPMYEPP 380 (1007)
T ss_pred cccccccCC
Confidence 765444433
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.50 E-value=0.0012 Score=62.61 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=54.3
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
++||.||++.+.+++|...|+.+|.+..+++.-. .++.. +|+|+|+|..++.+.+||....+.
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~--rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRF--RGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccc--ccceeeEeecCCchhhhhhhhhhh
Confidence 6899999999999999999999999888776633 56776 999999999999999999754444
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.48 E-value=0.013 Score=54.07 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhc-cCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALD-QFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~-~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
++-.|||.||-.-.|.-.|+.+++ ..|.|... || | + ++..|||.|.+.++|.+.+.+|||..+. .+.++-|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D---k--IKShCyV~yss~eEA~atr~AlhnV~WP-~sNPK~L 514 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D---K--IKSHCYVSYSSVEEAAATREALHNVQWP-PSNPKHL 514 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H---H--hhcceeEecccHHHHHHHHHHHhccccC-CCCCcee
Confidence 445699999999999999999999 55666665 33 2 1 2678999999999999999999999886 4557888
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8888754
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.31 E-value=0.037 Score=43.93 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=52.8
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhcc-CCce---EEEEEeeC--CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceecc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQ-FGNV---KNVQFIPN--YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMS 88 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~-fG~V---~~v~v~~d--~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~ 88 (199)
....+|-|.+|||.+|++++.+.++. +|.- ..+..... ....+ ...-|||.|.+.+++..-...++|+.|. .
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~-~~SRaYi~F~~~~~~~~F~~~~~g~~F~-D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPP-TYSRAYINFKNPEDLLEFRDRFDGHVFV-D 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS---EEEEEEESSCHHHHHHHHHCTTEEEE--
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCC-cceEEEEEeCCHHHHHHHHHhcCCcEEE-C
Confidence 34568999999999999999988877 6655 33432222 22222 2567999999999999999999999886 2
Q ss_pred CCC--cceEEEecc
Q 029074 89 GMP--RPVRARAAE 100 (199)
Q Consensus 89 g~g--r~l~v~~a~ 100 (199)
..| .+..|.+|.
T Consensus 83 ~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 83 SKGNEYPAVVEFAP 96 (176)
T ss_dssp TTS-EEEEEEEE-S
T ss_pred CCCCCcceeEEEcc
Confidence 222 234555554
No 130
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.14 E-value=0.1 Score=36.37 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=41.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
.||--.+|...-..+|..+|+.||.|. |.++. -..|||...+.+.|..++..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~--------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIN--------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEEC--------TTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEc--------CCcEEEEeecHHHHHHHHHHhc
Confidence 355555999999999999999999974 66664 3469999999999999998875
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.79 E-value=0.12 Score=34.00 Aligned_cols=57 Identities=11% Similarity=0.215 Sum_probs=44.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccC---CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQF---GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSL 80 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~f---G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~l 80 (199)
...-+|+|.++. .++.++|+.+|..| ....+|.++-|. .|=|.|.+...|.+|+..|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt--------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT--------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC--------cEEEEECCHHHHHHHHHcC
Confidence 345679999985 58888999999988 235688888762 3558999999999998754
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.18 E-value=0.5 Score=34.63 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=49.8
Q ss_pred EEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.+.+...|+.++.++|..+.+.+- .|..+++++|.+.. +-.+.+.|.+...|..-...+||.+|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pn---rymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPN---RYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCc---eEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 355555666666677766666653 57788898874432 778999999999999999999999987
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.44 E-value=0.3 Score=37.52 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=44.8
Q ss_pred ccCCCEEEecCCCCCCCH-HHH---HHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 029074 14 EKVKRTVYLDNLSPQVTE-PVI---RTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHE 82 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte-~~L---~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng 82 (199)
+..-.||.|.=|...+.. +++ ..-++.||+|.+|.+. | +.-|.|.|.+..+|-.|+.++..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----G----rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----G----RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----C----CceEEEEehhhHHHHHHHHhhcC
Confidence 344467888766665543 344 4556889999998774 3 56899999999999999988764
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.50 E-value=0.31 Score=46.10 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=58.7
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEE-EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKN-VQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~-v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.-..-.|||-.||..+++..+-..|...-.|++ |.+.+-.+++- ++-|||.|..++++..|...-+-+ .+ + .|
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~--~~~afv~F~~~~a~~~a~~~~~k~-y~-G--~r 504 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLL--RPAAFVAFIHPTAPLTASSVKTKF-YP-G--HR 504 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccc--cchhhheeccccccchhhhccccc-cc-C--ce
Confidence 334467999999999999999999988777777 66666678876 899999999988888876532222 22 1 45
Q ss_pred ceEEE
Q 029074 93 PVRAR 97 (199)
Q Consensus 93 ~l~v~ 97 (199)
-|+|.
