Query 029077
Match_columns 199
No_of_seqs 150 out of 2038
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03071 GTP-binding nuclear p 100.0 8E-39 1.7E-43 231.2 22.3 193 1-193 1-193 (219)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.3E-39 1.1E-43 217.9 17.8 173 11-183 7-183 (205)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 7.7E-38 1.7E-42 211.5 17.5 165 11-175 3-170 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-37 3.5E-42 210.1 17.0 170 7-176 16-189 (221)
5 KOG0080 GTPase Rab18, small G 100.0 3.4E-37 7.4E-42 202.1 16.5 170 10-179 8-181 (209)
6 cd04121 Rab40 Rab40 subfamily. 100.0 2.3E-36 5E-41 213.2 20.5 165 12-176 5-171 (189)
7 PTZ00132 GTP-binding nuclear p 100.0 1.8E-35 3.9E-40 213.7 22.5 190 8-197 4-193 (215)
8 KOG0078 GTP-binding protein SE 100.0 3.8E-36 8.2E-41 206.8 17.6 167 9-175 8-177 (207)
9 cd04133 Rop_like Rop subfamily 100.0 1.6E-35 3.4E-40 206.9 20.3 158 14-172 2-173 (176)
10 cd00877 Ran Ran (Ras-related n 100.0 3.6E-35 7.9E-40 204.0 21.0 165 14-178 1-165 (166)
11 KOG0098 GTPase Rab2, small G p 100.0 3.2E-36 6.8E-41 202.3 14.6 174 11-184 4-180 (216)
12 cd04120 Rab12 Rab12 subfamily. 100.0 3.1E-35 6.7E-40 209.3 20.0 161 14-174 1-165 (202)
13 KOG0394 Ras-related GTPase [Ge 100.0 7.2E-36 1.6E-40 200.2 15.4 166 11-176 7-182 (210)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.9E-35 8.4E-40 206.0 19.6 161 11-172 3-180 (182)
15 smart00176 RAN Ran (Ras-relate 100.0 6E-35 1.3E-39 207.5 20.3 167 19-185 1-167 (200)
16 cd04131 Rnd Rnd subfamily. Th 100.0 9.3E-35 2E-39 203.7 19.7 159 13-172 1-176 (178)
17 cd01875 RhoG RhoG subfamily. 100.0 1.1E-34 2.5E-39 205.7 20.2 162 11-173 1-178 (191)
18 KOG0079 GTP-binding protein H- 100.0 1.3E-35 2.7E-40 192.1 12.1 160 13-172 8-169 (198)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.1E-34 1.7E-38 205.2 20.3 163 11-174 11-190 (232)
20 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.6E-34 2.1E-38 199.3 19.5 159 14-173 1-167 (182)
21 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-33 3.3E-38 201.6 20.5 163 14-176 1-172 (201)
22 cd04122 Rab14 Rab14 subfamily. 100.0 1.3E-33 2.7E-38 196.4 19.5 161 13-173 2-165 (166)
23 cd04117 Rab15 Rab15 subfamily. 100.0 2.7E-33 5.8E-38 193.7 19.6 157 14-170 1-160 (161)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.9E-33 4E-38 196.4 18.9 161 13-174 2-166 (172)
25 cd04124 RabL2 RabL2 subfamily. 100.0 5E-33 1.1E-37 192.4 20.0 160 14-174 1-160 (161)
26 cd01874 Cdc42 Cdc42 subfamily. 100.0 4E-33 8.6E-38 195.2 19.5 158 13-171 1-174 (175)
27 KOG0093 GTPase Rab3, small G p 100.0 4.8E-34 1E-38 184.6 13.6 161 14-174 22-185 (193)
28 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.2E-33 9.1E-38 200.6 19.8 162 13-175 1-179 (222)
29 cd04110 Rab35 Rab35 subfamily. 100.0 6E-33 1.3E-37 198.2 20.2 166 12-177 5-172 (199)
30 cd01865 Rab3 Rab3 subfamily. 100.0 7.2E-33 1.6E-37 192.3 20.0 160 14-173 2-164 (165)
31 PF00071 Ras: Ras family; Int 100.0 5.4E-33 1.2E-37 192.4 19.0 158 15-172 1-161 (162)
32 cd01871 Rac1_like Rac1-like su 100.0 8.1E-33 1.8E-37 193.4 19.3 157 13-170 1-173 (174)
33 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.2E-32 2.6E-37 191.4 19.8 160 13-172 2-164 (166)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 1.2E-32 2.5E-37 191.7 19.4 161 13-173 3-166 (167)
35 cd04127 Rab27A Rab27a subfamil 100.0 9.4E-33 2E-37 194.4 19.0 162 12-173 3-178 (180)
36 KOG0086 GTPase Rab4, small G p 100.0 8.7E-34 1.9E-38 184.7 12.3 175 13-187 9-186 (214)
37 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-32 2.7E-37 191.4 19.2 159 14-172 1-167 (168)
38 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.9E-32 4.2E-37 190.9 19.4 159 15-173 2-166 (170)
39 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.3E-33 1.6E-37 189.9 16.0 163 11-173 12-177 (222)
40 cd04106 Rab23_lke Rab23-like s 100.0 2.6E-32 5.7E-37 188.9 18.9 157 14-170 1-161 (162)
41 cd04134 Rho3 Rho3 subfamily. 100.0 4.1E-32 8.9E-37 192.4 19.7 159 14-173 1-175 (189)
42 cd04116 Rab9 Rab9 subfamily. 100.0 6.4E-32 1.4E-36 188.5 19.8 160 11-170 3-169 (170)
43 cd04125 RabA_like RabA-like su 100.0 6.4E-32 1.4E-36 191.4 19.9 164 14-177 1-167 (188)
44 PTZ00369 Ras-like protein; Pro 100.0 5.4E-32 1.2E-36 191.8 19.4 164 10-174 2-169 (189)
45 cd04109 Rab28 Rab28 subfamily. 100.0 6.2E-32 1.4E-36 195.1 19.7 161 14-174 1-168 (215)
46 cd04136 Rap_like Rap-like subf 100.0 5.1E-32 1.1E-36 187.6 18.5 157 14-171 2-162 (163)
