Query 029076
Match_columns 199
No_of_seqs 119 out of 884
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 5.4E-34 1.9E-38 217.7 14.8 148 29-189 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 6.8E-34 2.3E-38 217.4 14.1 149 27-190 3-152 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 7.1E-33 2.4E-37 211.2 13.5 145 28-188 3-149 (150)
4 1co7_I BPTI, bovine pancreatic 43.1 4.5 0.00015 27.6 -0.3 17 31-47 34-50 (99)
5 3cjh_B Mitochondrial import in 40.6 62 0.0021 19.8 5.0 31 92-122 32-62 (64)
6 3dxr_B Mitochondrial import in 34.2 82 0.0028 21.1 5.0 34 92-125 54-87 (95)
7 2bsk_B Mitochondrial import in 33.1 98 0.0033 20.3 5.3 34 92-125 41-74 (90)
8 3dxr_A Mitochondrial import in 31.7 1.1E+02 0.0036 20.2 5.2 34 92-125 48-81 (89)
9 2bsk_A Mitochondrial import in 31.5 1.1E+02 0.0037 20.2 5.2 34 92-125 39-72 (89)
10 2l7n_A Talin-1; integrin, bund 30.5 1.7E+02 0.0057 21.8 6.9 59 62-125 77-136 (168)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=5.4e-34 Score=217.72 Aligned_cols=148 Identities=18% Similarity=0.354 Sum_probs=135.7
Q ss_pred chHHhhcCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCHHHHHHHHHHHH
Q 029076 29 HDLVRSSCAHASYPAVCLRTLSSFKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSDVNKGKSTNKRERLALSDCVE 107 (199)
Q Consensus 29 ~~~v~~~C~~T~~p~~C~~~L~~~~~s~~-d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC~e 107 (199)
.+.|+.+|++|+||++|+++|.++|++.. |+++|++++++.++.+++.+..++..+.+. ..++..+.+++||.+
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~-----~~~~~~~~al~dC~e 77 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQ-----ATDPKLKGRYETCSE 77 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 57899999999999999999999998766 999999999999999999999999998764 347999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHHhc
Q 029076 108 QISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKIGNVARVTSNALYMLTR 187 (199)
Q Consensus 108 ~y~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~snaLaiv~~ 187 (199)
+|++++++|++++.+++.+ .++|+++|||+|++|++||+|||.+.+ .++++|...+.++.+|++|+|+|++.
T Consensus 78 ~y~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~ 149 (153)
T 1xg2_B 78 NYADAIDSLGQAKQFLTSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP-NIPTQLHQADLKLEDLCDIVLVISNL 149 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHhcccchHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999753 378999999999999999999998764 46789999999999999999999998
Q ss_pred cc
Q 029076 188 LD 189 (199)
Q Consensus 188 ~~ 189 (199)
+.
T Consensus 150 l~ 151 (153)
T 1xg2_B 150 LP 151 (153)
T ss_dssp CC
T ss_pred hc
Confidence 74
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=6.8e-34 Score=217.43 Aligned_cols=149 Identities=22% Similarity=0.351 Sum_probs=133.7
Q ss_pred CcchHHhhcCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCHHHHHHHHHH
Q 029076 27 EPHDLVRSSCAHASYPAVCLRTLSSFKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSDVNKGKSTNKRERLALSDC 105 (199)
Q Consensus 27 ~~~~~v~~~C~~T~~p~~C~~~L~~~~~s~~-d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC 105 (199)
++.+.|+.+|++|+||++|+++| +|.+.. |+++|++++++.++.+++.+..++..+.+. ..++..+.+++||
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~-----~~~~~~~~al~dC 75 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASANLQALAKTTLDSTQARATQTLKKLQSIIDG-----GVDPRSKLAYRSC 75 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHH
Confidence 45688999999999999999999 566655 999999999999999999999999998875 3479999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 029076 106 VEQISDSVEDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKIGNVARVTSNALYML 185 (199)
Q Consensus 106 ~e~y~~a~~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~snaLaiv 185 (199)
.++|++++++|++++.+++.+ .++|+++|||+|++|++||+|||.+.+ +++++|...+.++.+|++|+|+|+
T Consensus 76 ~e~y~~a~~~L~~a~~~l~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~ 147 (153)
T 1x91_A 76 VDEYESAIGNLEEAFEHLASG-------DGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVIS 147 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccHhHHHHHhccCC-CCcCHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999753 378999999999999999999998764 467899999999999999999999
Q ss_pred hcccc
Q 029076 186 TRLDE 190 (199)
Q Consensus 186 ~~~~~ 190 (199)
+.+..
T Consensus 148 ~~l~~ 152 (153)
T 1x91_A 148 NMLPR 152 (153)
T ss_dssp HHSCC
T ss_pred HHccC
Confidence 98753
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=7.1e-33 Score=211.23 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=131.1
Q ss_pred cchHHhhcCCCCCChhhHHHHhccccCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCHHHHHHHHHHH
Q 029076 28 PHDLVRSSCAHASYPAVCLRTLSSFKGAAE-TPRDLAQAAVNVSLSRASKVSAYLSQVSSDVNKGKSTNKRERLALSDCV 106 (199)
Q Consensus 28 ~~~~v~~~C~~T~~p~~C~~~L~~~~~s~~-d~~~l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~~~~al~dC~ 106 (199)
+.+.|+.+|++|+||++|+++|.++|++.. |+.+|++++++.++.+++.+..++..+.+. ..++..+.+++||.