T Consensus 505 ~irv~ 509 (944)
T KOG4307|consen 505 IIRVD 509 (944)
T ss_pred EEEee
Confidence 56665
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.22 E-value=0.37 Score=38.52 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=45.7
Q ss_pred CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC--CCceeccCCCcceEEEecccc
Q 029074 30 TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH--EFPFMMSGMPRPVRARAAEVE 102 (199)
Q Consensus 30 te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln--g~~~~~~g~gr~l~v~~a~~e 102 (199)
....|+.+|..|+.+.....+.. -+-..|.|.+.+.|..|...|+ +..++ |..+++-++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-------FRRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-------TTEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-------CCEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcccc
Confidence 34789999999999888877653 5567899999999999999999 99999 999999988653
No 136
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.36 E-value=0.94 Score=30.10 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=39.3
Q ss_pred CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 28 QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 28 ~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.++-++++.-+..|+- .+ |..|. .|| ||.|.+..+|++|....+|..+.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~------tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR------TGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC------CEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 5788999999999974 23 33343 444 89999999999999999999887
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.53 E-value=0.22 Score=45.00 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCCC-CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecccccC
Q 029074 26 SPQV-TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMF 104 (199)
Q Consensus 26 p~~v-te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e~~ 104 (199)
|+.. +.++|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|- ..++..|. +|.|+|.|-.|...
T Consensus 381 ~~glnt~a~ln~hfA~fG~i~n~qv~~~-------~~~a~vTF~t~aeag~a~-~s~~avln----nr~iKl~whnps~~ 448 (526)
T KOG2135|consen 381 PFGLNTIADLNPHFAQFGEIENIQVDYS-------SLHAVVTFKTRAEAGEAY-ASHGAVLN----NRFIKLFWHNPSPV 448 (526)
T ss_pred CCCCchHhhhhhhhhhcCccccccccCc-------hhhheeeeeccccccchh-ccccceec----CceeEEEEecCCcc
Confidence 4443 45789999999999999887432 346889999999997664 47888899 99999999887555
Q ss_pred CCCCCCC
Q 029074 105 DDHPAKP 111 (199)
Q Consensus 105 ~~~p~~p 111 (199)
...|.-|
T Consensus 449 tn~pav~ 455 (526)
T KOG2135|consen 449 TNIPAVP 455 (526)
T ss_pred cCcccCc
Confidence 5554443
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.97 E-value=2.3 Score=28.50 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhccCCc-----eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEec
Q 029074 27 PQVTEPVIRTALDQFGN-----VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 27 ~~vte~~L~~~F~~fG~-----V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a 99 (199)
..++..+|..++..-+. |-+|.+. ..|+||+-.. +.|..++..|++..+. |++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---------~~~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---------DNFSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----------SS-EEEEE-T-T-HHHHHHHHTT--SS----S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---------eeEEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEEEC
Confidence 35777788888876643 5567774 5689999876 6899999999999999 999999865
No 139
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=88.62 E-value=0.11 Score=42.61 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=62.6
Q ss_pred HhhhccCCCEEEecC----CCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 10 AAFLEKVKRTVYLDN----LSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 10 ~~f~~~~~rtlfVgn----Lp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
..|+.-..++++.|+ |...++++.+...|++-|++..+++.++..|+. +.++|+++-.....-.+.....+.+.
T Consensus 73 ~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rn--rn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 73 DLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRN--RNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCc--cCccchhhhhhhcCcHHhhhhcccCc
Confidence 346667789999999 999999999999999999999999988866775 88999998877777777777776655
Q ss_pred e
Q 029074 86 M 86 (199)
Q Consensus 86 ~ 86 (199)
.
T Consensus 151 ~ 151 (267)
T KOG4454|consen 151 F 151 (267)
T ss_pred C
Confidence 4
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=88.13 E-value=0.26 Score=42.06 Aligned_cols=68 Identities=10% Similarity=-0.051 Sum_probs=57.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
..+.|+|++.+.+.+.+...++..+|.+..+.+... ....+ +|++.+.|...+.+..|+...-.+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~s--k~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSS--KGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhcccccc--ccceeeccccHHHHHHHHHhhhccccc
Confidence 567999999999999999999999999888888776 67777 999999999999999999754434444
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=1.1 Score=41.23 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=56.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhc-cCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALD-QFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~-~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++-|.|+|..-|...|...-. ..|+-.-+.++.|...+. +.|||||.|-+++.+....+++||+.+.-=...+...+
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkc-NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKC-NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEecccccccc-ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 4577777777766666655532 356666677777743444 38999999999999999999999998752223444555
Q ss_pred Eecc
Q 029074 97 RAAE 100 (199)
Q Consensus 97 ~~a~ 100 (199)
.+|+
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 5554
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.44 E-value=1.9 Score=38.87 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=58.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.+.|+|-.+|..+|.-+|-.+...+- .|.++++++|..+. +-..++.|.+..+|..--..+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn---rymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN---RYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc---eEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999888764 68899999964433 678999999999999999999999986
No 143
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.53 E-value=0.38 Score=45.08 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=51.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.-+|||||+...+..+.++.+...+|-|.++.. --|||.+|.....+..|+..++-..+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr----------~~fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR----------DKFGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhh----------hhhcccchhhHHHHHHHHHHhcccCCC
Confidence 358999999999999999999999999877643 238999999999999999988876655
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=85.78 E-value=0.38 Score=42.56 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=55.9
Q ss_pred HHHHHhhhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 6 EAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 6 ~~~~~~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
.+...+.++.- ||++|++|+..+...++-+.|..+|.|...++.- |.. .-+|-++|........|+. ++|..+
T Consensus 141 ~~~A~kleeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~--s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 141 QAAAKKLEEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSR--SSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred HhhhhhhHHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCC--CcchhhhHhhhhhHHHHHH-hcchhh
Confidence 34455555554 9999999999999999999999999988766542 332 4567799998888888876 566554
Q ss_pred e
Q 029074 86 M 86 (199)
Q Consensus 86 ~ 86 (199)
.