47 cd01868 Rab11_like Rab11-like. 100.0 8.2E-32 1.8E-36 187.0 19.2 159 13-171 3-164 (165)
48 cd04175 Rap1 Rap1 subgroup. T 100.0 7.5E-32 1.6E-36 187.0 19.0 159 13-172 1-163 (164)
49 KOG0095 GTPase Rab30, small G 100.0 4.1E-33 8.9E-38 180.9 11.7 163 13-175 7-172 (213)
50 cd04113 Rab4 Rab4 subfamily. 100.0 8.5E-32 1.8E-36 186.2 18.8 158 14-171 1-161 (161)
51 cd01866 Rab2 Rab2 subfamily. 100.0 1.4E-31 3.1E-36 186.3 19.8 161 13-173 4-167 (168)
52 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.3E-31 2.8E-36 185.3 19.2 158 13-171 1-161 (162)
53 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-31 2.7E-36 190.2 19.6 162 14-175 1-166 (191)
54 cd04132 Rho4_like Rho4-like su 100.0 9E-32 1.9E-36 190.5 18.8 163 14-177 1-172 (187)
55 cd04118 Rab24 Rab24 subfamily. 100.0 2.8E-31 6.1E-36 188.9 20.7 163 14-176 1-170 (193)
56 cd01864 Rab19 Rab19 subfamily. 100.0 1.7E-31 3.7E-36 185.4 19.0 159 13-171 3-165 (165)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 1.7E-31 3.7E-36 185.0 18.8 158 13-171 1-162 (163)
58 cd04111 Rab39 Rab39 subfamily. 100.0 1.9E-31 4.2E-36 191.7 19.2 162 13-174 2-168 (211)
59 cd01873 RhoBTB RhoBTB subfamil 100.0 2.3E-31 4.9E-36 188.8 19.0 156 13-170 2-194 (195)
60 PLN03110 Rab GTPase; Provision 100.0 3E-31 6.6E-36 191.4 19.9 163 11-173 10-175 (216)
61 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-31 3.9E-36 189.3 18.1 162 15-177 1-168 (190)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.6E-31 9.9E-36 184.1 19.5 159 13-171 2-168 (170)
63 smart00174 RHO Rho (Ras homolo 100.0 4.3E-31 9.3E-36 184.9 19.3 157 16-173 1-173 (174)
64 smart00175 RAB Rab subfamily o 100.0 4.9E-31 1.1E-35 182.8 19.4 160 14-173 1-163 (164)
65 cd04140 ARHI_like ARHI subfami 100.0 3.6E-31 7.8E-36 183.8 18.6 156 14-170 2-163 (165)
66 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.4E-31 1.2E-35 182.7 19.3 158 14-171 1-163 (164)
67 cd04126 Rab20 Rab20 subfamily. 100.0 4.4E-31 9.6E-36 190.0 18.9 155 14-173 1-191 (220)
68 cd04145 M_R_Ras_like M-Ras/R-R 100.0 8.7E-31 1.9E-35 181.6 19.2 159 12-171 1-163 (164)
69 cd01861 Rab6 Rab6 subfamily. 100.0 1E-30 2.2E-35 180.7 19.0 157 14-170 1-160 (161)
70 smart00173 RAS Ras subfamily o 100.0 8.9E-31 1.9E-35 181.6 18.6 158 14-172 1-162 (164)
71 cd04142 RRP22 RRP22 subfamily. 100.0 1.6E-30 3.4E-35 185.1 20.0 162 14-175 1-177 (198)
72 cd01860 Rab5_related Rab5-rela 100.0 1.4E-30 3.1E-35 180.4 19.3 159 13-171 1-162 (163)
73 PLN03108 Rab family protein; P 100.0 1.1E-30 2.5E-35 187.8 19.1 163 12-174 5-170 (210)
74 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.7E-30 3.7E-35 181.8 19.5 155 14-169 1-171 (173)
75 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-30 2.3E-35 182.0 18.4 162 11-173 2-167 (169)
76 cd01862 Rab7 Rab7 subfamily. 100.0 1.7E-30 3.7E-35 181.4 19.5 161 14-174 1-169 (172)
77 PLN03118 Rab family protein; P 100.0 2.9E-30 6.4E-35 185.9 21.3 166 11-177 12-182 (211)
78 cd01863 Rab18 Rab18 subfamily. 100.0 2.4E-30 5.3E-35 178.9 19.7 157 14-170 1-160 (161)
79 cd04103 Centaurin_gamma Centau 100.0 1.1E-30 2.4E-35 179.8 17.8 150 14-170 1-157 (158)
80 KOG0096 GTPase Ran/TC4/GSP1 (n 100.0 1E-31 2.2E-36 181.0 12.1 195 1-198 1-195 (216)
81 cd04135 Tc10 TC10 subfamily. 100.0 3.3E-30 7.1E-35 180.5 19.8 157 14-171 1-173 (174)
82 KOG0091 GTPase Rab39, small G 100.0 1.4E-31 3E-36 176.2 11.5 161 13-173 8-174 (213)
83 KOG0088 GTPase Rab21, small G 100.0 1.9E-31 4E-36 174.8 11.1 189 7-195 7-205 (218)
84 cd04148 RGK RGK subfamily. Th 100.0 7.6E-30 1.6E-34 184.6 19.9 168 14-183 1-174 (221)
85 cd04143 Rhes_like Rhes_like su 100.0 5.5E-30 1.2E-34 187.6 18.9 158 14-172 1-171 (247)
86 PLN00223 ADP-ribosylation fact 100.0 3.4E-30 7.4E-35 181.2 16.8 159 11-174 15-180 (181)
87 KOG0081 GTPase Rab27, small G 100.0 3.9E-32 8.4E-37 178.1 6.0 159 14-172 10-181 (219)
88 cd04158 ARD1 ARD1 subfamily. 100.0 4.7E-30 1E-34 178.8 16.9 159 15-178 1-167 (169)
89 cd04146 RERG_RasL11_like RERG/ 100.0 4.9E-30 1.1E-34 178.1 16.7 157 15-172 1-164 (165)
90 cd04123 Rab21 Rab21 subfamily. 100.0 1.8E-29 4E-34 174.4 19.2 158 14-171 1-161 (162)
91 cd04149 Arf6 Arf6 subfamily. 100.0 3E-30 6.4E-35 179.6 15.2 155 10-169 6-167 (168)
92 cd01870 RhoA_like RhoA-like su 100.0 1.7E-29 3.8E-34 176.9 19.2 158 13-171 1-174 (175)
93 cd00154 Rab Rab family. Rab G 100.0 1.3E-29 2.9E-34 174.3 18.0 155 14-168 1-158 (159)
