Query 029074
Match_columns 199
No_of_seqs 315 out of 1467
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sde_A Paraspeckle component 1 99.9 8.4E-23 2.9E-27 169.2 17.8 154 17-172 96-259 (261)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-22 5.7E-27 144.7 10.5 80 16-101 18-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.8 1E-20 3.6E-25 137.9 10.9 81 15-101 4-85 (110)
4 3p5t_L Cleavage and polyadenyl 99.8 3.9E-21 1.3E-25 134.7 6.2 79 18-102 2-83 (90)
5 2dnz_A Probable RNA-binding pr 99.8 7.2E-20 2.4E-24 128.9 12.7 81 16-102 4-85 (95)
6 2dgs_A DAZ-associated protein 99.8 9.4E-20 3.2E-24 129.4 12.5 81 15-102 8-89 (99)
7 1whw_A Hypothetical protein ri 99.8 7.1E-20 2.4E-24 129.9 11.6 83 15-103 6-89 (99)
8 2lxi_A RNA-binding protein 10; 99.8 4.7E-21 1.6E-25 135.0 5.3 79 17-101 1-82 (91)
9 3ns6_A Eukaryotic translation 99.8 6.2E-21 2.1E-25 136.4 6.0 81 15-101 4-92 (100)
10 2d9p_A Polyadenylate-binding p 99.8 9.5E-20 3.2E-24 130.3 11.7 82 14-102 12-93 (103)
11 3md1_A Nuclear and cytoplasmic 99.8 6.6E-20 2.3E-24 125.8 10.4 78 18-101 2-80 (83)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.4E-20 1.1E-24 132.3 9.2 83 15-103 10-93 (102)
13 2lkz_A RNA-binding protein 5; 99.8 2E-20 6.9E-25 133.2 7.6 84 16-101 8-94 (95)
14 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.6E-20 2.3E-24 126.9 10.0 80 16-101 5-85 (87)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.4E-20 1.9E-24 126.8 9.2 80 15-100 5-85 (85)
16 2cpf_A RNA binding motif prote 99.8 7.7E-20 2.6E-24 129.5 10.2 83 15-103 3-89 (98)
17 2dnm_A SRP46 splicing factor; 99.8 9.5E-20 3.3E-24 130.3 10.7 82 15-102 11-93 (103)
18 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-19 6.2E-24 129.1 11.9 85 15-102 13-97 (105)
19 2x1f_A MRNA 3'-END-processing 99.8 9.7E-20 3.3E-24 128.8 10.3 80 17-102 2-82 (96)
20 2fy1_A RNA-binding motif prote 99.8 1.7E-19 5.8E-24 132.4 11.9 84 14-103 4-87 (116)
21 1x5u_A Splicing factor 3B subu 99.8 1.6E-19 5.3E-24 129.5 11.4 82 15-102 13-95 (105)
22 1x5t_A Splicing factor 3B subu 99.8 8.4E-20 2.9E-24 128.7 9.7 81 16-102 4-86 (96)
23 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-19 4.2E-24 130.2 10.5 86 14-102 10-96 (106)
24 2do4_A Squamous cell carcinoma 99.8 3.4E-20 1.2E-24 132.0 7.5 83 13-101 13-95 (100)
25 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-19 4E-24 129.5 10.2 81 16-102 11-92 (102)
26 2cph_A RNA binding motif prote 99.8 2.3E-19 7.9E-24 128.9 11.8 84 14-103 12-98 (107)
27 1x4h_A RNA-binding protein 28; 99.8 1.8E-19 6.1E-24 130.3 11.0 82 15-102 13-101 (111)
28 1s79_A Lupus LA protein; RRM, 99.8 8.2E-20 2.8E-24 131.7 9.2 80 15-101 9-88 (103)
29 4f25_A Polyadenylate-binding p 99.8 9.8E-20 3.3E-24 133.3 9.6 79 17-102 5-83 (115)
30 2ywk_A Putative RNA-binding pr 99.8 1.2E-19 4.1E-24 127.7 9.6 82 13-100 12-93 (95)
31 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-19 5.2E-24 131.8 10.5 82 15-102 23-105 (115)
32 2cq0_A Eukaryotic translation 99.8 1.7E-19 5.9E-24 129.0 10.5 83 14-102 12-95 (103)
33 2dhg_A TRNA selenocysteine ass 99.8 2.1E-19 7.2E-24 128.6 10.4 83 15-103 7-91 (104)
34 3ucg_A Polyadenylate-binding p 99.8 2.1E-19 7.3E-24 124.8 10.1 79 16-101 5-84 (89)
35 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-19 1.2E-23 127.3 11.5 82 14-102 12-93 (103)
36 1p27_B RNA-binding protein 8A; 99.8 1.9E-19 6.5E-24 129.2 9.9 80 16-101 22-102 (106)
37 2cq3_A RNA-binding protein 9; 99.8 6.8E-19 2.3E-23 125.8 12.7 82 15-103 13-94 (103)
38 2dgo_A Cytotoxic granule-assoc 99.8 4.8E-19 1.7E-23 129.0 12.1 82 15-102 13-95 (115)
39 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-19 6.5E-24 126.4 9.4 80 15-100 14-94 (94)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 3.1E-19 1E-23 128.0 10.4 82 14-103 12-95 (104)
41 4a8x_A RNA-binding protein wit 99.8 1.3E-19 4.5E-24 125.5 8.2 80 16-101 3-84 (88)
42 2div_A TRNA selenocysteine ass 99.8 2.5E-19 8.6E-24 127.1 9.8 82 15-102 7-94 (99)
43 2do0_A HnRNP M, heterogeneous 99.8 6.2E-19 2.1E-23 128.1 12.0 82 15-102 13-94 (114)
44 2la6_A RNA-binding protein FUS 99.8 2.9E-19 1E-23 127.0 10.0 79 16-100 12-99 (99)
45 2dng_A Eukaryotic translation 99.8 4.5E-19 1.6E-23 126.8 11.1 81 14-102 12-93 (103)
46 2cpe_A RNA-binding protein EWS 99.8 2.9E-19 1E-23 129.8 10.1 84 13-102 11-103 (113)
47 3n9u_C Cleavage and polyadenyl 99.8 2.1E-19 7.2E-24 138.8 9.8 80 16-101 54-136 (156)
48 2ki2_A SS-DNA binding protein 99.8 3.8E-20 1.3E-24 129.2 5.0 78 18-102 2-80 (90)
49 2jrs_A RNA-binding protein 39; 99.8 3.1E-19 1.1E-23 129.4 9.7 81 15-101 24-105 (108)
50 2cqc_A Arginine/serine-rich sp 99.8 2.6E-19 8.8E-24 125.9 9.0 80 16-101 14-94 (95)
51 2cq4_A RNA binding motif prote 99.8 1.2E-19 4E-24 132.2 7.4 80 16-102 24-104 (114)
52 1p1t_A Cleavage stimulation fa 99.8 2.5E-19 8.5E-24 128.1 8.3 81 16-102 7-88 (104)
53 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-19 1.3E-23 128.7 9.2 81 15-101 24-105 (110)
54 2mss_A Protein (musashi1); RNA 99.8 1.8E-19 6.1E-24 121.6 7.0 74 19-99 1-75 (75)
55 3s7r_A Heterogeneous nuclear r 99.8 5.6E-19 1.9E-23 122.4 9.7 79 14-99 8-87 (87)
56 2kt5_A RNA and export factor-b 99.8 7E-19 2.4E-23 130.0 10.6 82 16-103 34-115 (124)
57 2cpi_A CCR4-NOT transcription 99.8 4.4E-19 1.5E-23 129.0 9.3 86 13-102 11-101 (111)
58 2cqd_A RNA-binding region cont 99.8 9.7E-19 3.3E-23 127.7 11.1 83 13-102 13-96 (116)
59 2khc_A Testis-specific RNP-typ 99.8 4.2E-19 1.4E-23 129.9 9.0 81 14-100 37-118 (118)
60 3ulh_A THO complex subunit 4; 99.8 6.5E-19 2.2E-23 126.6 9.9 79 16-100 28-106 (107)
61 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-19 2.3E-23 132.3 10.3 83 14-102 39-122 (139)
62 1sjq_A Polypyrimidine tract-bi 99.8 4.2E-19 1.4E-23 128.6 8.7 77 15-102 14-92 (105)
63 1x5o_A RNA binding motif, sing 99.8 9.4E-19 3.2E-23 127.3 10.6 87 13-101 21-111 (114)
64 1x4b_A Heterogeneous nuclear r 99.8 6.7E-19 2.3E-23 128.5 9.8 80 17-103 27-107 (116)
65 1x4d_A Matrin 3; structural ge 99.8 3.4E-19 1.2E-23 128.5 8.0 75 16-101 14-91 (102)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 1.3E-18 4.4E-23 124.3 11.0 83 14-104 12-95 (103)
67 2dgv_A HnRNP M, heterogeneous 99.8 1E-18 3.4E-23 122.2 10.2 80 16-102 7-86 (92)
68 3r27_A HnRNP L, heterogeneous 99.8 7.5E-19 2.6E-23 126.2 9.4 77 16-101 20-96 (100)
69 3ex7_B RNA-binding protein 8A; 99.8 9E-19 3.1E-23 129.5 10.1 82 15-102 20-102 (126)
70 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.1E-19 1.1E-23 120.7 7.0 75 18-99 1-76 (77)
71 2dh8_A DAZ-associated protein 99.8 6.6E-19 2.3E-23 126.3 8.9 82 14-102 13-95 (105)
72 2krb_A Eukaryotic translation 99.8 2.6E-19 9E-24 122.8 6.4 73 17-96 1-80 (81)
73 2m2b_A RNA-binding protein 10; 99.8 3E-19 1E-23 133.5 7.2 82 14-102 20-108 (131)
74 1x4e_A RNA binding motif, sing 99.8 1.9E-19 6.5E-24 124.3 5.3 78 16-99 4-82 (85)
75 2nlw_A Eukaryotic translation 99.8 5.8E-19 2E-23 127.1 8.1 81 14-101 12-99 (105)
76 2dis_A Unnamed protein product 99.8 1.5E-18 5.1E-23 125.1 10.1 82 16-103 7-93 (109)
77 2kxn_B Transformer-2 protein h 99.8 9.1E-19 3.1E-23 131.0 9.3 81 15-101 44-125 (129)
78 2fc9_A NCL protein; structure 99.8 1.5E-18 5.2E-23 123.6 10.0 79 15-102 13-91 (101)
79 1x4g_A Nucleolysin TIAR; struc 99.8 3.5E-18 1.2E-22 123.5 12.1 85 7-102 15-99 (109)
80 2wbr_A GW182, gawky, LD47780P; 99.8 8E-19 2.7E-23 122.8 8.1 74 16-100 6-79 (89)
81 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.1E-19 2.1E-23 125.8 7.5 80 14-101 16-97 (100)
82 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-18 5E-23 133.0 10.0 80 17-102 70-150 (158)
83 2cq1_A PTB-like protein L; RRM 99.8 3.5E-18 1.2E-22 122.8 11.3 78 15-103 13-92 (101)
84 2err_A Ataxin-2-binding protei 99.8 1.3E-18 4.5E-23 126.1 9.0 83 13-102 25-107 (109)
85 2ek1_A RNA-binding protein 12; 99.8 5.1E-19 1.8E-23 124.4 6.6 79 16-100 14-93 (95)
86 1x4a_A Splicing factor, argini 99.8 4.3E-18 1.5E-22 122.9 11.5 81 14-102 19-99 (109)
87 1whx_A Hypothetical protein ri 99.8 1.6E-18 5.5E-23 126.2 9.1 80 15-105 8-87 (111)
88 1wg5_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 122.9 10.6 81 15-102 13-94 (104)
89 2cqp_A RNA-binding protein 12; 99.8 6E-19 2.1E-23 124.9 6.5 81 15-101 13-94 (98)
90 2jwn_A Embryonic polyadenylate 99.8 2.6E-18 9E-23 126.7 10.2 79 16-101 35-114 (124)
91 2dgw_A Probable RNA-binding pr 99.8 2.3E-18 7.8E-23 120.4 9.2 81 14-102 7-87 (91)
92 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-18 1.2E-22 131.0 11.1 81 16-102 38-119 (156)
93 2dgx_A KIAA0430 protein; RRM d 99.8 1.8E-18 6.3E-23 122.4 8.6 78 17-102 9-90 (96)
94 2rs2_A Musashi-1, RNA-binding 99.8 2.7E-18 9.1E-23 124.6 9.6 80 15-101 23-103 (109)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.5E-18 8.4E-23 128.9 9.4 79 15-99 61-140 (140)
96 2dnq_A RNA-binding protein 4B; 99.8 7.5E-18 2.6E-22 117.6 11.2 75 15-102 6-80 (90)
97 2ad9_A Polypyrimidine tract-bi 99.8 3.4E-18 1.2E-22 126.5 9.9 77 15-102 29-107 (119)
98 2dgt_A RNA-binding protein 30; 99.8 5.4E-18 1.9E-22 118.8 10.5 75 15-102 8-82 (92)
99 2a3j_A U1 small nuclear ribonu 99.8 2.7E-18 9.3E-23 128.3 9.4 79 15-101 27-109 (127)
100 2hvz_A Splicing factor, argini 99.8 2.6E-18 9E-23 122.3 8.8 76 18-103 1-76 (101)
101 1wez_A HnRNP H', FTP-3, hetero 99.8 4.1E-18 1.4E-22 122.4 9.6 81 14-102 12-92 (102)
102 2cpx_A Hypothetical protein FL 99.8 9.5E-19 3.3E-23 127.3 6.3 81 16-102 24-105 (115)
103 1wex_A Hypothetical protein (r 99.8 4.3E-18 1.5E-22 123.0 9.6 77 15-102 13-91 (104)
104 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.6E-18 1.2E-22 132.3 9.9 82 15-102 70-152 (165)
105 2cpj_A Non-POU domain-containi 99.8 6.4E-18 2.2E-22 120.0 10.3 77 15-102 13-89 (99)
106 2cpy_A RNA-binding protein 12; 99.7 1.2E-18 4E-23 127.3 6.3 81 15-102 13-94 (114)
107 1iqt_A AUF1, heterogeneous nuc 99.7 9.1E-19 3.1E-23 117.9 5.2 74 19-99 1-75 (75)
108 2ytc_A PRE-mRNA-splicing facto 99.7 4.5E-18 1.5E-22 117.2 8.7 75 15-100 10-85 (85)
109 2lea_A Serine/arginine-rich sp 99.7 2.2E-18 7.7E-23 129.7 7.7 80 16-101 46-126 (135)
110 2cqh_A IGF-II mRNA-binding pro 99.7 3.5E-18 1.2E-22 119.9 8.1 76 16-103 7-84 (93)
111 3q2s_C Cleavage and polyadenyl 99.7 2.9E-18 1E-22 140.0 8.9 80 16-101 67-149 (229)
112 3lqv_A PRE-mRNA branch site pr 99.7 7.9E-18 2.7E-22 122.5 10.1 79 15-101 6-84 (115)
113 1x4f_A Matrin 3; structural ge 99.7 3.3E-18 1.1E-22 125.2 7.8 76 15-101 23-101 (112)
114 2cpd_A Apobec-1 stimulating pr 99.7 1.7E-17 5.8E-22 117.7 10.8 74 16-102 14-89 (99)
115 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.7E-22 116.8 9.6 75 15-102 7-81 (90)
116 2la4_A Nuclear and cytoplasmic 99.7 5.3E-18 1.8E-22 120.7 7.9 76 15-101 25-100 (101)
117 1fxl_A Paraneoplastic encephal 99.7 2.5E-17 8.5E-22 125.5 12.1 81 16-102 1-82 (167)
118 1nu4_A U1A RNA binding domain; 99.7 2.9E-18 9.9E-23 121.0 6.3 80 14-101 5-88 (97)
119 2fc8_A NCL protein; structure 99.7 1.7E-17 5.9E-22 118.1 10.4 80 15-103 13-93 (102)
120 2hgl_A HNRPF protein, heteroge 99.7 3.1E-18 1.1E-22 129.5 6.8 80 15-101 42-124 (136)
121 2db1_A Heterogeneous nuclear r 99.7 3.9E-18 1.3E-22 125.5 7.0 81 15-102 15-98 (118)
122 2xs2_A Deleted in azoospermia- 99.7 3.2E-18 1.1E-22 122.1 6.4 78 16-101 8-85 (102)
123 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 119.0 9.8 75 16-103 10-84 (103)
124 1wel_A RNA-binding protein 12; 99.7 1.6E-18 5.4E-23 128.3 4.9 79 16-101 24-103 (124)
125 3md3_A Nuclear and cytoplasmic 99.7 3E-17 1E-21 124.9 12.0 97 18-122 1-97 (166)
126 2e5j_A Methenyltetrahydrofolat 99.7 9.2E-18 3.1E-22 118.8 8.5 79 13-101 15-93 (97)
127 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-17 5.4E-22 120.4 9.5 78 11-101 25-102 (108)
128 1fj7_A Nucleolin RBD1, protein 99.7 9.3E-19 3.2E-23 124.7 2.9 78 16-101 16-94 (101)
129 2lmi_A GRSF-1, G-rich sequence 99.7 3.4E-18 1.2E-22 123.5 5.8 81 15-102 9-92 (107)
130 1b7f_A Protein (SXL-lethal pro 99.7 3.3E-17 1.1E-21 125.3 11.5 81 16-102 2-83 (168)
131 2f3j_A RNA and export factor b 99.7 1.4E-17 4.7E-22 131.0 9.6 81 17-103 88-168 (177)
132 2xnq_A Nuclear polyadenylated 99.7 2.6E-17 9.1E-22 116.9 10.0 75 14-101 19-94 (97)
133 2i2y_A Fusion protein consists 99.7 1.5E-17 5.1E-22 126.7 9.2 77 15-101 71-147 (150)
134 2kvi_A Nuclear polyadenylated 99.7 1.8E-17 6.2E-22 117.2 9.0 75 15-102 8-83 (96)
135 1x4c_A Splicing factor, argini 99.7 5.3E-17 1.8E-21 117.3 11.7 76 15-102 13-93 (108)
136 4f02_A Polyadenylate-binding p 99.7 2.1E-17 7.1E-22 132.7 10.5 80 16-101 14-94 (213)
137 1why_A Hypothetical protein ri 99.7 3E-17 1E-21 116.1 9.9 77 16-101 16-92 (97)
138 2dnn_A RNA-binding protein 12; 99.7 1.4E-17 4.8E-22 121.3 8.4 76 18-101 17-92 (109)
139 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 4E-22 122.1 7.3 76 17-101 28-104 (111)
140 2lcw_A RNA-binding protein FUS 99.6 5.3E-19 1.8E-23 129.2 0.0 82 15-102 5-95 (116)
141 1wf1_A RNA-binding protein RAL 99.7 3.4E-17 1.1E-21 118.5 9.1 72 17-101 27-99 (110)
142 3egn_A RNA-binding protein 40; 99.7 1E-17 3.4E-22 126.7 6.3 81 16-102 44-130 (143)
143 3nmr_A Cugbp ELAV-like family 99.7 6E-17 2E-21 124.4 10.8 81 16-99 94-174 (175)
144 2cq2_A Hypothetical protein LO 99.7 1.8E-17 6.2E-22 121.6 7.5 80 15-101 23-105 (114)
145 2dha_A FLJ20171 protein; RRM d 99.7 1.3E-17 4.5E-22 123.9 6.7 82 13-101 19-104 (123)
146 3md3_A Nuclear and cytoplasmic 99.7 6.2E-17 2.1E-21 123.1 10.6 79 16-100 86-165 (166)
147 1fjc_A Nucleolin RBD2, protein 99.7 8.7E-18 3E-22 118.4 5.4 77 15-101 14-90 (96)
148 2qfj_A FBP-interacting repress 99.7 1E-16 3.5E-21 127.4 11.9 82 15-102 123-205 (216)
149 1wg1_A KIAA1579 protein, homol 99.7 4.5E-17 1.5E-21 113.3 8.5 77 15-103 3-79 (88)
150 2hgn_A Heterogeneous nuclear r 99.7 9.8E-18 3.4E-22 127.2 5.3 82 13-102 42-123 (139)
151 2e5g_A U6 snRNA-specific termi 99.7 9.6E-17 3.3E-21 112.9 10.0 75 16-102 7-82 (94)
152 2j8a_A Histone-lysine N-methyl 99.7 7.1E-17 2.4E-21 120.4 9.5 76 17-98 2-92 (136)
153 3zzy_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 119.6 11.0 75 19-103 30-107 (130)
154 2e44_A Insulin-like growth fac 99.7 9E-17 3.1E-21 113.2 9.1 78 16-102 14-92 (96)
155 3d2w_A TAR DNA-binding protein 99.7 1.2E-16 4E-21 111.9 9.6 76 14-101 8-83 (89)
156 1l3k_A Heterogeneous nuclear r 99.7 1.8E-16 6.1E-21 124.2 11.7 81 15-102 11-92 (196)
157 2g4b_A Splicing factor U2AF 65 99.7 8.1E-17 2.8E-21 123.7 9.3 77 17-99 94-171 (172)
158 2e5i_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 118.1 10.5 73 20-103 28-103 (124)
159 3nmr_A Cugbp ELAV-like family 99.7 2.3E-16 7.9E-21 121.1 11.6 83 17-102 3-88 (175)
160 1x5p_A Negative elongation fac 99.7 2.6E-16 8.8E-21 111.3 10.9 75 15-102 13-87 (97)
161 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-16 5.7E-21 123.3 10.6 79 18-103 47-125 (164)
162 3pgw_S U1-70K; protein-RNA com 99.7 1.4E-16 4.6E-21 141.5 11.3 80 18-103 103-183 (437)
163 2hgm_A HNRPF protein, heteroge 99.7 5.6E-17 1.9E-21 121.1 7.3 80 15-102 40-121 (126)
164 2hzc_A Splicing factor U2AF 65 99.7 9.3E-17 3.2E-21 110.9 7.8 72 15-98 4-86 (87)
165 2cjk_A Nuclear polyadenylated 99.7 6.3E-17 2.2E-21 123.7 7.6 78 17-101 87-165 (167)
166 2dnl_A Cytoplasmic polyadenyla 99.7 9.9E-17 3.4E-21 117.0 7.9 64 15-81 6-73 (114)
167 4f02_A Polyadenylate-binding p 99.7 1.6E-16 5.6E-21 127.4 9.5 78 17-101 103-180 (213)
168 2yh0_A Splicing factor U2AF 65 99.7 2E-16 6.9E-21 124.1 9.6 82 15-102 112-194 (198)
169 1b7f_A Protein (SXL-lethal pro 99.7 4E-16 1.4E-20 119.2 10.6 80 16-99 88-168 (168)
170 1l3k_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 122.8 9.9 80 16-102 103-183 (196)
171 2qfj_A FBP-interacting repress 99.7 3.8E-16 1.3E-20 124.1 10.5 80 16-101 27-107 (216)
172 2pe8_A Splicing factor 45; RRM 99.7 5.8E-16 2E-20 111.9 10.4 88 13-106 4-98 (105)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 8.6E-17 2.9E-21 111.7 5.8 75 16-102 4-78 (88)
174 2voo_A Lupus LA protein; RNA-b 99.7 3.2E-16 1.1E-20 124.7 9.9 78 16-100 108-185 (193)
175 3tyt_A Heterogeneous nuclear r 99.7 4.1E-16 1.4E-20 125.1 9.8 77 16-102 3-80 (205)
176 3beg_B Splicing factor, argini 99.7 2.9E-16 1E-20 114.8 8.2 74 16-101 15-93 (115)
177 1fxl_A Paraneoplastic encephal 99.6 8.6E-16 3E-20 116.8 10.9 78 16-99 87-167 (167)
178 2cjk_A Nuclear polyadenylated 99.6 3.5E-16 1.2E-20 119.5 8.0 78 16-101 2-80 (167)
179 3u1l_A PRE-mRNA-splicing facto 99.6 5.8E-16 2E-20 127.3 8.5 81 14-101 131-228 (240)
180 2diu_A KIAA0430 protein; struc 99.6 1.2E-15 4.1E-20 107.8 8.4 70 17-101 8-83 (96)
181 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.7E-20 126.2 9.8 82 13-102 5-90 (282)
182 2bz2_A Negative elongation fac 99.6 1.7E-15 5.8E-20 111.9 9.1 75 15-102 37-111 (121)
183 1fje_B Nucleolin RBD12, protei 99.6 1.9E-15 6.6E-20 116.5 8.4 76 16-101 98-173 (175)
184 3smz_A Protein raver-1, ribonu 99.6 3E-15 1E-19 124.2 10.0 81 15-101 182-263 (284)
185 3smz_A Protein raver-1, ribonu 99.6 7.8E-15 2.7E-19 121.8 11.4 100 16-122 94-194 (284)
186 3tyt_A Heterogeneous nuclear r 99.6 2.9E-15 9.8E-20 120.2 7.7 80 17-99 123-204 (205)
187 1qm9_A Polypyrimidine tract-bi 99.6 1.6E-14 5.4E-19 113.7 11.4 77 16-102 2-79 (198)
188 2adc_A Polypyrimidine tract-bi 99.6 2.5E-14 8.6E-19 115.8 12.7 78 15-102 32-110 (229)
189 2ghp_A U4/U6 snRNA-associated 99.6 4.9E-15 1.7E-19 123.4 8.6 80 15-101 208-290 (292)
190 1fje_B Nucleolin RBD12, protei 99.6 9.4E-16 3.2E-20 118.3 3.9 100 14-123 10-110 (175)
191 2ghp_A U4/U6 snRNA-associated 99.6 1.3E-14 4.4E-19 120.9 10.8 102 16-123 116-221 (292)
192 3sde_A Paraspeckle component 1 99.6 1.5E-14 5.1E-19 119.4 10.2 75 16-101 21-95 (261)
193 1jmt_A Splicing factor U2AF 35 99.5 2E-15 6.9E-20 108.8 3.7 72 22-99 20-103 (104)
194 2g4b_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 108.4 11.1 74 16-101 3-87 (172)
195 3v4m_A Splicing factor U2AF 65 99.5 2E-14 6.7E-19 103.8 7.3 85 15-105 3-100 (105)
196 2dit_A HIV TAT specific factor 99.5 8.1E-14 2.8E-18 101.1 10.7 78 15-101 13-101 (112)
197 2yh0_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 108.1 11.3 75 16-102 3-88 (198)
198 3ue2_A Poly(U)-binding-splicin 99.5 3.6E-14 1.2E-18 104.6 7.2 84 16-105 19-112 (118)
199 3tht_A Alkylated DNA repair pr 99.5 8.1E-14 2.8E-18 120.0 9.3 78 15-100 16-97 (345)
200 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-13 4.4E-18 114.3 9.9 76 16-100 206-281 (282)
201 1qm9_A Polypyrimidine tract-bi 99.5 2E-13 6.8E-18 107.4 8.7 77 17-102 120-197 (198)
202 2adc_A Polypyrimidine tract-bi 99.4 3.9E-13 1.4E-17 108.7 10.2 77 17-102 151-228 (229)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.7E-17 93.4 9.7 64 27-102 27-90 (100)
204 3s6e_A RNA-binding protein 39; 99.3 4.4E-12 1.5E-16 92.8 5.4 79 16-103 6-94 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 5.4E-10 1.8E-14 82.4 9.1 77 14-99 15-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.4E-10 8.1E-15 79.9 6.5 73 16-102 6-86 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 5.5E-10 1.9E-14 89.7 7.2 71 29-105 141-216 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 7.4E-09 2.5E-13 72.8 5.5 73 14-100 12-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 6.8E-07 2.3E-11 64.3 7.3 73 16-99 20-97 (117)
210 1wey_A Calcipressin 1; structu 97.8 0.00012 4.1E-09 52.0 8.0 78 15-103 3-85 (104)
211 1uw4_A UPF3X; nonsense mediate 97.5 0.00087 3E-08 46.6 8.9 69 18-86 2-71 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.4 0.0038 1.3E-07 44.2 11.3 72 15-100 6-82 (104)
213 3ctr_A Poly(A)-specific ribonu 96.7 0.0028 9.6E-08 44.6 5.6 54 19-81 7-60 (101)
214 1whv_A Poly(A)-specific ribonu 96.7 0.0037 1.3E-07 43.8 5.7 53 20-81 18-70 (100)
215 3pq1_A Poly(A) RNA polymerase; 96.3 0.0023 7.7E-08 56.9 3.6 55 17-78 53-107 (464)
216 2l08_A Regulator of nonsense t 96.2 0.0071 2.4E-07 42.4 4.8 69 17-86 9-79 (97)
217 2i2y_A Fusion protein consists 96.2 0.008 2.7E-07 44.5 5.4 38 59-101 12-50 (150)
218 2kn4_A Immunoglobulin G-bindin 96.1 0.018 6.1E-07 42.8 7.1 35 46-83 2-36 (158)
219 1wwh_A Nucleoporin 35, nucleop 95.8 0.04 1.4E-06 39.9 7.7 73 15-99 22-94 (119)
220 3p3d_A Nucleoporin 53; structu 94.0 0.05 1.7E-06 40.1 3.9 78 18-101 8-98 (132)
221 3d45_A Poly(A)-specific ribonu 89.7 0.84 2.9E-05 40.7 7.4 55 19-83 442-496 (507)
222 2g0c_A ATP-dependent RNA helic 65.6 23 0.00078 22.4 6.9 68 19-100 2-75 (76)
223 4e8u_A Putative uncharacterize 65.6 13 0.00044 28.3 5.6 52 18-73 13-75 (172)
224 4eyt_A Telomerase associated p 58.3 41 0.0014 22.9 6.9 57 16-81 11-67 (129)
225 3fut_A Dimethyladenosine trans 35.1 41 0.0014 27.0 4.3 33 17-50 110-142 (271)
226 1gmj_A ATPase inhibitor; coile 30.3 1.2E+02 0.0041 20.1 6.5 37 144-180 31-67 (84)
227 3uzu_A Ribosomal RNA small sub 28.1 20 0.00068 29.0 1.3 33 18-50 115-147 (279)
228 3pgw_S U1-70K; protein-RNA com 26.0 8 0.00027 33.6 -1.6 42 34-77 9-58 (437)
229 2o1k_A NS28, non-structural gl 25.2 62 0.0021 19.3 2.7 12 161-172 28-39 (52)
230 3ts2_A Protein LIN-28 homolog 25.1 13 0.00046 27.3 -0.3 28 32-68 2-29 (148)
231 2kvo_A Photosystem II reaction 23.9 71 0.0024 22.7 3.3 77 44-133 15-96 (120)