T Consensus 3 ~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~-----~~~~~~~~al~dC~ 77 (150)
T 2cj4_A 3 MNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS-----NPPAAWKGPLKNCA 77 (150)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHTSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CCCGGGHHHHHHHH
T ss_pred chHHHHHHHcCCCCccHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHH
Confidence 468999999999999999999999998766 999999999999999999999999998764 34688899999999
Q ss_pred HHHHHHH-HHHHHHHHHhhccCCCcccccchhhHHHHHHhhcccchHhhccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 029076 107 EQISDSV-EDLSKTLNELKHLKGDTFSWQMSNAETWVSSALTDEDTCLDGFEDVDSKVKSDVKRKIGNVARVTSNALYML 185 (199)
Q Consensus 107 e~y~~a~-~~L~~a~~~l~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~snaLaiv 185 (199)
++|++++ ++|++++.+++.+ .++++++|||+|++|++||+|||.+. +++|...+.++.+|++|+|+|+
T Consensus 78 e~y~~a~~~~L~~a~~~l~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~----~~pl~~~~~~~~~l~s~aLaii 146 (150)
T 2cj4_A 78 FSYKVILTASLPEAIEALTKG-------DPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAIV 146 (150)
T ss_dssp HHHHHHHHTHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHHHHH
Confidence 9999999 7999999999752 47899999999999999999999742 4678889999999999999999
Q ss_pred hcc
Q 029076 186 TRL 188 (199)
Q Consensus 186 ~~~ 188 (199)
+.+
T Consensus 147 ~~l 149 (150)
T 2cj4_A 147 RNL 149 (150)
T ss_dssp HTT
T ss_pred Hhh
Confidence 875
No 4
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=43.08 E-value=4.5 Score=27.63 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=4.3
Q ss_pred HHhhcCCCCCChhhHHH
Q 029076 31 LVRSSCAHASYPAVCLR 47 (199)
Q Consensus 31 ~v~~~C~~T~~p~~C~~ 47 (199)
....+|..-..+..|..
T Consensus 34 ~~~~~C~~p~~~G~C~~ 50 (99)
T 1co7_I 34 QRPDFCLEPPYTGPCKA 50 (99)
T ss_dssp ---------CCCCSBCC
T ss_pred CCCccCCCCCcCCCCCC
Confidence 45667776655555653
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=40.64 E-value=62 Score=19.81 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029076 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNE 122 (199)
Q Consensus 92 ~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~ 122 (199)
+..+..+..+++.|.+.|-++-..+.+.+.+
T Consensus 32 ~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 32 SNLSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999998888776654
No 6
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=34.20 E-value=82 Score=21.14 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029076 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..+++.|.+.|-++-..+.+.+.++..
T Consensus 54 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q 87 (95)
T 3dxr_B 54 GELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 87 (95)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999988887653
No 7
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=33.10 E-value=98 Score=20.34 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029076 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..+++.|.+.|-++-..+.+.+.++..
T Consensus 41 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 74 (90)
T 2bsk_B 41 AELSKGESVCLDRCVSKYLDIHERMGKKLTELSM 74 (90)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999888887654
No 8
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=31.73 E-value=1.1e+02 Score=20.17 Aligned_cols=34 Identities=15% Similarity=0.339 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029076 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..++..|.+.|-++-..+.+.+.++..
T Consensus 48 ~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~ 81 (89)
T 3dxr_A 48 SKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNA 81 (89)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999988887653
No 9
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=31.54 E-value=1.1e+02 Score=20.15 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029076 92 KSTNKRERLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 92 ~~~~~~~~~al~dC~e~y~~a~~~L~~a~~~l~~ 125 (199)
+..+..+..++..|.+.|-++-..+.+...++..
T Consensus 39 ~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~ 72 (89)
T 2bsk_A 39 REVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 72 (89)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999998887753
No 10
>2l7n_A Talin-1; integrin, bundle, focal adhesion, structural protein; NMR {Mus musculus}
Probab=30.51 E-value=1.7e+02 Score=21.80 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029076 62 LAQAAVNVSLSRASKVSAYLSQVSSDVNKGKSTNKRE-RLALSDCVEQISDSVEDLSKTLNELKH 125 (199)
Q Consensus 62 l~~~ai~~a~~~a~~~~~~i~~l~~~~~~~~~~~~~~-~~al~dC~e~y~~a~~~L~~a~~~l~~ 125 (199)
+.-++-+.+...++.....++.+... ..++.. +.-+..+.++++++..-++++...+.+
T Consensus 77 y~g~aar~~A~aL~~lt~avrgvaat-----t~d~~~q~~ll~~a~~V~~~s~~Li~ear~~~~~ 136 (168)
T 2l7n_A 77 YAGIAARDVAGGLRSLAQAARGVAAL-----TSDPAVQAIVLDTASDVLDKASSLIEEAKKASGH 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTBS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555455555555555556666543 233433 455566668888888888888877754
Done!