94 cd04177 RSR1 RSR1 subgroup. R 100.0 2.3E-29 5E-34 175.2 19.2 159 13-172 1-164 (168)
95 cd04129 Rho2 Rho2 subfamily. 100.0 4.9E-29 1.1E-33 176.4 19.9 161 13-174 1-175 (187)
96 smart00177 ARF ARF-like small 100.0 1.9E-29 4.1E-34 176.7 17.1 157 11-172 11-174 (175)
97 cd04114 Rab30 Rab30 subfamily. 100.0 6.6E-29 1.4E-33 173.0 19.5 160 12-171 6-168 (169)
98 cd04139 RalA_RalB RalA/RalB su 100.0 5E-29 1.1E-33 172.7 18.7 158 14-172 1-162 (164)
99 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-29 3.4E-34 174.5 15.6 151 14-169 1-158 (159)
100 PTZ00133 ADP-ribosylation fact 100.0 3.5E-29 7.6E-34 176.3 16.8 159 11-174 15-180 (182)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 4.9E-29 1.1E-33 175.8 16.1 163 12-175 2-173 (183)
102 cd04154 Arl2 Arl2 subfamily. 100.0 4.1E-29 9E-34 174.7 15.6 157 8-169 9-172 (173)
103 cd00157 Rho Rho (Ras homology) 100.0 1.7E-28 3.8E-33 171.1 18.5 155 14-169 1-170 (171)
104 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.7E-29 3.7E-34 175.1 13.0 150 16-169 2-163 (164)
105 cd01893 Miro1 Miro1 subfamily. 100.0 1.9E-28 4.1E-33 170.3 18.3 158 14-173 1-165 (166)
106 KOG0393 Ras-related small GTPa 100.0 1.8E-29 4E-34 174.5 12.8 165 11-176 2-183 (198)
107 KOG0097 GTPase Rab14, small G 100.0 2.7E-29 5.8E-34 162.0 12.5 167 12-178 10-179 (215)
108 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.4E-28 5.1E-33 173.7 17.0 147 14-160 1-178 (202)
109 cd00876 Ras Ras family. The R 100.0 2.9E-28 6.3E-33 168.1 17.0 156 15-171 1-160 (160)
110 cd04147 Ras_dva Ras-dva subfam 100.0 4.3E-28 9.4E-33 173.0 18.3 160 15-175 1-166 (198)
111 cd04157 Arl6 Arl6 subfamily. 100.0 1.2E-28 2.6E-33 170.5 14.3 151 15-169 1-161 (162)
112 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.3E-30 7.1E-35 164.4 5.3 156 18-173 2-161 (192)
113 KOG0395 Ras-related GTPase [Ge 100.0 5.1E-28 1.1E-32 170.8 16.0 161 12-173 2-166 (196)
114 cd04137 RheB Rheb (Ras Homolog 100.0 1.6E-27 3.6E-32 167.7 18.3 162 14-176 2-167 (180)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 7.9E-28 1.7E-32 168.4 16.0 153 12-169 14-173 (174)
116 PF00025 Arf: ADP-ribosylation 100.0 2.8E-27 6.2E-32 165.4 16.3 157 10-171 11-175 (175)
117 cd00879 Sar1 Sar1 subfamily. 100.0 1.8E-27 3.9E-32 168.9 15.5 156 11-171 17-190 (190)
118 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.4E-27 2.9E-32 166.1 14.4 150 15-169 1-166 (167)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.4E-27 7.4E-32 164.1 14.9 151 15-169 1-166 (167)
120 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.9E-27 1.1E-31 162.2 15.3 151 15-169 1-159 (160)
121 cd04151 Arl1 Arl1 subfamily. 100.0 5E-27 1.1E-31 161.9 15.3 150 15-169 1-157 (158)
122 PLN00023 GTP-binding protein; 100.0 1.4E-26 3.1E-31 172.2 17.0 140 8-147 16-189 (334)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-26 3.4E-31 159.3 15.6 150 15-169 1-157 (158)
124 smart00178 SAR Sar1p-like memb 99.9 2.3E-26 5E-31 162.3 15.7 155 11-170 15-183 (184)
125 cd04159 Arl10_like Arl10-like 99.9 7.6E-26 1.6E-30 155.6 15.4 150 16-169 2-158 (159)
126 KOG0073 GTP-binding ADP-ribosy 99.9 9.8E-26 2.1E-30 148.7 15.0 158 11-173 14-179 (185)
127 cd01890 LepA LepA subfamily. 99.9 7.7E-26 1.7E-30 159.0 15.2 154 15-171 2-176 (179)
128 KOG4252 GTP-binding protein [S 99.9 1.8E-28 3.9E-33 164.0 1.3 163 11-173 18-182 (246)
129 cd01897 NOG NOG1 is a nucleola 99.9 2.1E-25 4.5E-30 155.2 16.0 155 15-171 2-167 (168)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1.4E-25 3E-30 156.8 14.3 156 9-169 10-172 (173)
131 KOG0070 GTP-binding ADP-ribosy 99.9 2.3E-25 5E-30 150.6 13.5 160 9-173 13-179 (181)
132 PTZ00099 rab6; Provisional 99.9 1.9E-24 4.2E-29 151.0 17.0 141 36-176 3-146 (176)
133 cd01898 Obg Obg subfamily. Th 99.9 7.1E-25 1.5E-29 152.8 14.2 155 15-171 2-170 (170)
134 TIGR00231 small_GTP small GTP- 99.9 6.8E-24 1.5E-28 145.6 16.9 156 13-168 1-160 (161)
135 TIGR02528 EutP ethanolamine ut 99.9 2.1E-24 4.6E-29 146.2 12.3 133 15-168 2-141 (142)
136 cd04171 SelB SelB subfamily. 99.9 7.5E-24 1.6E-28 146.6 15.1 150 14-169 1-163 (164)
137 cd01878 HflX HflX subfamily. 99.9 5.9E-24 1.3E-28 152.4 15.0 155 11-171 39-204 (204)
138 PRK15494 era GTPase Era; Provi 99.9 1.1E-23 2.4E-28 161.0 16.4 171 11-187 50-231 (339)
139 TIGR00436 era GTP-binding prot 99.9 1.2E-23 2.6E-28 156.7 15.4 168 15-187 2-179 (270)
140 COG1100 GTPase SAR1 and relate 99.9 2.9E-23 6.2E-28 150.4 16.9 165 11-175 3-188 (219)
