Query 029075
Match_columns 199
No_of_seqs 231 out of 2268
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 3.4E-31 1.2E-35 229.8 4.3 146 3-199 28-173 (329)
2 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.8E-25 9.7E-30 154.1 8.0 74 1-76 1-74 (77)
3 1bq0_A DNAJ, HSP40; chaperone, 99.9 2.1E-25 7E-30 163.2 6.1 75 1-76 1-75 (103)
4 2ej7_A HCG3 gene; HCG3 protein 99.9 1.3E-24 4.3E-29 152.5 7.0 72 3-74 9-80 (82)
5 2o37_A Protein SIS1; HSP40, J- 99.9 2.2E-24 7.6E-29 154.6 6.7 72 2-77 7-78 (92)
6 2lgw_A DNAJ homolog subfamily 99.9 1.9E-24 6.7E-29 157.1 6.2 74 3-76 2-75 (99)
7 2dn9_A DNAJ homolog subfamily 99.9 3.5E-24 1.2E-28 149.2 6.4 71 2-73 6-76 (79)
8 2dmx_A DNAJ homolog subfamily 99.9 4.5E-24 1.5E-28 152.9 7.0 73 3-75 9-81 (92)
9 2ctr_A DNAJ homolog subfamily 99.9 1.1E-23 3.8E-28 149.8 7.8 73 2-76 6-78 (88)
10 2ctp_A DNAJ homolog subfamily 99.9 1.3E-23 4.5E-28 146.0 6.6 70 2-73 6-75 (78)
11 2cug_A Mkiaa0962 protein; DNAJ 99.9 1.1E-23 3.9E-28 149.7 6.3 70 2-73 16-85 (88)
12 2och_A Hypothetical protein DN 99.9 3.2E-23 1.1E-27 142.4 6.8 67 2-72 7-73 (73)
13 2yua_A Williams-beuren syndrom 99.9 5.5E-23 1.9E-27 149.3 7.3 68 2-70 16-83 (99)
14 2ctw_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 152.4 6.8 73 2-75 16-88 (109)
15 2ctq_A DNAJ homolog subfamily 99.9 3E-23 1E-27 153.9 5.8 72 2-74 19-90 (112)
16 1wjz_A 1700030A21RIK protein; 99.9 1.7E-22 5.8E-27 145.0 5.3 70 2-71 15-89 (94)
17 3apq_A DNAJ homolog subfamily 99.8 2.5E-21 8.7E-26 156.2 6.2 73 3-76 2-74 (210)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.5E-21 5E-26 144.0 4.1 70 2-71 14-86 (109)
19 2l6l_A DNAJ homolog subfamily 99.8 1.7E-20 5.8E-25 146.3 6.6 70 2-71 9-83 (155)
20 2ys8_A RAB-related GTP-binding 99.8 1.2E-20 4.1E-25 134.7 4.4 62 2-65 26-87 (90)
21 1iur_A KIAA0730 protein; DNAJ 99.8 1.8E-20 6.3E-25 133.2 1.6 61 3-63 16-76 (88)
22 1gh6_A Large T antigen; tumor 99.8 9E-21 3.1E-25 141.0 -0.2 66 3-73 8-75 (114)
23 1fpo_A HSC20, chaperone protei 99.8 2E-19 6.8E-24 142.6 4.6 68 3-70 1-74 (171)
24 1faf_A Large T antigen; J doma 99.8 1.4E-19 4.9E-24 126.2 3.0 64 3-72 11-76 (79)
25 2pf4_E Small T antigen; PP2A, 99.8 4.8E-20 1.6E-24 146.1 0.2 65 3-72 11-77 (174)
26 3hho_A CO-chaperone protein HS 99.8 4.2E-19 1.4E-23 141.1 5.4 69 2-70 3-77 (174)
27 1n4c_A Auxilin; four helix bun 99.8 2.2E-19 7.5E-24 143.2 3.0 64 3-66 117-182 (182)
28 3bvo_A CO-chaperone protein HS 99.7 9.3E-19 3.2E-23 142.6 5.4 68 2-69 42-115 (207)
29 2qwo_B Putative tyrosine-prote 99.7 3.7E-19 1.3E-23 127.3 2.4 57 3-59 33-91 (92)
30 3ag7_A Putative uncharacterize 99.7 1E-18 3.5E-23 128.3 2.0 59 2-61 40-104 (106)
31 3apo_A DNAJ homolog subfamily 99.7 1.2E-18 4.2E-23 164.6 0.0 75 2-77 20-94 (780)
32 3uo3_A J-type CO-chaperone JAC 99.7 5.7E-18 1.9E-22 135.3 2.7 65 2-70 10-81 (181)
33 2guz_A Mitochondrial import in 99.7 6.9E-18 2.3E-22 115.2 1.4 56 3-63 14-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.3 1.9E-12 6.7E-17 111.4 5.3 66 3-68 382-449 (450)
35 2guz_B Mitochondrial import in 98.9 4.7E-10 1.6E-14 74.9 3.5 50 5-59 6-58 (65)
36 3i38_A Putative chaperone DNAJ 92.0 0.072 2.5E-06 38.3 2.2 27 163-189 8-34 (109)
37 1c3g_A Heat shock protein 40; 81.1 0.74 2.5E-05 35.3 2.2 27 163-189 83-109 (170)
38 3agx_A DNAJ homolog subfamily 79.8 0.98 3.4E-05 35.0 2.5 27 163-189 89-115 (181)
39 2q2g_A HSP40 protein, heat sho 79.8 0.99 3.4E-05 35.0 2.5 27 163-189 89-115 (180)
40 1nlt_A Protein YDJ1, mitochond 71.2 1.9 6.4E-05 35.1 2.1 27 163-189 158-184 (248)
41 3lz8_A Putative chaperone DNAJ 66.1 2.8 9.4E-05 35.7 2.2 27 163-189 228-254 (329)
42 2cqn_A Formin-binding protein 65.8 13 0.00043 24.7 5.0 55 16-71 7-63 (77)
43 4a3n_A Transcription factor SO 59.4 18 0.00062 22.6 4.8 42 21-68 14-55 (71)
44 1i11_A Transcription factor SO 58.2 26 0.00087 22.7 5.6 42 21-68 16-57 (81)
45 1uzc_A Hypothetical protein FL 57.6 28 0.00096 22.6 5.5 54 14-71 11-67 (71)