232 4bby_A Alkyldihydroxyacetoneph 21.2 90 0.0031 28.4 4.4 56 24-81 350-409 (658)
233 3lpe_A Putative transcription 20.7 66 0.0023 21.4 2.6 34 44-83 40-73 (92)
234 3tqs_A Ribosomal RNA small sub 20.4 28 0.00096 27.7 0.7 31 20-50 99-129 (255)
235 3fry_A Probable copper-exporti 20.1 1.5E+02 0.0051 17.6 4.8 54 18-79 7-60 (73)
236 1qyr_A KSGA, high level kasuga 20.1 70 0.0024 25.2 3.0 30 18-47 91-120 (252)
No 1
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=8.4e-23 Score=169.17 Aligned_cols=154 Identities=22% Similarity=0.292 Sum_probs=133.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++|||+|||+.+|+++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..||+..+.+++.+++|.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRA--TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCE--EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCc--CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46899999999999999999999999999999999989998 9999999999999999999998888888888999999
Q ss_pred EecccccCCCC-CCC---------CCCcccccccCCCCchhHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 029074 97 RAAEVEMFDDH-PAK---------PGQRIQFQWLDPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETL 166 (199)
Q Consensus 97 ~~a~~e~~~~~-p~~---------p~~~~~~r~~~~~~~~~~~~~~~k~l~~~~~~e~~~~~k~~~~~~~~l~~~q~e~l 166 (199)
.++.+....+. |.+ ..+....+|..|++.+|+++++|+.+.+.+......+.+++.+++++|++|++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~ 253 (261)
T 3sde_A 174 EPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAAR 253 (261)
T ss_dssp EECCCEESSSCCCGGGSCCCHHHHHHHTSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCccCCCcchhhhcchhhhhhccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986432211 100 01122368899999999999999999999888889999999999999999999998
Q ss_pred HHhHhh
Q 029074 167 KQNYKK 172 (199)
Q Consensus 167 ~~~~~~ 172 (199)
..|.-.
T Consensus 254 ~~~~~~ 259 (261)
T 3sde_A 254 HEHQLM 259 (261)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 887654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=144.72 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=76.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+++|++||.|.+|++++| .+|.+ +|||||+|.+.++|..|++.|||..+. |++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~--kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS--LGYGFVNYVTAKDAERAINTLNGLRLQ----SKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcc--cccEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3578999999999999999999999999999999999 78998 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.+|+|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999986
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=137.92 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=76.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.+++| .||++ +|||||+|.+.++|..|++.|||..+. |++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~--rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~ 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKH--LGLARVLFTSTRGAKETVKNLHLTSVM----GNI 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCce--eeEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 45789999999999999999999999999999999999 78998 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++..
T Consensus 78 i~V~~a~~ 85 (110)
T 3s8s_A 78 IHAQLDIK 85 (110)
T ss_dssp CEEEECST
T ss_pred EEEEECCC
Confidence 99998853
No 4
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.9e-21 Score=134.67 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=71.3
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCC--ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFG--NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG--~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.+|||||||+.+|+++|+++|++|| .|.+|+++.+ .+|.+ +|||||+|.+.++|..|++.|||..+. |++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~--kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQS--KGFALVGVGSEASSKKLMDLLPKRELH----GQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCE--EEEEEECC-CHHHHHHHHHHGGGSCSS----SCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCcc--CcEEEEEECCHHHHHHHHHHcCCCeeC----CEEE
Confidence 5899999999999999999999999 9999999999 79998 999999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.|.
T Consensus 76 ~V~~~~~~ 83 (90)
T 3p5t_L 76 VVTPSNKL 83 (90)
T ss_dssp EECCC---
T ss_pred EEEECCCC
Confidence 99998763
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.2e-20 Score=128.86 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=77.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRS--KGYGFITFSDSECARRALEQLNGFELA----GRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCC--CSEEEEEESCHHHHHHHHHHHTTCCSS----SSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCce--eeEEEEEECCHHHHHHHHHHhCCCeeC----CcEE
Confidence 4689999999999999999999999999999999999 78887 999999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 78 ~V~~a~~~ 85 (95)
T 2dnz_A 78 RVGHVTER 85 (95)
T ss_dssp EEEESSCC
T ss_pred EEEEcccc
Confidence 99999764
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=9.4e-20 Score=129.43 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=76.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+. |||..+. |++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~ 80 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRP--RGFGFITFEDEQSVDQAVN-MHFHDIM----GKK 80 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSC--CSEEEEEESSHHHHHHHHH-HCCCBSS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCC--CceEEEEECCHHHHHHHHH-hCCCEEC----CeE
Confidence 45689999999999999999999999999999999999 78887 9999999999999999998 9999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 81 l~V~~a~~~ 89 (99)
T 2dgs_A 81 VEVKRAEPR 89 (99)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999864
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=129.93 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=77.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKP--KGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCC--CSEEEEEESSHHHHHHHHHHTTTEESS----SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCc--CeEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 35689999999999999999999999999999999999 58887 999999999999999999999999999 999
Q ss_pred eEEEeccccc
Q 029074 94 VRARAAEVEM 103 (199)
Q Consensus 94 l~v~~a~~e~ 103 (199)
|+|.++.+..
T Consensus 80 l~V~~a~~~~ 89 (99)
T 1whw_A 80 LHVLPSTIKK 89 (99)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEcCCCc
Confidence 9999998743
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=4.7e-21 Score=134.99 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhC-CCceeccCCCcc
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLH-EFPFMMSGMPRP 93 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~ln-g~~~~~~g~gr~ 93 (199)
+++|||+|||+.+|+++|+++|++|| .|.+|++++| .+|.+ +|||||+|.+.++|..|++.++ +..+. |++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~--rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS--RGFAFVEFSHLQDATRWMEANQHSLNIL----GQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCC--SSEEEEECSSHHHHHHHHHTTTTEEEET----TEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCc--CceEEEEecCHHHHHHHHHhcCCCeEEC----CEE
Confidence 47899999999999999999999999 8999999999 88998 9999999999999999999874 55677 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.+|.|
T Consensus 75 i~V~~a~~ 82 (91)
T 2lxi_A 75 VSMHYSDP 82 (91)
T ss_dssp EEEECCCS
T ss_pred EEEEEcCC
Confidence 99999975
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=6.2e-21 Score=136.45 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=76.6
Q ss_pred cCCCEEEecCCCC------CCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 15 KVKRTVYLDNLSP------QVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 15 ~~~rtlfVgnLp~------~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
...++|||+|||+ .+++++|+++|++||.|.+|+++.+ .||++ +|||||+|.+.++|..|+..|||..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~--kG~afV~f~~~~~A~~Ai~~lng~~~~- 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKT--KGFLFVECGSMNDAKKIIKSFHGKRLD- 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEE--CSEEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCcc--ceEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 3468999999999 9999999999999999999999999 77998 999999999999999999999999999
Q ss_pred cCCC-cceEEEeccc
Q 029074 88 SGMP-RPVRARAAEV 101 (199)
Q Consensus 88 ~g~g-r~l~v~~a~~ 101 (199)
| ++|+|.+|.|
T Consensus 81 ---g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 ---LKHRLFLYTMKD 92 (100)
T ss_dssp ---SSCBCEEEESHH
T ss_pred ---CCeEEEEEECch
Confidence 9 9999999875
No 10
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=130.30 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=77.2
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ +|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRS--KGFGFVCFSSPEEATKAVTEMNGRIVA----TKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSE--EEEEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCc--CEEEEEEECCHHHHHHHHHHhCCCEeC----CcE
Confidence 345789999999999999999999999999999999998 8887 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (103)
T 2d9p_A 85 LYVALAQRK 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEEeccc
Confidence 999999864
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=6.6e-20 Score=125.80 Aligned_cols=78 Identities=17% Similarity=0.255 Sum_probs=75.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.+|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|+|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS--RGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE--EEEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCc--cceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEE
Confidence 58999999999999999999999999999999999 88987 999999999999999999999999998 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
.++.+
T Consensus 76 ~~a~~ 80 (83)
T 3md1_A 76 NWAAK 80 (83)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 99975
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=132.32 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=77.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKH--RGFAFVEFELAEDAAAAIDNMNESELF----GRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCC--SSEEEECCSSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 35689999999999999999999999999999999999 88887 999999999999999999999999999 999
Q ss_pred eEEEeccccc
Q 029074 94 VRARAAEVEM 103 (199)
Q Consensus 94 l~v~~a~~e~ 103 (199)
|+|.++.+..
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998753
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=133.16 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCc--eEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGN--VKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~--V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.-.||||+|||+.+|+++|+++|++||. |.+|++++| .||.+ +|||||+|.+.++|..|++.|||....+...||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~s--rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQN--RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSC--SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCC--ceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 4468999999999999999999999995 679999999 88998 999999999999999999999997521112299
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=126.88 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=75.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKS--KGYGFVSFFNKWDAENAIQQMGGQWLG----GRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 4578999999999999999999999999999999999 78887 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 79 ~v~~a~~ 85 (87)
T 3bs9_A 79 RTNWATR 85 (87)
T ss_dssp EEEEEC-
T ss_pred EEEecCC
Confidence 9999875
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.4e-20 Score=126.79 Aligned_cols=80 Identities=26% Similarity=0.436 Sum_probs=75.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKH--RGFAFVEFELAEDAAAAIDNMNESELF----GRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEE--CSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCcc--ccEEEEEECCHHHHHHHHHHhCCCEEC----CcE
Confidence 45689999999999999999999999999999999998 88887 999999999999999999999999999 999
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
|+|.+|+
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999874
No 16
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=129.52 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=76.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-C---CCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-Y---TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~---tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ . |+.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~---- 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLS--MGFGFVEYKKPEQAQKALKQLQGHTVD---- 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEE--EEEEEEEESSHHHHHHHHHHSTTCEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCc--ccEEEEEECCHHHHHHHHHHhCCCeeC----
Confidence 34689999999999999999999999999999999988 4 4576 999999999999999999999999999
Q ss_pred CcceEEEeccccc
Q 029074 91 PRPVRARAAEVEM 103 (199)
Q Consensus 91 gr~l~v~~a~~e~ 103 (199)
|++|+|.++.+..
T Consensus 77 g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 GHKLEVRISERAT 89 (98)
T ss_dssp TEECEEECSSCSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999998643
No 17
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=130.29 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=77.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAP--RGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSB--CSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCC--CeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 34689999999999999999999999999999999998 77887 999999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (103)
T 2dnm_A 85 LRVQVARYG 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEECCcC
Confidence 999999864
No 18
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.8e-19 Score=129.14 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=77.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. +|.+++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~-gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS--KGCAFVKFSSHTEAQAAIHALHGSQTM-PGASSSL 89 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCE--EEEEEEEESSHHHHHHHHHHHSSCCCC-TTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc--CcEEEEEeCCHHHHHHHHHHHcCCccC-CCCCccE
Confidence 3468999999999999999999999999999999999988887 999999999999999999999999887 2223999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+|.+.
T Consensus 90 ~V~~a~~~ 97 (105)
T 2dnh_A 90 VVKFADTD 97 (105)
T ss_dssp EEEESCSS
T ss_pred EEEECccC
Confidence 99999864
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=9.7e-20 Score=128.77 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=76.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRS--KGYAFIEFRDLESSASAVRNLNGYQLG----SRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCB--CSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEE
Confidence 589999999999999999999999999999999999 78887 999999999999999999999999999 99999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++.+.
T Consensus 76 V~~a~~~ 82 (96)
T 2x1f_A 76 CGYSSNS 82 (96)
T ss_dssp EEECSCS
T ss_pred EEEcCCC
Confidence 9999763
No 20
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=132.42 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=78.7
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+++++|+++|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~ 77 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKS--RGFAFITFENPADAKNAAKDMNGKSLH----GKA 77 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTC--CCEEEEECSSHHHHHHHHHHCSSCBCS----SSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCc--ccEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 34568999999999999999999999999999999999988887 999999999999999999999999999 999
Q ss_pred eEEEeccccc
Q 029074 94 VRARAAEVEM 103 (199)
Q Consensus 94 l~v~~a~~e~ 103 (199)
|+|.++.+..
T Consensus 78 l~V~~a~~~~ 87 (116)
T 2fy1_A 78 IKVEQAKKPS 87 (116)
T ss_dssp CEEEECCCSS
T ss_pred EEEEECCCCC
Confidence 9999998654
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=129.50 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=77.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQH--QGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSB--CSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcC--CcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 45689999999999999999999999999999999999 68887 999999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999864
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.4e-20 Score=128.73 Aligned_cols=81 Identities=14% Similarity=0.313 Sum_probs=77.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEE-EEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNV-QFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v-~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
..++|||+|||+.+++++|+.+|++||.|.+| .++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS--KGYAFINFASFDASDAAIEAMNGQYLC----NRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSC--CSEEEEEBSSHHHHHHHHHTTTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCc--CeEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 46899999999999999999999999999999 99999 88988 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 78 l~v~~a~~~ 86 (96)
T 1x5t_A 78 ITVSYAFKK 86 (96)
T ss_dssp CEEEESCCC
T ss_pred EEEEEeccc
Confidence 999999764
No 23
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.2e-19 Score=130.24 Aligned_cols=86 Identities=19% Similarity=0.463 Sum_probs=77.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. .+.++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~-~~~g~ 86 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMH--KGCAFLTYCERESALKAQSALHEQKTL-PGMNR 86 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSC--CSEEEEEESSHHHHHHHHHHHTTTCCC-TTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCc--ceEEEEEECCHHHHHHHHHHhcCCccc-CCCCc
Confidence 345689999999999999999999999999999999999 78888 999999999999999999999999871 23399
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 9999999864
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=131.95 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=77.8
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.....++|||+|||+.+++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 86 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP--KGLAYVEYENESQASQAVMKMDGMTIK----EN 86 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCE--EEEEEEEESSHHHHHHHHHHHTTEESS----SC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCE--EeEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 345578999999999999999999999999999999999988887 999999999999999999999999998 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.++.+
T Consensus 87 ~l~v~~a~~ 95 (100)
T 2do4_A 87 IIKVAISNS 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 999999975
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=129.51 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=76.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .++.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRS--RGFGFVTFENIDDAKDAMMAMNGKSVD----GRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSC--CSEEEEECSSHHHHHHHHHHHTTCCTT----SCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCc--ccEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 4689999999999999999999999999999999998 78887 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 99999764
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=128.87 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=77.6
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCC--CCCCCCceEEEEEecCHHHHHHHHHHh-CCCceeccCC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNY--TEFRNIPHCALVEMENLKQAKDVVTSL-HEFPFMMSGM 90 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~--tg~s~~~G~afVef~~~~~A~~Ai~~l-ng~~~~~~g~ 90 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+. +|.+ +|||||+|.+.++|..|+..| ||..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~~---- 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAH--RGFGFVDFITKQDAKKAFNALCHSTHLY---- 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSS--CSEEEEEESSHHHHHHHHHHHHTCCBSS----
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCc--CceEEEEECCHHHHHHHHHHhccCCeEC----
Confidence 4456899999999999999999999999999999999873 7887 999999999999999999999 999999
Q ss_pred CcceEEEeccccc
Q 029074 91 PRPVRARAAEVEM 103 (199)
Q Consensus 91 gr~l~v~~a~~e~ 103 (199)
|++|+|.++.+..