141 PRK04213 GTP-binding protein; 99.9 9.4E-24 2E-28 151.1 12.5 156 11-176 7-196 (201)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 2.1E-23 4.5E-28 148.5 13.6 146 14-162 3-172 (194)
143 PRK12299 obgE GTPase CgtA; Rev 99.9 5.5E-23 1.2E-27 156.3 15.7 160 14-175 159-331 (335)
144 cd00882 Ras_like_GTPase Ras-li 99.9 9.9E-23 2.2E-27 138.7 15.3 150 18-168 1-156 (157)
145 cd01879 FeoB Ferrous iron tran 99.9 1.1E-22 2.5E-27 139.9 14.8 147 18-171 1-156 (158)
146 KOG0071 GTP-binding ADP-ribosy 99.9 9.2E-23 2E-27 131.4 13.0 157 11-172 15-178 (180)
147 PF08477 Miro: Miro-like prote 99.9 4.1E-23 9E-28 135.7 11.6 114 15-128 1-119 (119)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2E-22 4.2E-27 140.1 15.6 155 15-172 2-166 (168)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.9E-22 4.1E-27 138.5 13.9 147 14-171 2-156 (157)
150 TIGR01393 lepA GTP-binding pro 99.9 3E-22 6.4E-27 162.6 15.8 157 14-173 4-181 (595)
151 PF02421 FeoB_N: Ferrous iron 99.9 6.7E-23 1.4E-27 138.6 9.9 147 14-167 1-156 (156)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.7E-22 1.2E-26 155.9 15.7 153 11-173 201-361 (442)
153 TIGR02729 Obg_CgtA Obg family 99.9 4.5E-22 9.7E-27 151.2 14.5 156 14-171 158-328 (329)
154 cd01881 Obg_like The Obg-like 99.9 2.4E-22 5.1E-27 140.7 11.9 151 18-170 1-175 (176)
155 PRK03003 GTP-binding protein D 99.9 6.5E-22 1.4E-26 157.8 15.0 155 13-173 38-200 (472)
156 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-21 2.4E-26 150.3 15.4 152 12-170 188-350 (351)
157 cd01889 SelB_euk SelB subfamil 99.9 1.1E-21 2.3E-26 139.5 14.3 157 14-173 1-187 (192)
158 cd01894 EngA1 EngA1 subfamily. 99.9 6.5E-22 1.4E-26 135.9 12.4 147 17-170 1-156 (157)
159 KOG0075 GTP-binding ADP-ribosy 99.9 2.7E-22 5.9E-27 130.2 9.0 157 12-172 19-182 (186)
160 PRK05291 trmE tRNA modificatio 99.9 8.3E-22 1.8E-26 155.8 13.6 150 12-173 214-371 (449)
161 KOG1673 Ras GTPases [General f 99.9 8.8E-22 1.9E-26 129.0 11.3 165 10-174 17-188 (205)
162 cd00881 GTP_translation_factor 99.9 1.6E-21 3.5E-26 137.9 13.6 155 15-172 1-187 (189)
163 cd01888 eIF2_gamma eIF2-gamma 99.9 2.3E-21 5E-26 138.7 14.2 113 62-175 83-202 (203)
164 PRK15467 ethanolamine utilizat 99.9 1.3E-21 2.9E-26 134.6 12.4 140 15-173 3-148 (158)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 4.5E-21 9.6E-26 149.4 16.8 159 15-177 160-332 (424)
166 PRK03003 GTP-binding protein D 99.9 1.1E-21 2.4E-26 156.5 13.4 157 11-173 209-383 (472)
167 PRK00454 engB GTP-binding prot 99.9 4.6E-21 1E-25 136.6 15.1 161 7-173 18-195 (196)
168 cd04163 Era Era subfamily. Er 99.9 8.1E-21 1.7E-25 131.5 15.4 155 12-170 2-167 (168)
169 PRK00089 era GTPase Era; Revie 99.9 1.1E-20 2.4E-25 142.5 16.9 171 11-186 3-185 (292)
170 TIGR03594 GTPase_EngA ribosome 99.9 8.1E-21 1.8E-25 150.4 16.6 160 10-173 169-345 (429)
171 KOG0074 GTP-binding ADP-ribosy 99.9 1.5E-21 3.4E-26 125.9 10.1 157 10-170 14-177 (185)
172 PRK12298 obgE GTPase CgtA; Rev 99.9 7E-21 1.5E-25 147.4 14.8 162 15-178 161-339 (390)
173 PRK12296 obgE GTPase CgtA; Rev 99.9 8.4E-21 1.8E-25 149.7 14.5 160 14-175 160-343 (500)
174 TIGR03598 GTPase_YsxC ribosome 99.9 8.4E-21 1.8E-25 133.4 13.1 150 6-161 11-179 (179)
175 TIGR00487 IF-2 translation ini 99.9 3.9E-20 8.6E-25 149.7 17.6 156 9-169 83-247 (587)
176 cd01895 EngA2 EngA2 subfamily. 99.9 3.2E-20 6.9E-25 129.4 14.9 154 13-170 2-173 (174)
177 PF00009 GTP_EFTU: Elongation 99.9 3.8E-21 8.2E-26 136.1 9.4 158 12-172 2-187 (188)
178 PRK11058 GTPase HflX; Provisio 99.9 4E-20 8.6E-25 144.8 15.7 157 14-176 198-366 (426)
179 TIGR03594 GTPase_EngA ribosome 99.9 2.1E-20 4.6E-25 148.1 14.2 153 15-174 1-162 (429)
180 PRK09554 feoB ferrous iron tra 99.9 5.8E-20 1.3E-24 152.7 17.3 155 11-172 1-168 (772)
181 COG1159 Era GTPase [General fu 99.9 3.7E-20 7.9E-25 134.8 14.0 173 9-186 2-186 (298)
182 PRK05433 GTP-binding protein L 99.8 3.4E-20 7.3E-25 150.8 15.1 158 13-173 7-185 (600)
183 TIGR00475 selB selenocysteine- 99.8 9.6E-20 2.1E-24 147.9 17.1 153 14-174 1-168 (581)
184 KOG3883 Ras family small GTPas 99.8 2.8E-19 6.1E-24 117.1 15.2 167 11-178 7-181 (198)
185 PRK00093 GTP-binding protein D 99.8 4.6E-20 9.9E-25 146.4 13.9 149 14-171 2-161 (435)
186 CHL00189 infB translation init 99.8 8.2E-20 1.8E-24 150.0 15.4 159 10-171 241-409 (742)
187 PRK00093 GTP-binding protein D 99.8 1.9E-19 4.1E-24 142.8 16.7 158 11-172 171-344 (435)