46 2crj_A SWI/SNF-related matrix- 54.7 30 0.001 23.1 5.5 42 21-68 19-60 (92)
47 3f27_D Transcription factor SO 52.2 29 0.001 22.5 5.1 42 21-68 18-59 (83)
48 2cs1_A PMS1 protein homolog 1; 51.2 28 0.00095 23.3 4.9 42 21-68 19-60 (92)
49 2b7e_A PRE-mRNA processing pro 50.9 19 0.00066 22.7 3.7 49 18-70 3-56 (59)
50 1hme_A High mobility group pro 49.1 44 0.0015 21.2 5.5 42 21-68 18-59 (77)
51 3nm9_A HMG-D, high mobility gr 48.9 35 0.0012 21.6 4.9 39 21-68 15-53 (73)
52 1wgf_A Upstream binding factor 48.3 27 0.00091 23.3 4.4 43 21-69 32-74 (90)
53 1gt0_D Transcription factor SO 47.6 34 0.0012 22.0 4.8 42 21-68 14-55 (80)
54 1hry_A Human SRY; DNA, DNA-bin 47.1 39 0.0013 21.4 5.0 42 21-68 16-57 (76)
55 4euw_A Transcription factor SO 47.0 37 0.0013 23.4 5.1 43 20-68 40-82 (106)
56 1wz6_A HMG-box transcription f 46.4 40 0.0014 21.8 5.0 42 21-68 19-60 (82)
57 3u2b_C Transcription factor SO 46.0 38 0.0013 21.6 4.8 42 21-68 14-55 (79)
58 2e6o_A HMG box-containing prot 45.4 34 0.0012 22.5 4.6 42 21-68 29-70 (87)
59 1j46_A SRY, sex-determining re 45.3 43 0.0015 21.9 5.1 42 21-68 16-57 (85)
60 2d7l_A WD repeat and HMG-box D 45.2 35 0.0012 22.5 4.6 44 21-69 17-60 (81)
61 1ckt_A High mobility group 1 p 45.0 41 0.0014 21.0 4.8 42 23-68 15-56 (71)
62 2co9_A Thymus high mobility gr 44.8 40 0.0014 23.0 5.0 42 21-68 29-70 (102)
63 2lef_A LEF-1 HMG, protein (lym 44.5 46 0.0016 21.7 5.1 42 21-68 14-55 (86)
64 2eqz_A High mobility group pro 40.9 40 0.0014 22.1 4.4 44 21-68 27-70 (86)
65 1k99_A Upstream binding factor 35.1 58 0.002 22.1 4.6 43 21-69 22-64 (99)
66 1qqr_A Streptokinase domain B; 33.6 22 0.00076 26.3 2.2 29 6-34 35-63 (138)
67 2dod_A Transcription elongatio 32.7 1E+02 0.0035 20.5 5.3 55 14-72 13-69 (82)
68 1ny9_A Transcriptional activat 30.5 1E+02 0.0035 22.0 5.5 24 45-70 100-123 (143)
69 3tmm_A Transcription factor A, 27.6 85 0.0029 24.9 5.0 41 22-68 54-94 (238)
70 3tq6_A Transcription factor A, 27.4 90 0.0031 24.3 5.0 42 21-68 21-62 (214)
71 3pmq_A Decaheme cytochrome C M 26.3 3.2 0.00011 38.7 -4.3 27 170-196 168-194 (669)
72 1aab_A High mobility group pro 26.3 59 0.002 21.0 3.2 43 22-68 20-62 (83)
73 2gzk_A Sex-determining region 25.9 1.1E+02 0.0039 22.1 5.1 39 24-68 19-57 (159)
74 2yrq_A High mobility group pro 24.5 1.4E+02 0.0047 22.1 5.4 40 22-67 114-153 (173)
75 2yrq_A High mobility group pro 23.9 99 0.0034 22.9 4.5 43 21-67 27-69 (173)
76 2pk2_A Cyclin-T1, protein TAT; 23.8 1.3E+02 0.0045 25.3 5.7 26 4-31 220-245 (358)
77 2lxi_A RNA-binding protein 10; 21.1 65 0.0022 21.0 2.6 20 8-27 6-25 (91)
78 2gzk_A Sex-determining region 21.0 1.5E+02 0.0053 21.4 5.0 41 21-67 100-140 (159)
79 1vq8_S 50S ribosomal protein L 20.6 51 0.0017 22.2 1.9 21 8-28 26-46 (85)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.96 E-value=3.4e-31 Score=229.77 Aligned_cols=146 Identities=34% Similarity=0.523 Sum_probs=33.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCCCCCCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQMPPPD 82 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~~~~~~ 82 (199)
+|||+||||+++|+.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||+++...... +
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~-----~ 100 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE--NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDP-----G 100 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC--hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCC-----C
Confidence 699999999999999999999999999999999974 378899999999999999999999999985432110 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029075 83 AGGPGGASFFSTGEGPTSFRFNPRSADDIFAEFFGFSHPFGGMGGGGGGMRGSRFAGGLFGDDMFGPFGEGGGGSMGGGG 162 (199)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~f~~~~~~d~f~~~fg~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (199)
+++ .+.... . .|...+++|||+.|||+. + + ++. ...