T Consensus 86 g~~l~v~~a~~~~ 98 (107)
T 2cph_A 86 GRRLVLEWADSEV 98 (107)
T ss_dssp SCBCEEEECCCCC
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998753
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=130.30 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=77.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhC------CCceec
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLH------EFPFMM 87 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~ln------g~~~~~ 87 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|| |..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHS--KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCB--CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCC--ccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 34688999999999999999999999999999999999 78887 9999999999999999999999 99888
Q ss_pred cCCCcceEEEecccc
Q 029074 88 SGMPRPVRARAAEVE 102 (199)
Q Consensus 88 ~g~gr~l~v~~a~~e 102 (199)
|++|+|.++.+.
T Consensus 90 ---g~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 ---GRQLKVDLAVTR 101 (111)
T ss_dssp ---SCEEEEECCCCC
T ss_pred ---CEEEEEEECCCC
Confidence 999999999864
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.2e-20 Score=131.72 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=74.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||||||+.+|+++|+++|++||.|.+|+++++..|.+ +|||||+|.+.++|..|+. ++|..+. |++|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~--rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAF--KGSIFVVFDSIESAKKFVE-TPGQKYK----ETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSC--CCEEEEEESSHHHHHHHHT-SSCCCCT----TTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCC--ccEEEEEECCHHHHHHHHH-cCCCEEC----CEEE
Confidence 3458999999999999999999999999999999999955887 9999999999999999999 8999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998753
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=9.8e-20 Score=133.33 Aligned_cols=79 Identities=13% Similarity=0.255 Sum_probs=73.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
..+|||||||+.+++++|+++|++||.|.+|++++|.. .+ +|||||+|.+.++|..|+..|||..+. |++|+|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~--kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GS--KGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EE--EEEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CC--CceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 57899999999999999999999999999999999843 35 999999999999999999999999999 999999
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
.++.+.
T Consensus 78 ~~a~~~ 83 (115)
T 4f25_A 78 GRFKSR 83 (115)
T ss_dssp EESSCC
T ss_pred EECCCc
Confidence 998753
No 30
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=127.72 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=76.7
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.....++|||+|||+.+++++|+++|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKP--KSFGFVCFKHPESVSYAIALLNGIRLY----GR 85 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE--EEEEEEEESSTHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC--ceEEEEEECCHHHHHHHHHHhCCCEEC----CC
Confidence 345568999999999999999999999999999999999966887 999999999999999999999999999 99
Q ss_pred ceEEEecc
Q 029074 93 PVRARAAE 100 (199)
Q Consensus 93 ~l~v~~a~ 100 (199)
+|+|.+++
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99999885
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.5e-19 Score=131.80 Aligned_cols=82 Identities=13% Similarity=0.247 Sum_probs=77.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 96 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS--KCFGFVSYDNPVSAQAAIQSMNGFQIG----MKR 96 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSE--EEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCc--CccEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 34589999999999999999999999999999999999 68887 999999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 999999864
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=128.95 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=77.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS--KGFAFISFHRREDAARAIAGVSGFGYD----HL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSE--EEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCce--eeEEEEEECCHHHHHHHHHHcCCCeeC----Cc
Confidence 345688999999999999999999999999999999999 78887 999999999999999999999999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 86 ~l~v~~a~~~ 95 (103)
T 2cq0_A 86 ILNVEWAKPS 95 (103)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9999999764
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=128.59 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=77.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhcc-CCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc-eeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQ-FGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP-FMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~-fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~-~~~~g~gr 92 (199)
...++|||+|||+.+++++|+.+|++ ||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||.. +. |+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~ 80 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGFVKFTDELEQKRALTECQGAVGLG----SK 80 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCE--EEEEEEEESCHHHHHHHHHHTTTCCSSS----SS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCc--cceEEEEECCHHHHHHHHHHccCCcccC----CE
Confidence 34688999999999999999999999 99999999999988887 9999999999999999999999999 88 99
Q ss_pred ceEEEeccccc
Q 029074 93 PVRARAAEVEM 103 (199)
Q Consensus 93 ~l~v~~a~~e~ 103 (199)
+|+|.++.+..
T Consensus 81 ~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 PVRLSVAIPKA 91 (104)
T ss_dssp CCCCCBCCCCC
T ss_pred eEEEEEccCCC
Confidence 99999997643
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.1e-19 Score=124.82 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+ .|||..+. |++|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l 77 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHP--KGFAYIEFSDKESVRTSL-ALDESLFR----GRQI 77 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSC--CEEEEEEESSTHHHHHHG-GGTTCEET----TEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCc--ceEEEEEECCHHHHHHHH-hcCCCEEC----CcEE
Confidence 3589999999999999999999999999999999999 78998 999999999999999999 99999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++++
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9999875
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=127.34 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=75.3
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+..+ + +|||||+|.+.++|..|+..|||..+. |++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-N--DPYCFVEFYEHRDAAAALAAMNGRKIL----GKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-S--CCEEEEEESSHHHHHHHHHHHTTEEET----TEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-C--CCEEEEEECCHHHHHHHHHHhCCCCcC----CCe
Confidence 345689999999999999999999999999999999998433 4 899999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (103)
T 2cqi_A 85 VKVNWATTP 93 (103)
T ss_dssp EEEEECCCT
T ss_pred EEEEECCCC
Confidence 999999864
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=129.23 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=75.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL--KGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSE--EEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCce--eeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 4578999999999999999999999999999999999 78887 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.+|.+
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9999975
No 37
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-19 Score=125.80 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=75.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+..+ + +|||||+|.+.++|..|+..|||..|. |++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S--KGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-T--CCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-C--cEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 45689999999999999999999999999999999998544 5 999999999999999999999999999 9999
Q ss_pred EEEeccccc
Q 029074 95 RARAAEVEM 103 (199)
Q Consensus 95 ~v~~a~~e~ 103 (199)
+|.++.+..
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999998743
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.8e-19 Score=129.01 Aligned_cols=82 Identities=20% Similarity=0.281 Sum_probs=77.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKS--KGYGFVSFFNKWDAENAIQQMGGQWLG----GRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 45689999999999999999999999999999999999 78887 999999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 87 l~V~~a~~~ 95 (115)
T 2dgo_A 87 IRTNWATRK 95 (115)
T ss_dssp CEEEESSCC
T ss_pred EEEEEccCC
Confidence 999999764
No 39
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=126.42 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=75.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKS--KGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCC--TTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCc--ccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 45689999999999999999999999999999999999 77887 999999999999999999999999999 999
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
|+|.+|+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999874
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=127.97 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=75.9
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CC-CCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YT-EFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~t-g~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
....++|||+|||+.+++++|+.+|++|| |.+|.++.+ .+ |.+ +|||||+|.+.++|..|+ .|||..+. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~--~g~afV~f~~~~~a~~A~-~l~g~~~~----g 83 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERL--KGFGYAEFEDLDSLLSAL-SLNEESLG----N 83 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSB--CSCEEEEESSHHHHHHHH-GGGTCEET----T
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCc--CeEEEEEECCHHHHHHHH-hcCCCEeC----C
Confidence 44568999999999999999999999999 999999999 55 887 999999999999999999 99999999 9
Q ss_pred cceEEEeccccc
Q 029074 92 RPVRARAAEVEM 103 (199)
Q Consensus 92 r~l~v~~a~~e~ 103 (199)
++|+|.++.+..
T Consensus 84 ~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 KRIRVDVADQAQ 95 (104)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEEccCCC
Confidence 999999998754
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=125.51 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=74.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCC-CCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEF-RNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~-s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ .++. + +|||||+|.+.++|..|+..|||..+. |++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLS--KGYAYVEFENPDEAEKALKHMDGGQID----GQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEE--CSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCC--CcEEEEEEecHHHHHHHHHHcCCCeEC----CeE
Confidence 4689999999999999999999999999999999988 4544 5 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++.+
T Consensus 77 l~v~~a~~ 84 (88)
T 4a8x_A 77 ITATAVLA 84 (88)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99999875
No 42
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=127.07 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=76.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceE-EEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVK-NVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~-~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
...++|||+|||+.+++++|+++|++||.|. +|+++++ .+|.+ +|||||+|.+.++|+.|+..|||..+. |+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 80 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIP--AGYCFVEFADLATAEKCLHKINGKPLP----GA 80 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCE--EEEEEEECSCHHHHHHHHHTTTTSEES----SC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCc--CCEEEEEeCCHHHHHHHHHHHcCCccC----CC
Confidence 3568999999999999999999999999999 9999999 78887 999999999999999999999999998 88
Q ss_pred c----eEEEecccc
Q 029074 93 P----VRARAAEVE 102 (199)
Q Consensus 93 ~----l~v~~a~~e 102 (199)
. |+|.+|.+.
T Consensus 81 ~~~~~l~v~~a~~~ 94 (99)
T 2div_A 81 TPAKRFKLNYATYS 94 (99)
T ss_dssp SSCEECCEEETTCC
T ss_pred CcceeEEEeecCCC
Confidence 8 999999763
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=128.12 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=77.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS--RGIGTVTFEQSIEAVQAISMFNGQLLF----DRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCe--eeEEEEEECCHHHHHHHHHHhCCCEeC----CCEE
Confidence 4568999999999999999999999999999999999977887 999999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998753
No 44
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=126.96 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=74.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEE--------EEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKN--------VQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~--------v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
..++|||||||+.+++++|+++|++||.|.. |+++.+ .+|.+ +|||||+|.+.++|..|++.|||..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~--~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL--KGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSE--EEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCe--eeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4578999999999999999999999999999 999999 88988 999999999999999999999999999
Q ss_pred ccCCCcceEEEecc
Q 029074 87 MSGMPRPVRARAAE 100 (199)
Q Consensus 87 ~~g~gr~l~v~~a~ 100 (199)
|++|+|.+|+
T Consensus 90 ----g~~l~V~~A~ 99 (99)
T 2la6_A 90 ----GNPIKVSFAT 99 (99)
T ss_dssp ----SSBCEEEECC
T ss_pred ----CcEEEEEecC
Confidence 9999999874
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.5e-19 Score=126.84 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=75.5
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++|| |.+|.++.+ .+|.+ +|||||+|.+.++|..|+ .|||..+. |+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKF--KGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSE--EEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCcc--ceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 34568999999999999999999999997 999999999 78987 999999999999999999 89999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dng_A 84 SLRVDIAEGR 93 (103)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=129.79 Aligned_cols=84 Identities=20% Similarity=0.172 Sum_probs=78.2
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceE--------EEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVK--------NVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~--------~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
+....++|||+|||+.+++++|+++|++||.|. .|+++.+ .+|.+ +|||||+|.+.++|..|+..|||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP--KGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSB--CSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCe--eeEEEEEECCHHHHHHHHHHcCCC
Confidence 345678999999999999999999999999999 6999999 88997 999999999999999999999999
Q ss_pred ceeccCCCcceEEEecccc
Q 029074 84 PFMMSGMPRPVRARAAEVE 102 (199)
Q Consensus 84 ~~~~~g~gr~l~v~~a~~e 102 (199)
.|. |++|+|.++.+.
T Consensus 89 ~~~----g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQ----GSKLKVSLARKK 103 (113)
T ss_dssp EET----TEECEEECSSCC
T ss_pred ccC----CCEEEEEECCCC
Confidence 999 999999999764
No 47
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=138.76 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC--ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFG--NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG--~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
..++|||||||+.+|+++|+.+|++|| .|.+|+++.| .+|.+ +|||||+|.+.++|..||..|||..|. |+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~s--kGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQS--KGYAEVVVASENSVHKLLELLPGKVLN----GE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCE--EEEEEEEESCHHHHHHHHHHSTTCEET----TE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHcCCCEEC----Ce
Confidence 357999999999999999999999999 9999999999 89998 999999999999999999999999999 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.+|.+
T Consensus 128 ~l~V~~a~~ 136 (156)
T 3n9u_C 128 KVDVRPATR 136 (156)
T ss_dssp ECEEEECCH
T ss_pred EeEEEEcCC
Confidence 999998864
No 48
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=3.8e-20 Score=129.15 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=72.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++|||||||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.+ |..|+..|||..+. |++|+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKP--KGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCC--CEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCc--ceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEE
Confidence 68999999999999999999999999999999999 78888 999999999999 99999999999999 999999
Q ss_pred Eecccc
Q 029074 97 RAAEVE 102 (199)
Q Consensus 97 ~~a~~e 102 (199)
.+|.+.
T Consensus 75 ~~a~~~ 80 (90)
T 2ki2_A 75 TEANPK 80 (90)
T ss_dssp EEC---
T ss_pred EEcCCC
Confidence 999764
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=129.42 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=76.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~~ 97 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS--KGYGFITFSDSECAKKALEQLNGFELA----GRP 97 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEE--EEEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCcc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 34578999999999999999999999999999999998 78887 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++++
T Consensus 98 l~V~~a~~ 105 (108)
T 2jrs_A 98 MKVGHVTE 105 (108)
T ss_dssp CEEECSCS
T ss_pred EEEEEccc
Confidence 99999875
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=125.85 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=75.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 87 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS--RGFAFVYFENVDDAKEAKERANGMELD----GRRI 87 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSE--EEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCc--ccEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 4578999999999999999999999999999999999 77887 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.+|+.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9998864
No 51
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=132.25 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=75.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+ .|||..|. |++|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 96 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRS--KGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPI 96 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSC--CCCEEEEESCGGGHHHHH-HHTTEEET----TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCcc--CcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEE
Confidence 3589999999999999999999999999999999999 77887 999999999999999999 99999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 97 ~V~~a~~~ 104 (114)
T 2cq4_A 97 IVQASQAE 104 (114)
T ss_dssp EEEEHHHH
T ss_pred EEEecCCC
Confidence 99999764
No 52
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=128.08 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=76.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP--KGYGFCEYQDQETALSAMRNLNGREFS----GRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEE--EEEEEEECSCHHHHHHHHHHSSSBSCS----SSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCeeC----CcEE
Confidence 3589999999999999999999999999999999999 78887 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 81 ~v~~a~~~ 88 (104)
T 1p1t_A 81 RVDNAASE 88 (104)
T ss_dssp EEEETTCT
T ss_pred EEEeCCCc
Confidence 99999753
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.7e-19 Score=128.65 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=76.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 97 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFS--KGYALVEYETHKQALAAKEALNGAEIM----GQT 97 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSB--CSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 34578999999999999999999999999999999999 78887 999999999999999999999999998 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++.+
T Consensus 98 l~V~~a~~ 105 (110)
T 1oo0_B 98 IQVDWCFV 105 (110)
T ss_dssp CEEEESEE
T ss_pred EEEEEccc
Confidence 99999975
No 54
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.8e-19 Score=121.58 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=70.3
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
+|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|+.|++ +||..+. |++|+|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRH--RGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTS--CBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc--CcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEE
Confidence 5899999999999999999999999999999999 68887 9999999999999999998 9999999 9999998
Q ss_pred ec
Q 029074 98 AA 99 (199)
Q Consensus 98 ~a 99 (199)
+|
T Consensus 74 ~A 75 (75)
T 2mss_A 74 KA 75 (75)
T ss_dssp CC
T ss_pred eC
Confidence 75
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=5.6e-19 Score=122.39 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=72.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
+...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+. +++..+. |+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~-~~~~~~~----g~ 80 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS--RGFGFILFKDAASVEKVLD-QKEHRLD----GR 80 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE--EEEEEEEESSTHHHHHHHH-SSCEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcc--ccEEEEEECCHHHHHHHHH-hCCCEEC----CE
Confidence 456789999999999999999999999999999999999 78987 9999999999999999996 5788888 99
Q ss_pred ceEEEec
Q 029074 93 PVRARAA 99 (199)
Q Consensus 93 ~l~v~~a 99 (199)
+|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 56
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=7e-19 Score=130.02 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=77.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 107 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRS--LGTADVHFERRADALKAMKQYKGVPLD----GRPMD 107 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSC--CSEEEEEESSHHHHHHHHHHHTTEESS----SCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCE--eeEEEEEECCHHHHHHHHHHcCCCEEC----CcEEE
Confidence 457899999999999999999999999999999999888887 999999999999999999999999998 99999
Q ss_pred EEeccccc
Q 029074 96 ARAAEVEM 103 (199)
Q Consensus 96 v~~a~~e~ 103 (199)
|.+|.+..
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99998643
No 57
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=128.98 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=75.8
Q ss_pred hccCCCEEEecCCCCCCCHHHHH---HHhccCCceEEEEEeeC-CCCCC-CCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIR---TALDQFGNVKNVQFIPN-YTEFR-NIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~---~~F~~fG~V~~v~v~~d-~tg~s-~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
.....++|||+|||+.+++++|+ ++|++||.|.+|.++.+ .++.+ ..+|||||+|.+.++|..|+..|||..|.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD- 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET-
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC-
Confidence 34556899999999999999999 99999999999999988 44432 02799999999999999999999999999
Q ss_pred cCCCcceEEEecccc
Q 029074 88 SGMPRPVRARAAEVE 102 (199)
Q Consensus 88 ~g~gr~l~v~~a~~e 102 (199)
|++|+|.+|.+.
T Consensus 90 ---gr~l~V~~a~~k 101 (111)
T 2cpi_A 90 ---GRTLKASLGTTK 101 (111)
T ss_dssp ---TEEEEEESCCCC
T ss_pred ---CEEEEEEecccc
Confidence 999999999764
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=127.69 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=77.2
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
.+...++|||+|||+.+++++|+.+|++||.|.+|+++.+ .++.+ +|||||+|.+.++|..|+..+++ .|. |
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~Ai~~~~~-~~~----g 85 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS--RGYGFVTMADRAAAERACKDPNP-IID----G 85 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCC--CSEEEEEESSHHHHHHHHTCSSC-EET----T
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCcc--ceEEEEEECCHHHHHHHHHhCCC-cCC----C
Confidence 4556789999999999999999999999999999999999 78888 99999999999999999999998 788 9
Q ss_pred cceEEEecccc
Q 029074 92 RPVRARAAEVE 102 (199)
Q Consensus 92 r~l~v~~a~~e 102 (199)
++|+|.++.+.
T Consensus 86 ~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 RKANVNLAYLG 96 (116)
T ss_dssp EECEEEESTTT
T ss_pred EEEEEEEcccC
Confidence 99999999754
No 59
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.2e-19 Score=129.90 Aligned_cols=81 Identities=14% Similarity=0.276 Sum_probs=75.3
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+++|++||.|.+|+++.+ .+|.+ +|||||+|.+.++|..|++.|||..+. |+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLS--KCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCC--CCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCc--CcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 345688999999999999999999999999999999999 78887 999999999999999999999999999 99
Q ss_pred ceEEEecc
Q 029074 93 PVRARAAE 100 (199)
Q Consensus 93 ~l~v~~a~ 100 (199)
+|+|.+++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999874
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=6.5e-19 Score=126.62 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 101 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRS--LGTADVHFERKADALKAMKQYNGVPLD----GRPMN 101 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 457899999999999999999999999999999999988887 999999999999999999999999999 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|.+|.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=132.34 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=77.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS--RGYGFVKFQSGSSAQQAIAGLNGFNIL----NK 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEE--EEEEEEEESSHHHHHHHHHHTTTEECS----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 345689999999999999999999999999999999999 78887 999999999999999999999999998 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9999999864
No 62
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=128.60 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=70.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC--CceeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHE--FPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng--~~~~~~g~gr 92 (199)
...++|||+|||+.+|+++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++ ..+. |+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr 82 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQ 82 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTSCCEET----TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhccCCceEC----CE
Confidence 34689999999999999999999999999999999875 89999999999999999998875 5677 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.+|.+.
T Consensus 83 ~l~V~~A~~~ 92 (105)
T 1sjq_A 83 PIYIQFSNHK 92 (105)
T ss_dssp ECCBCCCSSS
T ss_pred EEEEEEcCCC
Confidence 9999999753
No 63
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=127.28 Aligned_cols=87 Identities=15% Similarity=0.249 Sum_probs=76.9
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC---
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG--- 89 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g--- 89 (199)
.+...++|||+|||+.+++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+....
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS--RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCE--EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345668999999999999999999999999999999999988887 999999999999999999999999884111
Q ss_pred -CCcceEEEeccc
Q 029074 90 -MPRPVRARAAEV 101 (199)
Q Consensus 90 -~gr~l~v~~a~~ 101 (199)
.+++|+|.+|.|
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 378888888865
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=128.54 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+.+|++||.|..|.++.+ .+|.+ +|||||+|.+.++|..|+.. +|..|. |++|+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~ 99 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS--RGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVE 99 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSC--CSEEEEECSSHHHHHHHHTS-CSEEET----TEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCc--CceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEE
Confidence 489999999999999999999999999999999999 78887 99999999999999999998 999998 99999
Q ss_pred EEeccccc
Q 029074 96 ARAAEVEM 103 (199)
Q Consensus 96 v~~a~~e~ 103 (199)
|.++.+..
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 99998753
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=128.46 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc--eeccCCCc
Q 029074 16 VKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP--FMMSGMPR 92 (199)
Q Consensus 16 ~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~--~~~~g~gr 92 (199)
..++|||+|||+ .+|+++|+.+|++||.|.+|.++++ +|||||+|++.++|..|++.||+.. +. ||
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr 82 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-------INEAFIEMATTEDAQAAVDYYTTTPALVF----GK 82 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-------SSCEEEEESSHHHHHHHHHHHHHSCCEET----TE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHHcCCCceEC----Cc
Confidence 568999999999 9999999999999999999999865 7999999999999999999998765 77 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.+|..
T Consensus 83 ~l~V~~a~~ 91 (102)
T 1x4d_A 83 PVRVHLSQK 91 (102)
T ss_dssp ECEEEEECC
T ss_pred EEEEEECCC
Confidence 999999975
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=124.34 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=74.9
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+. ++..+. |+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~--~~~~~~----g~ 83 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHS--KGFGFVRFTEYETQVKVMS--QRHMID----GR 83 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSE--EEEEEEEESSHHHHHHHHH--SCEEET----TE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCc--cceEEEEECCHHHHHHHHH--cCCeeC----Ce
Confidence 345678999999999999999999999999999999999 78998 9999999999999999998 466777 99
Q ss_pred ceEEEecccccC
Q 029074 93 PVRARAAEVEMF 104 (199)
Q Consensus 93 ~l~v~~a~~e~~ 104 (199)
+|+|.++.+...
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cqg_A 84 WCDCKLPNSKQS 95 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEEecCCCCc
Confidence 999999987543
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1e-18 Score=122.24 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=75.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ +|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~--~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~ 79 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKS--KGCGVVKFESPEVAERACRMMNGMKLS----GREID 79 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCE--EEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 4689999999999999999999999999999999885 7777 999999999999999999999999999 99999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++++.