T Consensus 214 k 214 (479)
T KOG4676|consen 214 K 214 (479)
T ss_pred h
Confidence 4
No 145
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.90 E-value=3 Score=38.67 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=45.0
Q ss_pred CE-EEecCCCCCCCHHHHHHHhcc--CCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 029074 18 RT-VYLDNLSPQVTEPVIRTALDQ--FGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSL 80 (199)
Q Consensus 18 rt-lfVgnLp~~vte~~L~~~F~~--fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~l 80 (199)
|+ |.+..||..+..++++.+|.. +-.+.+|.+..+ -+ .||+|++..+|+.|...|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~n-WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DN-WYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------Cc-eEEEeecchhHHHHHHHH
Confidence 44 778899999999999999965 778889988764 22 489999999999996543
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=83.75 E-value=0.045 Score=48.72 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=61.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
+|++-|.|+|+...++.|..++.+||.|..|..+.-.+- .-..-|+|...+.+..||..++|..++ ...+++
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~e----n~~~k~ 151 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLE----NQHLKV 151 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhh----hhhhhc
Confidence 467899999999999999999999999999876432111 112247899999999999999999998 888888
Q ss_pred Eecc
Q 029074 97 RAAE 100 (199)
Q Consensus 97 ~~a~ 100 (199)
.+..
T Consensus 152 ~YiP 155 (584)
T KOG2193|consen 152 GYIP 155 (584)
T ss_pred ccCc
Confidence 7653
No 147
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.44 E-value=4.4 Score=34.87 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=43.8
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
=|-|=++|+.... .|...|++||.|.+..... + -.|-+|.|.+..+|++|+. -||..|.
T Consensus 199 WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~--n-----gNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 199 WVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPS--N-----GNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred eEEEeccCccchh-HHHHHHHhhCeeeeeecCC--C-----CceEEEEecchhHHHHhhh-hcCeeec
Confidence 3556677776554 4556899999998765432 1 5588999999999999997 5777655
No 148
>PF08075 NOPS: NOPS (NUC059) domain; InterPro: IPR012975 This domain is found C-terminal to 1 or 2 IPR000504 from INTERPRO domains [] in NONA and PSP1 proteins.; PDB: 3SDE_B.
Probab=81.00 E-value=1.3 Score=28.02 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.6
Q ss_pred CcccccccCCCCchhHHHHHHH
Q 029074 113 QRIQFQWLDPNDPDFEVAQRLK 134 (199)
Q Consensus 113 ~~~~~r~~~~~~~~~~~~~~~k 134 (199)
|....||..|++.+|++++|||
T Consensus 31 Re~~PRFA~pgsfE~eyg~RWK 52 (52)
T PF08075_consen 31 REQGPRFAQPGSFEFEYGMRWK 52 (52)
T ss_dssp CTS-SEE--TTSHHHHHHHHHH
T ss_pred hhcCCCcCCCCCcchhhccccC
Confidence 4456799999999999999997
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.81 E-value=6.5 Score=36.70 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCEEEecCCCCC-CCHHHHHHHhccC----CceEEEEEeeCC-----------CCCC----------------------
Q 029074 16 VKRTVYLDNLSPQ-VTEPVIRTALDQF----GNVKNVQFIPNY-----------TEFR---------------------- 57 (199)
Q Consensus 16 ~~rtlfVgnLp~~-vte~~L~~~F~~f----G~V~~v~v~~d~-----------tg~s---------------------- 57 (199)
..++|-|-|+.|. +...+|.-+|+.| |.|.+|.|.... +|++
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3467999999986 7778998888876 588888765432 2330
Q ss_pred ------------C-CceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecc
Q 029074 58 ------------N-IPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAE 100 (199)
Q Consensus 58 ------------~-~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~ 100 (199)
+ .--||.|+|.+.+.|......|+|..|.-+ +-.+-+++..