188 KOG0076 GTP-binding ADP-ribosy 99.8 1.1E-20 2.5E-25 126.1 8.0 160 11-174 15-189 (197)
189 PRK05306 infB translation init 99.8 2.9E-19 6.3E-24 148.0 17.3 158 8-170 285-450 (787)
190 PRK09518 bifunctional cytidyla 99.8 1.7E-19 3.8E-24 150.1 16.2 156 11-173 273-437 (712)
191 TIGR00437 feoB ferrous iron tr 99.8 2.5E-19 5.4E-24 145.7 16.1 145 20-171 1-154 (591)
192 PRK12317 elongation factor 1-a 99.8 1.4E-19 3E-24 142.9 13.9 155 10-164 3-197 (425)
193 KOG0072 GTP-binding ADP-ribosy 99.8 3.6E-20 7.8E-25 120.0 7.9 158 12-174 17-181 (182)
194 cd00880 Era_like Era (E. coli 99.8 2.8E-19 6E-24 122.7 12.6 149 18-170 1-162 (163)
195 TIGR00483 EF-1_alpha translati 99.8 3.6E-19 7.7E-24 140.6 14.2 154 10-163 4-198 (426)
196 cd04105 SR_beta Signal recogni 99.8 3.4E-19 7.4E-24 127.4 12.8 116 15-131 2-123 (203)
197 PRK09518 bifunctional cytidyla 99.8 2.8E-19 6E-24 148.9 14.2 157 11-173 448-622 (712)
198 cd01876 YihA_EngB The YihA (En 99.8 7.8E-19 1.7E-23 121.8 13.6 149 15-171 1-170 (170)
199 PF10662 PduV-EutP: Ethanolami 99.8 4.4E-19 9.5E-24 117.5 11.4 134 15-168 3-142 (143)
200 PRK10218 GTP-binding protein; 99.8 2E-18 4.4E-23 140.1 17.5 160 12-174 4-197 (607)
201 COG0486 ThdF Predicted GTPase 99.8 7.2E-19 1.6E-23 135.1 13.4 155 11-174 215-378 (454)
202 COG1160 Predicted GTPases [Gen 99.8 5.4E-19 1.2E-23 135.4 11.7 153 14-172 4-165 (444)
203 COG2229 Predicted GTPase [Gene 99.8 3.9E-18 8.4E-23 115.5 14.3 159 7-170 4-176 (187)
204 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.4E-19 1.2E-23 127.0 10.9 146 15-162 1-184 (208)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 1.4E-18 3E-23 141.1 14.2 157 15-174 3-193 (594)
206 KOG1423 Ras-like GTPase ERA [C 99.8 2.2E-18 4.7E-23 125.4 13.4 180 8-190 67-289 (379)
207 KOG4423 GTP-binding protein-li 99.8 4.4E-21 9.6E-26 129.4 -0.6 165 11-175 23-197 (229)
208 KOG1707 Predicted Ras related/ 99.8 3.5E-19 7.6E-24 139.1 9.7 176 9-186 5-189 (625)
209 cd01896 DRG The developmentall 99.8 5.8E-18 1.3E-22 123.4 13.9 150 15-171 2-225 (233)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-17 2.3E-22 118.6 14.0 146 12-160 1-171 (195)
211 TIGR03680 eif2g_arch translati 99.8 7E-18 1.5E-22 132.3 13.7 160 11-172 2-196 (406)
212 TIGR00491 aIF-2 translation in 99.8 7.8E-18 1.7E-22 136.3 14.3 152 13-170 4-214 (590)
213 COG1160 Predicted GTPases [Gen 99.8 1.3E-17 2.9E-22 127.9 14.7 157 12-172 177-351 (444)
214 PRK04000 translation initiatio 99.8 1E-17 2.2E-22 131.3 14.1 161 9-172 5-201 (411)
215 cd01883 EF1_alpha Eukaryotic e 99.8 4E-18 8.8E-23 123.3 10.0 146 15-162 1-195 (219)
216 cd04167 Snu114p Snu114p subfam 99.8 1.8E-17 3.8E-22 119.6 12.5 113 15-130 2-136 (213)
217 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 3.7E-17 7.9E-22 117.8 13.7 157 15-173 1-177 (232)
218 TIGR00485 EF-Tu translation el 99.8 2.2E-17 4.7E-22 129.2 13.6 152 4-158 3-179 (394)
219 COG0370 FeoB Fe2+ transport sy 99.8 5.5E-17 1.2E-21 129.8 15.5 159 11-176 1-168 (653)
220 PRK10512 selenocysteinyl-tRNA- 99.8 8.6E-17 1.9E-21 131.3 17.0 155 14-173 1-167 (614)
221 PRK12736 elongation factor Tu; 99.7 6.2E-17 1.3E-21 126.5 14.6 164 6-172 5-201 (394)
222 PRK12735 elongation factor Tu; 99.7 7.9E-17 1.7E-21 126.0 15.2 163 7-172 6-203 (396)
223 cd04104 p47_IIGP_like p47 (47- 99.7 6.9E-17 1.5E-21 115.1 12.9 160 13-179 1-191 (197)
224 cd04168 TetM_like Tet(M)-like 99.7 3.9E-17 8.5E-22 119.2 11.9 116 15-133 1-132 (237)
225 cd04165 GTPBP1_like GTPBP1-lik 99.7 9.8E-17 2.1E-21 116.1 13.8 151 15-168 1-219 (224)
226 cd04169 RF3 RF3 subfamily. Pe 99.7 1.2E-16 2.6E-21 118.5 13.6 118 14-134 3-140 (267)
227 PRK04004 translation initiatio 99.7 2.1E-16 4.5E-21 128.5 16.0 154 10-169 3-215 (586)
228 KOG1489 Predicted GTP-binding 99.7 3.8E-16 8.2E-21 114.4 13.0 153 15-170 198-365 (366)
229 PLN00043 elongation factor 1-a 99.7 6.1E-16 1.3E-20 122.3 13.8 151 9-162 3-203 (447)
230 CHL00071 tufA elongation facto 99.7 8.3E-16 1.8E-20 120.8 14.5 150 8-160 7-181 (409)
231 COG2262 HflX GTPases [General 99.7 2.6E-15 5.6E-20 113.8 16.1 172 9-186 188-370 (411)
232 COG0218 Predicted GTPase [Gene 99.7 2.9E-15 6.3E-20 103.8 15.0 160 8-173 19-198 (200)
233 KOG0462 Elongation factor-type 99.7 7.6E-16 1.6E-20 120.0 13.1 170 11-185 58-246 (650)
234 cd04170 EF-G_bact Elongation f 99.7 5.8E-16 1.3E-20 115.4 12.1 150 15-167 1-168 (268)
235 cd01850 CDC_Septin CDC/Septin. 99.7 1.1E-15 2.4E-20 113.8 13.5 141 12-156 3-186 (276)