T Consensus 80 v~~a~~~ 86 (92)
T 2dgv_A 80 VRIDRNA 86 (92)
T ss_dssp CEECSCC
T ss_pred EEEcCCC
Confidence 9999763
No 68
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=126.19 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=69.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.+++|||+|||+.+|+++|+.+|++||.|.+|.++++ +|||||+|++.++|..|++.|+|.++.+. ||+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-------kg~AFVef~~~~~A~~Av~~ln~~~~~i~--Gr~i~ 90 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-------KRQALVEFEDVLGACNAVNYAADNQIYIA--GHPAF 90 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCEEET--TEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-------CCEEEEEECCHHHHHHHHHHhcCCCceeC--CcEEE
Confidence 4678999999999999999999999999999999853 89999999999999999999999873322 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++++
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 999975
No 69
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=9e-19 Score=129.54 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=76.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+|+++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL--KGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSB--CSCEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 34578999999999999999999999999999999999 68887 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.+|.+.
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 999999764
No 70
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=120.71 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=71.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..++ ..+. |++|+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS--RGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSC--SSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCc--CceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEE
Confidence 57999999999999999999999999999999999 78887 9999999999999999999999 8888 999999
Q ss_pred Eec
Q 029074 97 RAA 99 (199)
Q Consensus 97 ~~a 99 (199)
++|
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 876
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=126.30 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=76.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+.. ||..|. |+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~a~~~-~~~~~~----g~ 85 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS--RGFGFVKFKDPNCVGTVLAS-RPHTLD----GR 85 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCE--EEEEEEEESSTTHHHHHHHH-CSEEET----TE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCc--ceEEEEEECCHHHHHHHHHh-CCCeEC----CE
Confidence 445689999999999999999999999999999999999 78887 99999999999999999998 999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 86 ~l~V~~a~~~ 95 (105)
T 2dh8_A 86 NIDPKPCTPR 95 (105)
T ss_dssp EEBCCCSCCS
T ss_pred EEEEEEccCC
Confidence 9999999764
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=122.80 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCEEEecCCCCCC------CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 17 KRTVYLDNLSPQV------TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 17 ~rtlfVgnLp~~v------te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
+++|||||||+.+ ++++|+.+|++||.|.+|.++ ..+|.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~--~g~afV~f~~~~~A~~Ai~~lng~~~~---- 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKT--KGYIFLEYASPAHAVDAVKNADGYKLD---- 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBC--CCEEEEEESSHHHHHHHHTTSSSCCCS----
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcE--eEEEEEEECCHHHHHHHHHHhcCcccC----
Confidence 4789999999999 779999999999999999987 468887 999999999999999999999999999
Q ss_pred Cc-ceEE
Q 029074 91 PR-PVRA 96 (199)
Q Consensus 91 gr-~l~v 96 (199)
|+ +|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 88 8876
No 73
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=133.48 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=76.2
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEE--EEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCC----cee
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKN--VQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEF----PFM 86 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~--v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~----~~~ 86 (199)
....++|||||||+.+|+++|+++|++||.|.. |++++| .+|.+ +|||||+|.+. +|..|+..|||. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~--rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN--RGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSB--CSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCc--ceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 345689999999999999999999999999977 999999 69998 99999999999 999999999999 888
Q ss_pred ccCCCcceEEEecccc
Q 029074 87 MSGMPRPVRARAAEVE 102 (199)
Q Consensus 87 ~~g~gr~l~v~~a~~e 102 (199)
||+|+|.++.+.
T Consensus 97 ----gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 ----GKTINVEFAKGS 108 (131)
T ss_dssp ----GCCCCCEECCCS
T ss_pred ----CEEEEEEECCCC
Confidence 999999999864
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-19 Score=124.28 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=72.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKC--KGYGFVDFDSPSAAQKAVTALKASGVQ----AQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSC--CSEEEEEESCHHHHHHHHHHHHHHTCC----EESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCc--CcEEEEEECCHHHHHHHHHHhcCCeEe----eEEE
Confidence 4689999999999999999999999999999999999 78887 999999999999999999999999998 8888
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
++.++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 77654
No 75
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=127.11 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=74.1
Q ss_pred ccCCCEEEecCCCCCC------CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 14 EKVKRTVYLDNLSPQV------TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~v------te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
....++|||||||+.+ |+++|+.+|++||.|.+|.++ ..+|.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~--~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKT--KGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBS--CCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCe--eeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 3446899999999999 789999999999999999988 568887 999999999999999999999999999
Q ss_pred cCCCc-ceEEEeccc
Q 029074 88 SGMPR-PVRARAAEV 101 (199)
Q Consensus 88 ~g~gr-~l~v~~a~~ 101 (199)
|+ +|+|.+|..
T Consensus 88 ---g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 ---KQHTFRVNLFTD 99 (105)
T ss_dssp ---TTCEEEEECSCC
T ss_pred ---CCceEEEEEcch
Confidence 98 999998863
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=125.15 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCc-eEEEEEe-eC-CCCCCCCceEEEEEecCHHHHHHHHHHhC--CCceeccCC
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGN-VKNVQFI-PN-YTEFRNIPHCALVEMENLKQAKDVVTSLH--EFPFMMSGM 90 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~-V~~v~v~-~d-~tg~s~~~G~afVef~~~~~A~~Ai~~ln--g~~~~~~g~ 90 (199)
..++|||+|||+.+++++|+++|++||. |.+|.++ .+ .+|.+ +|||||+|.+.++|..|+..|| +..+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~~g~~~~~---- 80 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKN--RGFAFVEYESHRAAAMARRKLMPGRIQLW---- 80 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTT--CCEEEEEESSHHHHHHHHTTTTTCCSCBT----
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCc--CcEEEEEecCHHHHHHHHHHhhCCCceec----
Confidence 4678999999999999999999999998 9999998 66 77887 9999999999999999999996 58888
Q ss_pred CcceEEEeccccc
Q 029074 91 PRPVRARAAEVEM 103 (199)
Q Consensus 91 gr~l~v~~a~~e~ 103 (199)
|++|+|.+|.+..
T Consensus 81 g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 GHQIAVDWAEPEI 93 (109)
T ss_dssp TBCCEEEESCSSC
T ss_pred CCeEEEEEcCCCC
Confidence 9999999998754
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=9.1e-19 Score=130.99 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=76.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~--~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS--RGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCC--CCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 34578999999999999999999999999999999999 78887 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++.+
T Consensus 118 l~V~~a~~ 125 (129)
T 2kxn_B 118 IRVDFSIT 125 (129)
T ss_dssp CEESCCSS
T ss_pred EEEEEecC
Confidence 99999875
No 78
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=123.55 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=72.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+++|++||.| +++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKS--KGYAFIEFASFEDAKEALNSCNKREIE----GRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCB--CSEEEEECSSHHHHHHHHHHTSSEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCE--eeEEEEEECCHHHHHHHHHHhCCCEeC----CeEE
Confidence 457899999999999999999999999987 5666678887 999999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 84 ~v~~a~~~ 91 (101)
T 2fc9_A 84 RLELQGPR 91 (101)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99999874
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=123.49 Aligned_cols=85 Identities=14% Similarity=0.278 Sum_probs=76.8
Q ss_pred HHHHhhhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 7 AEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 7 ~~~~~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
++...-.....++|||+|||+.+++++|+.+|++||.|.+|.++.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 15 ~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 15 EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp HHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3344445667889999999999999999999999999999999875 799999999999999999999999999
Q ss_pred ccCCCcceEEEecccc
Q 029074 87 MSGMPRPVRARAAEVE 102 (199)
Q Consensus 87 ~~g~gr~l~v~~a~~e 102 (199)
|++|+|.++++.
T Consensus 88 ----g~~l~v~~a~~~ 99 (109)
T 1x4g_A 88 ----GHVVKCYWGKES 99 (109)
T ss_dssp ----TEECEEECCCCC
T ss_pred ----CcEEEEEecCCC
Confidence 999999999864
No 80
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=8e-19 Score=122.85 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.+..||||||++.+|+++|+++|.+||+|.++++.. + +|||||+|.+.++|..|++.|||..+. ||+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~--kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----N--QGIALCKYTTREEANKAQMALNNCVLA----NTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----T--TTEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----C--CcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEE
Confidence 356799999999999999999999999999999875 3 999999999999999999999999999 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|+.|.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99885
No 81
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=6.1e-19 Score=125.84 Aligned_cols=80 Identities=24% Similarity=0.274 Sum_probs=72.5
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCC--CCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNY--TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~--tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
....++|||||||+.+++++|+++|++|| |.+|.++.+. +|++ +|||||+|.+.++|..|+ .|||..+. |
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~--~g~afV~f~~~~~a~~Ai-~l~g~~~~----g 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERL--KGFGYAEFEDLDSLLSAL-SLNEESLG----N 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCC--CSCEEEEECCHHHHHHHH-HTTTCCBT----T
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCcc--CeEEEEEECCHHHHHHHH-hcCCCEEC----C
Confidence 34568999999999999999999999999 9999999984 8887 999999999999999999 89999999 9
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
+.|+|.++.+
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9999999875
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=1.5e-18 Score=133.04 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=76.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+++|++||.|.+|.++.| .+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 143 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKES--RGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELR 143 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTS--CCEEEEEESBHHHHHHHHHHSTTEESS----SSEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 578999999999999999999999999999999999 78998 999999999999999999999999998 99999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++.+.
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999763
No 83
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=122.82 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC--CCceeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH--EFPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln--g~~~~~~g~gr 92 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++++ +|||||+|.+.++|..|+..|+ +..+. |+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr 81 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-------KNQAFLELATEEAAITMVNYYSAVTPHLR----NQ 81 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCEET----TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceEC----Cc
Confidence 45689999999999999999999999999999998864 8999999999999999999875 55677 99
Q ss_pred ceEEEeccccc
Q 029074 93 PVRARAAEVEM 103 (199)
Q Consensus 93 ~l~v~~a~~e~ 103 (199)
+|+|.++++..
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99999998643
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=126.14 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.7
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.....++|||+|||+.+++++|+.+|++||.|.+|.++.+..+ + +|||||+|.+.++|..|+..|||..+. |+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~--kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-S--KGFGFVTFENSADADRAREKLHGTVVE----GR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-C--TTEEEEECCCSHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-C--ceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3455789999999999999999999999999999999988443 5 999999999999999999999999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999763
No 85
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=5.1e-19 Score=124.43 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=73.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+++|++||.|..+.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMP--TGEAMVAFESRDEATAAVIDLNDRPIG----SRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCE--eeEEEEEECCHHHHHHHHHHhCCCeEC----CcEE
Confidence 3589999999999999999999999999998888887 88887 999999999999999999999999999 9999
Q ss_pred EEEecc
Q 029074 95 RARAAE 100 (199)
Q Consensus 95 ~v~~a~ 100 (199)
+|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999875
No 86
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=122.93 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=73.8
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+++++|+++|++||.|..|.+..+ +.+ +|||||+|.+.++|..|++.|||..+. |++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 90 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGG--PPFAFVEFEDPRDAEDAVYGRDGYDYD----GYR 90 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSS--SCCEEEEESCHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCC--CcEEEEEECCHHHHHHHHHHcCCCEEC----CeE
Confidence 445689999999999999999999999999999999654 445 899999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++++.
T Consensus 91 l~V~~a~~~ 99 (109)
T 1x4a_A 91 LRVEFPRSG 99 (109)
T ss_dssp CEEECCCCC
T ss_pred EEEEEcccC
Confidence 999999864
No 87
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=126.22 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=72.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++. + +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 76 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----G--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPL 76 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----S--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----C--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEE
Confidence 3457899999999999999999999999999998874 3 899999999999999999999999999 9999
Q ss_pred EEEecccccCC
Q 029074 95 RARAAEVEMFD 105 (199)
Q Consensus 95 ~v~~a~~e~~~ 105 (199)
+|.+|....+.
T Consensus 77 ~V~~a~~~~~~ 87 (111)
T 1whx_A 77 YLEWAPIGVFG 87 (111)
T ss_dssp EEEEEETTTTC
T ss_pred EEEECCCCccC
Confidence 99999865543
No 88
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=122.92 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=74.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEE-EEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKN-VQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~-v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+|+++|+++|++||.|.+ |.++.+.+|++ +|||||+|.+.++|..|+.. ||..+. +|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~--~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRS--TGEAFVQFASQEIAEKALKK-HKERIG----HRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCB--CSEEEEEESSHHHHHHHHTT-TTCCSS----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCc--ceEEEEEECCHHHHHHHHHh-CcchhC----CcE
Confidence 34678999999999999999999999999987 88888888998 99999999999999999997 999988 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|..+.+.
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999988754
No 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6e-19 Score=124.88 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=75.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|..+.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMP--TGEAMVAFESRDEATAAVIDLNDRPIG----SRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCE--EEEEEEEESCHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCe--eeEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 34578999999999999999999999999998888887 88887 999999999999999999999999999 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++..
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99999864
No 90
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2.6e-18 Score=126.66 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=75.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+ .|||..|. |++|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHP--KGYAYIEFAERNSVDAAV-AMDETVFR----GRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSC--EEEEEEEESSHHHHHHHH-TTTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc--ccEEEEEECCHHHHHHHH-hcCCCeEC----CeEE
Confidence 3589999999999999999999999999999999999 78988 999999999999999999 79999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++++
T Consensus 108 ~V~~a~~ 114 (124)
T 2jwn_A 108 KVLPKRT 114 (124)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999875
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=120.40 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=75.7
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+++++|+++|++| .|.+|+++.+.+|.+ +|||||+|.+.++|..|+. |||..+. |++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~--~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~ 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNK--TGYIFVDFSNEEEVKQALK-CNREYMG----GRY 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCE--EEEEEEECSSHHHHHHHHH-SCSEEET----TEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCC--ceEEEEEECCHHHHHHHHH-hCCceeC----CcE
Confidence 3456899999999999999999999999 999999999988887 9999999999999999999 9999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 999998753
No 92
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.6e-18 Score=130.96 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+.+|++||.|.+|.++.+ .++.+ +|||||+|.+.++|..||..|||..|. +++|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 111 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTA--CGFCFVEYYSRADAENAMRYINGTRLD----DRII 111 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHTTTSEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 4689999999999999999999999999999999999 78887 999999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+|.+.
T Consensus 112 ~V~~a~~~ 119 (156)
T 1h2v_Z 112 RTDWDAGF 119 (156)
T ss_dssp EEEEESCC
T ss_pred EEEECCCC
Confidence 99999863
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=122.42 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=71.9
Q ss_pred CCEEEecCCCCCCCHHHHH----HHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 17 KRTVYLDNLSPQVTEPVIR----TALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~----~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.++|||+|||+.+++++|+ .+|++||.|.+|.++.+..+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~----rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr 80 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY----QLKAVVQMENLQDAIGAVNSLHRYKIG----SK 80 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST----TCCEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC----CeEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 4689999999999999999 99999999999999987332 589999999999999999999999999 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.+|++.
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999999763
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.7e-18 Score=124.57 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=72.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..+ |..+. |++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~--kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~~ 95 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS--RGFGFVTFMDQAGVDKVLAQS-RHELD----SKT 95 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCC--TTCEEEEESSHHHHHHHHHSS-CEEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCc--CcEEEEEECCHHHHHHHHHHC-CCcCC----CEE
Confidence 34689999999999999999999999999999999999 78988 999999999999999999976 47788 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++.+
T Consensus 96 l~V~~a~~ 103 (109)
T 2rs2_A 96 IDPKVAFP 103 (109)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=128.88 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=74.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+++++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKH--RGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCC--CSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCc--CcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 45689999999999999999999999999999999999 88887 999999999999999999999999999 999
Q ss_pred eEEEec
Q 029074 94 VRARAA 99 (199)
Q Consensus 94 l~v~~a 99 (199)
|+|.+|
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-18 Score=117.60 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=70.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccC----CcEE
Confidence 346899999999999999999999999999999986 789999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 73 ~v~~a~~~ 80 (90)
T 2dnq_A 73 NVEASKNK 80 (90)
T ss_dssp EEECSSCC
T ss_pred EEEECCCC
Confidence 99999764
No 97
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=126.49 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=70.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC--CceeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHE--FPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng--~~~~~~g~gr 92 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|+..|++ ..+. |+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr 97 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-------KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQ 97 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-------GTEEEEECSCHHHHHHHHHHHHHHCCCBT----TB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhccCCceEC----Ce
Confidence 34678999999999999999999999999999999875 89999999999999999999885 5677 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.+|++.
T Consensus 98 ~l~V~~a~~k 107 (119)
T 2ad9_A 98 PIYIQFSNHK 107 (119)
T ss_dssp CCEEEECSSS
T ss_pred EEEEEEccCC
Confidence 9999999764
No 98
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=118.78 Aligned_cols=75 Identities=20% Similarity=0.400 Sum_probs=70.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++ ++||||+|.+.++|..|+..|||..+. |++|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 74 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEFQ----GKRM 74 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCeeC----CcEE
Confidence 456889999999999999999999999999999985 679999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 75 ~V~~a~~~ 82 (92)
T 2dgt_A 75 HVQLSTSR 82 (92)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99999764
No 99
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=128.35 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=71.4
Q ss_pred cCCCEEEecCCCCCCCHHHHH----HHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIR----TALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~----~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
...++|||||||+.+++++|+ .+|++||.|.+|.+.. +|++ +|||||+|.+.++|..|+..|||..+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~--rG~aFV~F~~~~~A~~Ai~~lng~~l~---- 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDN--SGKAYIVFATQESAQAFVEAFQGYPFQ---- 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSS--CCCEEEEESSHHHHHHHHHHSTTCCCT----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCc--CCEEEEEECCHHHHHHHHHHHCCCEeC----
Confidence 345789999999999999876 6999999999987753 6777 999999999999999999999999999
Q ss_pred CcceEEEeccc
Q 029074 91 PRPVRARAAEV 101 (199)
Q Consensus 91 gr~l~v~~a~~ 101 (199)
|++|+|.+|++
T Consensus 99 gr~l~V~~a~~ 109 (127)
T 2a3j_A 99 GNPLVITFSET 109 (127)
T ss_dssp TSCCEEEECCC
T ss_pred CCEEEEEEccC
Confidence 99999999975
No 100
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=122.32 Aligned_cols=76 Identities=25% Similarity=0.328 Sum_probs=71.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
++|||+|||+.+|+++|+++|++||.|.+|.++.+ + +|||||+|.+.++|..|+..|||..+. |++|+|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----P--PGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----S--SSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----C--CCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEE
Confidence 48999999999999999999999999999999876 4 899999999999999999999999999 9999999
Q ss_pred eccccc
Q 029074 98 AAEVEM 103 (199)
Q Consensus 98 ~a~~e~ 103 (199)
++.+..
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 998754
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=122.40 Aligned_cols=81 Identities=15% Similarity=0.035 Sum_probs=73.7
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
....++|||+|||+.+|+++|+++|++||.+ +|+++.|.+|++ +|||||+|.+.++|+.||. +|+..+. +|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~--~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRV--TGEADVEFATHEDAVAAMA-KDKANMQ----HRY 83 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCE--EEEEEEECSSSHHHHHHHT-TSSCCSS----SSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCE--eeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 3456899999999999999999999999955 999999988988 9999999999999999995 7999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|..+.+.
T Consensus 84 i~V~~~~~~ 92 (102)
T 1wez_A 84 VELFLNSTA 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999988753
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-19 Score=127.32 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=71.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+.+|++||.|..+.+..+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 97 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM--RGQAFITFPNKEIAWQALHLVNGYKLY----GKIL 97 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS--CSEEEEECSSHHHHHHHHHHSTTCBCS----SCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc--ceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3579999999999999999999999999954433333 37887 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 98 ~v~~a~~~ 105 (115)
T 2cpx_A 98 VIEFGKNK 105 (115)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999864
No 103
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=122.96 Aligned_cols=77 Identities=29% Similarity=0.376 Sum_probs=69.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc--eeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP--FMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~--~~~~g~gr 92 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++++ +|||||+|.+.++|..|+..|++.. +. |+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr 81 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-------KRQALVEFENIDSAKECVTFAADVPVYIA----GQ 81 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-------TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-------CCEEEEEECCHHHHHHHHHHhccCCceEC----CE
Confidence 34689999999999999999999999999999998863 8999999999999999999987664 66 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|.++.+.
T Consensus 82 ~l~V~~a~~~ 91 (104)
T 1wex_A 82 QAFFNYSTSK 91 (104)
T ss_dssp BCEEEECSSS
T ss_pred EEEEEEccCc
Confidence 9999999764
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.6e-18 Score=132.35 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|..|.++.+ .+|.+ +|||||+|.+.++|..||..|||..|. |++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFS--KGYALVEYETHKQALAAKEALNGAEIM----GQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcE--eeEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 34567999999999999999999999999999999999 88987 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 144 l~V~~a~~~ 152 (165)
T 1rk8_A 144 IQVDWCFVK 152 (165)
T ss_dssp CEEEESEEC
T ss_pred EEEEEecCC
Confidence 999999753
No 105
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=119.99 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=71.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-------kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-------KGFGFIRLETRTLAEIAKVELDNMPLR----GKQL 81 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-------TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-------CCEEEEEECCHHHHHHHHHHhCCCEeC----CceE
Confidence 34579999999999999999999999999999999854 899999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 99999763
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=127.31 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=75.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCce-EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNV-KNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V-~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+|+++|+++|++||.| .+|+++.|.+|.+ +|||||+|.+.++|..|+.. ||..|. |++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~--~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQG--LGQALVQFKNEDDARKSERL-HRKKLN----GRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSC--SSCEEEECSSHHHHHHHGGG-CSEEET----TEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCc--ceEEEEEECCHHHHHHHHHh-CCCccC----CeE
Confidence 446899999999999999999999999999 8999999988988 99999999999999999987 999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999764
No 107
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=9.1e-19 Score=117.94 Aligned_cols=74 Identities=18% Similarity=0.312 Sum_probs=69.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
+|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+.. +|..+. |++|+|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR--RGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSS--CCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCc--CCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEE
Confidence 6999999999999999999999999999999998 77887 99999999999999999985 888888 9999998
Q ss_pred ec
Q 029074 98 AA 99 (199)
Q Consensus 98 ~a 99 (199)
+|
T Consensus 74 ~a 75 (75)
T 1iqt_A 74 VA 75 (75)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=117.20 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=70.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHh-CCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSL-HEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~l-ng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++++ +|||||+|.+.++|..|+..| +|..+. |++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-------kg~afV~f~~~~~A~~a~~~l~~~~~~~----g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-------QQCAFIQFATRQAAEVAAEKSFNKLIVN----GRR 78 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHTTTTTCEET----TEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-------CCEEEEEECCHHHHHHHHHHhcCCeeEC----CCE
Confidence 45689999999999999999999999999999999864 899999999999999999999 999998 999
Q ss_pred eEEEecc
Q 029074 94 VRARAAE 100 (199)
Q Consensus 94 l~v~~a~ 100 (199)
|+|.+|+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999874
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2.2e-18 Score=129.74 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=76.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~--~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l 119 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKES--RGFAFVRFHDKRDAEDAMDAMDGAVLD----GREL 119 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSC--CSCCEEECSCHHHHHHHHTTTTTCCSS----SSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 3578999999999999999999999999999999998 78887 999999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++++
T Consensus 120 ~V~~a~~ 126 (135)
T 2lea_A 120 RVQMARY 126 (135)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999976
No 110
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=119.86 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCc-eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCC-CceeccCCCcc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGN-VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHE-FPFMMSGMPRP 93 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~-V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng-~~~~~~g~gr~ 93 (199)
..++|||+|||+.+++++|+.+|++||. |..+.+. + +|||||+|.+.++|..|+..||| ..+. |++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~--~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------K--SGYAFVDYPDQNWAIRAIETLSGKVELH----GKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------E--TTEEEECCSCHHHHHHHHHHHTTTCEET----TEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------C--CCEEEEEECCHHHHHHHHHHccCCeeEC----CEE
Confidence 4689999999999999999999999999 6655553 2 89999999999999999999999 8898 999
Q ss_pred eEEEeccccc
Q 029074 94 VRARAAEVEM 103 (199)
Q Consensus 94 l~v~~a~~e~ 103 (199)
|+|.++.+..
