Query 029075
Match_columns 199
No_of_seqs 231 out of 2268
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.1E-40 2.5E-45 290.9 15.6 145 1-197 2-146 (371)
2 PRK14288 chaperone protein Dna 100.0 4.3E-34 9.3E-39 252.7 14.8 144 1-197 1-144 (369)
3 PRK14286 chaperone protein Dna 100.0 1.2E-33 2.5E-38 250.2 16.2 152 2-197 3-154 (372)
4 PRK14296 chaperone protein Dna 100.0 1.5E-33 3.2E-38 249.5 15.1 150 2-197 3-153 (372)
5 PRK14279 chaperone protein Dna 100.0 3E-33 6.5E-38 249.1 15.7 171 1-197 7-177 (392)
6 KOG0712 Molecular chaperone (D 100.0 1.6E-33 3.4E-38 243.2 11.9 129 2-197 3-131 (337)
7 PRK14285 chaperone protein Dna 100.0 6.5E-33 1.4E-37 244.9 16.1 150 1-197 1-150 (365)
8 PRK14277 chaperone protein Dna 100.0 2E-32 4.3E-37 243.5 17.1 156 2-197 4-159 (386)
9 PRK14287 chaperone protein Dna 100.0 1.7E-32 3.8E-37 242.7 15.6 140 2-197 3-142 (371)
10 PRK14276 chaperone protein Dna 100.0 1.8E-32 3.8E-37 243.4 15.2 148 2-197 3-150 (380)
11 PRK14297 chaperone protein Dna 100.0 3.8E-32 8.2E-37 241.3 15.9 149 2-197 3-152 (380)
12 PRK14291 chaperone protein Dna 100.0 5.5E-32 1.2E-36 240.3 16.5 160 1-197 1-160 (382)
13 PRK14282 chaperone protein Dna 100.0 4.2E-32 9.2E-37 240.1 15.6 153 2-197 3-156 (369)
14 PRK14281 chaperone protein Dna 100.0 1.1E-31 2.3E-36 239.5 17.7 164 1-197 1-167 (397)
15 PRK14278 chaperone protein Dna 100.0 7.2E-32 1.6E-36 239.3 15.7 143 1-197 1-143 (378)
16 PRK14280 chaperone protein Dna 100.0 8.9E-32 1.9E-36 238.6 15.5 144 3-197 4-147 (376)
17 PRK14298 chaperone protein Dna 100.0 7.8E-32 1.7E-36 238.9 15.1 142 2-197 4-145 (377)
18 PRK14295 chaperone protein Dna 100.0 1.4E-31 2.9E-36 238.3 15.6 160 1-197 7-170 (389)
19 PRK14294 chaperone protein Dna 100.0 1.7E-31 3.6E-36 236.1 15.3 145 3-197 4-148 (366)
20 PRK14301 chaperone protein Dna 100.0 1.7E-31 3.8E-36 236.4 15.3 146 2-197 3-148 (373)
21 PTZ00037 DnaJ_C chaperone prot 100.0 8.5E-32 1.8E-36 241.2 12.7 128 2-197 27-154 (421)
22 PRK14290 chaperone protein Dna 100.0 3.4E-31 7.4E-36 234.0 16.1 153 1-197 1-153 (365)
23 PRK14284 chaperone protein Dna 100.0 2.4E-31 5.3E-36 236.8 15.3 157 3-197 1-162 (391)
24 PRK10767 chaperone protein Dna 100.0 4.1E-31 8.9E-36 234.0 15.2 144 2-197 3-146 (371)
25 PRK14299 chaperone protein Dna 100.0 1.4E-30 3.1E-35 223.8 17.4 154 2-193 3-156 (291)
26 TIGR02349 DnaJ_bact chaperone 100.0 2E-30 4.4E-35 228.2 14.9 147 4-197 1-147 (354)
27 PRK14300 chaperone protein Dna 100.0 2.6E-30 5.6E-35 228.9 14.7 149 1-197 1-149 (372)
28 PRK14283 chaperone protein Dna 100.0 2.8E-30 6E-35 229.2 13.8 146 2-197 4-150 (378)
29 PRK14293 chaperone protein Dna 100.0 1.2E-29 2.6E-34 224.9 15.2 147 1-197 1-147 (374)
30 PRK14292 chaperone protein Dna 100.0 1.8E-29 3.8E-34 223.5 15.7 142 3-197 2-143 (371)
31 PRK14289 chaperone protein Dna 100.0 2.7E-29 5.8E-34 223.5 16.3 152 2-197 4-158 (386)
32 KOG0713 Molecular chaperone (D 100.0 4.5E-30 9.9E-35 219.8 8.6 133 2-187 15-147 (336)
33 PRK10266 curved DNA-binding pr 100.0 1.7E-28 3.6E-33 212.3 15.2 144 3-196 4-147 (306)
34 KOG0715 Molecular chaperone (D 99.9 5.6E-23 1.2E-27 176.3 10.1 125 4-197 44-168 (288)
35 KOG0716 Molecular chaperone (D 99.9 4.6E-22 9.9E-27 166.0 5.5 73 2-75 30-102 (279)
36 KOG0714 Molecular chaperone (D 99.8 5.7E-20 1.2E-24 154.9 13.6 185 1-198 1-191 (306)
37 KOG0718 Molecular chaperone (D 99.8 5.7E-21 1.2E-25 169.2 5.9 75 3-77 9-85 (546)
38 KOG0717 Molecular chaperone (D 99.8 6.7E-21 1.5E-25 168.5 6.2 77 1-77 6-82 (508)
39 KOG0691 Molecular chaperone (D 99.8 1.1E-20 2.4E-25 161.7 6.6 72 2-74 4-75 (296)
40 PF00226 DnaJ: DnaJ domain; I 99.8 1.5E-20 3.2E-25 126.4 5.3 64 4-67 1-64 (64)
41 PTZ00341 Ring-infected erythro 99.8 9.2E-20 2E-24 173.4 7.6 72 2-75 572-643 (1136)
42 KOG0719 Molecular chaperone (D 99.8 2.7E-19 5.8E-24 146.6 5.6 71 1-71 12-83 (264)
43 smart00271 DnaJ DnaJ molecular 99.7 2.6E-18 5.6E-23 113.8 6.4 60 3-62 1-60 (60)
44 KOG0721 Molecular chaperone (D 99.7 4.1E-18 8.9E-23 138.4 6.5 70 2-72 98-167 (230)
45 TIGR03835 termin_org_DnaJ term 99.7 8.2E-18 1.8E-22 157.1 8.9 70 3-74 2-71 (871)
46 KOG0624 dsRNA-activated protei 99.7 6.2E-18 1.3E-22 146.3 6.9 74 3-77 394-469 (504)
47 COG2214 CbpA DnaJ-class molecu 99.7 7.1E-18 1.5E-22 136.0 6.7 70 1-70 4-73 (237)
48 cd06257 DnaJ DnaJ domain or J- 99.7 1.1E-17 2.4E-22 108.7 6.4 55 4-59 1-55 (55)
49 PHA03102 Small T antigen; Revi 99.7 9.6E-18 2.1E-22 131.2 6.3 65 4-73 6-72 (153)
50 PRK05014 hscB co-chaperone Hsc 99.6 9.1E-16 2E-20 122.6 7.0 66 3-68 1-72 (171)
51 PRK01356 hscB co-chaperone Hsc 99.6 2.8E-15 6.1E-20 119.2 7.0 67 3-69 2-72 (166)
52 KOG0550 Molecular chaperone (D 99.6 2.1E-15 4.7E-20 132.8 4.3 66 3-68 373-438 (486)
53 PRK00294 hscB co-chaperone Hsc 99.5 1.3E-14 2.9E-19 116.0 7.4 68 2-69 3-76 (173)
54 PRK03578 hscB co-chaperone Hsc 99.5 1.2E-14 2.6E-19 116.6 7.1 67 2-68 5-77 (176)
55 KOG0722 Molecular chaperone (D 99.5 7.7E-15 1.7E-19 122.0 3.8 65 3-69 33-97 (329)
56 KOG0720 Molecular chaperone (D 99.5 1.3E-14 2.7E-19 128.9 5.4 66 2-69 234-299 (490)
57 PTZ00100 DnaJ chaperone protei 99.4 1.1E-13 2.3E-18 103.4 4.1 51 3-58 65-115 (116)
58 PRK09430 djlA Dna-J like membr 99.4 1.3E-13 2.8E-18 117.4 4.4 57 3-59 200-262 (267)
59 COG5407 SEC63 Preprotein trans 99.4 3E-13 6.5E-18 120.1 5.5 74 2-75 97-174 (610)
60 PHA02624 large T antigen; Prov 99.3 7.1E-13 1.5E-17 122.7 4.3 60 3-67 11-72 (647)
61 KOG1150 Predicted molecular ch 99.3 4.2E-12 9.1E-17 102.4 5.0 64 2-65 52-115 (250)
62 PRK01773 hscB co-chaperone Hsc 99.3 1.1E-11 2.3E-16 99.3 7.1 66 3-68 2-73 (173)
63 TIGR00714 hscB Fe-S protein as 99.1 1.4E-10 3E-15 91.6 6.7 56 15-70 3-62 (157)
64 COG5269 ZUO1 Ribosome-associat 99.0 4.1E-10 8.8E-15 94.8 3.7 68 3-70 43-114 (379)
65 KOG1789 Endocytosis protein RM 98.5 8.8E-08 1.9E-12 92.8 4.7 51 4-58 1282-1336(2235)
66 KOG0568 Molecular chaperone (D 98.4 2.9E-07 6.2E-12 76.3 3.3 55 3-59 47-102 (342)
67 KOG0723 Molecular chaperone (D 98.3 1.3E-06 2.7E-11 64.0 4.5 49 7-60 60-108 (112)
68 KOG3192 Mitochondrial J-type c 97.4 0.00014 3E-09 56.9 3.7 66 3-68 8-79 (168)
69 KOG0431 Auxilin-like protein a 97.3 0.00028 6.1E-09 64.5 4.7 51 6-56 391-447 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.2 0.00023 5E-09 57.0 2.2 55 3-57 113-173 (174)
71 TIGR03835 termin_org_DnaJ term 96.8 0.0011 2.4E-08 63.6 4.0 34 165-198 655-688 (871)
72 COG1076 DjlA DnaJ-domain-conta 96.4 0.0026 5.6E-08 50.9 2.6 66 4-69 2-73 (174)
73 PF03656 Pam16: Pam16; InterP 95.4 0.025 5.4E-07 43.1 4.1 51 6-61 61-111 (127)
74 PF13446 RPT: A repeated domai 94.1 0.13 2.8E-06 33.9 4.7 25 5-29 7-31 (62)
75 KOG0724 Zuotin and related mol 90.2 0.28 6.1E-06 42.9 3.2 56 14-69 3-61 (335)
76 PF14687 DUF4460: Domain of un 89.1 0.62 1.3E-05 34.7 3.9 48 13-60 4-54 (112)
77 PF01556 CTDII: DnaJ C termina 88.4 0.47 1E-05 32.8 2.7 22 168-189 1-22 (81)
78 PRK14291 chaperone protein Dna 86.8 0.72 1.6E-05 41.3 3.6 28 163-190 271-298 (382)
79 PRK14284 chaperone protein Dna 85.3 0.87 1.9E-05 41.0 3.3 27 163-189 274-300 (391)
80 PRK14282 chaperone protein Dna 82.8 1.3 2.9E-05 39.4 3.4 28 163-190 272-299 (369)
81 PRK14299 chaperone protein Dna 80.2 1.5 3.4E-05 37.7 2.8 28 163-190 197-224 (291)
82 TIGR02349 DnaJ_bact chaperone 79.1 2 4.3E-05 38.0 3.2 27 163-189 263-289 (354)
83 PRK10266 curved DNA-binding pr 78.4 2 4.4E-05 37.2 3.0 27 164-190 206-232 (306)
84 PRK14279 chaperone protein Dna 77.1 2.4 5.2E-05 38.2 3.2 28 163-190 289-316 (392)
85 PRK14295 chaperone protein Dna 77.1 2.7 5.7E-05 37.9 3.4 27 163-189 282-308 (389)
86 PRK14276 chaperone protein Dna 76.9 2.5 5.5E-05 37.8 3.3 28 163-190 266-293 (380)
87 PRK14300 chaperone protein Dna 76.5 2.6 5.7E-05 37.6 3.2 28 163-190 261-288 (372)
88 PRK14294 chaperone protein Dna 76.4 3.1 6.7E-05 37.1 3.7 27 163-189 260-286 (366)
89 PRK14287 chaperone protein Dna 76.4 2.7 6E-05 37.5 3.3 28 163-190 258-285 (371)
90 PRK14280 chaperone protein Dna 76.2 2.7 5.9E-05 37.6 3.2 27 163-189 263-289 (376)
91 COG5552 Uncharacterized conser 75.5 13 0.00027 25.8 5.6 37 1-37 1-37 (88)
92 PRK14290 chaperone protein Dna 75.3 3 6.6E-05 37.1 3.3 27 164-190 267-293 (365)
93 PRK14298 chaperone protein Dna 75.0 2.9 6.4E-05 37.4 3.1 26 164-189 262-287 (377)
94 PRK14281 chaperone protein Dna 74.9 3.1 6.8E-05 37.5 3.3 28 163-190 282-309 (397)
95 PRK14297 chaperone protein Dna 74.6 3 6.6E-05 37.3 3.1 27 164-190 269-295 (380)
96 PRK14286 chaperone protein Dna 74.2 3.5 7.5E-05 36.8 3.4 27 163-189 266-292 (372)
97 PRK10767 chaperone protein Dna 73.7 3.5 7.6E-05 36.7 3.3 26 164-189 259-284 (371)
98 PRK14278 chaperone protein Dna 73.1 3.8 8.2E-05 36.7 3.4 27 163-189 259-285 (378)
99 PF11833 DUF3353: Protein of u 73.1 4.5 9.7E-05 33.0 3.5 38 12-58 1-38 (194)
100 PRK14301 chaperone protein Dna 71.8 4.4 9.5E-05 36.2 3.5 27 163-189 260-286 (373)
101 PRK14277 chaperone protein Dna 70.7 4.5 9.8E-05 36.3 3.3 26 164-189 276-301 (386)
102 PRK14285 chaperone protein Dna 70.4 4.4 9.6E-05 36.1 3.2 28 163-190 262-289 (365)
103 PRK14283 chaperone protein Dna 69.5 4.8 0.0001 36.0 3.2 26 164-189 267-292 (378)
104 PRK14288 chaperone protein Dna 68.2 5 0.00011 35.8 3.0 27 163-189 254-280 (369)
105 PRK14292 chaperone protein Dna 67.5 5.3 0.00011 35.6 3.0 27 163-189 258-284 (371)
106 PRK14289 chaperone protein Dna 66.6 5.6 0.00012 35.6 3.0 28 163-190 274-301 (386)
107 PTZ00037 DnaJ_C chaperone prot 60.7 7.7 0.00017 35.4 2.8 27 163-189 270-296 (421)
108 cd00084 HMG-box High Mobility 59.9 31 0.00068 21.7 5.0 42 21-68 12-53 (66)
109 KOG3442 Uncharacterized conser 59.0 12 0.00026 28.4 3.1 32 6-37 62-93 (132)
110 PRK14296 chaperone protein Dna 58.1 11 0.00025 33.6 3.5 24 166-189 273-296 (372)
111 PRK14293 chaperone protein Dna 57.6 8.6 0.00019 34.3 2.6 28 163-190 263-290 (374)
112 PF12434 Malate_DH: Malate deh 56.8 13 0.00029 20.5 2.2 18 16-33 9-26 (28)
113 cd01388 SOX-TCF_HMG-box SOX-TC 56.1 33 0.00072 22.7 4.8 41 22-68 14-54 (72)
114 PF07709 SRR: Seven Residue Re 55.9 6.9 0.00015 18.1 0.9 13 46-58 2-14 (14)
115 cd01390 HMGB-UBF_HMG-box HMGB- 53.9 41 0.00089 21.3 4.8 40 24-69 15-54 (66)
116 PF10041 DUF2277: Uncharacteri 52.2 69 0.0015 22.2 5.7 37 1-37 1-37 (78)
117 cd01389 MATA_HMG-box MATA_HMG- 50.3 49 0.0011 22.1 4.9 42 21-68 13-54 (77)
118 PF07739 TipAS: TipAS antibiot 48.8 39 0.00084 24.2 4.5 51 10-70 51-103 (118)
119 KOG0527 HMG-box transcription 45.0 28 0.0006 30.8 3.7 41 22-68 75-115 (331)
120 PF00505 HMG_box: HMG (high mo 41.2 66 0.0014 20.5 4.3 42 21-68 12-53 (69)
121 smart00441 FF Contains two con 37.5 99 0.0022 19.0 4.9 50 19-69 2-52 (55)