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS--~~~~DLRFIP 306 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS--ANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc--cceeeeeecC
Confidence 0 013799999999999999999999998722 3445555554
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.80 E-value=2.5 Score=31.20 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=29.7
Q ss_pred EEEecCCCCC---------CCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHH
Q 029074 19 TVYLDNLSPQ---------VTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQA 73 (199)
Q Consensus 19 tlfVgnLp~~---------vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A 73 (199)
++.|-|+|.. ++.+.|...|+.|.++ +++.+.+..|. .|+++|.|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh---~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGH---TGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEE---EEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCC---cEEEEEEECCChHH
Confidence 4566676543 4668899999999886 46666776676 89999999765443
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.93 E-value=5.6 Score=34.07 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCce-EEEEEeeCCCCCCCCceEEEEEecCHH
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNV-KNVQFIPNYTEFRNIPHCALVEMENLK 71 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V-~~v~v~~d~tg~s~~~G~afVef~~~~ 71 (199)
..-||++|||.++.-.+|+..+...|.+ .++.+ .|. .|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~---~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGH---FGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecC---CcceeEecCCcc
Confidence 3459999999999999999999888743 33333 344 788999997643
No 152
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.50 E-value=28 Score=29.83 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=46.5
Q ss_pred CEEEecCCCCC------------CCHHHHHHHhccCCceEEEEEee-C-----CCCCC---CCceEEE---------EEe
Q 029074 18 RTVYLDNLSPQ------------VTEPVIRTALDQFGNVKNVQFIP-N-----YTEFR---NIPHCAL---------VEM 67 (199)
Q Consensus 18 rtlfVgnLp~~------------vte~~L~~~F~~fG~V~~v~v~~-d-----~tg~s---~~~G~af---------Vef 67 (199)
-|||+.+||-. -+++.|+.+|..||.|..|.++. | .+|+. +..||+| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57999998852 35678999999999998887653 2 23432 0144543 333
Q ss_pred cCHHHHHHHHHHhCCCceeccCCCc
Q 029074 68 ENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 68 ~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
-.-..-..|+..|.|..+.--|.++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ 254 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDG 254 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCc
Confidence 3333344667777777666444444
No 153
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.94 E-value=25 Score=23.21 Aligned_cols=26 Identities=12% Similarity=0.182 Sum_probs=18.9
Q ss_pred hhhHHhh-hhhchhhhhhh-ccccccCC
Q 029074 173 YETLEGI-MSDGTAHRLGR-RYDVRIHD 198 (199)
Q Consensus 173 ~~~~~~~-~~~~~~~~l~~-~~~~~~~~ 198 (199)
-..++.+ -....+.++|| .||+.-++
T Consensus 44 ~~ei~~l~~~~~~ie~~AR~~lgm~~~~ 71 (80)
T PF04977_consen 44 KEEIERLKNDPDYIEKVAREKLGMVKPG 71 (80)
T ss_pred HHHHHHhcCCHHHHHHHHHHHcCCcCCC
Confidence 3444555 57788999999 99987655
No 154
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=55.55 E-value=70 Score=23.00 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhh
Q 029074 143 EASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM 180 (199)
Q Consensus 143 e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~ 180 (199)
|+..+-+.+.++-++|.++..+....+.++.+.+|..+
T Consensus 62 E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 62 EEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777777777777777777776654
No 155
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=51.87 E-value=30 Score=24.19 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=33.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEec
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEME 68 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~ 68 (199)
-+..-|||||++..+-+.--..+.+..+.- ++.++...... .||+|-++.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~ne---qG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNNE---QGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCCC---CCEEEEEeC
Confidence 345679999999999888777666654432 33344432333 799998774
No 156
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.00 E-value=9.1 Score=26.89 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=24.0
Q ss_pred HhhhccCCCEEEecCCCCCCCHHHHHHHh
Q 029074 10 AAFLEKVKRTVYLDNLSPQVTEPVIRTAL 38 (199)
Q Consensus 10 ~~f~~~~~rtlfVgnLp~~vte~~L~~~F 38 (199)
.-|...++|+|-|.|||...+++.|+..+
T Consensus 45 qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 45 QVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 34566788999999999999999998643
No 157
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=50.66 E-value=25 Score=29.94 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=24.8
Q ss_pred EEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecc
Q 029074 63 ALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAE 100 (199)
Q Consensus 63 afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~ 100 (199)
|||+|.+..+|..|++.+.... ++.+++..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~------~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR------PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC------CCCceEeeCC
Confidence 7999999999999999665542 5566777664
No 158
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=49.50 E-value=20 Score=28.22 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV 77 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai 77 (199)
.......+++++++..++...+...|..+|.+....+.....+.. ...+.++.+.....+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKI-PKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcc-cccccccchhHHHhhhhhh
Confidence 334556799999999999999999999999997766655533321 1344444444444444433
No 159
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=49.41 E-value=12 Score=31.22 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEE
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNV 47 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v 47 (199)
..++++|+-|+|...|++.|.++.++.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345789999999999999999999999966543
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=48.32 E-value=31 Score=29.64 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCC--------CCCCCCceEEEEEecCHHHHH
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNY--------TEFRNIPHCALVEMENLKQAK 74 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~--------tg~s~~~G~afVef~~~~~A~ 74 (199)
..|.|.+.|+...++=-.+-.-|-+||+|++|.++.+. ..+. .....+.|-+.+.|-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~--~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKN--NQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccccccccccc--ceEEEEeeechHHHH
Confidence 34678889999888888888899999999999998763 1122 467788888877665
No 161
>PF14893 PNMA: PNMA
Probab=46.53 E-value=74 Score=27.85 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=32.3
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHh----ccCCceEEEEEeeC-CCCCCCCceEEEEEecC
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTAL----DQFGNVKNVQFIPN-YTEFRNIPHCALVEMEN 69 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F----~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~ 69 (199)
+--..|.|.|.+||.++++.+|.+.+ .+.|. .+|... ..-.. +.--|+|+|..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~---yrvl~~~f~~~~-~~~aalve~~e 71 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGR---YRVLGKMFRREE-NAKAALVEFAE 71 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhccccc---ceehhhHhhhhc-ccceeeeeccc
Confidence 33456789999999999998877665 44554 333321 01000 13467888864
No 162
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=45.66 E-value=30 Score=24.76 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=31.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMEN 69 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~ 69 (199)
-+..-||||+++..+-+..-..+-+.++. -++.++...... .||+|-++..
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~e---qG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTE---SGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCC---CCcEEEecCC
Confidence 34567999999998887655555554543 233344432323 6899988765
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.58 E-value=56 Score=21.40 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHhccCCceEEEEE
Q 029074 32 PVIRTALDQFGNVKNVQF 49 (199)
Q Consensus 32 ~~L~~~F~~fG~V~~v~v 49 (199)
.+|++.|++.|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999875543
No 164
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=42.87 E-value=26 Score=28.11 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=37.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccC-CceEEEEEeeCCCC--CCCCceEEEEEecCHHHHHHHHHH
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQF-GNVKNVQFIPNYTE--FRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~f-G~V~~v~v~~d~tg--~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
...|++|.. .|++.|..+..-- |.+..+.+-+...+ .. +|--||+|.+.++|.+.++.