T Consensus 101 ---~~~--~~~~~~--~--~f~~~~f~diF~~~Fg~~----g------~-~~~------------------------~~~ 136 (329)
T 3lz8_A 101 ---FGR--QRQTHE--Q--SYSQQDFDDIFSSMFGQQ----A------H-QRR------------------------RQH 136 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccc--cccccc--C--CcCCCchhhhhHhhhcCc----C------C-CCC------------------------CCC
Confidence 000 000000 0 111224578888888721 0 0 000 012
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEEeeeeeecCCC
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMKISREIADISG 199 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~~~r~v~~~~~ 199 (199)
+++++|++++|.|||||+|+||+++|++++.+.|..|
T Consensus 137 ~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G 173 (329)
T 3lz8_A 137 AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFG 173 (329)
T ss_dssp CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC
T ss_pred cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCe
Confidence 4689999999999999999999999999998876543
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.92 E-value=2.8e-25 Score=154.12 Aligned_cols=74 Identities=61% Similarity=1.135 Sum_probs=69.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 76 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~ 76 (199)
|+.|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||++|++++.+
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 88999999999999999999999999999999999974 468899999999999999999999999999887653
No 3
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.91 E-value=2.1e-25 Score=163.18 Aligned_cols=75 Identities=56% Similarity=1.008 Sum_probs=69.6
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccC
Q 029075 1 MGVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 76 (199)
Q Consensus 1 m~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~ 76 (199)
|..|||+||||+++++.++||+|||+|+++||||+++.. ++++++|++|++||++|+||.+|..||++|++++..
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 778999999999999999999999999999999999754 468899999999999999999999999999887653
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=152.48 Aligned_cols=72 Identities=63% Similarity=1.101 Sum_probs=67.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccc
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGL 74 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~ 74 (199)
.|||+||||+++++.++||+|||+|+++||||+++...+.+.++|++|++||++|+||.+|..||++|+.++
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 699999999999999999999999999999999987666889999999999999999999999999987654
No 5
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.2e-24 Score=154.64 Aligned_cols=72 Identities=51% Similarity=0.914 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQ 77 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~ 77 (199)
..|||+||||+++++.++||+|||+|+++||||+++.. .++|++|++||++|+||.+|..||+++++++...
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 56899999999999999999999999999999999754 3599999999999999999999999999887754
No 6
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.90 E-value=1.9e-24 Score=157.08 Aligned_cols=74 Identities=64% Similarity=1.117 Sum_probs=67.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 76 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~ 76 (199)
.|||+||||+++++.++||+|||+|+++||||+++...+.+.++|++|++||++|+||.+|..||.+|.+++.+
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 79999999999999999999999999999999998766678999999999999999999999999999877653
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=3.5e-24 Score=149.19 Aligned_cols=71 Identities=55% Similarity=0.888 Sum_probs=65.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~ 73 (199)
..|||+||||+++++.++||+|||+|+++||||+++.. +++.++|++|++||++|+||.+|..||.+|..+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 47999999999999999999999999999999999754 468899999999999999999999999998654
No 8
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=152.89 Aligned_cols=73 Identities=59% Similarity=1.068 Sum_probs=68.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccccc
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLK 75 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~ 75 (199)
.|||+||||+++++.++||+|||+|+++||||+++...+.++++|++|++||++|+||.+|..||++|..++.
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 6899999999999999999999999999999999866668899999999999999999999999999987654
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=149.76 Aligned_cols=73 Identities=51% Similarity=0.876 Sum_probs=68.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 76 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~ 76 (199)
..|||+||||+++++.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||.+++.++..
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 4699999999999999999999999999999999973 578999999999999999999999999999887754
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=145.99 Aligned_cols=70 Identities=59% Similarity=0.963 Sum_probs=65.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~ 73 (199)
..|||+||||+++++.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||++|+++
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999964 578899999999999999999999999998764
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=1.1e-23 Score=149.70 Aligned_cols=70 Identities=54% Similarity=0.938 Sum_probs=65.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~ 73 (199)
..|||+||||+++++.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|..||++|+.+
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS--TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 5799999999999999999999999999999999974 468899999999999999999999999998653
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=3.2e-23 Score=142.36 Aligned_cols=67 Identities=63% Similarity=1.055 Sum_probs=61.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEE 72 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~ 72 (199)
..|||+||||+++++.++||+|||+|++++|||+++.. .++|++|++||++|+||.+|..||++|++
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999743 47899999999999999999999999863
No 13
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.5e-23 Score=149.27 Aligned_cols=68 Identities=34% Similarity=0.587 Sum_probs=63.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
..|||+||||+++|+.++||+|||+|+++||||+++.+ +.+.++|++|++||+||+||.+|..||+..