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998753
No 111
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.9e-18 Score=140.02 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC--ceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFG--NVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG--~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
..++|||+|||+.+|+++|+.+|++|| .|.+|+|++| .+|++ +|||||+|.+.++|..||..|||..|. |+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~s--kGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQS--KGFALVGVGSEASSKKLMDLLPKRELH----GQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCE--EEEEEEEESCTTHHHHHHTTSTTSCBT----TB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCcc--ceEEEEEECCHHHHHHHHHHcCCCeEC----CE
Confidence 457899999999999999999999999 9999999999 79998 999999999999999999999999999 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.+|.+
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999999865
No 112
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=7.9e-18 Score=122.52 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=73.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ +.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 77 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PET--RGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYL 77 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTT--TTCEEEEESSHHHHHHHHHHHTTCBSS----SCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCC--CcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 45689999999999999999999999999999999875 454 899999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 78 ~v~~a~~ 84 (115)
T 3lqv_A 78 VVLYYNA 84 (115)
T ss_dssp EEEECCH
T ss_pred EEEEecC
Confidence 9999875
No 113
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-18 Score=125.24 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=68.4
Q ss_pred cCCCEEEecCCCCC-CCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC--ceeccCCC
Q 029074 15 KVKRTVYLDNLSPQ-VTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF--PFMMSGMP 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~-vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~--~~~~~g~g 91 (199)
...++|||+|||+. +++++|+.+|++||.|.+|.+++ + +|||||+|.+.++|..|++.|++. .+. |
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----G 91 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----M--KSQAFIEMETREDAMAMVDHCLKKALWFQ----G 91 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----T--TTEEEEECSSHHHHHHHHHHHHHSCCCSS----S
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----C--CCEEEEEECCHHHHHHHHHHhccCCceEC----C
Confidence 44679999999998 99999999999999999999975 3 899999999999999999988654 477 9
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
|+|+|.+|..
T Consensus 92 r~l~V~~a~~ 101 (112)
T 1x4f_A 92 RCVKVDLSEK 101 (112)
T ss_dssp SCCEEEEECS
T ss_pred EEEEEEECcc
Confidence 9999999975
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=117.75 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC--CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQF--GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~f--G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
..++|||+|||+.+++++|+.+|++| |.|.+|.++ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---------RDYAFVHFSNREDAVEAMKALNGKVLD----GSP 80 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHSSEEET----TEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---------CCeEEEEeCCHHHHHHHHHHhCCCEeC----CcE
Confidence 45799999999999999999999999 999998873 899999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++++.
T Consensus 81 l~v~~a~~~ 89 (99)
T 2cpd_A 81 IEVTLAKPV 89 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999864
No 115
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=116.77 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=70.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVK----GKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEE
Confidence 456889999999999999999999999999999986 679999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999864
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.3e-18 Score=120.72 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=70.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||||||+.+++++|+.+|++||.|.+|+++. + +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----E--KGCCFIKYDTHEQAAVCIVALANFPFQ----GRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----T--TTEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----C--CCEEEEEECCHHHHHHHHHHhCCCeEC----CeEE
Confidence 4467999999999999999999999999999999873 3 899999999999999999999999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++++
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9998865
No 117
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.5e-17 Score=125.46 Aligned_cols=81 Identities=14% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
++++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l 74 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS--LGYGFVNYIDPKDAEKAINTLNGLRLQ----TKTI 74 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcc--eeEEEEEECCHHHHHHHHHHcCCCccC----CceE
Confidence 3689999999999999999999999999999999999 68987 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 75 ~v~~~~~~ 82 (167)
T 1fxl_A 75 KVSYARPS 82 (167)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 118
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=2.9e-18 Score=121.00 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=73.1
Q ss_pred ccCCCEEEecCCCCCCCHHHHH----HHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIR----TALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~----~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
....++|||+|||+.+++++|+ .+|++||.|.+|.++. +|.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~--- 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKM--RGQAFVIFKEVSSATNALRSMQGFPFY--- 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHH--TTCEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCc--CcEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 3457899999999999999999 9999999999998874 5666 899999999999999999999999998
Q ss_pred CCcceEEEeccc
Q 029074 90 MPRPVRARAAEV 101 (199)
Q Consensus 90 ~gr~l~v~~a~~ 101 (199)
|++|+|.++.+
T Consensus 78 -g~~l~v~~a~~ 88 (97)
T 1nu4_A 78 -DKPMRIQYAKT 88 (97)
T ss_dssp -TEECEEEECSS
T ss_pred -CcEEEEEEccC
Confidence 99999999976
No 119
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=118.12 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=72.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++|+ .|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSS--KGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSE--EEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCc--CcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 4568899999999999999999999885 5777888 78887 999999999999999999999999999 999
Q ss_pred eEEEeccccc
Q 029074 94 VRARAAEVEM 103 (199)
Q Consensus 94 l~v~~a~~e~ 103 (199)
|+|.++++..
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998743
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=3.1e-18 Score=129.46 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=74.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCc---eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGN---VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~---V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
...++|||+|||+.+|+++|+++|++||. |.+|+++.|..|++ +|||||+|.+.++|..|+. +||..+. |
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~s--rG~aFV~F~~~e~a~~Al~-~~g~~l~----g 114 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQ--SGEAFVELGSEDDVKMALK-KDRESMG----H 114 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCE--EEEEEEECSSHHHHHHHHT-TTEEESS----S
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCC--CeEEEEEECCHHHHHHHHh-cCCCEEC----C
Confidence 34578999999999999999999999999 89999999966988 9999999999999999999 9999998 9
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
|+|+|..+.+
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999998865
No 121
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=3.9e-18 Score=125.47 Aligned_cols=81 Identities=17% Similarity=0.075 Sum_probs=75.0
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCc---eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGN---VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~---V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
...++|||+|||+.+|+++|+++|++||. |..|+++.+..|++ +|||||+|.+.++|..|+. +||..+. |
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~--~G~afV~F~~~~~a~~Al~-~~g~~~~----g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQ--SGEAFVELESEDDVKLALK-KDRESMG----H 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCE--EEEEEEEBSSHHHHHHHGG-GTTEEET----T
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCC--CeEEEEEECCHHHHHHHHh-cCCCeEC----C
Confidence 44688999999999999999999999999 89999999966887 9999999999999999999 9999998 9
Q ss_pred cceEEEecccc
Q 029074 92 RPVRARAAEVE 102 (199)
Q Consensus 92 r~l~v~~a~~e 102 (199)
|+|+|.++.+.
T Consensus 88 r~i~V~~a~~~ 98 (118)
T 2db1_A 88 RYIEVFKSHRT 98 (118)
T ss_dssp EEEEEEEECHH
T ss_pred eEEEEEECCHH
Confidence 99999998654
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.2e-18 Score=122.07 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=73.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+. +|..+. |++|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVS--KGYGFVSFYNDVDVQKIVE--SQINFH----GKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE--EEEEEEEESSCCCHHHHTT--CCCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCc--cceEEEEECCHHHHHHHHh--CCCeEC----CEEEE
Confidence 457899999999999999999999999999999999988887 9999999999999999998 898888 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++.+
T Consensus 80 v~~a~~ 85 (102)
T 2xs2_A 80 LGPAIR 85 (102)
T ss_dssp EEEEEE
T ss_pred EEECCc
Confidence 998865
No 123
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=1.5e-17 Score=119.02 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=70.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+|+++|+++|++||.|..|.++ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 76 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDLE----GENIE 76 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCccC----CCEEE
Confidence 35789999999999999999999999999999885 789999999999999999999999999 99999
Q ss_pred EEeccccc
Q 029074 96 ARAAEVEM 103 (199)
Q Consensus 96 v~~a~~e~ 103 (199)
|.++.+..
T Consensus 77 v~~a~~~~ 84 (103)
T 2dgu_A 77 IVFAKPPD 84 (103)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCc
Confidence 99998643
No 124
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-18 Score=128.28 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+.+|++||.|..+.++.+ .+|.+ +|||||+|.+.++|..||. |||..|. |++|
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~--~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~i 96 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA--TGEGFVEFRNEADYKAALC-RHKQYMG----NRFI 96 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSE--EEEEEEEBSSSHHHHHHHT-SCSBCST----TSCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCC--CeEEEEEECCHHHHHHHHH-hCCCeEC----CcEE
Confidence 4579999999999999999999999999988555555 88998 9999999999999999999 9999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.+|.+
T Consensus 97 ~V~~a~~ 103 (124)
T 1wel_A 97 QVHPITK 103 (124)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998864
No 125
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-17 Score=124.93 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=81.1
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
|+|||+|||+.+|+++|+++|++||.|.+|.++.+.+|++ +|||||+|.+.++|..|+..|||..+. |++++|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~ 74 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN--VNYAFVEYHQSHDANIALQTLNGKQIE----NNIVKIN 74 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CC--EEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCC--CCEEEEEeCCHHHHHHHHHHcCCCccC----CCeeEEE
Confidence 7899999999999999999999999999999999977887 999999999999999999999999999 9999999
Q ss_pred ecccccCCCCCCCCCCcccccccCC
Q 029074 98 AAEVEMFDDHPAKPGQRIQFQWLDP 122 (199)
Q Consensus 98 ~a~~e~~~~~p~~p~~~~~~r~~~~ 122 (199)
++.+... .+..+...+.+...++
T Consensus 75 ~~~~~~~--~~~~~~~~l~v~nl~~ 97 (166)
T 3md3_A 75 WAFQSQQ--SSSDDTFNLFVGDLNV 97 (166)
T ss_dssp ECCCCCC--CCCTTCEEEEEESCCT
T ss_pred EcCCCCC--CCCCCCceEEECCCCC
Confidence 9875432 2223344444444443
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.2e-18 Score=118.82 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.....++|||+|||+.+++++|+.+|++||.|. +.++. +.+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 84 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGP--RRRAFLHYPDSAAAQQAVSCLQGLRLG----TD 84 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETT--TTEEEEECSSHHHHHHHHHHHTTCCSS----SS
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCC--CcEEEEEECCHHHHHHHHHHhCCCEEC----Cc
Confidence 345578999999999999999999999999996 66664 355 899999999999999999999999999 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.++.+
T Consensus 85 ~l~V~~a~~ 93 (97)
T 2e5j_A 85 TLRVALARQ 93 (97)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999975
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.6e-17 Score=120.41 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=71.2
Q ss_pred hhhccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 11 AFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 11 ~f~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
.-.+...++|||||||+.+++++|+.+|++||.|.+|.++ +|||||+|.+.++|..|+..|||..+.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~---- 91 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFA---- 91 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEET----
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEEC----
Confidence 3445677999999999999999999999999999999986 689999999999999999999999998
Q ss_pred CcceEEEeccc
Q 029074 91 PRPVRARAAEV 101 (199)
Q Consensus 91 gr~l~v~~a~~ 101 (199)
|++|+|.++.+
T Consensus 92 g~~l~V~~a~~ 102 (108)
T 2jvo_A 92 NQPLEVVYSKL 102 (108)
T ss_dssp TEECEEESCSC
T ss_pred CeEEEEEEecC
Confidence 99999999875
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-19 Score=124.67 Aligned_cols=78 Identities=10% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.. .++.+ .+|.+ +|||||+|.+.++|..|++ |||..+. |++|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~--~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l 87 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTN--RKFGYVDFESAEDLEKALE-LTGLKVF----GNEI 87 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETT--TTEEEEEESSHHHHHHHHH-GGGCCBT----TBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCc--CcEEEEEECCHHHHHHHHh-cCCcEEC----CcEE
Confidence 4679999999999999999999999999888 66666 78887 9999999999999999998 9999999 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 88 ~V~~a~~ 94 (101)
T 1fj7_A 88 KLEKPKG 94 (101)
T ss_dssp EEECCSC
T ss_pred EEEEcCC
Confidence 9999875
No 129
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=123.45 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=74.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCc---eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGN---VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~---V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
....+|||+|||+.+|+++|+.+|++||. |.+|+++.+..|++ +|||||+|.+.++|..|+. +||..+. |
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~--~G~afV~F~~~~~a~~Al~-~~~~~~~----g 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKR--RGDALIEMESEQDVQKALE-KHRMYMG----Q 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTT--CSEEEEEBSSHHHHHHHHT-TTTCCSS----S
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCE--eeEEEEEECCHHHHHHHHH-hCcceeC----C
Confidence 45678999999999999999999999998 89999999955888 9999999999999999999 9999888 9
Q ss_pred cceEEEecccc
Q 029074 92 RPVRARAAEVE 102 (199)
Q Consensus 92 r~l~v~~a~~e 102 (199)
|.|+|.++.+.
T Consensus 82 r~i~V~~a~~~ 92 (107)
T 2lmi_A 82 RYVEVYEINNE 92 (107)
T ss_dssp SCCCCEECCHH
T ss_pred eEEEEEECCHH
Confidence 99999988753
No 130
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=3.3e-17 Score=125.28 Aligned_cols=81 Identities=10% Similarity=0.220 Sum_probs=76.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|+|..+. |++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~--~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS--YGYAFVDFTSEMDSQRAIKVLNGITVR----NKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEE--CSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCcc--ceEEEEEECCHHHHHHHHHhcCCCEeC----CcEE
Confidence 4689999999999999999999999999999999998 78887 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 76 ~v~~~~~~ 83 (168)
T 1b7f_A 76 KVSYARPG 83 (168)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99999764
No 131
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.4e-17 Score=131.03 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
.++|||+|||+.+++++|+++|++||.|..|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++|+|
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~--kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~V 161 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRS--LGTADVHFERRADALKAMKQYKGVPLD----GRPMDI 161 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSC--SCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCE--eeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 57899999999999999999999999999999999888887 999999999999999999999999999 999999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
.+|.+..
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9997654
No 132
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2.6e-17 Score=116.87 Aligned_cols=75 Identities=9% Similarity=0.255 Sum_probs=69.9
Q ss_pred ccCCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||||||+ .+++++|+.+|++||.|.+|.+. +|||||+|.+.++|..|+..|||..+. |+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXESQEMNF----GK 85 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTSEET----TE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 34568999999998 99999999999999999999883 899999999999999999999999999 99
Q ss_pred ceEEEeccc
Q 029074 93 PVRARAAEV 101 (199)
Q Consensus 93 ~l~v~~a~~ 101 (199)
+|+|.++++
T Consensus 86 ~l~V~~a~~ 94 (97)
T 2xnq_A 86 KLILEVSSS 94 (97)
T ss_dssp ECEEEECCC
T ss_pred EEEEEecCC
Confidence 999999875
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.5e-17 Score=126.70 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=72.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||||||+.+|+++|+.+|++||.|.+|+++.+ + +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 140 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----P--PGFAFVEFEDPRDAADAVRELDGRTLC----GCRV 140 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----S--CSEEEEEESSHHHHHHHHHHHSSSCSS----SSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----C--CcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 34589999999999999999999999999999999876 4 899999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 141 ~v~~a~~ 147 (150)
T 2i2y_A 141 RVELSNG 147 (150)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999875
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-17 Score=117.19 Aligned_cols=75 Identities=9% Similarity=0.236 Sum_probs=69.5
Q ss_pred cCCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+ .+++++|+.+|++||.|.+|.+. +|||||+|.+.++|..|+..|||..+. |++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMNF----GKK 74 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSCB----TTT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3467899999999 99999999999999999999984 899999999999999999999999999 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 75 l~V~~a~~~ 83 (96)
T 2kvi_A 75 LILEVSSSN 83 (96)
T ss_dssp BCEEEEECC
T ss_pred EEEEEcCcC
Confidence 999999753
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-17 Score=117.26 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=70.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC---
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP--- 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g--- 91 (199)
...++|||+|||+.+++++|+.+|++||.|..|.++.+ |||||+|.+.++|..||+.|||..|. |
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEG 80 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------TEEEEEESSHHHHHHHHHHSSSEEEE----CTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------CEEEEEECCHHHHHHHHHHHCcCCcc----CCcC
Confidence 34678999999999999999999999999999999753 89999999999999999999999999 8
Q ss_pred --cceEEEecccc
Q 029074 92 --RPVRARAAEVE 102 (199)
Q Consensus 92 --r~l~v~~a~~e 102 (199)
++|+|.+|.+.
T Consensus 81 ~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 81 ETAYIRVKVDGPR 93 (108)
T ss_dssp CEEEEEEEESSCC
T ss_pred cceEEEEEeCCCC
Confidence 99999999863
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.1e-17 Score=132.66 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=75.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..+||||||||+.+|+++|+++|++||.|.+|++++| .+|++ +|||||+|.+.++|..|+..+||..+. |+++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~--~G~afV~F~~~~~A~~Ai~~~~~~~~~----g~~i 87 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS--LGYAYVNFQQPADAERALDTMNFDVIK----GKPV 87 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCc--cccccceeCCHHHHHHHHHHhhhhhcC----Cccc
Confidence 4589999999999999999999999999999999999 88998 999999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
++.++.+
T Consensus 88 ~~~~~~~ 94 (213)
T 4f02_A 88 RIMWSQR 94 (213)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 9998864
No 137
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=116.06 Aligned_cols=77 Identities=19% Similarity=0.450 Sum_probs=69.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..|||..+. +.+++|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~--~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-------DSFAYIQYESLDAAQAACAKMRGFPLG--GPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-------SCCEEEEESSHHHHHHHHHHHTTCBCS--SSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-------CCEEEEEECCHHHHHHHHHHHCCCEeC--CCCcEEE
Confidence 4578999999999999999999999999999998754 789999999999999999999998764 3479999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999976
No 138
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=121.26 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=71.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.+|||+|||+.+|+++|+++|++| .|.+|.|+.|..|++ +|||||+|.+.++|..|+ .+||..+. ||.|.|.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~--~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V~ 88 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRN--NGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEVS 88 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCC--CSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCC--CeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEEE
Confidence 589999999999999999999999 899999999967988 999999999999999999 69999988 9999999
Q ss_pred eccc
Q 029074 98 AAEV 101 (199)
Q Consensus 98 ~a~~ 101 (199)
.+.+
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8865
No 139
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.2e-17 Score=122.09 Aligned_cols=76 Identities=7% Similarity=0.039 Sum_probs=69.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..+|||+|||+.+++++|+++|++|| .|..+.+.. +.+ +|||||+|.+.++|+.||+.|||..+. |++|+
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~--rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~ 98 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDF--DGTGALEFPSEEILVEALERLNNIEFR----GSVIT 98 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSS--SCCEEEEESSHHHHHHHHHHTTTEEET----TEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 45899999999999999999999999 899988853 235 999999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 998863
No 140
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-19 Score=129.22 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=76.9
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEE--------EEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKN--------VQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~--------v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
...++|||+|||+.+++++|+.+|++||.|.. |.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL--KGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 44689999999999999999999999999998 899998 78887 99999999999999999999999999
Q ss_pred eccCCCcceEEEecccc
Q 029074 86 MMSGMPRPVRARAAEVE 102 (199)
Q Consensus 86 ~~~g~gr~l~v~~a~~e 102 (199)
. |++|+|.++.+.
T Consensus 83 ~----g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 S----GNPIKVSFATRR 95 (116)
Confidence 9 999999999764
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=3.4e-17 Score=118.47 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCEEEecCCCCC-CCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQ-VTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~-vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+. +++++|+.+|++||.|.+|.+ + +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 93 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------H--KGYAFVQYSNERHARAAVLGENGRVLA----GQTLD 93 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------E--TTEEEEECSSSHHHHHHHHHHTTCEET----TEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------e--CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 479999999999 999999999999999999988 2 899999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++.+
T Consensus 94 V~~a~~ 99 (110)
T 1wf1_A 94 INMAGE 99 (110)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999975
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=126.68 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEE------EeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQ------FIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~------v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
..++|||||||+.+|+++|+.+|++||.|..|. +....+|.+ +|||||+|.+.++|..|+..|||..+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~--~g~afV~f~~~~~A~~Ai~~lng~~~~--- 118 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRM--KGQAFIGLPNEKAAAKALKEANGYVLF--- 118 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTT--EEEEEEECSSHHHHHHHHHHHTTBEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCc--ccEEEEEeCCHHHHHHHHHHhCCCEeC---
Confidence 457899999999999999999999999987641 111257887 999999999999999999999999999
Q ss_pred CCcceEEEecccc
Q 029074 90 MPRPVRARAAEVE 102 (199)
Q Consensus 90 ~gr~l~v~~a~~e 102 (199)
|++|+|.+|++.
T Consensus 119 -g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 -GKPMVVQFARSA 130 (143)
T ss_dssp -TEECEEEECCCS
T ss_pred -CcEEEEEECCCC
Confidence 999999999764
No 143
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=6e-17 Score=124.42 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=74.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+|+++|+++|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. +|.+++|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~~~l~ 170 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS--RGCAFVTFTTRAMAQTAIKAMHQAQTM-EGCSSPMV 170 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE--EEEEEEEESSHHHHHHHHHHHTTSCCC-TTCSSCCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCE--EEEEEEEECCHHHHHHHHHHhcCCccc-CCCCCCeE
Confidence 457899999999999999999999999999999999977887 999999999999999999999999765 44569999
Q ss_pred EEec
Q 029074 96 ARAA 99 (199)
Q Consensus 96 v~~a 99 (199)
|.+|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 144
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=121.62 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=70.6
Q ss_pred cCCCEEEe--cCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCce-eccCCC
Q 029074 15 KVKRTVYL--DNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF-MMSGMP 91 (199)
Q Consensus 15 ~~~rtlfV--gnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~-~~~g~g 91 (199)
...++||| ||||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|+.|++.|||..+ ...+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 44678999 889999999999999999999999988642 89999999999999999999999987 444448
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
++|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 9999999863
No 145
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=123.94 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=73.9
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCce----EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceecc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNV----KNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMS 88 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V----~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~ 88 (199)
......+|||+|||+.+|+++|+++|++||.| .+|.|+.+.+|++ +|||||+|.+.++|..|+.. |+..+.
