BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029075
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 5 YYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRA 64
YY+IL V R+A DD+KKAYR+ A++WHPDKNP+NK+ AE KFK+++EAYEVLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 65 VYDQYGEEGLKG 76
+YD+YG EGL G
Sbjct: 64 IYDRYGREGLTG 75
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 58/68 (85%)
Query: 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQK 62
VDYY++L V R A + +KKAYRKLA+KWHPDKNP NK++AE +FKQ++EAYEVLSD +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 63 RAVYDQYG 70
R +YD+YG
Sbjct: 69 RDIYDRYG 76
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 59/68 (86%)
Query: 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQK 62
+YY++LGV +A +D+KKAYRKLA++WHPDKNP+NK++AE KFK +SEAYEVLSD +K
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 63 RAVYDQYG 70
R++YD+ G
Sbjct: 69 RSLYDRAG 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQ 61
G DYY+ LG+ R A D+++K+AYR+ A+++HPDKN + AE KFK+I+EAY+VLSDP+
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN--KEPGAEEKFKEIAEAYDVLSDPR 59
Query: 62 KRAVYDQYGEEGLKG 76
KR ++D+YGEEGLKG
Sbjct: 60 KREIFDRYGEEGLKG 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY+ILGV + A++ +++KAY++LAMK+HPD+N + K+AE KFK+I EAYEVL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYG 70
A YDQYG
Sbjct: 63 AAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY+ILGV + A++ +++KAY++LAMK+HPD+N + K+AE KFK+I EAYEVL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYG 70
A YDQYG
Sbjct: 63 AAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY+ILGV + A++ +++KAY++LAMK+HPD+N + K+AE KFK+I EAYEVL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYG 70
A YDQYG
Sbjct: 63 AAYDQYG 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Query: 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQ 61
G Y +LG+D+NA DD+KK+YRKLA+K+HPDKNP+N + A+ KFK+I+ A+ +L+D
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINNAHAILTDAT 74
Query: 62 KRAVYDQYGEEGL 74
KR +YD+YG GL
Sbjct: 75 KRNIYDKYGSLGL 87
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 5 YYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRA 64
YY +LGV +A D++LKKAYRK+A+K+HPDKNP D +FKQIS+AYEVLSD +KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNP----DGAEQFKQISQAYEVLSDEKKRQ 65
Query: 65 VYDQYGEE 72
+YDQ GEE
Sbjct: 66 IYDQGGEE 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 5 YYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRA 64
YY +LGV NA ++LKKAYRKLA+K+HPDKNPN + KFKQIS+AYEVLSD +KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 63
Query: 65 VYDQYGEE 72
+YD+ GE+
Sbjct: 64 LYDKGGEQ 71
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY+ILGV R A D+DLKKAYR+LA+K+HPDK N+ A FK I AY VLS+P+KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK--NHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 64 AVYDQYG 70
YDQ+G
Sbjct: 66 KQYDQFG 72
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
D Y++LGV R A D+KKAY+KLA +WHPDKN + AE +F QIS+AYE+LS+ +KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKR 75
Query: 64 AVYDQYG 70
YD YG
Sbjct: 76 TNYDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY+ILGV RNA ++KKAY +LA K+HPD N ++ K A+ KF Q++EAYEVLSD KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKR 66
Query: 64 AVYDQYG 70
YD YG
Sbjct: 67 KQYDAYG 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65
Y +LGV +A + +LKK YRK A+K+HPDK + + KFK+ISEA+E+L+DPQKR +
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQKREI 66
Query: 66 YDQYGEEGLK 75
YDQYG E +
Sbjct: 67 YDQYGLEAAR 76
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 5 YYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRA 64
YY ILGV ++A + +KKA+ KLAMK+HPDKN + DAE KF++I+EAYE LSD +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK 66
Query: 65 VYDQYGEEGL---KGQ 77
YD G KGQ
Sbjct: 67 EYDTLGHSAFTSGKGQ 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
++Y +LGV + A ++++A++KLA+K HPDKNPNN +A F +I+ AYEVL D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLR 80
Query: 64 AVYDQYGEEGLK 75
YD+YGE+GL+
Sbjct: 81 KKYDKYGEKGLE 92
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
++Y +LGV + A ++++A++KLA+K HPDKNPNN +A F +I+ AYEVL D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLR 61
Query: 64 AVYDQYGEEGLK 75
YD+YGE+GL+
Sbjct: 62 KKYDKYGEKGLE 73
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPD--KNPNNKKDAETKFKQISEAYEVLSDPQ 61
DYYKILGV RNAK ++ KAYRKLA++WHPD +N KK AE KF I+ A EVLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAVYD 67
R +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPD--KNPNNKKDAETKFKQISEAYEVLSDPQ 61