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 46899999999999999999999999999999999754 578899999999999999999999999853
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=4.3e-23 Score=152.37 Aligned_cols=73 Identities=55% Similarity=0.996 Sum_probs=67.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLK 75 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~ 75 (199)
..|||+||||+++|+.++||+|||+|++++|||+++.. +++.++|++|++||++|+||.+|..||++|..++.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 57999999999999999999999999999999999854 57889999999999999999999999999987653
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3e-23 Score=153.87 Aligned_cols=72 Identities=31% Similarity=0.622 Sum_probs=66.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGL 74 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~ 74 (199)
..|||+||||+++|+.++||+|||+|+++||||+++.+ +.+.++|++|++||++|+||.+|..||+++..++
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 37999999999999999999999999999999999854 4689999999999999999999999999997654
No 16
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.86 E-value=1.7e-22 Score=145.00 Aligned_cols=70 Identities=34% Similarity=0.651 Sum_probs=63.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hhHHHHHHHHHHHHhhhcCChhhhhhhhhhcc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNN-----KKDAETKFKQISEAYEVLSDPQKRAVYDQYGE 71 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~-----~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~ 71 (199)
..|||+||||+++++.+|||+|||+|+++||||+++.+ .+.+.++|++|++||++|+||.+|..||.+..
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 36999999999999999999999999999999998732 25688999999999999999999999999753
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.83 E-value=2.5e-21 Score=156.22 Aligned_cols=73 Identities=48% Similarity=0.911 Sum_probs=67.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKG 76 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~ 76 (199)
.|||+||||+++|+.++||+|||+|++++|||+++.. +++.++|++|++||++|+||.+|+.||++|+.++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 6999999999999999999999999999999999755 478899999999999999999999999999876543
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.83 E-value=1.5e-21 Score=143.98 Aligned_cols=70 Identities=41% Similarity=0.643 Sum_probs=64.3
Q ss_pred CCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC--ChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcc
Q 029075 2 GVDYYKILGVDRNA-KDDDLKKAYRKLAMKWHPDKNPN--NKKDAETKFKQISEAYEVLSDPQKRAVYDQYGE 71 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a-~~~eIkkayrkla~~~HPDk~~~--~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~ 71 (199)
..|||+||||+++| +.++||+|||+|++++|||+++. ..+.+.++|++|++||++|+||.+|..||+++.
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 47999999999999 99999999999999999999864 235688999999999999999999999999874
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=146.29 Aligned_cols=70 Identities=34% Similarity=0.637 Sum_probs=63.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----hHHHHHHHHHHHHhhhcCChhhhhhhhhhcc
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNK-----KDAETKFKQISEAYEVLSDPQKRAVYDQYGE 71 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~-----~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~ 71 (199)
..|||+||||+++++.++||+|||+|++++|||+++... +.+.++|+.|++||++|+||.+|+.||..+.
T Consensus 9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 468999999999999999999999999999999987542 2477899999999999999999999998764
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=134.65 Aligned_cols=62 Identities=37% Similarity=0.526 Sum_probs=57.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhh
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAV 65 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~ 65 (199)
..|||+||||+++++.+|||+|||+|+++||||+++. +.+.++|++|++||++|+|+.+|..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC--TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCcccccC
Confidence 4799999999999999999999999999999999974 4688899999999999999998753
No 21
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.78 E-value=1.8e-20 Score=133.24 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=57.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R 63 (199)
.++|+||||+++|+.+|||+|||+|+++||||+++.+.+.++++|++|++||++|+|...|
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 4789999999999999999999999999999999876667899999999999999998766
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.78 E-value=9e-21 Score=140.99 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=60.6
Q ss_pred CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhcccc
Q 029075 3 VDYYKILGVDRNAKD--DDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEG 73 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~--~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~ 73 (199)
.+||+||||+++++. ++||+|||+|++++|||+++. .++|++|++||+||+||.+|+.||.+|..+
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~~~~~~~~w 75 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW 75 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHHhhhccccc
Confidence 579999999999999 999999999999999999974 368999999999999999999999987543
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.76 E-value=2e-19 Score=142.59 Aligned_cols=68 Identities=25% Similarity=0.449 Sum_probs=61.6
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 3 VDYYKILGVDRNA--KDDDLKKAYRKLAMKWHPDKNPNNKK----DAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 3 ~d~Y~iLgv~~~a--~~~eIkkayrkla~~~HPDk~~~~~~----~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
+|||+||||++++ +..+||++||+|+++||||+++...+ .+.++|+.|++||+||+||.+|..||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3899999999999 99999999999999999999875432 36689999999999999999999999864
No 24
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.76 E-value=1.4e-19 Score=126.16 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=56.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccc
Q 029075 3 VDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEE 72 (199)
Q Consensus 3 ~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~ 72 (199)
.++|+||||+++ ++.++||+|||+|++++|||+++. .++|++|++||++|+|+.+|.. +.||..
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence 368999999999 999999999999999999999852 3689999999999999998887 456643
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.76 E-value=4.8e-20 Score=146.14 Aligned_cols=65 Identities=29% Similarity=0.476 Sum_probs=57.6
Q ss_pred CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccc
Q 029075 3 VDYYKILGVDRNAK--DDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEE 72 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~--~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~ 72 (199)
.|||+||||+++|+ .+|||+|||+||+++|||++++. ++|++|++||++|+||.+|+.||++|..