T Consensus 19 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~--~G~aFV~F~~~~~A~~Al~~-~~~~l~-- 93 (123)
T 2dha_A 19 SKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRP--TGDAFVLFACEEYAQNALRK-HKDLLG-- 93 (123)
T ss_dssp HCCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCE--EEEEEECCSSHHHHHHHHTT-TTEESS--
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCE--eeEEEEEECCHHHHHHHHHh-CCCeeC--
Confidence 34566899999999999999999999999975 6899999988998 99999999999999999986 998887
Q ss_pred CCCcceEEEeccc
Q 029074 89 GMPRPVRARAAEV 101 (199)
Q Consensus 89 g~gr~l~v~~a~~ 101 (199)
+|.|.|..+.+
T Consensus 94 --gR~i~V~~a~~ 104 (123)
T 2dha_A 94 --KRYIELFRSTA 104 (123)
T ss_dssp --SCEECCEEECH
T ss_pred --CeEEEEEECCH
Confidence 99999988765
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.2e-17 Score=123.14 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i 159 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS--RGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPL 159 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE--EEEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc--ceEEEEEeCCHHHHHHHHHHhCCCccC----CcEE
Confidence 3568999999999999999999999999999999999 88887 999999999999999999999999998 9999
Q ss_pred EEEecc
Q 029074 95 RARAAE 100 (199)
Q Consensus 95 ~v~~a~ 100 (199)
+|.+|+
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999986
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-18 Score=118.42 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=70.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+.+|++||.|..+ ..+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKS--KGIAYIEFKSEADAEKNLEEKQGAEID----GRSV 83 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEE--EEEEEEEESSHHHHHHHHHHTTEEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 346899999999999999999999999988766 446776 999999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++.+
T Consensus 84 ~v~~a~~ 90 (96)
T 1fjc_A 84 SLYYTGE 90 (96)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9999875
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1e-16 Score=127.37 Aligned_cols=82 Identities=17% Similarity=0.349 Sum_probs=77.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..|. |++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~--~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~ 196 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH--KGYGFIEYEKAQSSQDAVSSMNLFDLG----GQY 196 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCBCS----SSB
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc--CceEEEEecCHHHHHHHHHHccCCEeC----CcE
Confidence 45689999999999999999999999999999999999 78887 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 197 i~V~~a~~~ 205 (216)
T 2qfj_A 197 LRVGKAVTP 205 (216)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999764
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=4.5e-17 Score=113.33 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=70.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|||+.+++++|+++|++| .|.+|.+. ++ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 70 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RN--KRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDL 70 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GG--GTEEEECCSCHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CC--CcEEEEEECCHHHHHHHHHHhCCCeEC----CcEE
Confidence 356899999999999999999999999 99999884 34 999999999999999999999999999 9999
Q ss_pred EEEeccccc
Q 029074 95 RARAAEVEM 103 (199)
Q Consensus 95 ~v~~a~~e~ 103 (199)
+|.++....
T Consensus 71 ~V~~a~~~~ 79 (88)
T 1wg1_A 71 IVQLQPTDA 79 (88)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999987543
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=9.8e-18 Score=127.19 Aligned_cols=82 Identities=15% Similarity=0.016 Sum_probs=73.1
Q ss_pred hccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
.....++|||+|||+.+|+++|+++|++|| |.+|.|+.|.+|++ +|||||+|.+.++|..|| .+|+..+. +|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~s--rGfaFV~F~~~e~A~~Al-~~~g~~l~----gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRV--TGEADVEFATHEEAVAAM-SKDRANMQ----HR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCS--SCCCEEECSHHHHHHHHT-TCCSCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCC--ceEEEEEeCCHHHHHHHH-hhCCCEEC----CE
Confidence 344567999999999999999999999999 67999999966888 999999999999999999 78999998 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
.|+|..+.+.
T Consensus 114 ~i~V~~a~~~ 123 (139)
T 2hgn_A 114 YIELFLNSTT 123 (139)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999988753
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=112.90 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=66.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||||||+.+++++|+.+|++||.|.+| +.+ .+| + ||||+|.+.++|..|+. |||..+. |++|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g----~-~afV~f~~~~~a~~ai~-l~g~~~~----g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG----V-FAIVEMGDVGAREAVLS-QSQHSLG----GHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC----C-EEEEEESSHHHHHHHHT-CSCCEET----TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC----c-EEEEEECCHHHHHHHHh-cCCeEEC----CEEE
Confidence 45799999999999999999999999999987 444 333 3 99999999999999999 9999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 99988654
No 152
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.1e-17 Score=120.43 Aligned_cols=76 Identities=9% Similarity=0.166 Sum_probs=68.9
Q ss_pred CCEEEecCC----CCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecC----HHH----HHHHHH--HhC
Q 029074 17 KRTVYLDNL----SPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMEN----LKQ----AKDVVT--SLH 81 (199)
Q Consensus 17 ~rtlfVgnL----p~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~----~~~----A~~Ai~--~ln 81 (199)
+++|||||| |+.+++..|+.+|++||.|.+|.++.| .||.| +|||||+|.+ +.. |..|+. .+|
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s--lGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALP--LHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCE--EEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCce--eeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 478999999 999999999999999999999999999 99998 9999999995 333 888988 789
Q ss_pred CCceeccCCCcceEEEe
Q 029074 82 EFPFMMSGMPRPVRARA 98 (199)
Q Consensus 82 g~~~~~~g~gr~l~v~~ 98 (199)
|..+. ||+|+|..
T Consensus 80 g~~I~----Gr~irV~l 92 (136)
T 2j8a_A 80 GCFIM----GFKFEVIL 92 (136)
T ss_dssp CEEET----TEEEEEEE
T ss_pred CCeec----CcEEEEEE
Confidence 99999 99999984
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1.3e-16 Score=119.62 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=68.8
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceE-EEEEecCHHHHHHHHHHhCCCceeccCCC--cceE
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC-ALVEMENLKQAKDVVTSLHEFPFMMSGMP--RPVR 95 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~-afVef~~~~~A~~Ai~~lng~~~~~~g~g--r~l~ 95 (199)
.|||+||++.+|+++|+.+|++||.|.+|.++.+ + +|| |||+|.+.++|..|++.|||..|. | ++|+
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~----g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----N--NQFQALLQYADPVSAQHAKLSLDGQNIY----NACCTLR 99 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----T--TEEEEEEEESCHHHHHHHHHHHTTCEEE----TTEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----C--CCcEEEEEECCHHHHHHHHHHcCCCeec----CCCcEEE
Confidence 5899999999999999999999999999988753 2 677 999999999999999999999998 6 8999
Q ss_pred EEeccccc
Q 029074 96 ARAAEVEM 103 (199)
Q Consensus 96 v~~a~~e~ 103 (199)
|.++++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998754
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=113.16 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEE-EeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQ-FIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~-v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.+|+ ++.+.. .|.|||+|.+.++|..|+..|||..+. |++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-----~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-----TAVVNVTYSSKDQARQALDKLNGFQLE----NFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-----SEEEEEEESSHHHHHHHHHHHTTCBCS----SCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEE
Confidence 357899999999999999999999999999995 776521 455999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+|.+.
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999875
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=1.2e-16 Score=111.89 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=63.6
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
.....+|||||||+.+|+++|+++|++||.|.+|+++++ + +|||||+|.+.++|. .++|..+. +.|++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----s--rGfaFV~F~~~~~A~----~~~~~~~~--~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----F--RAFAFVTFADDKVAQ----SLCGEDLI--IKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----C--CSEEEEEESCHHHHH----HHTTCEEE--ETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----C--CCEEEEEECCHHHHH----HHcCCCcc--cCCEE
Confidence 455789999999999999999999999999999999874 4 999999999999988 36776544 44899
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|.|.+|.|
T Consensus 76 v~v~~a~~ 83 (89)
T 3d2w_A 76 VHISNAEP 83 (89)
T ss_dssp EEEEECC-
T ss_pred EEEEEcCC
Confidence 99999875
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.8e-16 Score=124.17 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=74.7
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+|+++|+++|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+.. +|..+. |++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~-~~~~~~----g~~ 83 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS--RGFGFVTYATVEEVDAAMNA-RPHKVD----GRV 83 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHT-CSCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCc--cceEEEEeCCHHHHHHHHhc-CCCEEC----CEE
Confidence 45689999999999999999999999999999999999 78887 99999999999999999986 888888 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|.|.++.+.
T Consensus 84 l~v~~~~~~ 92 (196)
T 1l3k_A 84 VEPKRAVSR 92 (196)
T ss_dssp CEEEECCC-
T ss_pred eeeecccCc
Confidence 999998754
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=8.1e-17 Score=123.66 Aligned_cols=77 Identities=13% Similarity=0.316 Sum_probs=74.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+++|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 167 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS--KGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLL 167 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSE--EEEEEEEESSTTHHHHHHHHHTTCEET----TEECE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCc--ceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 478999999999999999999999999999999999 68998 999999999999999999999999999 99999
Q ss_pred EEec
Q 029074 96 ARAA 99 (199)
Q Consensus 96 v~~a 99 (199)
|.+|
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9987
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=118.13 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=66.6
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceE-EEEEecCHHHHHHHHHHhCCCceeccCCC--cceEE
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHC-ALVEMENLKQAKDVVTSLHEFPFMMSGMP--RPVRA 96 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~-afVef~~~~~A~~Ai~~lng~~~~~~g~g--r~l~v 96 (199)
|||+|||+.+++++|+.+|++||.|.+|.+... .|| |||+|.+.++|..|++.|||..|. | ++|+|
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~----g~~~~l~V 96 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-------NGIQAMVEFESVLCAQKAKAALNGADIY----AGCCTLKI 96 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-------SSEEEEEEESSHHHHHHHHHHHTTCCCB----TTBSEEEE
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCEEEEEECCHHHHHHHHHHhCCCEec----CCCeEEEE
Confidence 789999999999999999999999999998652 486 999999999999999999999988 6 69999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
.+|++..
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998753
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=2.3e-16 Score=121.11 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=74.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCC--CCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTE--FRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg--~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
.++|||+|||+.+|+++|+++|++||.|.+|+++++ .+| .+ +|||||+|.+.++|..|+..|||..+. ++.+++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~~~~~~-~~~~~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS--KGCCFVTFYTRKAALEAQNALHNMKVL-PGMHHP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEE--EEEEEEEESSHHHHHHHHHHHTTTCCC-TTCSSC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCc--ceEEEEEECCHHHHHHHHHHhcCcEEc-cCCccc
Confidence 589999999999999999999999999999999999 554 66 999999999999999999999998764 566889
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
+.+.++.+.
T Consensus 80 ~~~~~~~~~ 88 (175)
T 3nmr_A 80 IQMKPADSE 88 (175)
T ss_dssp CEEEECGGG
T ss_pred eEEcccccc
Confidence 999988754
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=111.29 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=68.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||+|| .+++++|+.+|++||.|.+|.+. .+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PP--RNCAFVTYEKMESADQAVAELNGTQVE----SVQL 79 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TT--TTEEEEEESSHHHHHHHHHHTTTEEET----TEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CC--CCEEEEEECCHHHHHHHHHHhCCCeEC----CeEE
Confidence 34679999996 89999999999999999999985 33 899999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 80 ~v~~a~~~ 87 (97)
T 1x5p_A 80 KVNIARKQ 87 (97)
T ss_dssp EEECCSSC
T ss_pred EEEECCCC
Confidence 99999764
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.7e-16 Score=123.34 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=70.1
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRAR 97 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~ 97 (199)
.+|||+|||+.+|+++|+++|++||.|.+|.+..+ .+ +|||||+|.+.++|..|++.|||..|. |.+++|+|.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~--rgfAFVeF~d~~~A~~Ai~~LnG~~i~--g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NN--QFQALLQYADPVSAQHAKLSLDGQNIY--NACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SS--CEEEEEEESCHHHHHHHHHHSTTBCSS--SSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CC--CCEEEEEECCHHHHHHHHHHhCCCEec--CCCcEEEEE
Confidence 35999999999999999999999999999998643 23 899999999999999999999999986 224999999
Q ss_pred eccccc
Q 029074 98 AAEVEM 103 (199)
Q Consensus 98 ~a~~e~ 103 (199)
++++..
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 998754
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=1.4e-16 Score=141.47 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=76.4
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
++|||+|||+.+|+++|..+|++||.|..|.|+.+ .+|.+ +|||||+|.+.++|..||..|||..|. |++|.|
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~--kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~V 176 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKP--RGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 176 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCc--cceEEEeeccHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 68999999999999999999999999999999999 78998 999999999999999999999999999 999999
Q ss_pred Eeccccc
Q 029074 97 RAAEVEM 103 (199)
Q Consensus 97 ~~a~~e~ 103 (199)
.++.+..
T Consensus 177 ~~a~~~~ 183 (437)
T 3pgw_S 177 DVERGRT 183 (437)
T ss_pred EEeCCCC
Confidence 9998643
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=5.6e-17 Score=121.08 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=71.4
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceE--EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVK--NVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~--~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
...++|||+|||+.+|+++|+++|++| .|. +|+|+.|..|++ +|||||+|.+.++|..|+.. ++..|. ||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~Grs--rGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKI--TGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSS--CSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCC--ceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 346789999999999999999999999 566 899999966998 99999999999999999984 778888 99
Q ss_pred ceEEEecccc
Q 029074 93 PVRARAAEVE 102 (199)
Q Consensus 93 ~l~v~~a~~e 102 (199)
+|+|..+.+.
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999988653
No 164
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=9.3e-17 Score=110.87 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=66.8
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQF----G-------NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~f----G-------~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
...++|||+|||+.+++++|+++|++| | .|.++.+..+ +|||||+|.+.++|..|+ .|||.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 356899999999999999999999999 8 8999998754 899999999999999999 99999
Q ss_pred ceeccCCCcceEEEe
Q 029074 84 PFMMSGMPRPVRARA 98 (199)
Q Consensus 84 ~~~~~g~gr~l~v~~ 98 (199)
.+. |++|+|+.
T Consensus 76 ~~~----g~~l~V~r 86 (87)
T 2hzc_A 76 IFQ----GQSLKIRR 86 (87)
T ss_dssp EET----TEECEEEC
T ss_pred EEC----CeEEEEeC
Confidence 999 99999974
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=6.3e-17 Score=123.71 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=74.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|++ ++|..+. |++|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~ 159 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS--RGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIE 159 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT--SEEEEEEESSHHHHHHHHH-CSEECSS----SSCEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc--ceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEE
Confidence 568999999999999999999999999999999999 78988 9999999999999999998 8999988 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.+|.|
T Consensus 160 V~~a~p 165 (167)
T 2cjk_A 160 IKRAEP 165 (167)
T ss_dssp EEECCC
T ss_pred EeecCC
Confidence 999976
No 166
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=116.95 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=58.3
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CC---CCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YT---EFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~t---g~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
...++|||||||+.+++++|+++|++||.|. +.++.+ .+ |++ +|||||+|.+.++|+.|++.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~--~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPP--KGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCT--TSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCc--ccEEEEEECCHHHHHHHHHhhh
Confidence 3468999999999999999999999999999 888877 55 787 9999999999999999999983
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1.6e-16 Score=127.40 Aligned_cols=78 Identities=13% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRA 96 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v 96 (199)
..+|||+|||+.+|+++|+.+|++||.|.+|++++|..+ + +|||||+|.+.++|..|++.|||..|. |++|+|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~--~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V 175 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-S--KGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFV 175 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-E--EEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-C--ceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 468999999999999999999999999999999998443 4 999999999999999999999999999 999999
Q ss_pred Eeccc
Q 029074 97 RAAEV 101 (199)
Q Consensus 97 ~~a~~ 101 (199)
.+|.+
T Consensus 176 ~~a~~ 180 (213)
T 4f02_A 176 GRFKS 180 (213)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99975
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2e-16 Score=124.06 Aligned_cols=82 Identities=13% Similarity=0.306 Sum_probs=77.2
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+++++|+.+|++||.|.+|.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 185 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS--KGYAFCEYVDINVTDQAIAGLNGMQLG----DKK 185 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE--EEEEEEEESSSSHHHHHHHHHTTCEET----TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc--ceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 44589999999999999999999999999999999999 68988 999999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 186 l~v~~a~~~ 194 (198)
T 2yh0_A 186 LLVQRASVG 194 (198)
T ss_dssp CEEEESCCC
T ss_pred EEEEECCCC
Confidence 999999763
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4e-16 Score=119.16 Aligned_cols=80 Identities=19% Similarity=0.362 Sum_probs=73.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |.+++|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~~~l 163 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP--RGVAFVRYNKREEAQEAISALNNVIPE--GGSQPL 163 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCCCT--TCSSCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc--ceEEEEEECCHHHHHHHHHHhcCCEec--CCCeEE
Confidence 4578999999999999999999999999999999999 58887 999999999999999999999999886 224999
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
+|.+|
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99876
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=3.1e-16 Score=122.78 Aligned_cols=80 Identities=11% Similarity=0.272 Sum_probs=73.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+.+|++||.|..|.++.+ .+|.+ +|||||+|.+.++|..|+.. +|..+. |++|
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i 175 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK--RGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNC 175 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHC-SCCEET----TEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCc--cceEEEEECCHHHHHHHHHh-CCcEEC----CEEE
Confidence 3478999999999999999999999999999999999 68887 99999999999999999986 788888 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
.|.+|.+.
T Consensus 176 ~v~~a~~k 183 (196)
T 1l3k_A 176 EVRKALSK 183 (196)
T ss_dssp EEEECC--
T ss_pred EEEecCCh
Confidence 99999764
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3.8e-16 Score=124.10 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=73.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+++|++||.|.+|.++++ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~l 100 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH--KGFAFVEYEVPEAAQLALEQMNSVMLG----GRNI 100 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CC--CSEEEEEESSHHHHHHHHHHHSSCCCC-----CCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcc--CceEEEEeCCHHHHHHHHHHccCCeeC----CeeE
Confidence 3589999999999999999999999999999999999 68887 999999999999999999999999998 9999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
+|.++..
T Consensus 101 ~v~~~~~ 107 (216)
T 2qfj_A 101 KVGRPSN 107 (216)
T ss_dssp EEECCSC
T ss_pred EEecCCC
Confidence 9987653
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=5.8e-16 Score=111.90 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=75.8
Q ss_pred hccCCCEEEecCCCC-----CCCHHHHHHHhccCCceEEEEEeeC-C-CCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 13 LEKVKRTVYLDNLSP-----QVTEPVIRTALDQFGNVKNVQFIPN-Y-TEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~-----~vte~~L~~~F~~fG~V~~v~v~~d-~-tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
.....++|+|.|+.. .-++++|++.|++||.|.+|.++.+ . ++.+ +|||||+|.+.++|..|+..|||..|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~--~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDE--AVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTT--SEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCC--cEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 345678999999963 2368999999999999999999988 3 3576 99999999999999999999999999
Q ss_pred eccCCCcceEEEecccccCCC
Q 029074 86 MMSGMPRPVRARAAEVEMFDD 106 (199)
Q Consensus 86 ~~~g~gr~l~v~~a~~e~~~~ 106 (199)
. ||+|+|.++.++.+..
T Consensus 82 ~----Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 82 G----GRVVKACFYNLDKFRV 98 (105)
T ss_dssp T----TEECEEEECCHHHHHT
T ss_pred C----CcEEEEEEcCHHHhhh
Confidence 9 9999999998765544
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-17 Score=111.70 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+.+|++||.|.+|+++.+ + +|||||+|.+.++|+. +++..+. +.+++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~--~g~afV~f~~~~~a~~----~~~~~~~--~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----F--RAFAFVTFADDQIAQS----LCGEDLI--IKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----C--CSCCEEECSCHHHHHH----TTTCEEE--ETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----C--CCEEEEEECCHHHHHH----HhcCCce--eCCEEEE
Confidence 4689999999999999999999999999999999864 4 8999999999999975 4555443 3389999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++.+.
T Consensus 72 v~~a~~~ 78 (88)
T 1wf0_A 72 ISNAEPK 78 (88)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998764
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=3.2e-16 Score=124.72 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+|+++|+.+|++||.|.+|+++++.+|.+ +|||||+|.+.++|..|+..++ ..+. |++|+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~--kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAF--KGSIFVVFDSIESAKKFVETPG-QKYK----ETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCE--EEEEEEEESSHHHHHHHHHCTT-CEET----TEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCc--ccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEE
Confidence 458999999999999999999999999999999999977887 9999999999999999998665 4788 99999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|.++.
T Consensus 181 V~~~~ 185 (193)
T 2voo_A 181 ILFKD 185 (193)
T ss_dssp EEETT
T ss_pred EEEhH
Confidence 99875
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=4.1e-16 Score=125.12 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCEEEecCCC-CCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLS-PQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp-~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+||| +.+++++|+.+|++||.|.+|+++.+ + +|||||+|.+.++|..||+.|||..+. |++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~--~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~l 72 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----K--PGAAMVEMADGYAVDRAITHLNNNFMF----GQKM 72 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----S--TTCEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----C--CCEEEEEECCHHHHHHHHHHhCCCEEC----CceE
Confidence 46799999999 79999999999999999999999864 2 899999999999999999999999999 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.+++..