122 COG2879 Uncharacterized small 37.3 57 0.0012 21.8 3.3 26 24-52 28-53 (65)
123 PF01846 FF: FF domain; Inter 37.2 52 0.0011 20.1 3.1 48 19-69 1-51 (51)
124 smart00398 HMG high mobility g 36.5 1.1E+02 0.0024 19.3 5.0 42 22-69 14-55 (70)
125 KOG3960 Myogenic helix-loop-he 33.1 28 0.00061 29.7 1.7 13 45-57 128-140 (284)
126 PF02216 B: B domain; InterPr 30.0 81 0.0017 20.3 3.0 29 5-36 13-41 (54)
127 PF12725 DUF3810: Protein of u 26.6 44 0.00095 29.3 1.9 56 4-59 83-148 (318)
128 COG0089 RplW Ribosomal protein 25.2 56 0.0012 23.6 1.9 20 8-27 25-44 (94)
129 PF00076 RRM_1: RNA recognitio 24.7 52 0.0011 20.5 1.6 22 8-29 3-24 (70)
130 cd07356 HN_L-whirlin_R1_like F 23.9 1.7E+02 0.0036 20.3 3.9 40 22-70 22-61 (78)
131 PTZ00199 high mobility group p 23.8 1.7E+02 0.0038 20.5 4.3 41 24-68 37-77 (94)
132 PF15178 TOM_sub5: Mitochondri 23.6 1.3E+02 0.0028 18.9 3.1 24 6-29 2-25 (51)
133 CHL00030 rpl23 ribosomal prote 22.8 68 0.0015 23.0 2.0 19 9-27 24-42 (93)
134 cd01780 PLC_epsilon_RA Ubiquit 22.7 83 0.0018 22.6 2.4 33 4-36 12-44 (93)
135 PF04967 HTH_10: HTH DNA bindi 22.1 38 0.00082 21.7 0.5 21 8-28 32-52 (53)
136 PRK13798 putative OHCU decarbo 21.9 3.2E+02 0.0069 21.6 5.9 24 13-36 41-75 (166)
137 PF04949 Transcrip_act: Transc 21.9 1E+02 0.0022 24.2 2.9 25 41-65 62-86 (159)
138 COG3755 Uncharacterized protei 21.4 1.3E+02 0.0028 22.9 3.3 41 16-64 49-90 (127)
139 KOG0724 Zuotin and related mol 21.1 47 0.001 28.8 1.1 51 14-69 36-86 (335)
140 PF03820 Mtc: Tricarboxylate c 20.9 1.7E+02 0.0036 25.7 4.4 53 11-63 44-121 (308)
141 TIGR03180 UraD_2 OHCU decarbox 20.2 3.7E+02 0.0079 21.0 5.9 24 13-36 31-65 (158)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=290.88 Aligned_cols=145 Identities=46% Similarity=0.801 Sum_probs=117.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++||.+||||||||||++||||+|+.+ ++|+++|++|+|||+|||||+||++||+||+.+++.+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g--- 77 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG--- 77 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC---
Confidence 568999999999999999999999999999999999864 6899999999999999999999999999999887621
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
+++++ +|+ .|.. ++.|||++|||+ + +++.. ++
T Consensus 78 ----g~gg~-g~~--------~fgg-~~~DIF~~~FgG-----g------~~~~~-----------------------~~ 109 (371)
T COG0484 78 ----GFGGF-GFG--------GFGG-DFGDIFEDFFGG-----G------GGGRR-----------------------RP 109 (371)
T ss_pred ----CcCCC-CcC--------CCCC-CHHHHHHHhhcC-----C------CcccC-----------------------CC
Confidence 11111 111 1111 578999999971 1 00000 01
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+++++.||.+.|+|||||||+|++++|+|++.+.|.
T Consensus 110 ~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~ 146 (371)
T COG0484 110 NRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCS 146 (371)
T ss_pred CCcccCCceEEEEEeEhhhhccCceeeEecceeeECC
Confidence 3367999999999999999999999999999999885
No 2
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-34 Score=252.75 Aligned_cols=144 Identities=42% Similarity=0.716 Sum_probs=109.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|+.|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+||++++....
T Consensus 1 ~~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~-- 77 (369)
T PRK14288 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG-- 77 (369)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCC--
Confidence 789999999999999999999999999999999999854 46899999999999999999999999999987654210
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
+ +...|. .+ | .++.++|..|||+ + + .+. + .
T Consensus 78 ----~--~~~~~~------~~-f--~~~~~~F~~~fg~-----g------~-~~~-------~----------------~ 107 (369)
T PRK14288 78 ----A--SQSDFS------DF-F--EDLGSFFEDAFGF-----G------A-RGS-------K----------------R 107 (369)
T ss_pred ----C--Cccccc------cc-h--hhHHHHHHhhcCC-----C------C-ccc-------C----------------c
Confidence 0 000010 00 1 1334556655541 0 0 000 0 0
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.++++++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 108 ~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~ 144 (369)
T PRK14288 108 QKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCE 144 (369)
T ss_pred CCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCC
Confidence 1235789999999999999999999999999998884
No 3
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-33 Score=250.23 Aligned_cols=152 Identities=44% Similarity=0.754 Sum_probs=113.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|++||+||++++..+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~-- 79 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAG-- 79 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccC--
Confidence 37999999999999999999999999999999999754 578999999999999999999999999999987653210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
++++ +++. .. ...| .+++|+|+.||++. + + + +.. + . ...
T Consensus 80 ---~~~~-~~~~--~~--~~~~--~~~~d~f~~ffgg~----~--~---~--~~~------~----------~----~~~ 118 (372)
T PRK14286 80 ---GFGQ-GAYT--DF--SDIF--GDFGDIFGDFFGGG----R--G---G--GSG------G----------G----RRS 118 (372)
T ss_pred ---CCCC-CCcc--cc--cccc--cchhhHHHHhhCCC----c--c---C--CCc------c----------c----ccC
Confidence 0000 0010 00 0001 25679999999821 0 0 0 000 0 0 001
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+.+++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 119 ~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~ 154 (372)
T PRK14286 119 GPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCV 154 (372)
T ss_pred CCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCC
Confidence 235789999999999999999999999999999885
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-33 Score=249.53 Aligned_cols=150 Identities=31% Similarity=0.523 Sum_probs=110.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||++|+.||+||+++++... +
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~--~ 78 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS--G 78 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC--C
Confidence 3799999999999999999999999999999999974 57899999999999999999999999999988765321 0
Q ss_pred CCCCCCCCC-CCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGAS-FFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 82 ~~~~~g~~~-~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
..++++++. .|...+. ..+ .++.|+|+.||++ + .+. .
T Consensus 79 ~~~~~~~~~~~~~~~~~---~g~--~~f~d~f~~~fgg-----g--------~~~------------------------~ 116 (372)
T PRK14296 79 FSSNFGDFEDLFSNMGS---SGF--SSFTNIFSDFFGS-----N--------KSD------------------------Y 116 (372)
T ss_pred cCcCCCccccccccccc---ccc--ccchhhhhhhcCC-----C--------ccC------------------------C
Confidence 000110000 0000000 001 1345677777651 0 000 0
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.++.+++||++.|.|||||+|+||+++|++++.++|.
T Consensus 117 ~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~ 153 (372)
T PRK14296 117 QRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCS 153 (372)
T ss_pred CCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccC
Confidence 1235789999999999999999999999999998885
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-33 Score=249.09 Aligned_cols=171 Identities=35% Similarity=0.496 Sum_probs=107.6
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||++|++||+||+++.......
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~ 85 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG 85 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence 458999999999999999999999999999999999854 5789999999999999999999999999997543211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
....+.++.++|..+.. .. ..+++++|...+++. + . .+..+|+ ++|++ +++ ....
T Consensus 86 ~~~~~~~~~~g~~~~~~----~~-~~d~~~~f~~~~~~~--~----------~---~f~d~f~-~~fg~---~~~-~~~~ 140 (392)
T PRK14279 86 RRFDGGGGFGGFGTGGD----GA-EFNLNDLFDAAGRGG--G----------G---GIGDLFG-GLFNR---GGG-SARP 140 (392)
T ss_pred ccccCCCCCCCcccccc----cc-CcChhhhhccccccc--c----------c---chhhhhh-hhhcC---CCc-cccc
Confidence 00000000001110000 00 012223322111100 0 0 0001111 01110 000 0001
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+++++||+++|.|||||+|+||+++|++++.++|.
T Consensus 141 ~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~ 177 (392)
T PRK14279 141 SRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCT 177 (392)
T ss_pred CCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCC
Confidence 2245789999999999999999999999999998875
No 6
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=243.19 Aligned_cols=129 Identities=53% Similarity=0.972 Sum_probs=106.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
+..||+||+|+++|+.+|||||||+||++|||||||. +.++|++|++||+|||||++|++||+||+++++.+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~--- 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG--- 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC---
Confidence 4689999999999999999999999999999999974 778999999999999999999999999999885431
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
+++ .+. . |++||+ |++ .+. .
T Consensus 76 ----~~~-------------g~~--~----f~~~F~----~g~--------~~~-------------------------~ 95 (337)
T KOG0712|consen 76 ----GGG-------------GFG--G----FSQFFG----FGG--------NGG-------------------------R 95 (337)
T ss_pred ----CCC-------------CCc--c----HHHhcc----CCC--------cCc-------------------------c
Confidence 000 010 1 788887 221 011 1
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+.+++||.|.|+|||||+|.|.++++.|+++++|.
T Consensus 96 ~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs 131 (337)
T KOG0712|consen 96 GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICS 131 (337)
T ss_pred ccccCCCceEEEEEEHHHhhcCCccceecccCccCC
Confidence 123499999999999999999999999999999986
No 7
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.5e-33 Score=244.91 Aligned_cols=150 Identities=41% Similarity=0.636 Sum_probs=114.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+|+.+|..||+||+++++.+.
T Consensus 1 m~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~-- 77 (365)
T PRK14285 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG-- 77 (365)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC--
Confidence 678999999999999999999999999999999999854 57889999999999999999999999999988764321
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
+ .+++. +++. .+.....+++|+|+.||++. . + +.+ .