T Consensus 109 ~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~f--kGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 109 IKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPF--KGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCC--CCceEEEeecHHHHHhhhhh
Confidence 345777776 4444444333211 68887776554333 33 89999999999999987764
No 165
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=42.80 E-value=1e+02 Score=20.65 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHH-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHh
Q 029074 126 DFEVAQRLKRLARK-HAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEG 178 (199)
Q Consensus 126 ~~~~~~~~k~l~~~-~~~e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~ 178 (199)
.|+...-++.+... ...+...+.+....+-.....+.+..+-.||.+|=..-.
T Consensus 5 ~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~ 58 (87)
T PF08700_consen 5 NFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASD 58 (87)
T ss_pred cCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444443 345566677777777888899999999999999744433
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.08 E-value=34 Score=30.35 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=49.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCc-eEEEEEeeCCCC-CCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGN-VKNVQFIPNYTE-FRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~-V~~v~v~~d~tg-~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.+|-|.+||+..++.++.+-..+|-. |.-..+.....+ .+...+.|+|.|..+++...-...++|+.|.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 56889999999999998877777642 222333322111 1113678999999999988888889999776
No 167
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.24 E-value=1.3e+02 Score=20.83 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=41.6
Q ss_pred EEEecCCCCCCCHHHHHHHhcc-CC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQ-FG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~-fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
+-|+=..+...+..+|+.+++. || .|.+|..+.-..|. --|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~----KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE----KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc----EEEEEEeCCCCcHHHHHHh
Confidence 4555556788999999999987 66 67788776544332 3599999988888876543
No 168
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.57 E-value=67 Score=28.98 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=42.6
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCc-eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGN-VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~-V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
-|=|-++|...-.++|..+|+.||. -.+|.|+- .-.||-.|++...|..|+..
T Consensus 393 VlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--------dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 393 VLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--------DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred eeEeccCchhhccHHHHHHHHHhhcCCceeEEee--------cceeEEeecchHHHHHHhhc
Confidence 3678889998889999999999974 34666664 34689999999999999864
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.06 E-value=41 Score=23.57 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=25.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEec
Q 029074 63 ALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 63 afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a 99 (199)
|.|+|.++..|++.++ +..+++.+.....+++|.+.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~ 36 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPV 36 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeE
Confidence 6899999999999886 55566665544445555544
No 170
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.02 E-value=1.4e+02 Score=20.28 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=41.5
Q ss_pred EEEecCCCCCCCHHHHHHHhcc-CC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQ-FG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~-fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
+-|+=..+...+..+|+.++++ || .|.+|..+.-..+ .--|||.+.....|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~----~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG----EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC----ceEEEEEECCCCcHHHHHHh
Confidence 4566667889999999999987 66 6777776554333 23599999888888776543
No 171
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.44 E-value=58 Score=27.48 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKN 46 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~ 46 (199)
.-...|+|||+.+|..-+..++...-.+..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~ 124 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQD 124 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccce
Confidence 456789999999999999999887644433
No 172
>PF13518 HTH_28: Helix-turn-helix domain
Probab=33.43 E-value=30 Score=20.64 Aligned_cols=24 Identities=8% Similarity=0.356 Sum_probs=18.0
Q ss_pred hhhhHHhhhhhchhhhhhhccccc
Q 029074 172 KYETLEGIMSDGTAHRLGRRYDVR 195 (199)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~~~~~ 195 (199)
|+..+..+....+...+|++|||+
T Consensus 2 r~~iv~~~~~g~s~~~~a~~~gis 25 (52)
T PF13518_consen 2 RLQIVELYLEGESVREIAREFGIS 25 (52)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCC
Confidence 455666666667888899999885