T Consensus 73 ~v~~s~~~ 80 (205)
T 3tyt_A 73 NVCVSKQP 80 (205)
T ss_dssp EEEECSCS
T ss_pred EEEEccCC
Confidence 99998753
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=2.9e-16 Score=114.77 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc--
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP-- 93 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~-- 93 (199)
...+|||+|||+.+++++|+++|++||.|..|.++. .|||||+|.+.++|..||+.|||..|. |++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--------~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--------DGTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT--------TSEEEEEESSHHHHHHHHHHHTTCBCC----CTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec--------CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEee
Confidence 457899999999999999999999999999999875 289999999999999999999999999 998
Q ss_pred ---eEEEeccc
Q 029074 94 ---VRARAAEV 101 (199)
Q Consensus 94 ---l~v~~a~~ 101 (199)
++|..+.+
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 66666554
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=8.6e-16 Score=116.85 Aligned_cols=78 Identities=13% Similarity=0.288 Sum_probs=72.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc--
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR-- 92 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr-- 92 (199)
..++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~ 160 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS--RGVGFIRFDKRIEAEEAIKGLNGQKPS----GATE 160 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCCCT----TCSS
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc--cceEEEEeCCHHHHHHHHHHhcCCccC----CCcc
Confidence 4578999999999999999999999999999999998 68887 999999999999999999999999887 65
Q ss_pred ceEEEec
Q 029074 93 PVRARAA 99 (199)
Q Consensus 93 ~l~v~~a 99 (199)
+|+|.+|
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 5888875
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.5e-16 Score=119.53 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=71.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+|+++|+++|++||.|.+|.++++ .+|.+ +|||||+|.+.++|..|+.. +..+. |+++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~--~~~~~----g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRS--RGFGFLSFEKPSSVDEVVKT--QHILD----GKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSC--CSCEEEEESSTHHHHHHHHS--CCEET----TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCc--cceEEEEEccHHHHHHHHhc--ccccC----CeEc
Confidence 4689999999999999999999999999999999999 78998 99999999999999999984 55677 8999
Q ss_pred EEEeccc
Q 029074 95 RARAAEV 101 (199)
Q Consensus 95 ~v~~a~~ 101 (199)
.+.++.+
T Consensus 74 ~v~~~~~ 80 (167)
T 2cjk_A 74 DPKRAIP 80 (167)
T ss_dssp CCEECCC
T ss_pred ccccccc
Confidence 8888764
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=5.8e-16 Score=127.27 Aligned_cols=81 Identities=14% Similarity=0.351 Sum_probs=71.0
Q ss_pred ccCCCEEEecCCCCCC---------CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 14 EKVKRTVYLDNLSPQV---------TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~v---------te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
....++|||||||+.+ ++++|+.+|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3457899999999998 79999999999999999999863 9999999999999999999999999
Q ss_pred eeccC--------CCcceEEEeccc
Q 029074 85 FMMSG--------MPRPVRARAAEV 101 (199)
Q Consensus 85 ~~~~g--------~gr~l~v~~a~~ 101 (199)
|.++. .|++|.|.+|..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EeccccccccccCCCCEEEEEEccC
Confidence 82211 289999999974
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=107.84 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=63.4
Q ss_pred CCE-EEecCCCCCCCHHH----HHHHhccC-CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 17 KRT-VYLDNLSPQVTEPV----IRTALDQF-GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 17 ~rt-lfVgnLp~~vte~~----L~~~F~~f-G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
..| |||+|||+.+++++ |+++|++| |.|.+| + .|+|||.|.+.++|.+|++.|||.++.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t-----gG~AfV~F~~~esA~~A~~~l~G~~l~---- 72 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T-----GCSAILRFINQDSAERAQKRMENEDVF---- 72 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C-----TTCEEEEESSHHHHHHHHHHHTTCCSS----
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e-----cCEEEEEECCHHHHHHHHHHhcCCccC----
Confidence 345 99999999999988 55899999 599987 2 599999999999999999999999999
Q ss_pred CcceEEEeccc
Q 029074 91 PRPVRARAAEV 101 (199)
Q Consensus 91 gr~l~v~~a~~ 101 (199)
||+|+|.+|+.
T Consensus 73 gr~i~v~~A~~ 83 (96)
T 2diu_A 73 GNRIIVSFTPK 83 (96)
T ss_dssp SSCCEEESSCC
T ss_pred CceEEEEecCC
Confidence 99999999975
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.4e-15 Score=126.22 Aligned_cols=82 Identities=21% Similarity=0.448 Sum_probs=74.8
Q ss_pred hccCCCEEEecCCCCCCCHHHHH----HHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceecc
Q 029074 13 LEKVKRTVYLDNLSPQVTEPVIR----TALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMS 88 (199)
Q Consensus 13 ~~~~~rtlfVgnLp~~vte~~L~----~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~ 88 (199)
+....++|||+|||+.+++++|+ .+|++||.|.+|++++ +|++ +|||||+|.+.++|..|+..|||..+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~-- 78 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKM--RGQAFVIFKEVSSATNALRSMQGFPFY-- 78 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCc--ceEEEEEECCHHHHHHHHHHhcCCeeC--
Confidence 34567899999999999999977 8999999999999876 6777 999999999999999999999999999
Q ss_pred CCCcceEEEecccc
Q 029074 89 GMPRPVRARAAEVE 102 (199)
Q Consensus 89 g~gr~l~v~~a~~e 102 (199)
|++|+|.++...
T Consensus 79 --g~~l~v~~a~~~ 90 (282)
T 3pgw_A 79 --DKPMRIQYAKTD 90 (282)
T ss_pred --CcEEEEEEeccC
Confidence 999999998653
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.7e-15 Score=111.95 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=68.5
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...++|||||| .+++++|+.+|++||.|.+|.+. .+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~--kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PP--RNCAFVTYEKMESADQAVAELNGTQVE----SVQL 103 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TT--TTEEEEECSSHHHHHHHHHHHTTCBCS----SCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CC--CCEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 45689999996 69999999999999999999986 33 999999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 104 ~V~~a~~~ 111 (121)
T 2bz2_A 104 KVNIARKQ 111 (121)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 99999764
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=1.9e-15 Score=116.53 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+.+|++||.|..+ ..+|.+ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~ 167 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKS--KGIAYIEFKSEADAEKNLEEKQGAEID----GRSVS 167 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSC--CSEEEEECSSHHHHHHHHHHHTEEEET----TEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCC--ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45789999999999999999999999988765 567787 999999999999999999999999999 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.+|.|
T Consensus 168 v~~a~~ 173 (175)
T 1fje_B 168 LYYTGE 173 (175)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 999975
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=3e-15 Score=124.23 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=76.0
Q ss_pred cCCCEEEecCCCCCC-CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSPQV-TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~~v-te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+.+ ++++|+.+|++||.|.+|.++.+.+|.+ +|||||+|.+.++|..|+..|||..+. |++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~--~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 255 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL--KGFAVLEYETAEMAEEAQQQADGLSLG----GSH 255 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCE--EEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCc--ccEEEEEeCCHHHHHHHHHHhCCCccC----CeE
Confidence 346789999999995 9999999999999999999999988987 999999999999999999999999998 999
Q ss_pred eEEEeccc
Q 029074 94 VRARAAEV 101 (199)
Q Consensus 94 l~v~~a~~ 101 (199)
|+|.++.+
T Consensus 256 l~v~~a~~ 263 (284)
T 3smz_A 256 LRVSFCAP 263 (284)
T ss_dssp CEEEECCS
T ss_pred EEEEEecC
Confidence 99999875
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=7.8e-15 Score=121.76 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=83.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++||.|.++.++.+ .+|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~--~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i 167 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS--KGYGFAEYMKKDSAARAKSDLLGKPLG----PRTL 167 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE--EEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCcc--ceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3578999999999999999999999999999999998 78987 999999999999999999999999998 9999
Q ss_pred EEEecccccCCCCCCCCCCcccccccCC
Q 029074 95 RARAAEVEMFDDHPAKPGQRIQFQWLDP 122 (199)
Q Consensus 95 ~v~~a~~e~~~~~p~~p~~~~~~r~~~~ 122 (199)
+|.++.+...... ..++..+.+..+++
T Consensus 168 ~v~~a~~~~~~~~-~~~~~~l~v~nlp~ 194 (284)
T 3smz_A 168 YVHWTDAGQLTPA-LLHSRCLCVDRLPP 194 (284)
T ss_dssp EEEECCGGGCCTT-TTSCSEEEEECCCT
T ss_pred EEEECCCCCCCcc-cCCccEEEEecCCc
Confidence 9999987543221 12334444444443
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=2.9e-15 Score=120.15 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCce--EEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNV--KNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V--~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.++|||+|||+.+|+++|+++|++||.| .+++++.+. |.+ +|||||+|.+.++|..||..|||..+...+...|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~--~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SER--SSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSS--SEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCC--ceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 4689999999999999999999999999 899988775 444 79999999999999999999999999856556678
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77764
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=113.72 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=71.2
Q ss_pred CCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
.+++|||+|||+ .+++++|+.+|++||.|.+|+++.+. +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~------~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l 71 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLH----GKPI 71 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC------SSCCEEECTTTHHHHHHHHHHTTCCCS----SCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCeec----CeEE
Confidence 468999999999 99999999999999999999998752 689999999999999999999999998 9999
Q ss_pred EEEecccc
Q 029074 95 RARAAEVE 102 (199)
Q Consensus 95 ~v~~a~~e 102 (199)
+|.++.+.
T Consensus 72 ~v~~a~~~ 79 (198)
T 1qm9_A 72 RITLSKHQ 79 (198)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99998753
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=2.5e-14 Score=115.81 Aligned_cols=78 Identities=23% Similarity=0.368 Sum_probs=72.0
Q ss_pred cCCCEEEecCCCC-CCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcc
Q 029074 15 KVKRTVYLDNLSP-QVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRP 93 (199)
Q Consensus 15 ~~~rtlfVgnLp~-~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~ 93 (199)
...++|||+|||+ .+++++|+++|++||.|.+|+++.+. +|||||+|.+.++|..|++.|||..+. |++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~------~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~ 101 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK------KENALVQMADGNQAQLAMSHLNGHKLH----GKP 101 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT------SCCEEEEESCHHHHHHHHHHHTTCBCS----SSB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC------CCEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 4568999999999 99999999999999999999998752 689999999999999999999999998 999
Q ss_pred eEEEecccc
Q 029074 94 VRARAAEVE 102 (199)
Q Consensus 94 l~v~~a~~e 102 (199)
|+|.++.+.
T Consensus 102 l~v~~a~~~ 110 (229)
T 2adc_A 102 IRITLSKHQ 110 (229)
T ss_dssp CEEECCSCC
T ss_pred EEEEEecCc
Confidence 999998753
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=4.9e-15 Score=123.43 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=73.5
Q ss_pred cCCCEEEecCCCCC-CCHHHHHHHhccCCceEEEEEeeCC--CCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCC
Q 029074 15 KVKRTVYLDNLSPQ-VTEPVIRTALDQFGNVKNVQFIPNY--TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 15 ~~~rtlfVgnLp~~-vte~~L~~~F~~fG~V~~v~v~~d~--tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~g 91 (199)
...++|||+|||+. +++++|+.+|++||.|.+|+++.+. ||.+ +|||||+|.+.++|..|+ .|||..|. |
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~--~g~afV~F~~~~~A~~A~-~l~g~~~~----g 280 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFN--NCCAFMVFENKDSAERAL-QMNRSLLG----N 280 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CC--CEEEEEEESSHHHHHHHG-GGTTEEET----T
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCC--ceEEEEEeCCHHHHHHHH-HhcCCEEC----C
Confidence 34589999999999 9999999999999999999999984 4887 999999999999999999 99999998 9
Q ss_pred cceEEEeccc
Q 029074 92 RPVRARAAEV 101 (199)
Q Consensus 92 r~l~v~~a~~ 101 (199)
++|+|.+|.+
T Consensus 281 ~~i~V~~a~~ 290 (292)
T 2ghp_A 281 REISVSLADK 290 (292)
T ss_dssp EEEEEEECCC
T ss_pred cEEEEEEecC
Confidence 9999999975
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=9.4e-16 Score=118.27 Aligned_cols=100 Identities=10% Similarity=0.195 Sum_probs=78.2
Q ss_pred ccCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 14 EKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
....++|||+|||+.+++++|+.+|++||.+..+ ++.+ .+|.+ +|||||+|.+.++|..|+ .|||..+. |+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~--~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 81 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTN--RKFGYVDFESAEDLEKAL-ELTGLKVF----GN 81 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETT--TTEEEEEESSHHHHHHHH-HGGGEEET----TE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCcc--ccEEEEEECCHHHHHHHH-hcCCCEeC----Ce
Confidence 3456899999999999999999999999987763 3444 77887 999999999999999999 59999999 99
Q ss_pred ceEEEecccccCCCCCCCCCCcccccccCCC
Q 029074 93 PVRARAAEVEMFDDHPAKPGQRIQFQWLDPN 123 (199)
Q Consensus 93 ~l~v~~a~~e~~~~~p~~p~~~~~~r~~~~~ 123 (199)
+|+|.++.+.. ..+..+.+.+.+..+++.
T Consensus 82 ~l~v~~~~~~~--~~~~~~~~~l~v~nlp~~ 110 (175)
T 1fje_B 82 EIKLEKPKGRD--SKKVRAARTLLAKNLSFN 110 (175)
T ss_dssp EEEEECCCCSS--CSTTGGGGEEEEESCCSS
T ss_pred EEEEecCCCcc--ccccccCCEEEEeCCCCC
Confidence 99999987532 122223444444444433
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=1.3e-14 Score=120.90 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=77.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
..++|||+|||+.+++++|+.+|++|| .|.+|.++.+..|.+ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 189 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTS--RRFAYIDVTSKEDARYCVEKLNGLKIE----GYTL 189 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCc--ceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 357899999999999999999999999 999999999866877 999999999999999999999999998 9999
Q ss_pred EEEecccccCCCCC---CCCCCcccccccCCC
Q 029074 95 RARAAEVEMFDDHP---AKPGQRIQFQWLDPN 123 (199)
Q Consensus 95 ~v~~a~~e~~~~~p---~~p~~~~~~r~~~~~ 123 (199)
.|.++.|.....++ ..++..+.+..+++.
T Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 190 VTKVSNPLEKSKRTDSATLEGREIMIRNLSTE 221 (292)
T ss_dssp EEEECCCC---------CCTTTEEEEEEECTT
T ss_pred EEEECCCCcccccccccCCCCceEEEECCCcc
Confidence 99999875433322 233444555555443
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.5e-14 Score=119.42 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=69.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||||||+.+|+++|+.+|++||.|.+|.+.++ +|||||+|.+.++|..|+..|||..+. |++|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-------kg~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~ 89 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-------RGFGFIRLESRTLAEIAKAELDGTILK----SRPLR 89 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-------TTEEEEECSSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-------CcEEEEEECCHHHHHHHHHHcCCcEEC----CceeE
Confidence 3468999999999999999999999999999999653 899999999999999999999999998 99999
Q ss_pred EEeccc
Q 029074 96 ARAAEV 101 (199)
Q Consensus 96 v~~a~~ 101 (199)
|.++.+
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999875
No 193
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=2e-15 Score=108.79 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=63.7
Q ss_pred ecCCCCCCCHHHHHHHh------------ccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 22 LDNLSPQVTEPVIRTAL------------DQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 22 VgnLp~~vte~~L~~~F------------~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
++|||+.+++++|++.| ++||.|.+|.++++.+|++ +|||||+|.+.++|..|+..|||..+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~--~G~~fV~f~~~~~A~~A~~~lng~~~~--- 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHL--VGNVYVKFRREEDAEKAVIDLNNRWFN--- 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSS--EEEEEEEESCHHHHHHHHHHHTTCEET---
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCc--cEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 46677777777777666 9999999999999877887 999999999999999999999999999
Q ss_pred CCcceEEEec
Q 029074 90 MPRPVRARAA 99 (199)
Q Consensus 90 ~gr~l~v~~a 99 (199)
||+|+|.++
T Consensus 95 -Gr~i~v~~s 103 (104)
T 1jmt_A 95 -GQPIHAELS 103 (104)
T ss_dssp -TEECCEEEC
T ss_pred -CEEEEEEEc
Confidence 999999876
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=4.1e-14 Score=108.42 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=66.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQF----G-------NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~f----G-------~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
..++|||+|||+.+|+++|+++|++| | .|.++.+.. + +|||||+|.+.++|..|+ .+||..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~--~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----D--KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----T--TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----C--CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 46899999999999999999999999 6 677776643 3 899999999999999999 899999
Q ss_pred eeccCCCcceEEEeccc
Q 029074 85 FMMSGMPRPVRARAAEV 101 (199)
Q Consensus 85 ~~~~g~gr~l~v~~a~~ 101 (199)
+. |++|+|.++.+
T Consensus 75 ~~----g~~i~v~~~~~ 87 (172)
T 2g4b_A 75 FQ----GQSLKIRRPHD 87 (172)
T ss_dssp ET----TEECEEECCSS
T ss_pred ec----CceeeecCCcc
Confidence 98 99999998764
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=2e-14 Score=103.77 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=71.8
Q ss_pred cCCCEEEecCC--CCCCC--------HHHHHHHhccCCceEEEEEeeC-CC--CCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 15 KVKRTVYLDNL--SPQVT--------EPVIRTALDQFGNVKNVQFIPN-YT--EFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 15 ~~~rtlfVgnL--p~~vt--------e~~L~~~F~~fG~V~~v~v~~d-~t--g~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
..++.|.+.|+ |..+. +++|++.|++||.|.+|.++++ .+ +++ +|||||+|.+.++|.+|+..||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~--~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPG--CGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTT--TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCC--cEEEEEEECCHHHHHHHHHHhC
Confidence 45788999997 33333 3689999999999999999988 43 345 8999999999999999999999
Q ss_pred CCceeccCCCcceEEEecccccCC
Q 029074 82 EFPFMMSGMPRPVRARAAEVEMFD 105 (199)
Q Consensus 82 g~~~~~~g~gr~l~v~~a~~e~~~ 105 (199)
|..|. ||+|+|.++.++.+.
T Consensus 81 G~~f~----GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 81 GRKFA----NRVVVTKYCDPDSYH 100 (105)
T ss_dssp TCEET----TEECEEEEECHHHHH
T ss_pred CCEeC----CCEEEEEEeCHHHHh
Confidence 99999 999999998765443
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.1e-14 Score=101.15 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=67.3
Q ss_pred cCCCEEEecCCCCCCC-----------HHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 15 KVKRTVYLDNLSPQVT-----------EPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vt-----------e~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
...++|+|.||..... +++|+.+|++||.|.+|.+ .+. .+ +|||||+|.+.++|..|+..|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~--~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HP--DGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CT--TCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CC--CEEEEEEECCHHHHHHHHHHcCCC
Confidence 4578999999944332 5799999999999999965 543 24 999999999999999999999999
Q ss_pred ceeccCCCcceEEEeccc
Q 029074 84 PFMMSGMPRPVRARAAEV 101 (199)
Q Consensus 84 ~~~~~g~gr~l~v~~a~~ 101 (199)
.|. ||+|+|.++.+
T Consensus 88 ~~~----gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFG----GRQITAQAWDG 101 (112)
T ss_dssp EET----TEECEEEECCS
T ss_pred EEC----CcEEEEEEeCC
Confidence 999 99999999976
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=1.2e-13 Score=108.07 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC----C-------ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQF----G-------NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~f----G-------~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
..++|||+|||+.+|+++|+++|++| | .|.++.+ +.+ +|||||+|.+.++|..|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~--~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQD--KNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETT--TTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCC--CCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 46899999999999999999999999 4 5555554 444 999999999999999999 899999
Q ss_pred eeccCCCcceEEEecccc
Q 029074 85 FMMSGMPRPVRARAAEVE 102 (199)
Q Consensus 85 ~~~~g~gr~l~v~~a~~e 102 (199)
+. |++|+|.++.+.
T Consensus 75 ~~----g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQ----GQSLKIRRPHDY 88 (198)
T ss_dssp ET----TEEEEEECCCCC
T ss_pred Ec----CceEEEeCCCCC
Confidence 98 999999988653
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=3.6e-14 Score=104.60 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=71.8
Q ss_pred CCCEEEecCCCC--CC---CHHHHHHHhccCCceEEEEEeeC-C----CCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 16 VKRTVYLDNLSP--QV---TEPVIRTALDQFGNVKNVQFIPN-Y----TEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 16 ~~rtlfVgnLp~--~v---te~~L~~~F~~fG~V~~v~v~~d-~----tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
.+++|++.|+-. .+ .+++|++.|++||.|.+|.|+++ . ++++ +||+||+|.+.++|..|+..|||..|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~--~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI--IVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEE--EEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcc--eEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 578999999832 22 36899999999999999999988 3 3455 79999999999999999999999999
Q ss_pred eccCCCcceEEEecccccCC
Q 029074 86 MMSGMPRPVRARAAEVEMFD 105 (199)
Q Consensus 86 ~~~g~gr~l~v~~a~~e~~~ 105 (199)
. ||+|+|.++.++.|.
T Consensus 97 ~----GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 97 A----GRKVVAEVYDQERFD 112 (118)
T ss_dssp T----TEECEEEEECHHHHH
T ss_pred C----CcEEEEEEcChHhcc
Confidence 9 999999998765443
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=8.1e-14 Score=120.01 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=67.1
Q ss_pred cCCCEEEecC--CCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 15 KVKRTVYLDN--LSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 15 ~~~rtlfVgn--Lp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
...++||||| |++.+|+++|+++|++||.|.+|.+.. + +|||||+|.+.++|+.|++.|||..+. +..|+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~--kgfaFV~f~~~~~A~~Ai~~lnG~~~~-~~~g~ 87 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----N--KPYSFARYRTTEESKRAYVTLNGKEVV-DDLGQ 87 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----T--CSEEEEEESSHHHHHHHHHHTTTCEEE-CTTSC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----C--CCEEEEEECCHHHHHHHHHHhCCCccc-cccCC
Confidence 4467999999 589999999999999999999987753 3 899999999999999999999999884 44455
Q ss_pred --ceEEEecc
Q 029074 93 --PVRARAAE 100 (199)
Q Consensus 93 --~l~v~~a~ 100 (199)
++.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 78888874
No 200
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=1.3e-13 Score=114.27 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
..++|||+|||+.+++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|..|+..|||..+. .|++|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~---~---~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~ 276 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG---R---HDIAFVEFDNEVQAGAARDALQGFKIT---QNNAMK 276 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC---C---CcEEEEEeCCHHHHHHHHHHcCCcEeC---CCCEEE
Confidence 4678999999999999999999999999999999854 2 599999999999999999999998765 278999
Q ss_pred EEecc
Q 029074 96 ARAAE 100 (199)
Q Consensus 96 v~~a~ 100 (199)
|.+|+
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99885
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=2e-13 Score=107.38 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=69.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+++|++|| .|.+|+++.+ . +|||||+|.+.++|..|+..|||..+. .|++|+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~--~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~ 190 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----D--RKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLR 190 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----T--SSCEEEECSSHHHHHHHHHHHTSSCCS---SCCSCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----C--CcEEEEEeCCHHHHHHHHHHhcCCccC---CCCeEE
Confidence 67899999999999999999999999 9999998653 2 799999999999999999999999763 379999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++++.
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9998763
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=3.9e-13 Score=108.71 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceE
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFG-NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVR 95 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG-~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~ 95 (199)
.++|||+|||+.+++++|+.+|++|| .|..|+++.+ + +|||||+|.+.++|..|+..|||..+. .|++|+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~--~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~ 221 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----D--RKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLR 221 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----S--TTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----C--CcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEE
Confidence 58899999999999999999999999 9999999652 2 899999999999999999999998763 379999
Q ss_pred EEecccc
Q 029074 96 ARAAEVE 102 (199)
Q Consensus 96 v~~a~~e 102 (199)
|.++++.