T Consensus 78 ~-~~~~~--~g~~------~~~~~~~~~~d~f~~~fgg~----~------~--~~~-----------------------~ 113 (365)
T PRK14285 78 G-FEGFS--GGFS------GFSDIFEDFGDIFDSFFTGN----R------G--QDK-----------------------N 113 (365)
T ss_pred C-ccccC--CCcc------ccccccccHHHHHHHhhcCC----c------C--CCC-----------------------C
Confidence 0 00000 0010 01100125679999998721 0 0 000 0
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.+++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 114 ~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~ 150 (365)
T PRK14285 114 RKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCE 150 (365)
T ss_pred cCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCC
Confidence 1135789999999999999999999999999999875
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-32 Score=243.49 Aligned_cols=156 Identities=46% Similarity=0.732 Sum_probs=114.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|+.||+||+++++......
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQ 82 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccccc
Confidence 47999999999999999999999999999999999854 57889999999999999999999999999988765321100
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
++.+ ..++.. + .+.+...++.|+|++||+.. |++ + +.+ . ..
T Consensus 83 --~~~~-~~g~~~--~--~~~~~~~~~~d~f~~~F~~~--fgg------~--~~~------~----------------~~ 123 (386)
T PRK14277 83 --GGFG-QGGFGG--G--GFDFDFGGFGDIFEDIFGDF--FGT------G--RRR------A----------------ET 123 (386)
T ss_pred --CCcC-CCCccc--c--CccccccchhHHHHHhhccc--ccC------C--CcC------C----------------CC
Confidence 0000 001110 0 11111124568899998721 111 0 000 0 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+.+++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 124 ~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~ 159 (386)
T PRK14277 124 GPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD 159 (386)
T ss_pred CCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence 235789999999999999999999999999999885
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-32 Score=242.67 Aligned_cols=140 Identities=45% Similarity=0.741 Sum_probs=111.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+. ++|+++|++|++||++|+||++|++||+||++++....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~--- 77 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF--- 77 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc---
Confidence 3699999999999999999999999999999999973 57889999999999999999999999999987764210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
++ ++ + . .| .+++|+|+.||++. + + .+ . ..
T Consensus 78 --~~-~~---~------~--~f--~~~~d~f~~~fgg~----~------~---~~------~----------------~~ 106 (371)
T PRK14287 78 --GG-GG---A------G--DF--GGFSDIFDMFFGGG----G------G---RR------N----------------PN 106 (371)
T ss_pred --CC-CC---C------c--cc--cchHHHHHhhhccc----c------C---CC------C----------------CC
Confidence 00 00 0 0 11 13568999998721 0 0 00 0 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+.+++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 107 ~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~ 142 (371)
T PRK14287 107 APRQGADLQYTMTLEFKEAVFGKETEIEIPREETCG 142 (371)
T ss_pred CCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCC
Confidence 235789999999999999999999999999999885
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-32 Score=243.35 Aligned_cols=148 Identities=41% Similarity=0.696 Sum_probs=112.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|++||+||++++.+.....
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~ 80 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGG 80 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCC
Confidence 3799999999999999999999999999999999974 46889999999999999999999999999998765321000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
.+ +..+|.... .| .++.|+|+.|||++ + +.+ . ..
T Consensus 81 -~~---~~~~~~~~~-----~~--~~~~d~f~~~fgg~----~---------~~~------~----------------~~ 114 (380)
T PRK14276 81 -AG---GFGGFDGSG-----GF--GGFEDIFSSFFGGG----G---------ARR------N----------------PN 114 (380)
T ss_pred -CC---CCCCccccc-----cc--cchhhHHHHHhCcc----c---------ccc------C----------------cC
Confidence 00 000111000 11 24678999998721 0 000 0 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+++++||+++|.|||||+|+||+++|+++|.+.|.
T Consensus 115 ~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~ 150 (380)
T PRK14276 115 APRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCH 150 (380)
T ss_pred CCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCC
Confidence 235789999999999999999999999999998875
No 11
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-32 Score=241.26 Aligned_cols=149 Identities=44% Similarity=0.779 Sum_probs=113.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|++||+||++++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~--- 78 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG--- 78 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC---
Confidence 47999999999999999999999999999999999854 57899999999999999999999999999988764210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCC-CChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNP-RSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~-~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
++++ ++|. .+.+.. .+++|+|++||++ +++ + .+.+ .
T Consensus 79 ---~~~~-~~~~------~~~~~~~~~~~d~f~~~fgg-----~~g----~-~~~~-----------------------~ 115 (380)
T PRK14297 79 ---GFGS-GGFG------GFDFSDMGGFGDIFDSFFGG-----GFG----S-SSRR-----------------------R 115 (380)
T ss_pred ---CCCC-CCCC------CcCcccccchhHHHHHHhcc-----Ccc----c-cccc-----------------------c
Confidence 0000 0111 011111 2467999999982 100 0 0000 0
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+++++||+++|.|||||+|+||+++|+++|.+.|.
T Consensus 116 ~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 152 (380)
T PRK14297 116 NGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCE 152 (380)
T ss_pred CCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCC
Confidence 1235789999999999999999999999999999885
No 12
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-32 Score=240.34 Aligned_cols=160 Identities=40% Similarity=0.641 Sum_probs=114.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|++||+||+.++......
T Consensus 1 ~~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~ 78 (382)
T PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQ 78 (382)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCc
Confidence 67899999999999999999999999999999999974 5788999999999999999999999999998766432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
..+..+|. . +...++.|+|.+||+.. .|+.+ +++.. + .... ....
T Consensus 79 -----~~~~~~~~------~--~~~~~~~d~f~~~f~~f-g~~~~------fg~~~------~-------~~~~--~~~~ 123 (382)
T PRK14291 79 -----QQGQEGFS------D--FGGGNIEDILEDVFDIF-GFGDI------FGRRR------A-------TRER--RKTY 123 (382)
T ss_pred -----cccccccc------c--ccCCCHHHHHHHHHHhc-ccccc------ccccc------c-------cccc--cccc
Confidence 00000111 0 11235678999986511 01110 00000 0 0000 0001
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.+++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 124 ~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 124 QRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred ccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 2235789999999999999999999999999999885
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=4.2e-32 Score=240.10 Aligned_cols=153 Identities=42% Similarity=0.726 Sum_probs=111.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+.+..+|+++|++|++||+||+||.+|+.||+||++++.....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~-- 80 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ-- 80 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc--
Confidence 479999999999999999999999999999999998654578999999999999999999999999999876542100
Q ss_pred CCCCCCCCCCCCCCCCCCCc-cCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSF-RFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~-~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
...+.++ .+. . .| .|......|+|+.|||+. + + +.. ..
T Consensus 81 ~~~~~g~--~~~--~---~~~~~~~~~~~d~f~~~fgg~----~------~-~~~-----------------------~~ 119 (369)
T PRK14282 81 ETESGGG--FFE--D---IFKDFENIFNRDIFDIFFGER----R------T-QEE-----------------------QR 119 (369)
T ss_pred cCCCCCc--ccc--c---ccccccccccchhhhHhhccc----C------C-ccc-----------------------cc
Confidence 0000000 000 0 00 111001136788777621 0 0 000 00
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+++++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 120 ~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~ 156 (369)
T PRK14282 120 EYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCP 156 (369)
T ss_pred CCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCC
Confidence 1235789999999999999999999999999999885
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=1.1e-31 Score=239.49 Aligned_cols=164 Identities=39% Similarity=0.663 Sum_probs=112.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|..|||+||||+++|+.+|||+|||+||++||||+++.+ ++|+++|++|++||++|+|+.+|+.||+||+++++.....
T Consensus 1 ~~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~ 79 (397)
T PRK14281 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAAS 79 (397)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhcccccc
Confidence 678999999999999999999999999999999999754 5688999999999999999999999999998876532110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHH---HHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIF---AEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGS 157 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f---~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (199)
.. ..+|.. . . .+++++| ++||++...+++ .....+..+++ + +...
T Consensus 80 ~~------~~~~~~-~---~-----~~~~d~f~~f~~~Fgg~~~~~~--------~~~~~~~~~~~-----g----~~~~ 127 (397)
T PRK14281 80 GG------GPGYGG-G---G-----GDFNDIFSAFNDMFGGGARRGG--------GSPFGFEDVFG-----G----GGRR 127 (397)
T ss_pred CC------CCCCCc-C---C-----CCHHHHHHHHHHHhCCCccccc--------ccccccccccC-----C----Cccc
Confidence 00 000110 0 0 1234555 477873211100 00000000011 0 0000
Q ss_pred CCCCCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 158 MGGGGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 158 ~~~~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.....+.+++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 128 ~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~ 167 (397)
T PRK14281 128 RRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCK 167 (397)
T ss_pred ccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCC
Confidence 0001124789999999999999999999999999999885
No 15
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=7.2e-32 Score=239.26 Aligned_cols=143 Identities=40% Similarity=0.616 Sum_probs=111.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+|++ ++|+++|++|++||+||+||.+|++||+||++.....
T Consensus 1 m~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~--- 75 (378)
T PRK14278 1 MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG--- 75 (378)
T ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc---
Confidence 77899999999999999999999999999999999973 5789999999999999999999999999997532110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
+. .++|. ..| .+++|+|+.||++. + + +.. ..
T Consensus 76 ---~~---~~g~~-------~~f--~~~~d~f~~ffgg~----g------~--~~~----------------------~~ 106 (378)
T PRK14278 76 ---GG---GGGFG-------GGF--GGLGDVFEAFFGGG----A------A--SRG----------------------PR 106 (378)
T ss_pred ---CC---CCCCC-------cCc--CchhHHHHHHhCCC----C------C--CCC----------------------Cc
Confidence 00 00011 012 13578999998721 0 0 000 00
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+++++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 107 ~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~ 143 (378)
T PRK14278 107 GRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCD 143 (378)
T ss_pred cCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCC
Confidence 1235789999999999999999999999999998885
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=8.9e-32 Score=238.55 Aligned_cols=144 Identities=44% Similarity=0.726 Sum_probs=111.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
.|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|++||+||++++..+...
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~-- 79 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGG-- 79 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCC--
Confidence 799999999999999999999999999999999974 4688999999999999999999999999998876532100
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGG 162 (199)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
+++++ ..|. . .| +++|+|+.|||+. + .+.. ...
T Consensus 80 -~~~~~-~~~~-----~--~~---~~~d~f~~~fgg~-----------~-~~~~-----------------------~~~ 112 (376)
T PRK14280 80 -GGFGG-GDFG-----G--GF---GFEDIFSSFFGGG-----------G-RRRD-----------------------PNA 112 (376)
T ss_pred -CCCCC-CCcc-----c--cc---cchhhHHHHhCCc-----------c-ccCc-----------------------ccc
Confidence 00000 0010 0 11 3568999998721 0 0000 012
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
+++++||+++|.|||||+|+||+++|+++|.+.|.
T Consensus 113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~ 147 (376)
T PRK14280 113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCD 147 (376)
T ss_pred cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCC
Confidence 35789999999999999999999999999999885
No 17
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=7.8e-32 Score=238.93 Aligned_cols=142 Identities=45% Similarity=0.727 Sum_probs=111.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||+||+||.+|+.||+||+++++....
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~-- 79 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYS-- 79 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccC--
Confidence 3799999999999999999999999999999999973 568899999999999999999999999999876643210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
+...|.. . .| .++.|+|+.|||+ + + +.+ ..
T Consensus 80 ------~~~~~~~-~-----~~--~~~~d~f~~~Fgg-----~------~--~~~-----------------------~~ 109 (377)
T PRK14298 80 ------AEDIFRG-A-----DF--GGFGDIFEMFFGG-----G------G--RRG-----------------------RM 109 (377)
T ss_pred ------ccccccc-C-----Cc--CcchhhhHhhhcC-----C------C--ccC-----------------------CC
Confidence 0000110 0 11 1346889999872 1 0 000 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
++++++||+++|.|||||+|+||+++|++++.+.|.
T Consensus 110 ~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~ 145 (377)
T PRK14298 110 GPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCS 145 (377)
T ss_pred CCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCC
Confidence 135789999999999999999999999999999885
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.4e-31 Score=238.26 Aligned_cols=160 Identities=38% Similarity=0.679 Sum_probs=109.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh----hccccccC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ----YGEEGLKG 76 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~----~g~~~~~~ 76 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|++||+ ||++++..
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~ 85 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRP 85 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccccc
Confidence 567999999999999999999999999999999999754 5789999999999999999999999999 88876642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 029075 77 QMPPPDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGG 156 (199)
Q Consensus 77 ~~~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (199)
.. ..+ +. ..|.| ++.++|..+++. ++++ ++.+ .+..+|+ ++|++ + +
T Consensus 86 ~~---~~~---~~---------~~~~~---~~~~~f~~~~~~----~~~~----~~~~--~f~d~f~-~~fg~---~-~- 131 (389)
T PRK14295 86 GP---GGG---GG---------GGFNF---DLGDLFGGGAQG----GGGA----GGGG--GLGDVFG-GLFNR---G-G- 131 (389)
T ss_pred CC---CCC---CC---------CCCCc---cccccccccccc----cccc----cccc--chhhhhc-ccccC---C-C-
Confidence 10 000 00 01112 223444332210 0000 0000 0111122 11110 0 0
Q ss_pred CCCCCCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 157 SMGGGGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 157 ~~~~~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
....+++++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 132 --~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~ 170 (389)
T PRK14295 132 --RRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCP 170 (389)
T ss_pred --CCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCC
Confidence 012245789999999999999999999999999998885
No 19
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.7e-31 Score=236.08 Aligned_cols=145 Identities=50% Similarity=0.847 Sum_probs=111.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
+|||+||||+++|+.+|||+|||+||++||||+++.+ ++++++|++|++||+||+||.+|+.||+||++++.+.