DYYKILGV RNAK ++ KAYRKLA++WHPD +N KK AE KF I+ A EVLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAVYD 67
R +D
Sbjct: 443 MRKKFD 448
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY ILGV +K AYR+LA K+HPD + N DAE KFK ++EA+EVL D Q+R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRR 86
Query: 64 AVYDQ 68
A YDQ
Sbjct: 87 AEYDQ 91
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY I+GV +K AYR+LA K+HPD + + DAE +FK+++EA+EVLSD Q+R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQRR 63
Query: 64 AVYDQ 68
A YDQ
Sbjct: 64 AEYDQ 68
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63
DYY +LG D + + + ++ A++ HPDK+P N K ET F+++ +A E+L++ + R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNEESR 79
Query: 64 AVYDQY 69
A YD +
Sbjct: 80 ARYDHW 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNN-----KKDAETKFKQISEAYEVLS 58
D+Y ILG D +A DLK+ Y+KL + +HPDK + ++ KF +I +A+++L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 59 DPQKRAVYD-QYGEEGLKGQMXXXXXXXXXXXSFFSTGEGPTSFRFNPRSA 108
+ + + YD Q E+ L+ S+ EG SF + R
Sbjct: 71 NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSW---NEGDHSFYLSCRCG 118
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65
Y +LGV A +K AY + +HPD+N + + AE +F +IS+AY VL R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSATLRRK 78
Query: 66 YDQ--YGEEGLKG 76
YD+ +E L+G
Sbjct: 79 YDRGLLSDEDLRG 91
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKN-----PNNKKDAETKFKQISEAYEVLS 58
D+Y ILG D +A DLK+ Y+KL + +HPDK ++ KF +I +A+++L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 59 DPQKRAVYD 67
+ + + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 6 YKILGVDRNAKDDD-LKKAYRKLAMKWHPD--KNPNNKKDAETKFKQISEAYEVLSDPQK 62
Y +L V+R D L KAYR LA K HPD KN K AE +F+ I+ AYE L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 63 RAVYDQY 69
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 17 DDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73
+ + KK R+L +KWHPDKNP N A FK + L +K+A DQ +
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNADRA 83
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVL 57
D + +LGV A D++ KAYRKLA+ HPDK +E FK + A L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV--APGSEDAFKAVVNARTAL 79
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 4 DYYKILGVDRNAKDDD--LKKAYRKLAMKWHPDK----NPNNKKDAETKFKQISEAYEVL 57
+Y+++ G+ + D L +R L ++HPD + ++ A + QI++AY+ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 58 SDPQKRAVY 66
DP +RA Y
Sbjct: 65 KDPLRRAEY 73
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 167 PPIENKLPCSLEDLYKGTTKKMKIS 191
PP+ + L SLE++Y G TKKMKIS
Sbjct: 12 PPVTHDLRVSLEEIYSGCTKKMKIS 36
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 167 PPIENKLPCSLEDLYKGTTKKMKIS 191
PP+ + L SLE++Y G TKKMKIS
Sbjct: 5 PPVTHDLRVSLEEIYSGCTKKMKIS 29
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 167 PPIENKLPCSLEDLYKGTTKKMKIS 191
PP+ + L SLE++Y G TKKMKIS
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKIS 27
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 20 LKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVY 66
L+K YR+L + HPD + + T +++AY L DP +R+ Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 20 LKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVY 66
L+K YR+L + HPD + + T +++AY L DP +R+ Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 69
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 169 IENKLPCSLEDLYKGTTKKMKISREI 194
I++++ SLE+LYKG T K+ ++++I
Sbjct: 14 IKHEISASLEELYKGRTAKLALNKQI 39
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 169 IENKLPCSLEDLYKGTTKKMKISRE 193
++ LP SLEDL+ G K KI R+
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK 27
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 169 IENKLPCSLEDLYKGTTKKMKISRE 193
++ LP SLEDL+ G K KI R+
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK 27
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 8 ILGVDRNAKDDD--LKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65
+LG++R+A + ++KAY K ++HPDK + E K K+++ Y+ + D K A
Sbjct: 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 70
Query: 66 YDQYG 70
+G
Sbjct: 71 QPDFG 75
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 8 ILGVDRNAKDDD--LKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65
+LG++R+A + ++KAY K ++HPDK + E K K+++ Y+ + D K A
Sbjct: 13 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 67
Query: 66 YDQYG 70
+G
Sbjct: 68 QPDFG 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,356,846
Number of Sequences: 62578
Number of extensions: 138513
Number of successful extensions: 360
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 47
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)