BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029076
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 31 LVRSSCAHASYPAVCLRTLSS-FKGAAETPRDLAQAAVNVSLSRASKVSAYLSQVSSDVN 89
L+ C P++CL+ L S + A++ + L Q +++++ + A + S ++ +++
Sbjct: 5 LISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQAT 64
Query: 90 KGKSTNKRERLALSDCVEQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDE 149
K + E C E +D+++ L + L GD S + + S+A
Sbjct: 65 DPKLKGRYET-----CSENYADAIDSLGQAKQFLT--SGDYNSLNI-----YASAAFDGA 112
Query: 150 DTCLDGFE 157
TC D FE
Sbjct: 113 GTCEDSFE 120
>pdb|3MVB|O Chain O, Crystal Structure Of A Triple Rfy Mutant Of Human Mterf1
Bound To The Termination Sequence
Length = 343
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 18 AAGSKHGHDEPHDLVRSSCAHASYPAVCLRTLSSFKGAAETPRDLAQAAVNVSLSRASKV 77
AAG GH++P D VR PA+ +++ K E R L
Sbjct: 167 AAGLSLGHNDPADFVRKIIFKN--PAILIQSTKRVKANIEFLRSTFNLNSEELLVLICGP 224
Query: 78 SAYLSQVSSDVNKGKSTNKRERLALSDCVEQ 108
A + +S+D + N +E+L C E+
Sbjct: 225 GAEILDLSNDAARRSYANIKEKLFSLGCTEE 255
>pdb|2KBB|A Chain A, Nmr Structure Of The Talin Rod Domain, 1655-1822
pdb|2KGX|A Chain A, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 174
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 89 NKGKSTNKRERLALSDCVEQISDSVEDLSKTLNE 122
N ++ + +E AL + V+ ++++VEDL+ TLNE
Sbjct: 137 NPKQAAHTQE--ALEEAVQMMTEAVEDLTTTLNE 168
>pdb|4F7G|B Chain B, Crystal Structure Of Talin Autoinhibition Complex
Length = 216
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 101 ALSDCVEQISDSVEDLSKTLNE 122
AL + V+ ++++VEDL+ TLNE
Sbjct: 164 ALEEAVQMMTEAVEDLTTTLNE 185
>pdb|3MVA|O Chain O, Crystal Structure Of Human Mterf1 Bound To The Termination
Sequence
Length = 343
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 18 AAGSKHGHDEPHDLVRSSCAHASYPAVCLRTLSSFKGAAETPRDLAQAAVNVSLSRASKV 77
AAG GH++P D VR P + +++ K E R L
Sbjct: 167 AAGLSLGHNDPADFVRKIIFKN--PFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGP 224
Query: 78 SAYLSQVSSDVNKGKSTNKRERLALSDCVEQ 108
A + +S+D + N +E+L C E+
Sbjct: 225 GAEILDLSNDYARRSYANIKEKLFSLGCTEE 255
>pdb|3N6S|A Chain A, Crystal Structure Of Human Mitochondrial Mterf In Complex
With A 15- Mer Dna Encompassing The Trnaleu(Uur) Binding
Sequence
Length = 353
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 18 AAGSKHGHDEPHDLVRSSCAHASYPAVCLRTLSSFKGAAETPRDLAQAAVNVSLSRASKV 77
AAG GH++P D VR P + +++ K E R L
Sbjct: 168 AAGLSLGHNDPADFVRKIIFKN--PFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGP 225
Query: 78 SAYLSQVSSDVNKGKSTNKRERLALSDCVEQ 108
A + +S+D + N +E+L C E+
Sbjct: 226 GAEILDLSNDYARRSYANIKEKLFSLGCTEE 256
>pdb|3N7Q|A Chain A, Crystal Structure Of Human Mitochondrial Mterf Fragment
(Aa 99-399) In Complex With A 12-Mer Dna Encompassing
The Trnaleu(Uur) Binding Sequence
Length = 310
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 18 AAGSKHGHDEPHDLVRSSCAHASYPAVCLRTLSSFKGAAETPRDLAQAAVNVSLSRASKV 77
AAG GH++P D VR P + +++ K E R L
Sbjct: 125 AAGLSLGHNDPADFVRKIIFKN--PFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGP 182
Query: 78 SAYLSQVSSDVNKGKSTNKRERLALSDCVEQ 108
A + +S+D + N +E+L C E+
Sbjct: 183 GAEILDLSNDYARRSYANIKEKLFSLGCTEE 213
>pdb|3QQ7|A Chain A, Crystal Structure Of The P97 N-Terminal Domain
pdb|3QQ8|A Chain A, Crystal Structure Of P97-N In Complex With Faf1-Ubx
Length = 186
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 17 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 74
Query: 151 TCLD 154
TC D
Sbjct: 75 TCSD 78
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|3QWZ|A Chain A, Crystal Structure Of Faf1 Ubx-P97n-Domain Complex
Length = 211
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 21 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGXKRREAVCIVLSD-D 78
Query: 151 TCLD 154
TC D
Sbjct: 79 TCSD 82
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSKT-LNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSK-TLNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 93 STNKRERLALSDCVEQISDSVEDLSKTLNELKHLKG 128
+T K RLA D ++I ++ DLSK + H +G
Sbjct: 148 TTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQG 183
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 116 LSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGF 156
L K+L+ + + SW M N E W + LDG+
Sbjct: 201 LKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGY 241
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 26.6 bits (57), Expect = 8.7, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 92 KSTNKRERLALSDCVEQISDSVEDLSK-TLNELKHLKGDTFSWQMSNAETWVSSALTDED 150
K N+ RL + + + + +SV LS+ ++EL+ +GDT + V L+D D
Sbjct: 18 KQKNRPNRLIVDEAINE-DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSD-D 75
Query: 151 TCLD 154
TC D
Sbjct: 76 TCSD 79
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 116 LSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGF 156
L K+L+ + + SW M N E W + LDG+
Sbjct: 262 LKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGY 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.123 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,567,385
Number of Sequences: 62578
Number of extensions: 141190
Number of successful extensions: 296
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 23
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)