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~----- 77 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT----- 77 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC-----
Confidence 7999999999999999999999999999999999854 5788999999999999999999999999998876421
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGG 162 (199)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
++++.++|. . .| .++.|+|++||+. ++ . .+.+ + ...
T Consensus 78 --~~~~~~~~~-----~--~~--~~~~d~f~~~fg~----g~--~-----~~~~------~----------------~~~ 113 (366)
T PRK14294 78 --GFSGFSGFD-----D--IF--SSFGDIFEDFFGF----GG--G-----RRGR------S----------------RTA 113 (366)
T ss_pred --CCCCcCccc-----c--ch--hhhhhhHHHhhcc----CC--C-----cCCc------c----------------cCC
Confidence 000000010 0 01 2356889998871 11 0 0000 0 012
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
+.+++||+++|.|||||+|+||+++|++++.++|.
T Consensus 114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~ 148 (366)
T PRK14294 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCE 148 (366)
T ss_pred CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCC
Confidence 35789999999999999999999999999998875
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.7e-31 Score=236.44 Aligned_cols=146 Identities=44% Similarity=0.807 Sum_probs=111.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||+||+||.+|+.||+||++++++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~---- 77 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN---- 77 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC----
Confidence 57999999999999999999999999999999999854 5788999999999999999999999999998876431
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
+++ ++|.. .... | ..+.|+|..||++. + + .+.+ ..
T Consensus 78 --~~~---~g~~~--~~~~--~--~~f~d~f~~~fg~g----~------~-~~~~-----------------------~~ 112 (373)
T PRK14301 78 --GGF---GGFSS--AEDI--F--SHFSDIFGDLFGFS----G------G-GSRR-----------------------GP 112 (373)
T ss_pred --CCC---CCccc--cccc--c--cchHHHHHHHhhcc----C------c-cccc-----------------------CC
Confidence 000 01110 0000 1 13567888877611 0 0 0000 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
++.+++||+++|.|||||+|+||+++|+++|.+.|.
T Consensus 113 ~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~ 148 (373)
T PRK14301 113 RPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCD 148 (373)
T ss_pred CCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCC
Confidence 245789999999999999999999999999998875
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.97 E-value=8.5e-32 Score=241.24 Aligned_cols=128 Identities=45% Similarity=0.835 Sum_probs=106.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|+.||+||++++.+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~--- 98 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE--- 98 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC---
Confidence 4799999999999999999999999999999999852 37999999999999999999999999987653210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
. ..++.|+|+.||++ + ... .
T Consensus 99 --------------~--------~~d~~d~f~~~Fgg-----g--------~~~-------------------------~ 118 (421)
T PTZ00037 99 --------------Q--------PADASDLFDLIFGG-----G--------RKP-------------------------G 118 (421)
T ss_pred --------------C--------CcchhhhHHHhhcc-----c--------ccc-------------------------c
Confidence 0 01356889999872 1 000 1
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+++++||.+.|.|||||+|+||+++|+|++.+.|.
T Consensus 119 ~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~ 154 (421)
T PTZ00037 119 GKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICA 154 (421)
T ss_pred cccCCCCEEEEeeeeHHHHhCCCceEEEeecccccc
Confidence 135789999999999999999999999999999885
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.4e-31 Score=234.05 Aligned_cols=153 Identities=49% Similarity=0.743 Sum_probs=114.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+|+++||||+++.+.++|+++|++|++||++|+|+.+|+.||+||+.++...
T Consensus 1 m~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~--- 77 (365)
T PRK14290 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAG--- 77 (365)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccC---
Confidence 67899999999999999999999999999999999986655799999999999999999999999999998765321
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
.++++ ...+. .| .++.|+|..||++. +++ . . ++ +... ..
T Consensus 78 --~~~~~-~~~~~--------~~--~~~~d~f~~~fg~~--~~~--~---~----------~~-----~~~~------~~ 116 (365)
T PRK14290 78 --GSNFN-WDNFT--------HF--SDINDIFNQIFGGN--FGS--D---F----------FS-----GFGN------QQ 116 (365)
T ss_pred --CCCcc-ccccc--------cc--cchhHHHHHHhcCc--ccc--c---c----------cc-----cccc------cc
Confidence 00000 00000 11 25679999999831 110 0 0 00 0000 00
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+++++||++.|.|||||+|+||+++|+++|++.|.
T Consensus 117 ~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~ 153 (365)
T PRK14290 117 STRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCP 153 (365)
T ss_pred CCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCC
Confidence 1123589999999999999999999999999999885
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.4e-31 Score=236.83 Aligned_cols=157 Identities=41% Similarity=0.682 Sum_probs=107.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
+|||+||||+++|+++|||+|||+||++||||+|+++ +.|+++|++|++||+||+|+++|+.||+||++++..+... .
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~-~ 78 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGG-F 78 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCC-c
Confidence 4999999999999999999999999999999999854 5789999999999999999999999999998765422100 0
Q ss_pred CCCCCCCCCCCCC-CCCCCc--cCCC--CChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTG-EGPTSF--RFNP--RSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGS 157 (199)
Q Consensus 83 ~~~~g~~~~~~~~-~~~~~~--~f~~--~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (199)
+ + .++... .....| .|.. ..+.|+|+.||++. ++ + |+ + ..
T Consensus 79 -~---~-~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~------g~---~----------~~-----~---~~--- 123 (391)
T PRK14284 79 -G---G-AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGL------GE---A----------FG-----M---RG--- 123 (391)
T ss_pred -C---C-CCcCcccchhhhccccccccccccccchhhhccCc------cc---c----------cc-----c---cc---
Confidence 0 0 001000 000000 0000 01134555555411 00 0 00 0 00
Q ss_pred CCCCCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 158 MGGGGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 158 ~~~~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
....+.+++|++++|.|||||+|+||+++|++++.+.|.
T Consensus 124 -~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~ 162 (391)
T PRK14284 124 -GPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCD 162 (391)
T ss_pred -cCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCC
Confidence 001235789999999999999999999999999998875
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4.1e-31 Score=233.96 Aligned_cols=144 Identities=49% Similarity=0.838 Sum_probs=109.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+.+ +.|+++|++|++||++|+|+.+|..||+||+.++.....
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~-- 79 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGG-- 79 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCC--
Confidence 47999999999999999999999999999999999754 568899999999999999999999999999876642110
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
.+ + +.+ . . .|. ..+.++|..|||+ + . + +. ..
T Consensus 80 -~~---~---~~~--~-~--~~~-~~f~~~f~~~fgg-----~---~--~--~~------------------------~~ 110 (371)
T PRK10767 80 -GG---G---FGG--G-G--GFG-DIFGDIFGDIFGG-----G---R--G--GG------------------------RQ 110 (371)
T ss_pred -CC---C---CCC--c-c--ccc-cchhhhhhhhccC-----C---c--c--cc------------------------CC
Confidence 00 0 100 0 0 111 1134666666541 0 0 0 00 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+++++||+++|.|||||+|+||+++|++++.+.|.
T Consensus 111 ~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~ 146 (371)
T PRK10767 111 RARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCD 146 (371)
T ss_pred CCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCC
Confidence 235789999999999999999999999999998885
No 25
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.4e-30 Score=223.81 Aligned_cols=154 Identities=46% Similarity=0.781 Sum_probs=109.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++++|++|++||++|+||.+|+.||+||+++.......+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~ 80 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP 80 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence 4799999999999999999999999999999999973 57889999999999999999999999999987654221100
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
..++ ++...|. .+.+ .+++|+|+.|||+.+++++ . +.++. .. ..
T Consensus 81 ~~~~-~~~~~~~------~~~~--~~~~d~f~~~fgg~~~~~~----------~---g~~~~-----~~---------~~ 124 (291)
T PRK14299 81 PPGP-PGGGDFS------GFNV--GDFSDFFQQLFGGRGGFGG----------F---GDLFG-----SV---------GR 124 (291)
T ss_pred CCCC-CCCCCcc------ccCc--CCHHHHHHHHhCCCCCCCC----------c---ccccc-----cc---------cC
Confidence 0000 0000111 1112 3578999999983211110 0 00000 00 01
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEEEEeeee
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKKMKISRE 193 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~ 193 (199)
.++++.|++++|.|||+|+|.||+++|++..+
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i~l~g~ 156 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVVEVAGE 156 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEEeeCCE
Confidence 23578999999999999999999999998653
No 26
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.97 E-value=2e-30 Score=228.22 Aligned_cols=147 Identities=46% Similarity=0.755 Sum_probs=111.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCCC
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPDA 83 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~~ 83 (199)
|||+||||+++|+.+|||+|||+||++||||+++ .++++++|++|++||+||+|+.+|+.||+||++++..... .
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~--~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~--~- 75 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK--DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGG--G- 75 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCc--C-
Confidence 7999999999999999999999999999999997 2568899999999999999999999999999887643210 0
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 84 GGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGGA 163 (199)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
..++..++. ...| .++.++|++|||+. . + .+. . ....+
T Consensus 76 -~~~~~~~~~------~~~~--~~~~~~f~~~fg~~-----~-----g-~~~-------~---------------~~~~~ 113 (354)
T TIGR02349 76 -GGGGFNGFD------IGFF--GDFGDIFGDFFGGG-----G-----G-SGR-------R---------------RRSGP 113 (354)
T ss_pred -CCCCcCCcc------ccCc--CchhhhHHHHhccC-----c-----c-cCc-------c---------------ccCCC
Confidence 000000000 0012 24678999999821 0 0 000 0 00224
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
.+++||+++|.|||||+|+||+++|+++|.++|.
T Consensus 114 ~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~ 147 (354)
T TIGR02349 114 RRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCE 147 (354)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCC
Confidence 5789999999999999999999999999999885
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.6e-30 Score=228.91 Aligned_cols=149 Identities=39% Similarity=0.663 Sum_probs=110.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|.+|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+|+.+|..||+||++++......
T Consensus 1 ~~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~ 78 (372)
T PRK14300 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSR 78 (372)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccccccccc
Confidence 77899999999999999999999999999999999973 4688899999999999999999999999998876432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
+ + .+.+. .|. .+++++|..||+.. |++ + +.. . ..
T Consensus 79 ~---~---~g~~~--------~~~-~~~~~~f~~~f~~~--~gg------~--~~~------~---------------~~ 112 (372)
T PRK14300 79 G---G---GGNHG--------GFH-PDINDIFGDFFSDF--MGG------S--RRS------R---------------PT 112 (372)
T ss_pred C---C---CCCCC--------ccc-cchhhhHHHHHHhh--cCC------C--CCC------C---------------CC
Confidence 0 0 00000 011 12456777777621 111 0 000 0 00
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.+++||++.|.|||||+|+||+++|+++|.+.|.
T Consensus 113 ~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~ 149 (372)
T PRK14300 113 SSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCD 149 (372)
T ss_pred cCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccC
Confidence 1134789999999999999999999999999998885
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.8e-30 Score=229.19 Aligned_cols=146 Identities=42% Similarity=0.662 Sum_probs=104.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+. +.|+++|++|++||+||+|+.+|++||+||++++......
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~- 80 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE- 80 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc-
Confidence 4799999999999999999999999999999999974 5789999999999999999999999999998766421000
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCC-CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGF-SHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
..|. ..++.++|..|++. .+.|..+ + |+ + + . .
T Consensus 81 --------~~~~-----------~~~~~~~~~~~~~~~~~~f~~~-----~----------fg-----g---~-~----~ 113 (378)
T PRK14283 81 --------DIFN-----------NINFEDIFQGFGFGIGNIFDMF-----G----------FG-----G---G-S----R 113 (378)
T ss_pred --------cccc-----------ccCccccccccccchhhhcccc-----c----------cC-----C---C-C----C
Confidence 0000 00111222221110 0000000 0 00 0 0 0 0
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.+++||+++|.|||||+|+||+++|+++|.+.|.
T Consensus 114 ~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~ 150 (378)
T PRK14283 114 HGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCP 150 (378)
T ss_pred CCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCC
Confidence 1235789999999999999999999999999998885
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.2e-29 Score=224.85 Aligned_cols=147 Identities=41% Similarity=0.706 Sum_probs=111.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|..|||+||||+++|+.+|||+|||+|+++||||+|+. +.++++|++|++||+||+||.+|++||.||++++.+.
T Consensus 1 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~--- 75 (374)
T PRK14293 1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGA--- 75 (374)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccC---
Confidence 67899999999999999999999999999999999974 4688999999999999999999999999998765421
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGG 160 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (199)
.++++ +. .+ ..+.|+|+.||+. |++ . + +.. ++ . ..
T Consensus 76 ---~~~~~---~~--------~~--~~~~d~f~~~fg~---~~~---~--~--~~~-----~~--------~------~~ 110 (374)
T PRK14293 76 ---AGFPD---MG--------DM--GGFADIFETFFSG---FGG---A--G--GQG-----GR--------R------RR 110 (374)
T ss_pred ---CCcCC---cc--------cc--cchHHHHHHHhcc---cCC---C--C--CCC-----cc--------c------cc
Confidence 00000 00 01 1346899999872 111 0 0 000 00 0 00
Q ss_pred CCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 161 GGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 161 ~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.+++||++.|.|||||+|+||+++|+++|.++|.