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~-----e~F~~I~~AYevLsdp~kR~~YD~~G~~ 77 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE-----EKMKKMNTLYKKMEDGVKYAHQPDFGGF 77 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC-----TTTTHHHHHHHHHHHHHHHHTSCGGGGC
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHhccCCc
Confidence 47999999999998 69999999999999999998642 6899999999999999999999999963
No 26
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.76 E-value=4.2e-19 Score=141.07 Aligned_cols=69 Identities=28% Similarity=0.492 Sum_probs=61.5
Q ss_pred CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChh----HHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 2 GVDYYKILGVDRNAK--DDDLKKAYRKLAMKWHPDKNPNNKK----DAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~--~~eIkkayrkla~~~HPDk~~~~~~----~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
..|||+||||+++++ .++||+|||+|+++||||+++.... .+.++|+.|++||++|+||.+|..||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 469999999999988 9999999999999999999875432 27789999999999999999999999854
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.75 E-value=2.2e-19 Score=143.23 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=58.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChh--HHHHHHHHHHHHhhhcCChhhhhhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKK--DAETKFKQISEAYEVLSDPQKRAVY 66 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~--~a~~~f~~i~~Ay~~Lsd~~~R~~Y 66 (199)
.|||+||||++.|+.++||+|||+|+++|||||++.... .|+++|++|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999875432 3889999999999999999999887
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.74 E-value=9.3e-19 Score=142.62 Aligned_cols=68 Identities=24% Similarity=0.423 Sum_probs=60.4
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh----hHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 2 GVDYYKILGVDRN--AKDDDLKKAYRKLAMKWHPDKNPNNK----KDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 2 ~~d~Y~iLgv~~~--a~~~eIkkayrkla~~~HPDk~~~~~----~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
..|||+||||+++ ++.++||++||+|+++||||+++... ..+.++|+.|++||+||+||.+|..||..
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3699999999996 78999999999999999999987542 23678899999999999999999999963
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.74 E-value=3.7e-19 Score=127.28 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=51.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--hHHHHHHHHHHHHhhhcCC
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNK--KDAETKFKQISEAYEVLSD 59 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~--~~a~~~f~~i~~Ay~~Lsd 59 (199)
.++|++|||++.|+.+|||+|||+|+++||||+++... ..|+++|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999998543 2488999999999999964
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.72 E-value=1e-18 Score=128.28 Aligned_cols=59 Identities=24% Similarity=0.404 Sum_probs=51.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---hhHHHHHHHHHHHHhhhcCChh
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPN---N---KKDAETKFKQISEAYEVLSDPQ 61 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~---~---~~~a~~~f~~i~~Ay~~Lsd~~ 61 (199)
+.|||+||+++. |+.++||+|||+|+++|||||++. . ...|+++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 999999999999999999999863 1 1247889999999999999985
No 31
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.70 E-value=1.2e-18 Score=164.58 Aligned_cols=75 Identities=47% Similarity=0.891 Sum_probs=40.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhccccccCC
Q 029075 2 GVDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGQ 77 (199)
Q Consensus 2 ~~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g~~~~~~~ 77 (199)
+.|||+||||+++|+.+|||+|||+|+++||||+++.. +.+.++|++|++||++|+||.+|+.||++|+.++...
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 57999999999999999999999999999999999754 5788999999999999999999999999998877543
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.69 E-value=5.7e-18 Score=135.34 Aligned_cols=65 Identities=25% Similarity=0.485 Sum_probs=58.8
Q ss_pred CCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 2 GVDYYKIL------GVDR-NAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 2 ~~d~Y~iL------gv~~-~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
..|||+|| ++++ +++.++||+|||+|+++||||+++. +.++|+.|++||++|+||.+|..||...
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 36999999 5765 8999999999999999999999974 5678999999999999999999999854
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.9e-18 Score=115.22 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhh
Q 029075 3 VDYYKILGVDR-NAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKR 63 (199)
Q Consensus 3 ~d~Y~iLgv~~-~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R 63 (199)
.++|+||||++ +++.++||+|||+|++++|||++.. .++|++|++||++|+++..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence 37899999999 7999999999999999999999742 25899999999999998765
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=1.9e-12 Score=111.37 Aligned_cols=66 Identities=59% Similarity=0.959 Sum_probs=56.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--hHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 3 VDYYKILGVDRNAKDDDLKKAYRKLAMKWHPDKNPNNK--KDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 3 ~d~Y~iLgv~~~a~~~eIkkayrkla~~~HPDk~~~~~--~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.++|++||+.+.++.++|+++|+++++++|||+.+... +.++++|++|++||++|+|+++|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 48999999999999999999999999999999987543 5688999999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.7e-10 Score=74.88 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.0
Q ss_pred cccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCC
Q 029075 5 YYKILGVDRN---AKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSD 59 (199)
Q Consensus 5 ~Y~iLgv~~~---a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd 59 (199)
-|+||||++. ++.++|+++||+|...+|||+.... -....|++|+++|..
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~-----yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF-----YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH-----HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHHHH
Confidence 5789999999 9999999999999999999997421 356679999998854
No 36
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=92.00 E-value=0.072 Score=38.25 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.++|.|+.+++.|||.||+.|++++|.
T Consensus 8 ~R~G~DL~~~~~Isl~eAl~G~~i~v~ 34 (109)
T 3i38_A 8 DIVGHNLEIVLPLAPWEAALGAKVTVP 34 (109)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred EEECCEEEEEEEcCHHHHhCCCEEEEE
Confidence 357899999999999999999998875
No 37
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=81.10 E-value=0.74 Score=35.32 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+.+++.|||.||..|+++.|.