No 173
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.98 E-value=1.7e+02 Score=21.00 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=22.9
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 029074 135 RLARKHAAEASFVLKEQLEQEEQLANQQEETLKQN 169 (199)
Q Consensus 135 ~l~~~~~~e~~~~~k~~~~~~~~l~~~q~e~l~~~ 169 (199)
..++.++.|-+.-++..++++...+++.-+.|+.+
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777777777777777666555555555544
No 174
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.45 E-value=75 Score=25.48 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCCEEEecCCCCCCCHH-----HHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 16 VKRTVYLDNLSPQVTEP-----VIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~-----~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
+..++.+.+++..+-.+ ....+|.+|-...-..+++ + .++.-|.|.++..|..|.-.++++.|.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----s--frrvRi~f~~p~~a~~a~i~~~~~~f~---- 77 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----S--FRRVRINFSNPEAAADARIKLHSTSFN---- 77 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----h--hceeEEeccChhHHHHHHHHhhhcccC----
Confidence 34567777776654332 3356666666554444443 2 556678999999999999999999998
Q ss_pred Cc-ceEEEeccc
Q 029074 91 PR-PVRARAAEV 101 (199)
Q Consensus 91 gr-~l~v~~a~~ 101 (199)
|. .++.-++.+
T Consensus 78 ~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 78 GKNELKLYFAQP 89 (193)
T ss_pred CCceEEEEEccC
Confidence 66 666666654
No 175
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.02 E-value=76 Score=21.24 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=37.4
Q ss_pred HHHHHHhccCC-ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEec
Q 029074 32 PVIRTALDQFG-NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAA 99 (199)
Q Consensus 32 ~~L~~~F~~fG-~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a 99 (199)
++|.+.|...| ++..+..+.+ .++.+ -..-+|+.....+... .++=..+. +++|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P--~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNP--QNMFEVELVPAANGKE---ILNIKTLG----GQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCc--ceeEEEEeeecCCCcc---eEeehhhC----CeeEEEecC
Confidence 46788888888 7888888877 44443 5667888765433332 23333344 677777744
No 176
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.91 E-value=1.6e+02 Score=19.65 Aligned_cols=23 Identities=4% Similarity=0.341 Sum_probs=16.6
Q ss_pred HHhhhhhchhhhhhhc-cccccCC
Q 029074 176 LEGIMSDGTAHRLGRR-YDVRIHD 198 (199)
Q Consensus 176 ~~~~~~~~~~~~l~~~-~~~~~~~ 198 (199)
+..+-.+..+.++|+. |||..++
T Consensus 54 i~~l~~~~rIe~~Ar~~lgM~~p~ 77 (85)
T TIGR02209 54 VAELSRHERIEKIAKKQLGMKLPD 77 (85)
T ss_pred HHHHcCHHHHHHHHHHhcCCCCCC
Confidence 4455567889999995 4998665
No 177
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=31.13 E-value=21 Score=26.13 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=10.0
Q ss_pred hhhhccccccCC
Q 029074 187 RLGRRYDVRIHD 198 (199)
Q Consensus 187 ~l~~~~~~~~~~ 198 (199)
=|.+|||+.++|
T Consensus 29 LL~~HYGLtLND 40 (114)
T PF06755_consen 29 LLEQHYGLTLND 40 (114)
T ss_pred HHHHhcCCccCC
Confidence 478899999887
No 178
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=30.38 E-value=63 Score=25.17 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=7.7
Q ss_pred HHHHHHHHHhHhhh
Q 029074 160 NQQEETLKQNYKKY 173 (199)
Q Consensus 160 ~~q~e~l~~~~~~~ 173 (199)
=+|.|.|++-|.++
T Consensus 121 iEQVeLLkrI~d~L 134 (173)
T PF01452_consen 121 IEQVELLKRIYDML 134 (173)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34556666655553
No 179
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.06 E-value=78 Score=22.17 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=29.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhcc-CCceEEEEEeeCCCCCCCCceEEEEEecC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQ-FGNVKNVQFIPNYTEFRNIPHCALVEMEN 69 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~-fG~V~~v~v~~d~tg~s~~~G~afVef~~ 69 (199)
-+..-||||+++..+-+..-..+-+. .+. -++.++...... .||.|-++..
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e---~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTC---PGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCC---CCcEEEecCC
Confidence 34567999999988877544443333 222 123333332333 6888887654
No 180
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=29.47 E-value=1.5e+02 Score=21.66 Aligned_cols=77 Identities=14% Similarity=0.297 Sum_probs=43.8
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH---HHhCCCceeccCC----CcceEEEecccccCCCCCCCCCCccc
Q 029074 44 VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV---TSLHEFPFMMSGM----PRPVRARAAEVEMFDDHPAKPGQRIQ 116 (199)
Q Consensus 44 V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai---~~lng~~~~~~g~----gr~l~v~~a~~e~~~~~p~~p~~~~~ 116 (199)
|-.|++.+..+|. .|-|...|.++..-.... ....|. +++.-- -+++.+++. ...| ..+.
T Consensus 12 ip~VrLtRsrdg~---~g~a~f~F~~p~al~~~~~~~~~itGm-~LiDeEGei~tr~v~~KFv-----nGkp----~~iE 78 (109)
T TIGR03047 12 IPDVRLTRSRDGG---TGTALFRFENPKALDKFNSDTGEITGM-YLIDEEGEIVTREVKAKFV-----NGKP----KALE 78 (109)
T ss_pred CCceEEEEccCCC---ceEEEEEECCchhhhhccccccceeeE-EEEccCccEEEEecceEEE-----CCCc----cEEE
Confidence 5678888887777 799999999877644422 123332 221111 233333332 2222 2256
Q ss_pred ccccCCCCchhHHHHHH
Q 029074 117 FQWLDPNDPDFEVAQRL 133 (199)
Q Consensus 117 ~r~~~~~~~~~~~~~~~ 133 (199)
|.+.-.++.+|+..+|.