T Consensus 111 ~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~ 147 (374)
T PRK14293 111 RGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCE 147 (374)
T ss_pred cCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCC
Confidence 1235789999999999999999999999999998875
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=1.8e-29 Score=223.55 Aligned_cols=142 Identities=42% Similarity=0.727 Sum_probs=110.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
+|||+||||+++|+.+|||+|||+|+++||||+++. .+++++|++|++||+||+||.+|+.||+||+++..+. .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~---~- 75 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM---P- 75 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc---c-
Confidence 699999999999999999999999999999999973 5788999999999999999999999999998653110 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGG 162 (199)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
+ + ..|. .+.| +++|+|+.|||+. ++ ++. .+ ...
T Consensus 76 -~---~-~~~~------~~~~---d~~d~f~~~fg~~----~~-------~~~------~~----------------~~~ 108 (371)
T PRK14292 76 -G---G-DPFG------GMGF---DPMDIFEQLFGGA----GF-------GGG------RG----------------RRG 108 (371)
T ss_pred -C---C-cccC------ccCC---ChHHHHHHhhCCC----Cc-------CCC------CC----------------ccc
Confidence 0 0 0011 0112 4679999999821 00 000 00 011
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
+.+++||++.|.|||||+|+||+++|++++.+.|.
T Consensus 109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~ 143 (371)
T PRK14292 109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECE 143 (371)
T ss_pred ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCC
Confidence 35789999999999999999999999999998875
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=2.7e-29 Score=223.46 Aligned_cols=152 Identities=43% Similarity=0.730 Sum_probs=108.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
.+|||+||||+++|+.+|||+|||+||++||||+|+.+ ++|+++|++|++||++|+||.+|++||+||+++++...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~--- 79 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAA--- 79 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCC---
Confidence 57999999999999999999999999999999999854 57999999999999999999999999999987664210
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHh---hCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEF---FGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSM 158 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~---fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (199)
..+ ++.+ . .+ ++.++|..| |+.. |++ .++.. .++ .+ .
T Consensus 80 ~~~------~~~~-~-----~~---~~~~~f~~f~~~fg~~--~gg-------~~~~~----~~~--------~~----~ 119 (386)
T PRK14289 80 GGG------GFSG-E-----GM---SMEDIFSMFGDIFGGH--GGG-------FGGFG----GFG--------GG----G 119 (386)
T ss_pred CCC------CCCC-C-----Cc---ChhhhhHHhhhhhccc--ccC-------ccccc----ccc--------cc----c
Confidence 000 0110 0 01 234555443 4311 000 00000 000 00 0
Q ss_pred CCCCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 159 GGGGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 159 ~~~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
....+.+++||++.|.|||||+|+||+++|+++|.+.|.
T Consensus 120 ~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 158 (386)
T PRK14289 120 SQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCS 158 (386)
T ss_pred ccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccC
Confidence 001235789999999999999999999999999999874
No 32
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-30 Score=219.80 Aligned_cols=133 Identities=49% Similarity=0.844 Sum_probs=102.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPP 81 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~ 81 (199)
++|||+||||+++|+..|||+|||||||++||||||++ +.|.+.|++|+.||+|||||++|+.||+||+++++... ..
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~-~~ 92 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN-KD 92 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc-cc
Confidence 58999999999999999999999999999999999977 68999999999999999999999999999999987431 00
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 82 DAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGG 161 (199)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
..+ + . ...++|+.||+. |+. . ++. .....
T Consensus 93 ~~~---g-------~----------~~~~~f~~~f~d---fg~---~-------------~~g------------~~~~e 121 (336)
T KOG0713|consen 93 GEG---G-------G----------GGNDIFSAFFGD---FGV---T-------------VGG------------NPLEE 121 (336)
T ss_pred ccc---C-------C----------cccchHHHhhcc---ccc---c-------------cCC------------CcccC
Confidence 000 0 0 003678888772 111 0 000 00012
Q ss_pred CCCCCCCeEEEEeeeHHHHhcCceEE
Q 029075 162 GARKAPPIENKLPCSLEDLYKGTTKK 187 (199)
Q Consensus 162 ~~~~g~di~~~l~vtLee~~~G~~k~ 187 (199)
...++.++...|+.+++++|.+....
T Consensus 122 ~~~~g~~V~~~~e~~~~h~y~~~~~e 147 (336)
T KOG0713|consen 122 ALPKGSDVSSDLEKQLEHFYMGNFVE 147 (336)
T ss_pred CCCCCceEEeehhhchhhhhcccHHH
Confidence 25689999999999999999986543
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.96 E-value=1.7e-28 Score=212.30 Aligned_cols=144 Identities=33% Similarity=0.510 Sum_probs=107.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
+|||+||||+++|+.+|||+|||+||++||||+++. +.++++|++|++||++|+|+.+|..||.||...........
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~- 80 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ- 80 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccc-
Confidence 799999999999999999999999999999999863 47899999999999999999999999999854211000000
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGG 162 (199)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
.. +.+ + . .+...++.++|..||+.. + + ... ...
T Consensus 81 -~~------~~~-~--~--~~~~~~~~~~f~~~~g~~----~------~-~~~------------------------~~~ 113 (306)
T PRK10266 81 -FQ------HGD-G--Q--SFNAEDFDDIFSSIFGQH----A------R-QSR------------------------QRP 113 (306)
T ss_pred -cc------cCC-C--C--CCCCCCHHHHHHHHhCCC----C------C-CCC------------------------CCC
Confidence 00 000 0 0 111235789999998721 0 0 000 011
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeec
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKISREIAD 196 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~ 196 (199)
.++++|+.++|.|||+|+|+||+++|++++.+.|
T Consensus 114 ~~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~ 147 (306)
T PRK10266 114 AARGHDIEIEVAVFLEETLTEHKRTISYNLPVYN 147 (306)
T ss_pred CCCCCceEEEEEEEHHHhcCCceEEEEEeccccc
Confidence 3578999999999999999999999999887655
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.6e-23 Score=176.28 Aligned_cols=125 Identities=42% Similarity=0.638 Sum_probs=101.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCCC
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPDA 83 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~~ 83 (199)
|||+||||+++|+..|||+||++||++||||.|... +|.++|++|.+||+||+|+++|..||.++.++.
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~--------- 112 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQEYDVYGLEQH--------- 112 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc---------
Confidence 899999999999999999999999999999999754 899999999999999999999999999986640
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 84 GGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGGA 163 (199)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
.+ + ..++.++|..+|+.. + ...
T Consensus 113 ~~------~------------~g~~~~~~~~~~~~~---------------~-------------------------~~~ 134 (288)
T KOG0715|consen 113 GE------F------------GGNPFDVFLEFFGGK---------------M-------------------------NKR 134 (288)
T ss_pred cc------c------------cCCccchHHHhhccc---------------c-------------------------ccc
Confidence 00 0 013567788777720 0 112
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecC
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMKISREIADI 197 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~ 197 (199)
..+.++++.+.++|+||..|+.+.+.+.....|.
T Consensus 135 ~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~ 168 (288)
T KOG0715|consen 135 VPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCE 168 (288)
T ss_pred ccCcccccccccCHHHHhhccccceEEEeecccc
Confidence 3456788889999999999999999988776553
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.6e-22 Score=166.04 Aligned_cols=73 Identities=59% Similarity=1.031 Sum_probs=68.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLK 75 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~ 75 (199)
..|+|+||||+++|+.++||||||+|++++|||+++++ +++.++|++||+||+||+||.+|..||+||+.+++
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 35899999999999999999999999999999999977 68899999999999999999999999999887665
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.7e-20 Score=154.90 Aligned_cols=185 Identities=52% Similarity=0.790 Sum_probs=118.6
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPP 80 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~ 80 (199)
|..|||+||+|.++|+..+|++||++|+++||||+|+.....++.+|++|.+||++|+|+.+|.+||++|++++++...
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~- 79 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGS- 79 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCC-
Confidence 6789999999999999999999999999999999988654456668999999999999999999999999866554110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCC--CCCCCCCCCC----
Q 029075 81 PDAGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGD--DMFGPFGEGG---- 154 (199)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---- 154 (199)
. ...+. . ..+.+....+.++|.+|||...++...... ...-........+.. ..+.......
T Consensus 80 -----~--~~~~~--~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (306)
T KOG0714|consen 80 -----F--SSSFT--S--ELFYFLFRKPDKDFYEFFGVSSPFSGSKKG-YRDKNAAPGEEAFKSEGKAFQSLYGPKRKQY 147 (306)
T ss_pred -----C--CCCCC--C--CcceeccCchhhhHHHHhCCCCCCcccccc-CCccccccCccccccccccccccCCCccccc
Confidence 0 00000 0 012233456789999999977776532000 000000000000110 0000000000
Q ss_pred CCCCCCCCCCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecCC
Q 029075 155 GGSMGGGGARKAPPIENKLPCSLEDLYKGTTKKMKISREIADIS 198 (199)
Q Consensus 155 ~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~~ 198 (199)
.........++.+.+.+.+.+++++++.+|++++.+.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (306)
T KOG0714|consen 148 DSSGSDRSARQSPPVEHPLRVSLEDLYKGESKKMKISRQSFTSN 191 (306)
T ss_pred ccccccccccCCCCccCCcceeHHHhccccceeeecccccccCC
Confidence 00000122345556888999999999999999999998876543
No 37
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.7e-21 Score=169.17 Aligned_cols=75 Identities=55% Similarity=1.000 Sum_probs=69.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP--NNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQ 77 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~--~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~ 77 (199)
.|||.+|+|+++|+.+|||+|||++++.|||||.. +.+..|++.|+.|.+||||||||++|.+||.||+++++..
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~ 85 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE 85 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence 58999999999999999999999999999999974 4456799999999999999999999999999999999843
No 38
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.7e-21 Score=168.51 Aligned_cols=77 Identities=53% Similarity=0.915 Sum_probs=72.4
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQ 77 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~ 77 (199)
|.+.||+||||.++|++.+||++||+|||+|||||||...++|.++|+.|+.||+|||||+.|..||.+.+.-|.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999998888999999999999999999999999999998877654
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-20 Score=161.74 Aligned_cols=72 Identities=51% Similarity=0.933 Sum_probs=67.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGL 74 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~ 74 (199)
+.|||+||||+..|+..||++|||++|++|||||||+++ +|.++|+.|.+||+||+|+.+|..||.++....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 579999999999999999999999999999999999885 599999999999999999999999999986643
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.82 E-value=1.5e-20 Score=126.42 Aligned_cols=64 Identities=52% Similarity=0.966 Sum_probs=60.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD 67 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd 67 (199)
|||+||||+++++.++||++|+++++++|||+++.....+++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987654568999999999999999999999998
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.79 E-value=9.2e-20 Score=173.36 Aligned_cols=72 Identities=39% Similarity=0.711 Sum_probs=67.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLK 75 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~ 75 (199)
+++||+||||+++|+..+||+|||+||++||||+++.. .|.++|+.|++||+||+||.+|+.||+||..+++
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 57999999999999999999999999999999999853 5888999999999999999999999999987654
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.7e-19 Score=146.62 Aligned_cols=71 Identities=51% Similarity=0.900 Sum_probs=65.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcc
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP-NNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGE 71 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~-~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~ 71 (199)
|.+|+|+||||.++|++.+||+||++|+|+||||+++ .+..++.++|+.|+.||.||+|.++|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 3579999999999999999999999999999999996 2346799999999999999999999999999774
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.75 E-value=2.6e-18 Score=113.78 Aligned_cols=60 Identities=70% Similarity=1.155 Sum_probs=54.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQK 62 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~ 62 (199)
.|||+||||+++++.++||++|++|++++|||+++...+.+.+.|+.|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999974346788999999999999999853
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.1e-18 Score=138.37 Aligned_cols=70 Identities=41% Similarity=0.830 Sum_probs=64.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEE 72 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~ 72 (199)
..|+||||||++.++..|||||||+|++++||||+|.. .+.++.|..|++||+.|+|+..|+.|..||+.
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 36999999999999999999999999999999999753 56788999999999999999999999999964
No 45
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.73 E-value=8.2e-18 Score=157.10 Aligned_cols=70 Identities=54% Similarity=1.014 Sum_probs=65.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccc
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGL 74 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~ 74 (199)
.|||+||||+++|+.++||+|||+|+++||||+++. ..+.++|++|++||++|+||.+|..||.||..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 699999999999999999999999999999999875 5688899999999999999999999999987654
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.72 E-value=6.2e-18 Score=146.30 Aligned_cols=74 Identities=58% Similarity=0.935 Sum_probs=65.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNN--KKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQ 77 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~--~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~ 77 (199)
+|||+||||.++|+..||.|||||||.+||||--.+. ...|+++|..|..|-+||+||++|+.||+ |+..+...
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~E 469 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDPE 469 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCChh
Confidence 7999999999999999999999999999999975432 35699999999999999999999999998 76655543
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.1e-18 Score=136.01 Aligned_cols=70 Identities=61% Similarity=1.013 Sum_probs=64.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
|.+|||+||||+++|+..|||+|||+|++++|||+++.....+++.|+.|++||++|+|+.+|..||+++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3579999999999999999999999999999999998653248999999999999999999999999974
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.72 E-value=1.1e-17 Score=108.74 Aligned_cols=55 Identities=69% Similarity=1.167 Sum_probs=51.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCC
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSD 59 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd 59 (199)
|||+||||+++++.++||++||+|++++|||+++.. +.+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999753 5788999999999999986
No 49
>PHA03102 Small T antigen; Reviewed
Probab=99.72 E-value=9.6e-18 Score=131.22 Aligned_cols=65 Identities=26% Similarity=0.450 Sum_probs=59.9
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccc
Q 029075 4 DYYKILGVDRNA--KDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73 (199)
Q Consensus 4 d~Y~iLgv~~~a--~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~ 73 (199)
.+|+||||+++| |.++||+|||++++++|||++++ +++|++|++||++|+|+.+|..||.+|++.