T Consensus 222 v~~a~~~ 228 (229)
T 2adc_A 222 VSFSKST 228 (229)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9999763
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=93.37 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEecccc
Q 029074 27 PQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVE 102 (199)
Q Consensus 27 ~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e 102 (199)
..+++++|+.+|++||.|.+|.++ +.+ +|||||+|.+.++|..|+..+++ +. +++|+|.++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~--rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKK--PGTAVVEFATVKAAELAVQNEVG--LV----DNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSS--SSEEEEEESCHHHHHHHHHTCCB--CS----SSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCC--CCEEEEEECCHHHHHHHHHhcCC--CC----CCeEEEEEccCC
Confidence 568999999999999999999997 355 99999999999999999998655 45 899999998753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=4.4e-12 Score=92.82 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred CCCEEEecCCCCCC----------CHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCce
Q 029074 16 VKRTVYLDNLSPQV----------TEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPF 85 (199)
Q Consensus 16 ~~rtlfVgnLp~~v----------te~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~ 85 (199)
..+.|.+.|+=..- .+++|++.|++||.|.+|.+.++. + +|||||+|.+.++|..|+..|||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~--~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---A--QGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---T--TCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---C--cEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45678888862211 135789999999999999886652 3 89999999999999999999999999
Q ss_pred eccCCCcceEEEeccccc
Q 029074 86 MMSGMPRPVRARAAEVEM 103 (199)
Q Consensus 86 ~~~g~gr~l~v~~a~~e~ 103 (199)
. ||+|+|.++....
T Consensus 81 ~----GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 81 A----GKMITAAYVPLPT 94 (114)
T ss_dssp T----TEECEEEEECHHH
T ss_pred C----CEEEEEEEEcHHH
Confidence 9 9999999997543
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=5.4e-10 Score=82.43 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=62.7
Q ss_pred ccCCCEEEecCCCCC-CCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecC-HHHHHHHHHHhCCCceeccCCC
Q 029074 14 EKVKRTVYLDNLSPQ-VTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMEN-LKQAKDVVTSLHEFPFMMSGMP 91 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~-vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~-~~~A~~Ai~~lng~~~~~~g~g 91 (199)
-.....|||+||++. ++.++|+++|++||.|..|.++.+ .-.|||.|.+ ..+|..|+..+|...+.|. +
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~--g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-------AKEGIILFKEKAKEALGKAKDANNGNLQLR--N 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-------CSEEEEEESSCHHHHHHHHHHTTTSCBCTT--S
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-------CCEEEEEECCChHHHHHHHHHhhcCCcEEe--C
Confidence 345567999999999 999999999999999999999875 3469999999 8999999999964443333 5
Q ss_pred cceEEEec
Q 029074 92 RPVRARAA 99 (199)
Q Consensus 92 r~l~v~~a 99 (199)
..+++...
T Consensus 86 ~~~~~evL 93 (121)
T 1owx_A 86 KEVTWEVL 93 (121)
T ss_dssp SSEEEEEC
T ss_pred cEEEEEEC
Confidence 66666644
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=79.94 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCEEEecCCCC----CCCH----HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceec
Q 029074 16 VKRTVYLDNLSP----QVTE----PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMM 87 (199)
Q Consensus 16 ~~rtlfVgnLp~----~vte----~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~ 87 (199)
...||+|...|. .... .+|...|++||.|..++++.+ .+||+|.+.++|.+||+ |||..+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---------~~fVtF~d~~sAlaAi~-mnG~~v~- 74 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---------KMWVTFLEGSSALNVLS-LNGKELL- 74 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---------SEEEEESSHHHHHHGGG-GTTCEET-
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---------CEEEEECChHHHHHHHh-cCCeEeC-
Confidence 456888888762 3333 578999999999999999854 48999999999999998 9999999
Q ss_pred cCCCcceEEEecccc
Q 029074 88 SGMPRPVRARAAEVE 102 (199)
Q Consensus 88 ~g~gr~l~v~~a~~e 102 (199)
||.|+|+.++|.
T Consensus 75 ---Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 ---NRTITIALKSPS 86 (91)
T ss_dssp ---TEEEEEEECCCS
T ss_pred ---CeEEEEEeCCCC
Confidence 999999999875
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=5.5e-10 Score=89.67 Aligned_cols=71 Identities=21% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCHHHHHHHhccCCceEEEEEeeC-C----CCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcceEEEeccccc
Q 029074 29 VTEPVIRTALDQFGNVKNVQFIPN-Y----TEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEM 103 (199)
Q Consensus 29 vte~~L~~~F~~fG~V~~v~v~~d-~----tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l~v~~a~~e~ 103 (199)
-.+++|+..|++||.|.++.++++ . +|++ +|++||+|.+.++|.+|+..|||..|. ||+|++.++..+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~--~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEI--IVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCE--EEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCc--eeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcCHHH
Confidence 345789999999999999999865 3 3476 999999999999999999999999999 9999999987554
Q ss_pred CC
Q 029074 104 FD 105 (199)
Q Consensus 104 ~~ 105 (199)
|.
T Consensus 215 f~ 216 (222)
T 3dxb_A 215 FD 216 (222)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=7.4e-09 Score=72.76 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred ccCCCEEEecCCCCC-----CCH----HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 14 EKVKRTVYLDNLSPQ-----VTE----PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 14 ~~~~rtlfVgnLp~~-----vte----~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
.....||+|..++.. +.. .+|.+.|++||.|..++++.| + +||+|.+.++|.+||+ |||..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~--~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------Q--MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------E--EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------c--EEEEEcChHHHHHHHh-cCCee
Confidence 345679999988743 222 468899999999999999865 3 8999999999999998 99999
Q ss_pred eeccCCCcceEEEecc
Q 029074 85 FMMSGMPRPVRARAAE 100 (199)
Q Consensus 85 ~~~~g~gr~l~v~~a~ 100 (199)
+. ||.|+|+.-.
T Consensus 82 v~----Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VK----GRAVKISGPS 93 (95)
T ss_dssp ET----TEEEEEECCC
T ss_pred eC----CeEEEEeccC
Confidence 99 9999998644
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=6.8e-07 Score=64.27 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC-----CceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCC
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQF-----GNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGM 90 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~f-----G~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~ 90 (199)
..|+|-+=|||..++...|+.+..++ |.+.++.+..| .|-|+|+|.+...|.+|.-.|+|..|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-------H~GAivef~d~~~AgKasLaL~G~ef~---- 88 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-------FNGAIIIFRDSKFAAKMLMILNGSQFQ---- 88 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-------TTEEEEECSCHHHHHHHHHHHSSEEET----
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-------CCceEEEEccchhhHHHHhhcCCeeec----
Confidence 46899999999999999999999999 99999999877 677999999999999999999999999
Q ss_pred CcceEEEec
Q 029074 91 PRPVRARAA 99 (199)
Q Consensus 91 gr~l~v~~a 99 (199)
||.|++.-.
T Consensus 89 gr~Lr~gTv 97 (117)
T 2l9w_A 89 GKVIRSGTI 97 (117)
T ss_dssp TEEEEEECH
T ss_pred CeEEEecCH
Confidence 999999743
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=0.00012 Score=52.04 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred cCCCEEEecCCCCCC-CH----HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 15 KVKRTVYLDNLSPQV-TE----PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 15 ~~~rtlfVgnLp~~v-te----~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
-.+.+|+|.||+..+ +. +.++.+|.+|+++......+. -.-..|.|.++++|.+|-..|++..|+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-------FRRirv~F~~~~~A~~AR~~Lh~~~f~--- 72 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-------FKRVRINFSNPLSAADARLRLHKTEFL--- 72 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-------TTEEEEECSSTTHHHHHHHTSTTSEET---
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-------ceEEEEEeCChHHHHHHHHHhccceec---
Confidence 357899999998865 22 467999999999888777653 234579999999999999999999999
Q ss_pred CCcceEEEeccccc
Q 029074 90 MPRPVRARAAEVEM 103 (199)
Q Consensus 90 ~gr~l~v~~a~~e~ 103 (199)
|+.++|-++.+..
T Consensus 73 -g~~~r~YFgq~~~ 85 (104)
T 1wey_A 73 -GKEMKLYFAQTLH 85 (104)
T ss_dssp -TEECEEECCCCSS
T ss_pred -CceeEEEecCCCC
Confidence 9999999998543
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.48 E-value=0.00087 Score=46.56 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=57.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC-CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN-YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d-~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
.+|-|.+||+.+|++++.+.++..+.+.-..++.. .+......+-|+|.|.+.+++..-.+.++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47899999999999999999999988776666654 2222223688999999999999999999999886
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0038 Score=44.18 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=57.6
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhcc-----CCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccC
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQ-----FGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSG 89 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~-----fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g 89 (199)
-..++|.|.|||+.++++.|.-+|+. =|.|.++... .+-|+|+|.+...|++.+.. ..+.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~---------~~~AvItF~d~~va~rVL~k-~~H~L~--- 72 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL---------GCGGVLTFREPADAERVLAQ-ADHELH--- 72 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE---------TTEEEEEESSHHHHHHHHTC-SCCBSS---
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc---------CCcEEEEEcChHHHHHHhcC-Ccceec---
Confidence 34689999999999999999999987 2578888764 35689999999999998863 245677
Q ss_pred CCcceEEEecc
Q 029074 90 MPRPVRARAAE 100 (199)
Q Consensus 90 ~gr~l~v~~a~ 100 (199)
+.+|.|.+..
T Consensus 73 -~~~LsV~P~~ 82 (104)
T 2dhx_A 73 -GAQLSLRPAP 82 (104)
T ss_dssp -SSBCEEEECC
T ss_pred -CeEEEEEcCC
Confidence 7888887643
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.75 E-value=0.0028 Score=44.56 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=45.8
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
.||+-++|+.+...+|..+|++||. ..|.++.| ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD--------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET--------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 4555599999999999999999994 46777764 469999999999999999875
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.65 E-value=0.0037 Score=43.82 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=45.0
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
||+-++|+.+...+|..+|++||.| .|+++.| ..|||.|.+++.|..|+..++
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD--------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD--------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET--------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence 5544999999999999999999954 5777764 469999999999999999774
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.31 E-value=0.0023 Score=56.88 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=41.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHH
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVT 78 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~ 78 (199)
.|+|||. .|..+++.+|.++|++||+|.++.+-.+ . .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~---~---g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES---F---GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS---S---SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc---C---CeEEEEEeCCHHHHHHHHh
Confidence 5899998 7999999999999999999999877543 1 4699999999988886654
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.16 E-value=0.0071 Score=42.35 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeC--CCCCCCCceEEEEEecCHHHHHHHHHHhCCCcee
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPN--YTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFM 86 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d--~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~ 86 (199)
+-+|-|..|||.+|++++.+.++..-.+.....+.. ..+.+ ...-|+|.|.+.++...-.+.++|+.|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~-~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPH-LYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCS-CCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCC-cceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 457999999999999998877776544432222221 12222 2467899999999999999999999886
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.15 E-value=0.008 Score=44.50 Aligned_cols=38 Identities=11% Similarity=-0.034 Sum_probs=35.0
Q ss_pred CceEEEEEecCHHHHHHHHHHh-CCCceeccCCCcceEEEeccc
Q 029074 59 IPHCALVEMENLKQAKDVVTSL-HEFPFMMSGMPRPVRARAAEV 101 (199)
Q Consensus 59 ~~G~afVef~~~~~A~~Ai~~l-ng~~~~~~g~gr~l~v~~a~~ 101 (199)
.+|+++|+|.+.++|++|+..+ ||..+. | ++++.++.+
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~----G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVD----G-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCC----C-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCC----C-ceecccccC
Confidence 4899999999999999999999 999988 8 999998865
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.07 E-value=0.018 Score=42.76 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=27.9
Q ss_pred EEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 46 NVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 46 ~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
.+.++.+.. ++ +|||||+|.+.++|+.|+..+++.
T Consensus 2 ~~kl~ln~~-~~--~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TL--KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SC--EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cc--cchhHHHHHHHHhHHHHHHhhccc
Confidence 456666633 45 999999999999999999888754
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.84 E-value=0.04 Score=39.95 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=54.8
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCcce
Q 029074 15 KVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPV 94 (199)
Q Consensus 15 ~~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr~l 94 (199)
...+.|.|-+.|+.. -+.+...|++||.|.+.... ++ ..+-.|.|.+..+|++|+. .||..+. .+-.|
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~---g~~mI 89 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NT----GNWMHIRYQSKLQARKALS-KDGRIFG---ESIMI 89 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SS----SSEEEEEESSHHHHHHHHT-TTTCEET---TTEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CC----CCeEEEEeCCHHHHHHHHH-hCCeEec---CCEEE
Confidence 345679999999885 45566789999999987762 11 5689999999999999997 5888664 12456
Q ss_pred EEEec
Q 029074 95 RARAA 99 (199)
Q Consensus 95 ~v~~a 99 (199)
.|.+.
T Consensus 90 GV~p~ 94 (119)
T 1wwh_A 90 GVKPC 94 (119)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66654
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.03 E-value=0.05 Score=40.07 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=53.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEE-EEEeeCCC---------CCC---CCceEEEEEecCHHHHHHHHHHhCCCc
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKN-VQFIPNYT---------EFR---NIPHCALVEMENLKQAKDVVTSLHEFP 84 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~-v~v~~d~t---------g~s---~~~G~afVef~~~~~A~~Ai~~lng~~ 84 (199)
.-|.|=+.|+..+... ...|++||.|.+ .....+.. .+. ....+-.|.|.++.+|.+|+. -||..
T Consensus 8 ~~VtVFGFp~~~~~~V-I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQV-IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHHH-HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHHH-HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4467777877665554 467999999865 22111000 000 014688999999999999996 79998
Q ss_pred eeccCCCcceEEEeccc
Q 029074 85 FMMSGMPRPVRARAAEV 101 (199)
Q Consensus 85 ~~~~g~gr~l~v~~a~~ 101 (199)
|. |.-|.|.+..+
T Consensus 86 i~----G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FN----GVLLGVIPYTK 98 (132)
T ss_dssp ET----TEECEEEECCH
T ss_pred eC----cEEEEEEECCH
Confidence 87 77888887754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.71 E-value=0.84 Score=40.74 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 19 TVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 19 tlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
.++|+ +|..+...+|..+|+.||.| +|+++. ...|||.|.+.+.|..++..++..
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid--------dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID--------DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS--------SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc--------CCeEEEEECCHHHHHHHHHHHHhC
Confidence 35665 89999999999999999954 566653 457999999999999999988643
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.60 E-value=23 Score=22.39 Aligned_cols=68 Identities=9% Similarity=0.248 Sum_probs=42.3
Q ss_pred EEEecC-CCCCCCHHHHHHHhccCC-----ceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCCceeccCCCc
Q 029074 19 TVYLDN-LSPQVTEPVIRTALDQFG-----NVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEFPFMMSGMPR 92 (199)
Q Consensus 19 tlfVgn-Lp~~vte~~L~~~F~~fG-----~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~~~~~~g~gr 92 (199)
++||+. --..+...+|..++..-+ .|-.+.+. ..|.||+-.. ..|..++..|++..+. |+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---------d~~s~v~v~~-~~~~~~~~~l~~~~i~----g~ 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---------DNASYVEILN-GKGPHVLKVMKNTTVK----GK 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---------SSCEEEEECT-TCHHHHHHHHTTCCC-------
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---------CCcEEEEECH-HHHHHHHHHhccccCc----Cc
Confidence 455532 234566777777776544 35566663 4588999876 6788899999998888 99
Q ss_pred ceEEEecc
Q 029074 93 PVRARAAE 100 (199)
Q Consensus 93 ~l~v~~a~ 100 (199)
+++++.++
T Consensus 68 ~~~v~~~~ 75 (76)
T 2g0c_A 68 QLKVNKAN 75 (76)
T ss_dssp CCCEEECC
T ss_pred eEEEEECC
Confidence 99888653
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.57 E-value=13 Score=28.34 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=38.4
Q ss_pred CEEEecCCCC---------CCCHHHHHHHh--ccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHH
Q 029074 18 RTVYLDNLSP---------QVTEPVIRTAL--DQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQA 73 (199)
Q Consensus 18 rtlfVgnLp~---------~vte~~L~~~F--~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A 73 (199)
-++.|-|+|. ..+...|+..| +.|.++. |+.+.+..|. .|++.|.|.+.-..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh---~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGH---SGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBE---EEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCC---ceeEEEEecCChHH
Confidence 4567778876 24567899977 9998865 6667777776 89999999865443
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=58.28 E-value=41 Score=22.93 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 16 VKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 16 ~~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
...-+-|-|+|..+-..++.-+....|---.|..+ .|-|.+.|.+.++-..||..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi---------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---------cCeeEEEecCChHHHHHHHHHH
Confidence 34457788999999988887777777765555553 6789999999999999998763
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=35.07 E-value=41 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=26.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCceEEEEEe
Q 029074 17 KRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFI 50 (199)
Q Consensus 17 ~rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~ 50 (199)
..-+.|+|||+.++...|..++.. +.+.++.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 456899999999999999999987 666554443
No 226
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.30 E-value=1.2e+02 Score=20.11 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhHHhhh
Q 029074 144 ASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM 180 (199)
Q Consensus 144 ~~~~~k~~~~~~~~l~~~q~e~l~~~~~~~~~~~~~~ 180 (199)
...+-+.+.++-.+|.+.+++.|+.|.+..+.++..+
T Consensus 31 e~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 31 ERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666655555544
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.10 E-value=20 Score=29.03 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=26.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEe
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFI 50 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~ 50 (199)
....|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865556555443
No 228
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=25.98 E-value=8 Score=33.59 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=24.7
Q ss_pred HHHHhccCCceEEEEEee----C--CCCCCCCceEE--EEEecCHHHHHHHH
Q 029074 34 IRTALDQFGNVKNVQFIP----N--YTEFRNIPHCA--LVEMENLKQAKDVV 77 (199)
Q Consensus 34 L~~~F~~fG~V~~v~v~~----d--~tg~s~~~G~a--fVef~~~~~A~~Ai 77 (199)
|..+|.++|+|..|..+. + .+... .|++ |+.|.....+..++
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~--~gia~~~~~f~~~~~~~~~~ 58 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPY--CGIAPYIREFEDPRDAPPPT 58 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCc--ccHHHHHHhhcCcccccccc
Confidence 788999999998773222 2 11121 3444 77777655444443
No 229
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=25.19 E-value=62 Score=19.34 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=5.9
Q ss_pred HHHHHHHHhHhh
Q 029074 161 QQEETLKQNYKK 172 (199)
Q Consensus 161 ~q~e~l~~~~~~ 172 (199)
+|.+.|+..|.+
T Consensus 28 EQVeLL~rIyd~ 39 (52)
T 2o1k_A 28 EQVELLKRIYDK 39 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555444
No 230
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.06 E-value=13 Score=27.30 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=16.4
Q ss_pred HHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEec
Q 029074 32 PVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEME 68 (199)
Q Consensus 32 ~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~ 68 (199)
+++..+|...|.|+.... .+|||||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---------CCCeeEEeeC
Confidence 345566777777664322 1899999975
No 231
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=23.88 E-value=71 Score=22.69 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=45.6
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHH-HHhCCCceeccCC----CcceEEEecccccCCCCCCCCCCccccc
Q 029074 44 VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVV-TSLHEFPFMMSGM----PRPVRARAAEVEMFDDHPAKPGQRIQFQ 118 (199)
Q Consensus 44 V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai-~~lng~~~~~~g~----gr~l~v~~a~~e~~~~~p~~p~~~~~~r 118 (199)
|-.|++.+..+|. .|-|...|.++..-...- ..+.|. +++.-- -+++.+++... ....+.|.
T Consensus 15 vpdVrLtRsrdg~---~g~A~f~F~~p~al~~~~~~~itgm-~LiDeEGei~t~~v~aKFvnG---------kp~~iEa~ 81 (120)
T 2kvo_A 15 VPEVRLSKSKNGQ---SGMAKFYFLEPTILAKESTDDITGM-YLIDDEGEIITREVKGKFING---------RPTAIEAT 81 (120)
T ss_dssp CCEEEEEECTTSC---SEEEEEEEESCGGGTSSCGGGCCCE-EEECSSCEEEECCEEEEEETT---------EEEEEEEE
T ss_pred CCceEEEEcccCC---ccEEEEEECCchhccccccCcceeE-EEEccCccEEEEecceEEECC---------ceeEEEEE
Confidence 6789999987777 799999999876543321 122222 121111 34555554421 12345677
Q ss_pred ccCCCCchhHHHHHH
Q 029074 119 WLDPNDPDFEVAQRL 133 (199)
Q Consensus 119 ~~~~~~~~~~~~~~~ 133 (199)
++-.++.+|+..+|.
T Consensus 82 y~m~s~~~WdRFMRF 96 (120)
T 2kvo_A 82 VILNSQPEWDRFMRF 96 (120)
T ss_dssp EEECSSHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 777777778777663
No 232
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.21 E-value=90 Score=28.36 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHh----ccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 029074 24 NLSPQVTEPVIRTAL----DQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLH 81 (199)
Q Consensus 24 nLp~~vte~~L~~~F----~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ln 81 (199)
..+...+-.+|..+| +.+|-|+++.+-.-..-.. ..++++.|.+.++|..++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~--~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEY--QKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSE--EEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcc--ccccccccCCchhhhhhHHHHH
Confidence 445566666888888 3688899887654322222 5678999999999999887764
No 233
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.70 E-value=66 Score=21.35 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=25.2
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHHhCCC
Q 029074 44 VKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTSLHEF 83 (199)
Q Consensus 44 V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~lng~ 83 (199)
|.++.++. .. +||-||++...++...++....|.
T Consensus 40 i~~v~vP~----~f--PGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE----SL--KGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT----TS--TTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec----cc--CCEEEEEEecchhHHHHHHCCCCc
Confidence 55665543 23 999999999988888888766655
No 234
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.36 E-value=28 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=24.7
Q ss_pred EEecCCCCCCCHHHHHHHhccCCceEEEEEe
Q 029074 20 VYLDNLSPQVTEPVIRTALDQFGNVKNVQFI 50 (199)
Q Consensus 20 lfVgnLp~~vte~~L~~~F~~fG~V~~v~v~ 50 (199)
..|+|||+.++...|..++...+.+..+.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4899999999999999999876666554443
No 235
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.08 E-value=1.5e+02 Score=17.61 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEEEEeeCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIPHCALVEMENLKQAKDVVTS 79 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v~v~~d~tg~s~~~G~afVef~~~~~A~~Ai~~ 79 (199)
.++.|.++.-.--...+...+.. ..|..+.+-.. .+-+.|.|.+......+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-------CCEEEEEECCHHHHHHHHHH
Confidence 46889999888888999999999 78887776331 56778888755555566654
No 236
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.05 E-value=70 Score=25.21 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=22.8
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCceEEE
Q 029074 18 RTVYLDNLSPQVTEPVIRTALDQFGNVKNV 47 (199)
Q Consensus 18 rtlfVgnLp~~vte~~L~~~F~~fG~V~~v 47 (199)
.-+.|+|||+.++...+..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358899999999999998888754344443
Done!