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~ 109 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQ 109 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEE
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEee
Confidence 357899999999999999999988876
No 38
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=79.80 E-value=0.98 Score=35.03 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.|+..++.|||.||..|+++.|.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 115 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVP 115 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeE
Confidence 467899999999999999999988776
No 39
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=79.76 E-value=0.99 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+.+.|+..++.|||.||..|+++.|.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 115 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVT 115 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEee
Confidence 467899999999999999999988775
No 40
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=71.24 E-value=1.9 Score=35.11 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+++.||.+++.|||.||..|++..|.
T Consensus 158 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 184 (248)
T 1nlt_A 158 KRDGDDLVYEAEIDLLTAIAGGEFALE 184 (248)
T ss_dssp EEETTEEEEEEEEEHHHHHHCBCCEEE
T ss_pred eeeCCEEEEEEEeCHHHHhcCCEEEEe
Confidence 467899999999999999999988876
No 41
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=66.06 E-value=2.8 Score=35.65 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEeeeHHHHhcCceEEEE
Q 029075 163 ARKAPPIENKLPCSLEDLYKGTTKKMK 189 (199)
Q Consensus 163 ~~~g~di~~~l~vtLee~~~G~~k~l~ 189 (199)
.+.|.||.+++.|||.||..|+++.|.
T Consensus 228 ~R~G~DL~~~~~Isl~eAllG~~v~Vp 254 (329)
T 3lz8_A 228 DIVGHNLEIVLPLAPWEAALGAKVTVP 254 (329)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred EEcCCcEEEEEECCHHHHcCCCeEEEE
Confidence 357899999999999999999998774
No 42
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=65.80 E-value=13 Score=24.73 Aligned_cols=55 Identities=11% Similarity=0.270 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCC-hhHHHHHHHHHHHHhhhcCC-hhhhhhhhhhcc
Q 029075 16 KDDDLKKAYRKLAMKWHPDKNPNN-KKDAETKFKQISEAYEVLSD-PQKRAVYDQYGE 71 (199)
Q Consensus 16 ~~~eIkkayrkla~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~Lsd-~~~R~~Yd~~g~ 71 (199)
-...++.+++.+.+...|...... =+++..+|.... +|..|.+ ..++.+|+.|-.
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHHH
Confidence 456688899999888878876533 245666666554 7998866 678899998854
No 43
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=59.44 E-value=18 Score=22.65 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..+.-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4566777788888765 33677889999999997776555443
No 44
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=58.25 E-value=26 Score=22.74 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH------NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC------HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4456667777788765 33577889999999998876655554
No 45
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=57.55 E-value=28 Score=22.64 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHH--HHhhhcCC-hhhhhhhhhhcc
Q 029075 14 NAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQIS--EAYEVLSD-PQKRAVYDQYGE 71 (199)
Q Consensus 14 ~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~--~Ay~~Lsd-~~~R~~Yd~~g~ 71 (199)
-++.+|.+.+|++|...++-+-. . .-++..+.|. .-|.+|.+ ..++.+|+.|-.
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~--~--tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~ 67 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSN--A--SWEQAMKMIINDPRYSALAKLSEKKQAFNAYKV 67 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTT--C--CHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCC--C--CHHHHHHHHccCccccccCCHHHHHHHHHHHHH
Confidence 46899999999999998754332 2 1222333343 36888887 568888988754
No 46
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=54.75 E-value=30 Score=23.14 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP------FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC------HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677777899865 34677889999999998876655543
No 47
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=52.17 E-value=29 Score=22.48 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567777888899865 33677889999999997776554443
No 48
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.19 E-value=28 Score=23.28 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+..|...+.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS------LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456667777899865 33677889999999998776555544
No 49
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=50.93 E-value=19 Score=22.74 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHH---HHHhhhcCC-hh-hhhhhhhhc
Q 029075 18 DDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQI---SEAYEVLSD-PQ-KRAVYDQYG 70 (199)
Q Consensus 18 ~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i---~~Ay~~Lsd-~~-~R~~Yd~~g 70 (199)
+|..+||.+|.+...=|-+- .-++..+.| ..-|.+|.| |. ++.+|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~w----sweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW----SFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC----CHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC----cHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 57789999998877555442 233445555 458999997 55 888999874
No 50
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=49.10 E-value=44 Score=21.21 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+..|...+.-||+.. ..++.+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS------IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC------HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455666677788765 34677889999999998776544443
No 51
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=48.89 E-value=35 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|...+.-||+.. ..+.-+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK------VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC------HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556777778899875 24677889999999987 555543
No 52
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=48.32 E-value=27 Score=23.31 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.+.+|...+.-||+.. ..++-+.|.+.|..|++.++....+..