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 579999999999 99999999999999999999852 369999999999999999999999998654
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.62 E-value=9.1e-16 Score=122.60 Aligned_cols=66 Identities=32% Similarity=0.548 Sum_probs=58.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 3 VDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNKK----DAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 3 ~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~~----~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+|||+||||++. ++..+|+++||+|++++|||+.+...+ .+.+.+..|++||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 499999999996 688999999999999999999754322 366789999999999999999999985
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.59 E-value=2.8e-15 Score=119.24 Aligned_cols=67 Identities=28% Similarity=0.487 Sum_probs=58.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh--hHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 3 VDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNK--KDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 3 ~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~--~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.|||+||||++. ++..+|+++||+|++++|||++.... ..+.+.+..|++||++|+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 699999999997 78999999999999999999986321 23445688999999999999999999864
No 52
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.1e-15 Score=132.75 Aligned_cols=66 Identities=61% Similarity=1.025 Sum_probs=63.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+|||+||||.+.++..|||+|||++++.||||++..+..+++.+|++|-+||.||+||.+|..||.
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 699999999999999999999999999999999987778999999999999999999999999997
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=1.3e-14 Score=115.98 Aligned_cols=68 Identities=26% Similarity=0.400 Sum_probs=59.7
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh----hHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 2 GVDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNK----KDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 2 ~~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
..|||++|||++. .+..+|+++||+|++++|||++.... ..+.+.+..||+||++|+||.+|..|+.-
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 5799999999997 56899999999999999999976432 23667899999999999999999999963
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.54 E-value=1.2e-14 Score=116.58 Aligned_cols=67 Identities=30% Similarity=0.434 Sum_probs=57.6
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 2 GVDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNKK----DAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 2 ~~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~~----~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
..|||+||||++. ++..+|+++||+|++++|||+++...+ .+.+.+..||+||++|+||.+|..|..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 689999999999999999999864322 244557999999999999999999996
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.7e-15 Score=121.99 Aligned_cols=65 Identities=40% Similarity=0.745 Sum_probs=60.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.|+|+||||.++++..||++|||+||+++|||++++ ++..+.|+.|..||++|.|.+.|..||-.
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 589999999999999999999999999999999974 45668999999999999999999999954
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-14 Score=128.95 Aligned_cols=66 Identities=47% Similarity=0.653 Sum_probs=62.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.+|.|.||||++++++++|||.|||||...|||||. .+.|++.|+.|+.||++|+|+.+|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~--~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM--IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC--ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 479999999999999999999999999999999996 468999999999999999999999999964
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.43 E-value=1.1e-13 Score=103.43 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=45.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLS 58 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Ls 58 (199)
.++|+||||+++++.+|||++||+|++++|||++. + .+.|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S----TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C----HHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999863 2 257889999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.42 E-value=1.3e-13 Score=117.38 Aligned_cols=57 Identities=40% Similarity=0.643 Sum_probs=50.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------ChhHHHHHHHHHHHHhhhcCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPN------NKKDAETKFKQISEAYEVLSD 59 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~------~~~~a~~~f~~i~~Ay~~Lsd 59 (199)
.|+|+||||++++|.+|||+|||+|+++||||++.. ..+.++++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999632 124688999999999999975
No 59
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.39 E-value=3e-13 Score=120.13 Aligned_cols=74 Identities=43% Similarity=0.811 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPN----NKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLK 75 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~----~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~ 75 (199)
..|+||||||+.+++..+||++||+|++|+||||-+. ...+.++.+++|++||..|+|...|+.|-.||+-..+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~p 174 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSP 174 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCC
Confidence 4699999999999999999999999999999999653 3457889999999999999999999999999975443
No 60
>PHA02624 large T antigen; Provisional
Probab=99.34 E-value=7.1e-13 Score=122.75 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=55.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh
Q 029075 3 VDYYKILGVDRNA--KDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD 67 (199)
Q Consensus 3 ~d~Y~iLgv~~~a--~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd 67 (199)
.++|+||||+++| +.++||+|||+||++||||++. ++++|++|++||++|+|+.+|..|.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-----deekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-----DEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 4789999999999 9999999999999999999973 2479999999999999999999994
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.2e-12 Score=102.36 Aligned_cols=64 Identities=34% Similarity=0.694 Sum_probs=59.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhh
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 65 (199)
..++|+||.|.|..+.++||+.||+|++..||||||++.+.|...|.-|.+||.+|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4689999999999999999999999999999999999888899999999999999999875443
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=1.1e-11 Score=99.31 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=57.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh----hHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 3 VDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNK----KDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 3 ~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.|||++|||++. .+..++++.|++|.+++|||+..... ..+.+.-..||+||.+|+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 799999999996 89999999999999999999965332 2356678999999999999999999965
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.12 E-value=1.4e-10 Score=91.59 Aligned_cols=56 Identities=29% Similarity=0.418 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCC----hhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 15 AKDDDLKKAYRKLAMKWHPDKNPNN----KKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 15 a~~~eIkkayrkla~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
.+..+|+++||+|++++|||+.+.. ...+.+.+..||+||++|+||.+|..|...-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 4778999999999999999986432 2347789999999999999999999999743
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.1e-10 Score=94.84 Aligned_cols=68 Identities=38% Similarity=0.585 Sum_probs=59.1
Q ss_pred CCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC-CChhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 3 VDYYKILGVDR---NAKDDDLKKAYRKLAMKWHPDKNP-NNKKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 3 ~d~Y~iLgv~~---~a~~~eIkkayrkla~~~HPDk~~-~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
.|+|.+|||+. .+++.+|.+|.++.+.+||||+.. +......+.|+.|+.||+||+|+.+|..||..-
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 48899999998 788999999999999999999963 112356789999999999999999999999743
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.8e-08 Score=92.84 Aligned_cols=51 Identities=43% Similarity=0.734 Sum_probs=44.3
Q ss_pred CcccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcC
Q 029075 4 DYYKILGVDRNA----KDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLS 58 (199)
Q Consensus 4 d~Y~iLgv~~~a----~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Ls 58 (199)
+-|+||.|+-+- .++.||++|+|||.+||||||| +-.++|..|++||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHHHHHH
Confidence 469999998733 4588999999999999999997 45579999999999997
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-07 Score=76.29 Aligned_cols=55 Identities=35% Similarity=0.723 Sum_probs=48.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhh-hcCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYE-VLSD 59 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~-~Lsd 59 (199)
+.||.||||...|+.++++.||.+|++++|||...+ +...++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~--~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE--EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc--cccHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999853 345679999999998 7754
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.3e-06 Score=64.00 Aligned_cols=49 Identities=31% Similarity=0.473 Sum_probs=41.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCCh
Q 029075 7 KILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDP 60 (199)
Q Consensus 7 ~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~ 60 (199)
.||+|+++++.+.||+|+|++.+..|||+.... =.-..||||+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999998532 1234599999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00014 Score=56.88 Aligned_cols=66 Identities=29% Similarity=0.580 Sum_probs=52.9
Q ss_pred CCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCC----CChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 3 VDYYKILGVDR--NAKDDDLKKAYRKLAMKWHPDKNP----NNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 3 ~d~Y~iLgv~~--~a~~~eIkkayrkla~~~HPDk~~----~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
++||.++|... ...+.-++.-|.-..++.|||+.. .....|.+.-.+|++||.+|.||-+|+.|=.
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899986555 456666777899999999999831 2234678889999999999999999999964
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.31 E-value=0.00028 Score=64.47 Aligned_cols=51 Identities=31% Similarity=0.477 Sum_probs=35.3
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hhH----HHHHHHHHHHHhhh
Q 029075 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNN--KKD----AETKFKQISEAYEV 56 (199)
Q Consensus 6 Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~--~~~----a~~~f~~i~~Ay~~ 56 (199)
|+-+.|..-.+.++|||+|||.+|..||||.+.. ... +++.|-.+.+||+.
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3445566677999999999999999999997532 223 44445555555543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00023 Score=56.95 Aligned_cols=55 Identities=44% Similarity=0.640 Sum_probs=46.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--C----ChhHHHHHHHHHHHHhhhc
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP--N----NKKDAETKFKQISEAYEVL 57 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~--~----~~~~a~~~f~~i~~Ay~~L 57 (199)
.+.|++|++...+...+|+++|+++...+|||+-. . --+.+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999732 1 1246888999999999754
No 71
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=96.85 E-value=0.0011 Score=63.58 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCeEEEEeeeHHHHhcCceEEEEeeeeeecCC
Q 029075 165 KAPPIENKLPCSLEDLYKGTTKKMKISREIADIS 198 (199)
Q Consensus 165 ~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~~ 198 (199)
..-+|++.|.|||||+|+||+|+|+++|+|.|..
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~ 688 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGN 688 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeeccCC
Confidence 4458999999999999999999999999998754
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0026 Score=50.90 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=51.8
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCh----hHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 4 DYYKILGVDRNA--KDDDLKKAYRKLAMKWHPDKNPNNK----KDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 4 d~Y~iLgv~~~a--~~~eIkkayrkla~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
+|+.+.++++.. ..+.++..|+.+.+.+|||+..... ..+.+.+..++.||.+|.+|.+|..|=.-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 566667777755 4466899999999999999964221 23556899999999999999999999753
No 73
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.36 E-value=0.025 Score=43.12 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=35.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChh
Q 029075 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQ 61 (199)
Q Consensus 6 Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~ 61 (199)
.+||+|++..+.++|.+.|.+|....+|++...- =.-..|..|.+.|....
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSf-----YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGSF-----YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-H-----HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCH-----HHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999987421 12345777777775443
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.07 E-value=0.13 Score=33.85 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=23.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHH
Q 029075 5 YYKILGVDRNAKDDDLKKAYRKLAM 29 (199)
Q Consensus 5 ~Y~iLgv~~~a~~~eIkkayrkla~ 29 (199)
-|++|||+++.+++.|-.+|+....
T Consensus 7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 7 AYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998877
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=0.28 Score=42.88 Aligned_cols=56 Identities=36% Similarity=0.555 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC---ChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 14 NAKDDDLKKAYRKLAMKWHPDKNPN---NKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 14 ~a~~~eIkkayrkla~~~HPDk~~~---~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.++..+|+.+|+..++..||++-.. .....++.+++|.+||.||.+..+|...|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 3577899999999999999998731 1124567799999999999986655555543
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=89.06 E-value=0.62 Score=34.69 Aligned_cols=48 Identities=29% Similarity=0.431 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCC---CCChhHHHHHHHHHHHHhhhcCCh
Q 029075 13 RNAKDDDLKKAYRKLAMKWHPDKN---PNNKKDAETKFKQISEAYEVLSDP 60 (199)
Q Consensus 13 ~~a~~~eIkkayrkla~~~HPDk~---~~~~~~a~~~f~~i~~Ay~~Lsd~ 60 (199)
+..+..++|.|.|.+.++.|||.- |.....-++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 456778999999999999999963 332233444566666666655543
No 77
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=88.44 E-value=0.47 Score=32.82 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred CeEEEEeeeHHHHhcCceEEEE
Q 029075 168 PIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 168 di~~~l~vtLee~~~G~~k~l~ 189 (199)
|+..++.|+|.||+.||+++|.
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~ 22 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIP 22 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEEE
Confidence 6889999999999999999884
No 78
>PRK14291 chaperone protein DnaJ; Provisional
Probab=86.79 E-value=0.72 Score=41.34 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=25.5
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.||.++|.|||+||+.|++++|..
T Consensus 271 ~r~G~DL~~~~~Isl~eAl~G~~~~i~~ 298 (382)
T PRK14291 271 ERRGDNLYLDVNITVAEAVLGTELEVPL 298 (382)
T ss_pred eeecCCeEEEEEeeHHHHhCCCEEEEec
Confidence 3578999999999999999999999876
No 79
>PRK14284 chaperone protein DnaJ; Provisional
Probab=85.29 E-value=0.87 Score=40.95 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.||.++|.|||+||+.|++++|.
T Consensus 274 ~R~G~DL~~~~~Isl~eAl~G~~~~v~ 300 (391)
T PRK14284 274 ERRGDDLILELPIGFVDAALGMKKEIP 300 (391)
T ss_pred eeecCCEEEEEEecHHHHhCCCeEEEe
Confidence 467899999999999999999999985
No 80
>PRK14282 chaperone protein DnaJ; Provisional
Probab=82.75 E-value=1.3 Score=39.44 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.||.++|.|||+||+.|+++.|..
T Consensus 272 ~r~G~DL~~~~~Isl~eAl~G~~~~i~~ 299 (369)
T PRK14282 272 KRSGSDLIYDVTIDYLQAILGTTVEVPL 299 (369)
T ss_pred EEecCCEEEEEEeCHHHHhCCCEEEEeC
Confidence 3578999999999999999999998875
No 81
>PRK14299 chaperone protein DnaJ; Provisional
Probab=80.15 E-value=1.5 Score=37.70 Aligned_cols=28 Identities=4% Similarity=-0.050 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.||..++.|||.||+.|+++.|..
T Consensus 197 ~R~G~DL~~~~~Isl~eAl~G~~~~v~t 224 (291)
T PRK14299 197 RLEGDDLYATVDVPAPIAVVGGKVRVMT 224 (291)
T ss_pred EEECCEEEEEEecCHHHHhCCCEEEEEC
Confidence 3578999999999999999999987763
No 82
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=79.08 E-value=2 Score=37.98 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+...+.|||+||+.|+++.|.