T Consensus 79 a~y~m~s~~~WdRFMRF 95 (109)
T TIGR03047 79 AVYIMKSEDEWDRFMRF 95 (109)
T ss_pred EEEEECCHHHHHHHHHH
Confidence 77777777777776663
No 181
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=67 Score=25.57 Aligned_cols=46 Identities=26% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhhhhchhhhhhhcccccc
Q 029074 143 EASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIMSDGTAHRLGRRYDVRI 196 (199)
Q Consensus 143 e~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (199)
|+.+|+++.+....+--.+..++|+-......++|. ++||-||..+
T Consensus 128 EAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEV--------N~ArvYNw~V 173 (187)
T KOG3313|consen 128 EAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEV--------NMARVYNWDV 173 (187)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeee--------eeeeeeechH
Confidence 567788888887777777777777666555555443 6788888765
No 182
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=29.28 E-value=1.3e+02 Score=21.91 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHhh-----hhhHHhhhhhchhhhhh
Q 029074 154 QEEQLANQQEETLKQNYKK-----YETLEGIMSDGTAHRLG 189 (199)
Q Consensus 154 ~~~~l~~~q~e~l~~~~~~-----~~~~~~~~~~~~~~~l~ 189 (199)
.++.-++-.+|.|+..|++ |+-++.-+..++...|+
T Consensus 68 SeeNKakndkERLDdYYKRNykDYF~fveG~~r~kke~eLs 108 (122)
T PLN00078 68 SEENKEKNDKERLDDYYKRNYKDYFGLIEGPAREKKEDELT 108 (122)
T ss_pred hHHhHHHhHHHHHHHHHHHhHHHHHHHhccccccCChhhcC
Confidence 3455567777777777766 77777777666665553
No 183
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.89 E-value=41 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=14.8
Q ss_pred ccCCCEEEecCCCCCCCHH
Q 029074 14 EKVKRTVYLDNLSPQVTEP 32 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~ 32 (199)
...+|++|||++|..+-.+
T Consensus 24 s~tSr~vflG~IP~~W~~~ 42 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQD 42 (67)
T ss_pred HHcCceEEECCCChHHHHc
Confidence 3567899999999876554
No 184
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.44 E-value=9.9 Score=35.37 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=53.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
..++|+.|+++.++-.+|..+++.+--+.++-+..+ ..... ..++.|+|........|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~--~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNF--ERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHH--HHHhhHhhccccchHHHHHHhhhcccc
Confidence 346999999999999999999999877766655443 22222 557789999888888999999987655
No 185
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=26.32 E-value=1.2e+02 Score=22.29 Aligned_cols=81 Identities=10% Similarity=0.210 Sum_probs=43.5
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHH--HHHhCCCceeccCCCcceEEEecccccCCCCCCCCCCcccccccC
Q 029074 44 VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDV--VTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWLD 121 (199)
Q Consensus 44 V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~A--i~~lng~~~~~~g~gr~l~v~~a~~e~~~~~p~~p~~~~~~r~~~ 121 (199)
|-.|++.+..+|. .|-|...|.++..-... .....|. +++.--| .|.+...........|. .+.|.++-
T Consensus 14 vp~VrLtRsrdg~---~g~a~f~F~~p~~l~~~~~~~~itgm-~liDeEG-ei~tr~v~~KFvnGkp~----~iEa~y~m 84 (111)
T PLN00039 14 VPDVRLTRSRDGT---NGTAIFVFDQPSVFDSSGELGDITGL-YMIDEEG-VLQTVDVSAKFVNGKPA----GIEAKYVM 84 (111)
T ss_pred CCceEEEEccCCC---ccEEEEEECCchhhccccccCceeeE-EEEccCc-cEEEEecceEEECCCcc----EEEEEEEE
Confidence 5678888887776 79999999987765442 1222331 2211111 12222222212222222 25677777
Q ss_pred CCCchhHHHHHH
Q 029074 122 PNDPDFEVAQRL 133 (199)
Q Consensus 122 ~~~~~~~~~~~~ 133 (199)
.++.+|+..+|.
T Consensus 85 ~s~~~WdRFMRF 96 (111)
T PLN00039 85 RSPREWDRFMRF 96 (111)
T ss_pred CCHHHHHHHHHH
Confidence 777777776663
No 186
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.29 E-value=85 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.4
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCC
Q 029074 60 PHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 60 ~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
+||-|||=.++.++..|++.+.+.
T Consensus 44 kGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 44 KGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCHHHHHHHHhcccce
Confidence 899999999999999998777654
No 187
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=25.54 E-value=1.3e+02 Score=19.83 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHHHHHhccCC-ceEEEEEeeCC-CCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecc
Q 029074 32 PVIRTALDQFG-NVKNVQFIPNY-TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAE 100 (199)
Q Consensus 32 ~~L~~~F~~fG-~V~~v~v~~d~-tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~ 100 (199)
++|.+.|...| +|..+.-+... ++.+ .-.-||+.....+... .++=..+. +..|+|...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~p--l~mf~veL~p~~~~k~---i~~Ik~l~----~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKP--LNMFFVELEPKPNNKE---IYKIKTLC----GQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCC--ceEEEEeeccCccccc---eeehHhhC----CeEEEEecCC
Confidence 46777888888 67777777663 4444 5677888876554232 23333445 6777777543
No 188
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.69 E-value=3.8e+02 Score=21.76 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=9.1
Q ss_pred chhHHHHHHHHHHHH
Q 029074 125 PDFEVAQRLKRLARK 139 (199)
Q Consensus 125 ~~~~~~~~~k~l~~~ 139 (199)
-|++.+++++...+.
T Consensus 69 iD~ekm~~~qk~m~e 83 (201)
T COG1422 69 IDQEKMKELQKMMKE 83 (201)
T ss_pred ccHHHHHHHHHHHHH
Confidence 366777776665544
No 189
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.91 E-value=56 Score=27.13 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=22.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhc--cCCce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALD--QFGNV 44 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~--~fG~V 44 (199)
..-++|||||+.++..-|..++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 45589999999999999998887 45543
No 190
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=22.86 E-value=2.3e+02 Score=20.87 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=42.8
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH---HHhCCCceeccCC----CcceEEEecccccCCCCCCCCCCccc
Q 029074 44 VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV---TSLHEFPFMMSGM----PRPVRARAAEVEMFDDHPAKPGQRIQ 116 (199)
Q Consensus 44 V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai---~~lng~~~~~~g~----gr~l~v~~a~~e~~~~~p~~p~~~~~ 116 (199)
|-.|++.+..+|. .|-|...|.++..-.... ....|. +++.-- -+++.+++. ...|. .+.