T Consensus 32 ~~~~r~~~k~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS------ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455667777889855 336778899999999987766555554
No 53
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=47.61 E-value=34 Score=22.00 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (80)
T 1gt0_D 14 SRGQRRKMAQENPKMH------NSEISKRLGAEWKLLSETEKRPFIDE 55 (80)
T ss_dssp HHHHHHHHHTTSTTSC------HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456666777788754 33577889999999998776555554
No 54
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=47.13 E-value=39 Score=21.40 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.... ++-+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS------EISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS------HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH------HHHHHHHhHHHhCCHHHHHHHHHH
Confidence 455667777789987632 466789999999997766554443
No 55
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=46.98 E-value=37 Score=23.43 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 20 LKKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 20 Ikkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
-.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 40 F~~~~r~~~k~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 40 WAQAARRKLADQYPHLH------NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp HHHHHHHHHHHHCTTSC------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35567777788899765 23678889999999998776655554
No 56
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=46.41 E-value=40 Score=21.81 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.+.. ++-+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR------GATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT------HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHH------HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677778889986531 467789999999998776555554
No 57
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=45.95 E-value=38 Score=21.65 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH------NAEISKRLGKRWKLLKDSDKIPFIQE 55 (79)
T ss_dssp HHHHHHHHHTTSTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777777788765 33678889999999997766554443
No 58
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=45.38 E-value=34 Score=22.53 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD------NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHTHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4556677777889864 33567889999999997776544443
No 59
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=45.28 E-value=43 Score=21.87 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.+ ..++-+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (85)
T 1j46_A 16 SRDQRRKMALENPRMR------NSEISKQLGYQWKMLTEAEKWPFFQE 57 (85)
T ss_dssp HHHHHHHHHHHSTTSC------HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4456666777788765 33577889999999997766544443
No 60
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.19 E-value=35 Score=22.51 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
-+.+|...+.-||+.. + ..++-+.|.+.|..|++.++....+..
T Consensus 17 ~~e~R~~ik~~~P~~~--~---~~eisK~lge~Wk~ls~eeK~~y~~~A 60 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--D---EADIIKEGMIRFRVLSTEERKVWANKA 60 (81)
T ss_dssp HHHHHHHHHHHCTTCC--S---HHHHHHHHHHHHSSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCc--h---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456777788899875 1 336788899999999988776655543
No 61
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=45.02 E-value=41 Score=20.96 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 23 AYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 23 ayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
..|...+.-||+... ...+.-+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~----~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASV----NFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCC----CHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCC----cHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 445556677898652 134677889999999998876555443
No 62
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.78 E-value=40 Score=22.99 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.. ..++-+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~i~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 70 (102)
T 2co9_A 29 FRDTQAAIKGQNPNAT------FGEVSKIVASMWDGLGEEQKQVYKKK 70 (102)
T ss_dssp HHHHHHHHHHHCTTSC------HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 3455666777789865 33577889999999998766555443
No 63
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=44.48 E-value=46 Score=21.74 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+.+|..++.-||+.+ ..++-+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~y~~~ 55 (86)
T 2lef_A 14 MKEMRANVVAESTLKE------SAAINQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHHHSSCCC------HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456666777789865 33577889999999997766544443
No 64
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.90 E-value=40 Score=22.11 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+..|...+.-||+.... ..+.-+.|.+.|..|++.++....+.
T Consensus 27 ~~~~r~~~k~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN----FAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344566667778986521 34677889999999998776555443
No 65
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=35.13 E-value=58 Score=22.08 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQY 69 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~~ 69 (199)
.+..|..++.-||+... .++-+.|.+.|..|++.++....+..
T Consensus 22 ~~~~r~~ik~~~P~~~~------~eisk~lg~~Wk~ls~eeK~~Y~~~A 64 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMSN------LDLTKILSKKYKELPEKKKMKYIQDF 64 (99)
T ss_dssp HHHHHHHHHTTCTTSCS------HHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556667777888652 25778899999999988776555543
No 66
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=33.61 E-value=22 Score=26.28 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 029075 6 YKILGVDRNAKDDDLKKAYRKLAMKWHPD 34 (199)
Q Consensus 6 Y~iLgv~~~a~~~eIkkayrkla~~~HPD 34 (199)
+..|-|....+.+|++++-..+..++||+
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 67778888889999999988888889997
No 67
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=32.75 E-value=1e+02 Score=20.47 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCChhHHHHHHHHHHH--HhhhcCChhhhhhhhhhccc
Q 029075 14 NAKDDDLKKAYRKLAMKWHPDKNPNNKKDAETKFKQISE--AYEVLSDPQKRAVYDQYGEE 72 (199)
Q Consensus 14 ~a~~~eIkkayrkla~~~HPDk~~~~~~~a~~~f~~i~~--Ay~~Lsd~~~R~~Yd~~g~~ 72 (199)
..+.++-+.+|++|...++-+-. . .-+.....|.. -|.+|....+|..|+.|-..
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~--~--tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~~ 69 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAF--S--TWEKELHKIVFDPRYLLLNPKERKQVFDQYVKT 69 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSS--S--CHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCC--C--CHHHHHHHHccCCccccCCHHHHHHHHHHHHHH
Confidence 45889999999999998764433 2 23333344433 68888766789999998643
No 68
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=30.45 E-value=1e+02 Score=22.04 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhcCChhhhhhhhhhc
Q 029075 45 TKFKQISEAYEVLSDPQKRAVYDQYG 70 (199)
Q Consensus 45 ~~f~~i~~Ay~~Lsd~~~R~~Yd~~g 70 (199)
+.|..|.+-|. .||.-+..||+++
T Consensus 100 e~~~~L~~mYv--~D~rF~~~~d~~~ 123 (143)
T 1ny9_A 100 EMHTCLGEMYV--SDERFTRNIDAAK 123 (143)
T ss_dssp HHHHHHHHHTT--STHHHHHHHGGGS
T ss_pred HHHHHHHHHHh--cCHHHHHhHcccC
Confidence 34555555553 6888888898874
No 69
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=27.61 E-value=85 Score=24.89 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+.+|...++-||+.. ..+..+.|.+.|..|++.++....|.