T Consensus 263 ~r~g~DL~~~~~isl~eAl~G~~~~i~ 289 (354)
T TIGR02349 263 ERDGNDLYIEVPISFTQAILGGEIEVP 289 (354)
T ss_pred EEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 357889999999999999999998884
No 83
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=78.37 E-value=2 Score=37.23 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
+.+.|+..+|.|||.+|+.||++.|..
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~ 232 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPT 232 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeC
Confidence 568899999999999999999988764
No 84
>PRK14279 chaperone protein DnaJ; Provisional
Probab=77.14 E-value=2.4 Score=38.17 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.||.++|.|||.||+.|.++.|..
T Consensus 289 ~R~G~DL~~~~~Isl~eAl~G~~~~v~~ 316 (392)
T PRK14279 289 GRDGDDLTVTVPVSFTELALGSTLSVPT 316 (392)
T ss_pred eeecCcEEEEEEccHHHHcCCceEEEEc
Confidence 4578999999999999999999988763
No 85
>PRK14295 chaperone protein DnaJ; Provisional
Probab=77.07 E-value=2.7 Score=37.85 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+..+|.|||.||+.|++++|.
T Consensus 282 ~R~G~DL~~~~~Isl~eAl~G~~~~I~ 308 (389)
T PRK14295 282 GRSGDNLTVTVPVTFPEAALGAEVRVP 308 (389)
T ss_pred EEecCCEEEEEeecHHHHhCCCeEEEE
Confidence 357899999999999999999999884
No 86
>PRK14276 chaperone protein DnaJ; Provisional
Probab=76.89 E-value=2.5 Score=37.81 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.|+..++.|||+||+.|++++|..
T Consensus 266 ~R~G~DL~~~~~Isl~eAl~G~~~~v~t 293 (380)
T PRK14276 266 ERDGSTIYYTLPISFVQAALGDTVEVPT 293 (380)
T ss_pred eeecceEEEEEecCHHHHhCCCeEEEEc
Confidence 3578999999999999999999988864
No 87
>PRK14300 chaperone protein DnaJ; Provisional
Probab=76.49 E-value=2.6 Score=37.59 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.|+.++|.|||.||+.|++++|..
T Consensus 261 ~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ 288 (372)
T PRK14300 261 KVDGANLHCKLPISFVNAALGGEIEVPV 288 (372)
T ss_pred EEecCCEEEEEecCHHHHhCCCEEEEec
Confidence 3578999999999999999999999886
No 88
>PRK14294 chaperone protein DnaJ; Provisional
Probab=76.44 E-value=3.1 Score=37.05 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+.++|.|||.||+.|+++.|.
T Consensus 260 ~R~G~DL~~~~~Isl~eAl~G~~~~i~ 286 (366)
T PRK14294 260 ERDGNDVHCKVPISFVQAALGAQIEVP 286 (366)
T ss_pred eecCCCEEEEEEeCHHHHhCCCeEEEE
Confidence 467899999999999999999999887
No 89
>PRK14287 chaperone protein DnaJ; Provisional
Probab=76.37 E-value=2.7 Score=37.49 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.|+..++.|||.||+.|++++|..
T Consensus 258 ~R~G~DL~~~~~Isl~eAl~G~~~~i~~ 285 (371)
T PRK14287 258 ERDGDDIYCEMPLTFPQVALGDEIEVPT 285 (371)
T ss_pred EEecCCeEEEEeccHHHHhCCCEEEEEc
Confidence 3578999999999999999999988874
No 90
>PRK14280 chaperone protein DnaJ; Provisional
Probab=76.20 E-value=2.7 Score=37.58 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+.+++.|||.||+.|++++|.
T Consensus 263 ~R~G~DL~~~~~Isl~eAl~G~~~~i~ 289 (376)
T PRK14280 263 ERDGDDIYCEMPLTFAQAALGDEIEVP 289 (376)
T ss_pred EEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 357899999999999999999998887
No 91
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=75.49 E-value=13 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP 37 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~ 37 (199)
|-++.-++.+++|-+++.||+.|-++.++|..--..|
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 4566778899999999999999988888777444443
No 92
>PRK14290 chaperone protein DnaJ; Provisional
Probab=75.32 E-value=3 Score=37.09 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=24.8
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
+.+.|+.+++.|||.||+.|++++|..
T Consensus 267 R~G~DL~~~~~Isl~eAl~G~~~~I~~ 293 (365)
T PRK14290 267 RINDDLYVDQKINFPQAALGGEIEIKL 293 (365)
T ss_pred EecCCEEEEEEeCHHHHhCCCEEEEEc
Confidence 568999999999999999999998875
No 93
>PRK14298 chaperone protein DnaJ; Provisional
Probab=74.97 E-value=2.9 Score=37.40 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
+++.||.+++.|||.||+.|+++.|.
T Consensus 262 R~G~DL~~~~~Isl~eAl~G~~~~i~ 287 (377)
T PRK14298 262 RVGDDIISEIPISFTQAALGADIMVP 287 (377)
T ss_pred EEcCcEEEEEEeCHHHHhCCCeEEEe
Confidence 57899999999999999999998884
No 94
>PRK14281 chaperone protein DnaJ; Provisional
Probab=74.86 E-value=3.1 Score=37.46 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.|+..++.|||.||+.|+++.|..
T Consensus 282 ~R~G~DL~~~~~Isl~eAl~G~~~~i~t 309 (397)
T PRK14281 282 VRNGDDVIYNLAVSYPDLVLGTKVEVPT 309 (397)
T ss_pred EEecCCEEEEEEecHHHHhcCCeEEeec
Confidence 3578999999999999999999988873
No 95
>PRK14297 chaperone protein DnaJ; Provisional
Probab=74.56 E-value=3 Score=37.30 Aligned_cols=27 Identities=26% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
+++.|+..++.|||.||+.|++++|..
T Consensus 269 R~G~DL~~~~~Isl~eAl~G~~~~i~~ 295 (380)
T PRK14297 269 RKGFDIYIDKHISFAKAALGTEIKVPT 295 (380)
T ss_pred EeCCCEEEEEEeCHHHHhCCCcEEEEc
Confidence 478999999999999999999988775
No 96
>PRK14286 chaperone protein DnaJ; Provisional
Probab=74.20 E-value=3.5 Score=36.85 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.||..++.|||.||+.|++++|.
T Consensus 266 ~R~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (372)
T PRK14286 266 ERQGNDLILVRKISLAQAILGAEIEVP 292 (372)
T ss_pred EEecCCEEEEEEECHHHHhCCCEEEEe
Confidence 357899999999999999999998884
No 97
>PRK10767 chaperone protein DnaJ; Provisional
Probab=73.73 E-value=3.5 Score=36.73 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.9
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
+.+.|+..++.|||.||+.|+++.|.
T Consensus 259 R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK10767 259 RDGNDLYCEVPISFTTAALGGEIEVP 284 (371)
T ss_pred EecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 57899999999999999999999883
No 98
>PRK14278 chaperone protein DnaJ; Provisional
Probab=73.13 E-value=3.8 Score=36.69 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+..+|.|||.||+.|++++|.
T Consensus 259 ~R~G~DL~~~~~Isl~eAl~G~~~~i~ 285 (378)
T PRK14278 259 VRDGDDLHCTVSVPMVDAALGTTVTVE 285 (378)
T ss_pred EEcCCCEEEEEecCHHHHhcCCeEEEe
Confidence 367899999999999999999999888
No 99
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=73.11 E-value=4.5 Score=33.02 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcC
Q 029075 12 DRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLS 58 (199)
Q Consensus 12 ~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Ls 58 (199)
+++|+.+||.+|+.+|..+|--|. +.-..|-.||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~---------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE---------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHHHH
Confidence 478999999999999999883332 23334778887653
No 100
>PRK14301 chaperone protein DnaJ; Provisional
Probab=71.77 E-value=4.4 Score=36.21 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+.+++.|||.||+.|++++|.
T Consensus 260 ~r~G~DL~~~~~Isl~eAl~G~~~~v~ 286 (373)
T PRK14301 260 QRQGQDLVVTQEISFVQAALGDRIEVP 286 (373)
T ss_pred eeecCcEEEEEEecHHHHhCCCeEEEe
Confidence 457899999999999999999998885
No 101
>PRK14277 chaperone protein DnaJ; Provisional
Probab=70.73 E-value=4.5 Score=36.28 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.7
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
+++.||..++.|||.||+.|++++|.
T Consensus 276 R~G~DL~~~~~Isl~eAl~G~~~~i~ 301 (386)
T PRK14277 276 REGYNVYLEMPITFTDAALGGEIEIP 301 (386)
T ss_pred EecCCEEEEEEcCHHHHhCCCEEEEE
Confidence 56889999999999999999998884
No 102
>PRK14285 chaperone protein DnaJ; Provisional
Probab=70.41 E-value=4.4 Score=36.07 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+.+.|+..++.|||.||+.|+++.|..
T Consensus 262 ~R~G~dL~~~~~Isl~eAl~G~~~~i~t 289 (365)
T PRK14285 262 KRNGKDLYATLPISFTQAALGKEIKIQT 289 (365)
T ss_pred EEeccceEEEEecCHHHHhCCCEEEEEC
Confidence 3578899999999999999999988875
No 103
>PRK14283 chaperone protein DnaJ; Provisional
Probab=69.54 E-value=4.8 Score=35.99 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=24.1
Q ss_pred CCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 164 RKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 164 ~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
+.+.|+..++.|||+||+.|+++.|.
T Consensus 267 r~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (378)
T PRK14283 267 REGANLYYEKPISFVQAALGDTVDVP 292 (378)
T ss_pred EecCCEEEEEecCHHHHhcCCeEEEE
Confidence 56889999999999999999999887
No 104
>PRK14288 chaperone protein DnaJ; Provisional
Probab=68.23 E-value=5 Score=35.82 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.++|.||..++.|||.||..|++++|.
T Consensus 254 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 280 (369)
T PRK14288 254 KREGCDLFIEAPVFFTTIALGHTIKVP 280 (369)
T ss_pred EEeCCEEEEEEecCHHHHhcCCEEEee
Confidence 357899999999999999999997775
No 105
>PRK14292 chaperone protein DnaJ; Provisional
Probab=67.51 E-value=5.3 Score=35.59 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+.+.||...+.|||.||+.|++++|.
T Consensus 258 ~r~g~dL~~~~~isl~eAl~G~~~~i~ 284 (371)
T PRK14292 258 RREQEHLIYEARIGFAKAALGGQITVP 284 (371)
T ss_pred ccchhceeEEeccCHHHHhCCCeEEEE
Confidence 457889999999999999999999988
No 106
>PRK14289 chaperone protein DnaJ; Provisional
Probab=66.56 E-value=5.6 Score=35.65 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=25.1
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+.+.|+..++.|||.||+.|+++.|..
T Consensus 274 ~r~g~DL~~~~~Isl~eAl~G~~~~i~~ 301 (386)
T PRK14289 274 IRDENDLIYNLLLSVPTAALGGAVEVPT 301 (386)
T ss_pred cccccceeEEeccCHHHHhCCCeEEeec
Confidence 3567899999999999999999998875
No 107
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=60.73 E-value=7.7 Score=35.36 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=24.3
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+.|.||.+++.|||.||..|.++.|.
T Consensus 270 ~R~G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 270 KREGGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred EEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence 357899999999999999999998776
No 108
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=59.93 E-value=31 Score=21.70 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+++..+..||+.+ ..+..+.|.+.|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGLS------VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777788888854 34577889999999998766555444
No 109
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.01 E-value=12 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=28.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 029075 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP 37 (199)
Q Consensus 6 Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~ 37 (199)
-+||+|+...+.++|-+.|..|-....+.|..
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 36999999999999999999999988877764
No 110
>PRK14296 chaperone protein DnaJ; Provisional
Probab=58.14 E-value=11 Score=33.56 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=22.5
Q ss_pred CCCeEEEEeeeHHHHhcCceEEEE
Q 029075 166 APPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 166 g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
+.||..++.|||.||..|+++.|.
T Consensus 273 G~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 273 NNDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred CCcEEEEEecCHHHHhCCCEEEee
Confidence 689999999999999999998876
No 111
>PRK14293 chaperone protein DnaJ; Provisional
Probab=57.63 E-value=8.6 Score=34.31 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.9
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEe
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKI 190 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~ 190 (199)
.+++.|+..+|.|||.||+.|++++|..