T Consensus 15 ip~VrLtRsrdg~---~g~a~f~F~~p~al~~~~~~~~~itgm-~LiDeEGei~tr~v~~KFv-----nGkp~----~iE 81 (113)
T CHL00128 15 IPDVRLTRSRDGS---TGTATFRFKNPNILDKSTAKQGEITGM-YLIDEEGELSTRDVNAKFI-----NGKPQ----AIE 81 (113)
T ss_pred CCceEEEEccCCC---ceEEEEEECCchhhhhccccccceeeE-EEEccCccEEEEecceEEE-----CCCcc----EEE
Confidence 5678888887777 799999999877644321 112221 221111 233333332 22222 256
Q ss_pred ccccCCCCchhHHHHHH
Q 029074 117 FQWLDPNDPDFEVAQRL 133 (199)
Q Consensus 117 ~r~~~~~~~~~~~~~~~ 133 (199)
|.+.-.++.+|+..+|.
T Consensus 82 a~y~m~s~~~WdRFMRF 98 (113)
T CHL00128 82 AIYIMKNPEAWDRFMRF 98 (113)
T ss_pred EEEEECCHHHHHHHHHH
Confidence 77777777777766663
No 191
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=22.44 E-value=1e+02 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=19.6
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 60 PHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 60 ~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
+||-||.+......-.++..+.|..
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v~ 83 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGVR 83 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCcc
Confidence 5999999987677777887777753
No 192
>PRK09720 cybC cytochrome b562; Provisional
Probab=21.83 E-value=3.1e+02 Score=19.69 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=32.4
Q ss_pred CCCCchhHHHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhHhhh
Q 029074 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKE-QLEQEEQLANQQEETLKQNYKKY 173 (199)
Q Consensus 121 ~~~~~~~~~~~~~k~l~~~~~~e~~~~~k~-~~~~~~~l~~~q~e~l~~~~~~~ 173 (199)
.|.++++...+.--+..-.....+..|.+. .|++....+++....-+.+.+||
T Consensus 46 ~~ds~e~K~y~~Gld~lI~qID~A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 46 SPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677655554333322233334555555 78877777777777777777777
No 193
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.35 E-value=42 Score=30.13 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCCEEEecCCCCCCCHH--------HHHHHhcc--CCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHH
Q 029074 16 VKRTVYLDNLSPQVTEP--------VIRTALDQ--FGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVV 77 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~--------~L~~~F~~--fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai 77 (199)
..|.+|+.+.+...+.+ ++...|.. .|++..++.-++ ....+ +|..|++|.....|++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~--~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNF--RGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccc--cCcccccccChHHHHHHh
Confidence 35678888887765555 89999998 677888888777 35555 899999999999999875
No 194
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.18 E-value=3.7e+02 Score=20.32 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=58.1
Q ss_pred EEecCHHHHHHHHHHhCCCceeccCCCcceEEEecccccCCCCCCCCCCcccccccCCCCchhHHHHHHHHHHHHhHHHH
Q 029074 65 VEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEA 144 (199)
Q Consensus 65 Vef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e~~~~~p~~p~~~~~~r~~~~~~~~~~~~~~~k~l~~~~~~e~ 144 (199)
=.|.+.+-+...+..||.+ +. |.++...|.+-. ..+++ ....|-...+.|++..+|+.|.
T Consensus 22 d~lsDd~LvsmSVReLNr~-Lr--G~~reEVvrlKQ----------rRRTL-------KNRGYA~sCR~KRv~Qk~eLE~ 81 (135)
T KOG4196|consen 22 DRLSDDELVSMSVRELNRH-LR--GLSREEVVRLKQ----------RRRTL-------KNRGYAQSCRVKRVQQKHELEK 81 (135)
T ss_pred CCcCHHHHHHhhHHHHHHH-hc--CCCHHHHHHHHH----------HHHHH-------hhhhHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888764 33 333332222110 01111 1235777889999999998886
Q ss_pred H-HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhh
Q 029074 145 S-FVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM 180 (199)
Q Consensus 145 ~-~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~ 180 (199)
. ..+.++++.-..--.+....++..-.||+.+-.-.
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 45666666555555666677777777877766544
No 195
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.68 E-value=22 Score=32.39 Aligned_cols=75 Identities=4% Similarity=-0.054 Sum_probs=51.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++.|+..+|...+++++.-+|..||.|..+.+.+. ..|-. .-.+||.-.. .++..+|..+.-..+. +-.+++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~--~v~~f~~~~~-~~~~~~i~~~k~q~~~----~~~~r~ 76 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLG--EVTPFQHAKK-ANGPNYIQPQKRQTTF----ESQDRK 76 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcc--eeeeeeeeec-cCcccccCHHHHhhhh----hhhhhh
Confidence 44677889999999999999999999988877665 33333 5577877644 5667777655544444 555555
Q ss_pred Eec
Q 029074 97 RAA 99 (199)
Q Consensus 97 ~~a 99 (199)
..+
T Consensus 77 ~~~ 79 (572)
T KOG4365|consen 77 AVS 79 (572)
T ss_pred hcC
Confidence 544
Done!