236 TIGR02034 CysN sulfate adenyly 99.7 5.5E-16 1.2E-20 121.6 12.3 147 14-162 1-187 (406)
237 cd01886 EF-G Elongation factor 99.7 6.5E-16 1.4E-20 114.7 11.9 115 15-132 1-131 (270)
238 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.6E-15 9.9E-20 105.7 15.8 166 14-181 1-193 (196)
239 PRK05124 cysN sulfate adenylyl 99.7 5.6E-16 1.2E-20 123.4 11.9 152 10-163 24-216 (474)
240 COG1084 Predicted GTPase [Gene 99.7 1.9E-15 4.1E-20 111.4 13.4 165 5-172 160-336 (346)
241 PLN03126 Elongation factor Tu; 99.7 1.2E-15 2.6E-20 121.2 13.1 149 8-159 76-249 (478)
242 PRK00049 elongation factor Tu; 99.7 3.1E-15 6.8E-20 117.0 15.1 163 6-171 5-202 (396)
243 cd01885 EF2 EF2 (for archaea a 99.7 6.5E-16 1.4E-20 111.4 9.5 113 15-130 2-138 (222)
244 KOG0077 Vesicle coat complex C 99.7 3.8E-16 8.2E-21 103.8 7.4 155 11-170 18-191 (193)
245 PRK13351 elongation factor G; 99.7 2.5E-15 5.5E-20 125.2 13.8 118 11-131 6-139 (687)
246 COG5256 TEF1 Translation elong 99.6 2.7E-15 5.8E-20 113.7 12.1 154 9-162 3-201 (428)
247 PLN03127 Elongation factor Tu; 99.6 8.1E-15 1.8E-19 115.9 15.3 163 7-172 55-252 (447)
248 cd01899 Ygr210 Ygr210 subfamil 99.6 8.7E-15 1.9E-19 110.7 14.7 166 16-182 1-279 (318)
249 PRK05506 bifunctional sulfate 99.6 4.6E-15 9.9E-20 122.5 13.7 152 9-162 20-211 (632)
250 PTZ00141 elongation factor 1- 99.6 6E-15 1.3E-19 116.8 13.7 151 10-162 4-203 (446)
251 PRK00741 prfC peptide chain re 99.6 4.3E-15 9.3E-20 119.4 12.4 120 11-133 8-147 (526)
252 PF01926 MMR_HSR1: 50S ribosom 99.6 3.2E-15 6.9E-20 97.6 9.2 107 15-126 1-116 (116)
253 COG3596 Predicted GTPase [Gene 99.6 4.9E-15 1.1E-19 106.9 10.3 171 7-180 33-230 (296)
254 PF09439 SRPRB: Signal recogni 99.6 3.3E-15 7.1E-20 103.4 8.7 117 13-132 3-127 (181)
255 COG0481 LepA Membrane GTPase L 99.6 2.5E-14 5.5E-19 110.0 14.3 159 14-175 10-189 (603)
256 TIGR00503 prfC peptide chain r 99.6 1.1E-14 2.4E-19 117.1 12.0 119 11-132 9-147 (527)
257 KOG1191 Mitochondrial GTPase [ 99.6 6.7E-15 1.4E-19 113.6 10.1 163 12-175 267-453 (531)
258 COG1163 DRG Predicted GTPase [ 99.6 6E-14 1.3E-18 103.3 14.5 155 11-172 61-289 (365)
259 TIGR00484 EF-G translation elo 99.6 1.9E-14 4.1E-19 119.9 12.3 119 12-133 9-143 (689)
260 PRK12739 elongation factor G; 99.6 4.1E-14 8.9E-19 117.9 13.9 118 11-131 6-139 (691)
261 PTZ00327 eukaryotic translatio 99.6 6E-14 1.3E-18 110.9 13.1 160 11-172 32-233 (460)
262 COG4917 EutP Ethanolamine util 99.6 2.6E-14 5.7E-19 90.8 7.7 136 15-169 3-143 (148)
263 PRK09602 translation-associate 99.5 5.5E-13 1.2E-17 103.8 15.2 64 117-182 217-281 (396)
264 COG0536 Obg Predicted GTPase [ 99.5 1.6E-13 3.6E-18 101.8 11.6 158 15-175 161-336 (369)
265 COG0532 InfB Translation initi 99.5 8.3E-13 1.8E-17 103.4 15.6 154 12-171 4-169 (509)
266 PRK00007 elongation factor G; 99.5 2.2E-13 4.7E-18 113.6 12.0 119 12-133 9-143 (693)
267 PRK12740 elongation factor G; 99.5 2.7E-13 5.9E-18 113.0 12.1 110 19-131 1-126 (668)
268 KOG0090 Signal recognition par 99.5 2E-13 4.3E-18 94.9 9.2 152 14-171 39-238 (238)
269 KOG0458 Elongation factor 1 al 99.5 8.9E-13 1.9E-17 103.8 13.6 158 5-162 169-372 (603)
270 TIGR00490 aEF-2 translation el 99.5 3.1E-13 6.8E-18 113.0 10.5 118 11-131 17-152 (720)
271 PRK09866 hypothetical protein; 99.5 3E-12 6.6E-17 102.9 14.8 107 62-169 230-350 (741)
272 KOG1490 GTP-binding protein CR 99.5 1.8E-13 4E-18 105.9 7.5 168 3-172 158-341 (620)
273 PF04548 AIG1: AIG1 family; I 99.4 9E-13 1.9E-17 94.9 10.1 169 14-182 1-196 (212)
274 KOG1145 Mitochondrial translat 99.4 3.9E-12 8.4E-17 99.7 13.8 155 9-170 149-314 (683)
275 smart00010 small_GTPase Small 99.4 1.4E-13 3E-18 90.7 4.9 113 14-161 1-115 (124)
276 KOG3905 Dynein light intermedi 99.4 5.2E-12 1.1E-16 93.3 13.0 163 10-175 49-293 (473)
277 PRK13768 GTPase; Provisional 99.4 1.5E-12 3.2E-17 96.1 9.4 111 63-173 98-248 (253)
278 COG2895 CysN GTPases - Sulfate 99.4 3.5E-12 7.5E-17 95.1 11.2 150 10-161 3-192 (431)
279 KOG1707 Predicted Ras related/ 99.4 1.8E-11 4E-16 96.5 15.6 164 8-175 420-586 (625)
280 TIGR00991 3a0901s02IAP34 GTP-b 99.4 4.1E-12 8.8E-17 94.8 11.4 121 8-130 33-166 (313)
281 cd01853 Toc34_like Toc34-like 99.4 4.5E-12 9.8E-17 93.0 11.3 121 8-130 26-162 (249)
282 TIGR00101 ureG urease accessor 99.4 1.4E-11 3.1E-16 87.6 13.2 99 62-172 92-196 (199)
283 COG1217 TypA Predicted membran 99.4 1.4E-11 2.9E-16 95.1 13.6 161 12-175 4-198 (603)