T Consensus 54 ~e~r~~~k~~~P~~~------~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 54 KEQLPIFKAQNPDAK------TTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp HHHHHHHHHHSTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556667788765 34678889999999998776655553
No 70
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=27.35 E-value=90 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
-+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 21 ~~~~r~~~k~~~P~~~------~~eisk~lge~Wk~Ls~~EK~~y~~~ 62 (214)
T 3tq6_A 21 SKEQLPIFKAQNPDAK------TTELIRRIAQRWRELPDSKKKIYQDA 62 (214)
T ss_dssp HHHHHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC------HHHHHHHHHHHHHccCHHhhhHHHHH
Confidence 3455666777799765 34678889999999998776655543
No 71
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=26.30 E-value=3.2 Score=38.72 Aligned_cols=27 Identities=0% Similarity=-0.274 Sum_probs=23.8
Q ss_pred EEEEeeeHHHHhcCceEEEEeeeeeec
Q 029075 170 ENKLPCSLEDLYKGTTKKMKISREIAD 196 (199)
Q Consensus 170 ~~~l~vtLee~~~G~~k~l~~~r~v~~ 196 (199)
.++|.|+|+|++.|++++++|.+.+.|
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C 194 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTC 194 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHH
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcC
Confidence 468899999999999999999887665
No 72
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=26.29 E-value=59 Score=21.00 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
+..|...+.-||+...... ++-+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~~~~~----eisk~lg~~Wk~ls~~eK~~y~~~ 62 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNFS----EFSKKCSERWKTMSAKEKGKFEDM 62 (83)
T ss_dssp HHHHHHHTTSCTTTCCCSS----SSHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHH----HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456666677888652111 356779999999998876555543
No 73
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=25.94 E-value=1.1e+02 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhhh
Q 029075 24 YRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYDQ 68 (199)
Q Consensus 24 yrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd~ 68 (199)
.+..++.-||+.+ ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~ki~~~~P~~~------~~eisk~lg~~Wk~ls~~eK~~y~~~ 57 (159)
T 2gzk_A 19 QRRKMALENPRMR------NSEISKQLGYQWKMLTEAEKWPFFQE 57 (159)
T ss_dssp HHHHHHHHCSSCC------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC------HHHHHHHHHHHHHHhhHHHhccHHHH
Confidence 4444557799855 33577889999999998876655553
No 74
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.52 E-value=1.4e+02 Score=22.08 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh
Q 029075 22 KAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD 67 (199)
Q Consensus 22 kayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd 67 (199)
+.+|..++.-||+.+ ..++-+.|.+.|..|++.++....+
T Consensus 114 ~~~r~~~~~~~p~~~------~~ei~k~lg~~Wk~ls~~eK~~y~~ 153 (173)
T 2yrq_A 114 SEYRPKIKGEHPGLS------IGDVAKKLGEMWNNTAADDKQPYEK 153 (173)
T ss_dssp HHHHHHHHHHCSSSC------HHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334555555677644 3357788999999999877655444
No 75
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.85 E-value=99 Score=22.92 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD 67 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd 67 (199)
.+..|...+.-||+... ...++.+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~----~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASV----NFSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHHHCTTCCC----CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44556667778998531 13467788999999999887655544
No 76
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.75 E-value=1.3e+02 Score=25.29 Aligned_cols=26 Identities=4% Similarity=0.103 Sum_probs=19.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHh
Q 029075 4 DYYKILGVDRNAKDDDLKKAYRKLAMKW 31 (199)
Q Consensus 4 d~Y~iLgv~~~a~~~eIkkayrkla~~~ 31 (199)
.|+++|.. +.+.++|+..++.+...+
T Consensus 220 ~W~~~~~~--~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 220 HWWEYVDA--TVTLELLDELTHEFLQIL 245 (358)
T ss_dssp CTTTTSCS--SCCHHHHHHHHHHHHHHT
T ss_pred chHHHHhc--cCCHHHHHHHHHHHHHHH
Confidence 47777643 468889999999888766
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=21.09 E-value=65 Score=20.95 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.4
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 029075 8 ILGVDRNAKDDDLKKAYRKL 27 (199)
Q Consensus 8 iLgv~~~a~~~eIkkayrkl 27 (199)
|=||+++++.++|++.+.+.
T Consensus 6 v~nLp~~~te~~l~~~F~~~ 25 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSH 25 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHh
Confidence 34889999999999888765
No 78
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=21.04 E-value=1.5e+02 Score=21.39 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCChhHHHHHHHHHHHHhhhcCChhhhhhhh
Q 029075 21 KKAYRKLAMKWHPDKNPNNKKDAETKFKQISEAYEVLSDPQKRAVYD 67 (199)
Q Consensus 21 kkayrkla~~~HPDk~~~~~~~a~~~f~~i~~Ay~~Lsd~~~R~~Yd 67 (199)
.+.+|...+.-||+.. ..++-+.|.+.|..|++.++....+
T Consensus 100 ~~~~r~~~~~~~p~~~------~~ei~k~lg~~Wk~ls~~eK~~y~~ 140 (159)
T 2gzk_A 100 CSEYRPKIKGEHPGLS------IGDVAKKLGEMWNNTAADDKQPYEK 140 (159)
T ss_dssp HHHHHHHHHHHCSCCC------HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hHhhHHHHHHhCCCCC------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445666666788754 3457788999999999776544433
No 79
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.57 E-value=51 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 029075 8 ILGVDRNAKDDDLKKAYRKLA 28 (199)
Q Consensus 8 iLgv~~~a~~~eIkkayrkla 28 (199)
++-|++.|+..|||+|-.+|-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466888999999999988874
Done!