T Consensus 263 ~r~g~DL~~~~~Isl~eAl~G~~~~i~~ 290 (374)
T PRK14293 263 RRDGINILSEIKISYLQAILGDTLEVDT 290 (374)
T ss_pred ChhhhceEEEeccCHHHHhCCCEEEecC
Confidence 3568899999999999999999988875
No 112
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=56.79 E-value=13 Score=20.55 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 029075 16 KDDDLKKAYRKLAMKWHP 33 (199)
Q Consensus 16 ~~~eIkkayrkla~~~HP 33 (199)
..++.|.+.|+.|+.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788899999999993
No 113
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=56.08 E-value=33 Score=22.71 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+..|...++-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE------NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666677799754 23577889999999998887665554
No 114
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=55.94 E-value=6.9 Score=18.06 Aligned_cols=13 Identities=54% Similarity=0.910 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhcC
Q 029075 46 KFKQISEAYEVLS 58 (199)
Q Consensus 46 ~f~~i~~Ay~~Ls 58 (199)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888887764
No 115
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=53.93 E-value=41 Score=21.32 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 24 YRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 24 yrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 15 ~r~~~~~~~p~~~------~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDAS------VTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555566788744 346788899999999987766555543
No 116
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.16 E-value=69 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNP 37 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~ 37 (199)
|=++--.+-++.|-++.+||..|-.+.++|..=-..|
T Consensus 1 MCRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 1 MCRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred CCcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 4455566778999999999999988888887544443
No 117
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=50.31 E-value=49 Score=22.14 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 13 ~~~~r~~~~~~~p~~~------~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGLT------NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4566778888899864 33577889999999997766544444
No 118
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=48.85 E-value=39 Score=24.21 Aligned_cols=51 Identities=24% Similarity=0.588 Sum_probs=29.6
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh-hhc
Q 029075 10 GVDRNAKD-DDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD-QYG 70 (199)
Q Consensus 10 gv~~~a~~-~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd-~~g 70 (199)
|++|++.. .+|-+.++.++..+++. ..+.+..|.+.| +.||.-+..|| .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~--------~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG--------DPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 45555533 34666667776666661 124677777777 67888888888 544
No 119
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=45.02 E-value=28 Score=30.85 Aligned_cols=41 Identities=24% Similarity=0.416 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+..|+...+-.||-+ | .|+-|.|-+-|+.|++.+||-.+|.
T Consensus 75 q~~RRkma~qnP~mH--N----SEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH--N----SEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchh--h----HHHHHHHHHHHhhcCHhhhccHHHH
Confidence 456666677788876 2 2688999999999999999999884
No 120
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=41.19 E-value=66 Score=20.54 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.++...+..||+.. ..+.-+.|.+.|.-|++.++....+.
T Consensus 12 ~~~~~~~~k~~~p~~~------~~~i~~~~~~~W~~l~~~eK~~y~~~ 53 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS------NKEISKILAQMWKNLSEEEKAPYKEE 53 (69)
T ss_dssp HHHHHHHHHHHSTTST------HHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc------cccchhhHHHHHhcCCHHHHHHHHHH
Confidence 3445566667788766 34677889999999987765554443
No 121
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=37.49 E-value=99 Score=19.00 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHh-hhcCChhhhhhhhhh
Q 029075 19 DLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAY-EVLSDPQKRAVYDQY 69 (199)
Q Consensus 19 eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay-~~Lsd~~~R~~Yd~~ 69 (199)
+.+++|++|...+.-+.....=.++..++. -...| .++++..++.+|+.|
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~-~d~ry~~l~~~~~r~~lF~~~ 52 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLK-NDPRYKALLSESEREQLFEDH 52 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHh-cChHHHHhcChHHHHHHHHHH
Confidence 568899999766533321111123333333 23345 556666777777765
No 122
>COG2879 Uncharacterized small protein [Function unknown]
Probab=37.28 E-value=57 Score=21.78 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCCCCCChhHHHHHHHHHHH
Q 029075 24 YRKLAMKWHPDKNPNNKKDAETKFKQISE 52 (199)
Q Consensus 24 yrkla~~~HPDk~~~~~~~a~~~f~~i~~ 52 (199)
|-.-.++.|||+.+- .-++.|++-.+
T Consensus 28 YVehmr~~hPd~p~m---T~~EFfrec~d 53 (65)
T COG2879 28 YVEHMRKKHPDKPPM---TYEEFFRECQD 53 (65)
T ss_pred HHHHHHHhCcCCCcc---cHHHHHHHHHH
Confidence 334467789998863 34455554443
No 123
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=37.23 E-value=52 Score=20.10 Aligned_cols=48 Identities=15% Similarity=0.506 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCh-hHHHHHHHHHHHHhhhc--CChhhhhhhhhh
Q 029075 19 DLKKAYRKLAMKWHPDKNPNNK-KDAETKFKQISEAYEVL--SDPQKRAVYDQY 69 (199)
Q Consensus 19 eIkkayrkla~~~HPDk~~~~~-~~a~~~f~~i~~Ay~~L--sd~~~R~~Yd~~ 69 (199)
+.+.+|++|...+. .++... ..+...+. -...|..| ++..++.+|+.|
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~~~~~l~-~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEEVKPKLS-KDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHHHHHHHT-TSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHHHHHHHc-cCHHHHHhcCCHHHHHHHHHhC
Confidence 46889998877755 554321 12222221 12255555 556666666654
No 124
>smart00398 HMG high mobility group.
Probab=36.54 E-value=1.1e+02 Score=19.27 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
...|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 14 ~~~r~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~ek~~y~~~a 55 (70)
T smart00398 14 QENRAKIKAENPDLS------NAEISKKLGERWKLLSEEEKAPYEEKA 55 (70)
T ss_pred HHHHHHHHHHCcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566688755 335677899999999977766555543
No 125
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=33.11 E-value=28 Score=29.68 Aligned_cols=13 Identities=38% Similarity=0.818 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhc
Q 029075 45 TKFKQISEAYEVL 57 (199)
Q Consensus 45 ~~f~~i~~Ay~~L 57 (199)
.++++||||+|+|
T Consensus 128 RRLkKVNEAFE~L 140 (284)
T KOG3960|consen 128 RRLKKVNEAFETL 140 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999998
No 126
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=29.98 E-value=81 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.539 Sum_probs=18.2
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029075 5 YYKILGVDRNAKDDDLKKAYRKLAMKWHPDKN 36 (199)
Q Consensus 5 ~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~ 36 (199)
||+||.++.- +. |=|..|-+ .+|-||+..
T Consensus 13 FY~vl~~~nL-te-eQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 13 FYEVLHMPNL-TE-EQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHCSTTS--H-HHHHHHHH-HHHH-GCCH
T ss_pred HHHHHcCCCc-CH-HHHHhHHH-HHhhChHHH
Confidence 7999988643 33 33666766 466788765
No 127
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=26.57 E-value=44 Score=29.26 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=36.8
Q ss_pred CcccccCCCC-CCCHHHHHHHHHHHHHHh-------CCCCCC--CChhHHHHHHHHHHHHhhhcCC
Q 029075 4 DYYKILGVDR-NAKDDDLKKAYRKLAMKW-------HPDKNP--NNKKDAETKFKQISEAYEVLSD 59 (199)
Q Consensus 4 d~Y~iLgv~~-~a~~~eIkkayrkla~~~-------HPDk~~--~~~~~a~~~f~~i~~Ay~~Lsd 59 (199)
++++-|+|+. ..+.+|+++-.+.++.+. ++|.+. ..+..-++.++++.++|+.|.+
T Consensus 83 pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 83 PLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred CHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 4567799998 789999888777665543 333221 0011346788889999988764
No 128
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=56 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=13.4
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 029075 8 ILGVDRNAKDDDLKKAYRKL 27 (199)
Q Consensus 8 iLgv~~~a~~~eIkkayrkl 27 (199)
++-|++.|+..+||+|..+|
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 34566777777777776665
No 129
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.75 E-value=52 Score=20.52 Aligned_cols=22 Identities=5% Similarity=0.338 Sum_probs=17.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHH
Q 029075 8 ILGVDRNAKDDDLKKAYRKLAM 29 (199)
Q Consensus 8 iLgv~~~a~~~eIkkayrkla~ 29 (199)
|-+|+++++.++|++.+.+...
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~ 24 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGK 24 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTST
T ss_pred EcCCCCcCCHHHHHHHHHHhhh
Confidence 4578999999999988887543
No 130
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=23.87 E-value=1.7e+02 Score=20.34 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
+-+......||-++| .+..+..---+|-+|+||.++-..+
T Consensus 22 ~~f~h~Ln~Y~~~Rn---------V~~Lv~sL~~vLd~P~KrqllplLr 61 (78)
T cd07356 22 EEFIHCLNDYHAKRN---------VYDLVQSLKVVLDTPEKRQLLPLLR 61 (78)
T ss_pred HHHHHHHHHHHhccc---------HHHHHHHHHHHhCCHhHhHHHHHHH
Confidence 334444556777777 3445566667888999999987654
No 131
>PTZ00199 high mobility group protein; Provisional
Probab=23.81 E-value=1.7e+02 Score=20.52 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 24 YRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 24 yrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.|...+.-||+... ...+..+.|.+-|..|++.++...++.
T Consensus 37 ~R~~i~~~~P~~~~----~~~evsk~ige~Wk~ls~eeK~~y~~~ 77 (94)
T PTZ00199 37 KRAEIIAENPELAK----DVAAVGKMVGEAWNKLSEEEKAPYEKK 77 (94)
T ss_pred HHHHHHHHCcCCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555667887642 234567889999999997776555554
No 132
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.62 E-value=1.3e+02 Score=18.90 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=19.7
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHH
Q 029075 6 YKILGVDRNAKDDDLKKAYRKLAM 29 (199)
Q Consensus 6 Y~iLgv~~~a~~~eIkkayrkla~ 29 (199)
+.+=|+.|..+++|.|+.-|+-.+
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 567789999999999998887544
No 133
>CHL00030 rpl23 ribosomal protein L23
Probab=22.79 E-value=68 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.1
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 029075 9 LGVDRNAKDDDLKKAYRKL 27 (199)
Q Consensus 9 Lgv~~~a~~~eIkkayrkl 27 (199)
+-|++.|+..|||+|..++
T Consensus 24 F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 24 FDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEECCCCCHHHHHHHHHHH
Confidence 4578888888888888776
No 134
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=22.70 E-value=83 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=24.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKN 36 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~ 36 (199)
.+|.||-++..+|..+|-+.=-..|++.+||-+
T Consensus 12 qP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 12 QPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 579999999999988866555555666677754
No 135
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.11 E-value=38 Score=21.68 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=12.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 029075 8 ILGVDRNAKDDDLKKAYRKLA 28 (199)
Q Consensus 8 iLgv~~~a~~~eIkkayrkla 28 (199)
.|||++.+-..-||+|-+++.
T Consensus 32 ~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 32 ELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HhCCCHHHHHHHHHHHHHHHh
Confidence 356666665666666666653
No 136
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=21.88 E-value=3.2e+02 Score=21.56 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHH-----------HHHHhCCCCC
Q 029075 13 RNAKDDDLKKAYRK-----------LAMKWHPDKN 36 (199)
Q Consensus 13 ~~a~~~eIkkayrk-----------la~~~HPDk~ 36 (199)
|-++.+++..+..+ -++..|||..
T Consensus 41 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg 75 (166)
T PRK13798 41 PFADHDALLAAADEALAGLSEADIDEALAGHPRIG 75 (166)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCccc
Confidence 34555555555543 3567899975
No 137
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.87 E-value=1e+02 Score=24.22 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhhcCChhhhhh
Q 029075 41 KDAETKFKQISEAYEVLSDPQKRAV 65 (199)
Q Consensus 41 ~~a~~~f~~i~~Ay~~Lsd~~~R~~ 65 (199)
++...+...|.++.++|.||.+++.
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 4677789999999999999987654
No 138
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=1.3e+02 Score=22.93 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhC-CCCCCCChhHHHHHHHHHHHHhhhcCChhhhh
Q 029075 16 KDDDLKKAYRKLAMKWH-PDKNPNNKKDAETKFKQISEAYEVLSDPQKRA 64 (199)
Q Consensus 16 ~~~eIkkayrkla~~~H-PDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~ 64 (199)
-+.++.+||+.+.++.| |++. ...+.-+.||-...|...-.
T Consensus 49 aDa~LN~AY~~ll~~l~~~~~~--------~aL~kaQRAWi~fRDadC~~ 90 (127)
T COG3755 49 ADAELNKAYKALLKRLQDSPRT--------KALQKAQRAWIAFRDADCAL 90 (127)
T ss_pred HHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHHHHHhhHhHHH
Confidence 35778999999988777 5433 15777788888877766543
No 139
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=21.06 E-value=47 Score=28.84 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 14 NAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 14 ~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
......|++||.-+.. .||++++. ... +|..+-.-|+++.+...+..++.+
T Consensus 36 ~~~~k~i~ka~~i~~~-~~~~~t~~---~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 36 EEEFKKIEKALAILDD-DEPRRTPD---SWD-KFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred HHHHHHHHHHHHHHhc-cccccchh---hhh-HHHhcCccccccchhHHhhhhhHH
Confidence 3445779999999988 89998863 233 555555555777777777776655
No 140
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=20.93 E-value=1.7e+02 Score=25.68 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCC-------------------------CChhHHHHHHHHHHHHhhhcCChhhh
Q 029075 11 VDRNAKDDDLKKAYRKLAMKWHPDKNP-------------------------NNKKDAETKFKQISEAYEVLSDPQKR 63 (199)
Q Consensus 11 v~~~a~~~eIkkayrkla~~~HPDk~~-------------------------~~~~~a~~~f~~i~~Ay~~Lsd~~~R 63 (199)
+++..+.+||-+|.+-.--.+|||... .....+.-.++.+|++|..+=|-..|
T Consensus 44 ~~~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nr 121 (308)
T PF03820_consen 44 VPPGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNR 121 (308)
T ss_pred CCCCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhcc
Confidence 344568999999999998999999621 01112444578899999887544333
No 141
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.22 E-value=3.7e+02 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHH-----------HHHHhCCCCC
Q 029075 13 RNAKDDDLKKAYRK-----------LAMKWHPDKN 36 (199)
Q Consensus 13 ~~a~~~eIkkayrk-----------la~~~HPDk~ 36 (199)
|-++.+++..+... -++..|||..
T Consensus 31 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg 65 (158)
T TIGR03180 31 PFASAEALLAAADQAWQNLSEQDLFEALAGHPRIG 65 (158)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCccc
Confidence 34455555555543 3567899975
Done!