284 TIGR00157 ribosome small subun 99.4 2.7E-12 5.8E-17 94.3 9.5 95 73-169 24-120 (245)
285 cd00066 G-alpha G protein alph 99.4 1.1E-11 2.5E-16 94.3 11.9 114 60-173 159-312 (317)
286 PF05049 IIGP: Interferon-indu 99.4 3.2E-12 6.9E-17 97.8 8.7 160 10-175 32-221 (376)
287 PRK09435 membrane ATPase/prote 99.3 2E-11 4.4E-16 92.7 12.0 102 61-172 148-260 (332)
288 PLN00116 translation elongatio 99.3 3.9E-12 8.4E-17 108.0 9.0 118 10-130 16-163 (843)
289 PF05783 DLIC: Dynein light in 99.3 5.4E-11 1.2E-15 94.2 14.5 165 9-176 21-268 (472)
290 cd01882 BMS1 Bms1. Bms1 is an 99.3 4.4E-11 9.5E-16 86.9 12.6 140 10-160 36-184 (225)
291 smart00275 G_alpha G protein a 99.3 1.1E-11 2.4E-16 95.1 9.6 114 60-173 182-335 (342)
292 PTZ00416 elongation factor 2; 99.3 1.2E-11 2.6E-16 104.9 9.7 116 12-130 18-157 (836)
293 KOG3886 GTP-binding protein [S 99.3 9.4E-12 2E-16 87.7 6.7 142 12-157 3-164 (295)
294 KOG1532 GTPase XAB1, interacts 99.3 5.9E-11 1.3E-15 85.9 10.4 111 61-173 115-265 (366)
295 TIGR02836 spore_IV_A stage IV 99.3 2.5E-10 5.4E-15 87.8 14.1 162 11-175 15-237 (492)
296 TIGR00073 hypB hydrogenase acc 99.3 1.6E-10 3.4E-15 83.1 11.9 150 11-170 20-205 (207)
297 PRK14845 translation initiatio 99.2 1.6E-10 3.4E-15 98.9 13.3 102 63-170 527-671 (1049)
298 PRK07560 elongation factor EF- 99.2 5.5E-11 1.2E-15 99.9 9.6 116 12-130 19-152 (731)
299 PF03029 ATP_bind_1: Conserved 99.2 1.9E-11 4.1E-16 89.2 5.7 109 63-171 92-236 (238)
300 COG0050 TufB GTPases - transla 99.2 2.4E-10 5.2E-15 83.6 10.8 179 7-190 6-217 (394)
301 COG1120 FepC ABC-type cobalami 99.2 1.1E-11 2.4E-16 90.3 3.9 43 149-198 133-175 (258)
302 PTZ00258 GTP-binding protein; 99.2 4.4E-10 9.6E-15 87.0 12.8 84 11-96 19-126 (390)
303 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 8.7E-12 1.9E-16 90.4 3.1 45 147-198 132-176 (254)
304 COG0480 FusA Translation elong 99.2 3.5E-10 7.7E-15 93.3 12.4 121 10-133 7-144 (697)
305 KOG0461 Selenocysteine-specifi 99.2 6.9E-10 1.5E-14 82.9 11.7 162 11-175 5-196 (522)
306 PF00735 Septin: Septin; Inte 99.1 1.4E-09 3.1E-14 81.3 12.6 139 13-154 4-183 (281)
307 TIGR00750 lao LAO/AO transport 99.1 8.7E-10 1.9E-14 83.5 11.4 101 61-171 126-237 (300)
308 PF00350 Dynamin_N: Dynamin fa 99.1 4E-10 8.7E-15 78.2 8.8 63 63-127 102-168 (168)
309 PRK09601 GTP-binding protein Y 99.1 3E-09 6.4E-14 81.6 13.1 81 14-96 3-107 (364)
310 COG4108 PrfC Peptide chain rel 99.1 6.9E-10 1.5E-14 85.2 9.4 136 12-152 11-168 (528)
311 smart00053 DYNc Dynamin, GTPas 99.1 2.3E-09 5.1E-14 78.0 11.5 70 62-133 125-208 (240)
312 KOG0705 GTPase-activating prot 99.1 2.5E-10 5.4E-15 89.7 6.7 158 10-174 27-191 (749)
313 TIGR00993 3a0901s04IAP86 chlor 99.1 2.9E-09 6.2E-14 86.5 12.1 120 11-131 116-250 (763)
314 COG3276 SelB Selenocysteine-sp 99.1 2.1E-09 4.5E-14 82.8 10.7 156 15-172 2-162 (447)
315 PF03308 ArgK: ArgK protein; 99.1 3.9E-10 8.6E-15 81.6 6.1 101 61-171 121-229 (266)
316 COG5257 GCD11 Translation init 99.1 1.3E-09 2.9E-14 80.6 8.7 162 11-174 8-204 (415)
317 COG1703 ArgK Putative periplas 99.0 3.2E-09 6.9E-14 78.1 10.5 102 61-172 143-254 (323)
318 KOG0082 G-protein alpha subuni 99.0 1.9E-09 4.1E-14 81.8 9.5 115 59-173 192-345 (354)
319 COG0378 HypB Ni2+-binding GTPa 99.0 8E-09 1.7E-13 71.6 11.1 77 88-171 120-200 (202)
320 cd01855 YqeH YqeH. YqeH is an 99.0 5.1E-09 1.1E-13 74.2 9.3 103 75-182 24-135 (190)
321 KOG0468 U5 snRNP-specific prot 99.0 1.9E-09 4.1E-14 86.6 7.5 116 11-129 126-261 (971)
322 KOG1144 Translation initiation 99.0 3.7E-09 8E-14 85.9 8.9 159 10-171 472-686 (1064)
323 KOG0410 Predicted GTP binding 99.0 4.3E-09 9.4E-14 78.1 8.4 156 11-177 176-346 (410)
324 PRK12289 GTPase RsgA; Reviewed 99.0 5E-09 1.1E-13 80.6 9.1 92 77-170 81-173 (352)
325 cd01859 MJ1464 MJ1464. This f 99.0 3.8E-09 8.3E-14 72.5 7.7 94 77-173 4-97 (156)
326 PRK10463 hydrogenase nickel in 99.0 6.8E-09 1.5E-13 77.2 9.2 54 117-170 230-287 (290)
327 cd01854 YjeQ_engC YjeQ/EngC. 98.9 4.7E-09 1E-13 79.0 8.4 88 80-169 73-161 (287)
328 KOG3887 Predicted small GTPase 98.9 1.6E-08 3.4E-13 72.3 9.6 156 13-172 27-202 (347)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.6E-09 1.4E-13 70.1 6.1 54 15-72 85-138 (141)
330 KOG0460 Mitochondrial translat 98.9 3.1E-08 6.6E-13 74.1 9.9 176 8-187 49-258 (449)
331 COG3638 ABC-type phosphate/pho 98.9 1.1E-09 2.3E-14 78.0 2.1 43 148-197 141-183 (258)
332 PRK00098 GTPase RsgA; Reviewed 98.9 1.4E-08 3.1E-13 76.8 8.2 85 82-168 77-163 (298)
333 COG1126 GlnQ ABC-type polar am 98.9 1.2E-08 2.6E-13 71.9 7.2 37 153-196 135-171 (240)
334 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.6E-08 3.5E-13 69.5 7.3 56 12-71 101-156 (157)
335 cd01900 YchF YchF subfamily. 98.8 6.5E-09 1.4E-13 77.2 5.6 79 16-96 1-103 (274)
336 COG5019 CDC3 Septin family pro 98.8 2E-07 4.3E-12 70.6 13.0 138 11-151 21-200 (373)
337 PRK12288 GTPase RsgA; Reviewed 98.8 3.3E-08 7.2E-13 76.1 9.1 87 82-170 117-206 (347)
338 cd04178 Nucleostemin_like Nucl 98.8 2E-08 4.4E-13 69.8 6.8 56 12-71 116-171 (172)
339 KOG2655 Septin family protein 98.8 3.7E-07 8.1E-12 69.6 13.7 142 12-156 20-201 (366)
340 COG0012 Predicted GTPase, prob 98.8 4E-07 8.7E-12 69.4 13.1 83 13-96 2-108 (372)
341 cd01855 YqeH YqeH. YqeH is an 98.7 2.5E-08 5.5E-13 70.7 5.9 56 13-71 127-189 (190)
342 cd01856 YlqF YlqF. Proteins o 98.7 4.5E-08 9.7E-13 68.2 7.0 58 11-72 113-170 (171)
343 COG1116 TauB ABC-type nitrate/ 98.7 4.7E-08 1E-12 70.5 7.0 37 152-195 128-164 (248)
344 TIGR03597 GTPase_YqeH ribosome 98.7 5.3E-08 1.1E-12 75.6 7.6 94 72-170 50-151 (360)
345 KOG1486 GTP-binding protein DR 98.7 1.1E-06 2.4E-11 63.4 13.1 89 11-101 60-155 (364)
346 COG1136 SalX ABC-type antimicr 98.7 1.2E-07 2.5E-12 68.1 8.3 52 139-197 123-178 (226)
347 COG1131 CcmA ABC-type multidru 98.7 2.1E-07 4.5E-12 70.3 10.0 52 140-198 119-173 (293)
348 KOG0459 Polypeptide release fa 98.7 2.9E-08 6.3E-13 75.7 5.1 157 9-165 75-279 (501)
349 cd01859 MJ1464 MJ1464. This f 98.7 8.7E-08 1.9E-12 65.7 7.1 56 12-71 100-155 (156)
350 COG1124 DppF ABC-type dipeptid 98.7 8E-08 1.7E-12 68.9 6.5 39 153-198 140-178 (252)
351 COG2884 FtsE Predicted ATPase 98.7 6.4E-08 1.4E-12 66.9 5.7 39 153-198 136-174 (223)
352 KOG2486 Predicted GTPase [Gene 98.7 3.6E-08 7.9E-13 71.8 4.6 153 11-170 134-314 (320)
353 TIGR03596 GTPase_YlqF ribosome 98.6 1.2E-07 2.6E-12 71.1 7.2 58 11-72 116-173 (276)
354 COG1117 PstB ABC-type phosphat 98.6 1.4E-07 3.1E-12 66.4 7.0 39 153-196 146-184 (253)
355 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.6E-07 3.5E-12 70.8 7.8 59 11-73 119-177 (287)
356 cd03222 ABC_RNaseL_inhibitor T 98.6 1.8E-07 3.9E-12 65.3 7.4 31 162-197 77-107 (177)
357 COG1161 Predicted GTPases [Gen 98.6 1.1E-07 2.4E-12 72.6 6.8 59 11-73 130-188 (322)
358 COG0488 Uup ATPase components 98.6 2.8E-07 6E-12 74.6 8.9 54 138-198 419-476 (530)
359 cd03293 ABC_NrtD_SsuB_transpor 98.6 9.7E-07 2.1E-11 64.0 11.0 39 153-198 130-168 (220)
360 cd01856 YlqF YlqF. Proteins o 98.6 3E-07 6.5E-12 64.0 7.9 88 79-171 13-100 (171)
361 KOG1954 Endocytosis/signaling 98.6 2.4E-07 5.1E-12 70.3 7.5 118 12-133 57-227 (532)
362 COG3839 MalK ABC-type sugar tr 98.6 3.1E-07 6.6E-12 69.9 8.3 51 139-196 115-168 (338)
363 COG0411 LivG ABC-type branched 98.6 5E-08 1.1E-12 70.0 3.5 47 138-186 130-179 (250)
364 COG0488 Uup ATPase components 98.6 1.9E-07 4E-12 75.6 7.2 52 139-197 136-189 (530)
365 PF09547 Spore_IV_A: Stage IV 98.6 6.5E-06 1.4E-10 63.9 14.9 161 12-175 16-237 (492)
366 cd01849 YlqF_related_GTPase Yl 98.6 2.6E-07 5.5E-12 63.3 6.6 57 11-71 98-154 (155)
367 cd01849 YlqF_related_GTPase Yl 98.5 7.9E-07 1.7E-11 60.9 8.8 83 87-171 1-84 (155)
368 KOG1143 Predicted translation 98.5 8.1E-07 1.8E-11 67.6 9.0 153 11-166 165-382 (591)
369 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4.5E-07 9.7E-12 61.1 7.1 76 81-159 7-84 (141)
370 PRK13537 nodulation ABC transp 98.5 2.6E-07 5.7E-12 70.3 6.4 40 152-198 136-175 (306)
371 KOG1547 Septin CDC10 and relat 98.5 3.4E-06 7.4E-11 60.5 11.4 140 13-156 46-227 (336)
372 KOG0467 Translation elongation 98.5 5E-07 1.1E-11 74.0 8.1 115 10-128 6-135 (887)
373 cd03261 ABC_Org_Solvent_Resist 98.5 1.5E-06 3.3E-11 63.7 10.1 39 153-198 135-173 (235)
374 TIGR01166 cbiO cobalt transpor 98.5 7.9E-07 1.7E-11 63.0 8.3 39 153-198 126-164 (190)
375 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.5 8.2E-07 1.8E-11 60.1 7.9 29 164-197 78-106 (144)
376 COG1135 AbcC ABC-type metal io 98.5 7E-07 1.5E-11 66.4 8.0 40 152-198 139-178 (339)
377 KOG0464 Elongation factor G [T 98.5 2.6E-07 5.7E-12 71.1 5.8 135 11-148 35-185 (753)
378 COG3842 PotA ABC-type spermidi 98.5 1.8E-07 3.9E-12 71.5 4.9 43 147-196 129-171 (352)
379 TIGR01188 drrA daunorubicin re 98.5 7.9E-07 1.7E-11 67.6 8.4 40 152-198 122-161 (302)
380 cd01858 NGP_1 NGP-1. Autoanti 98.5 8.5E-07 1.8E-11 60.9 7.8 89 82-171 5-94 (157)
381 TIGR03608 L_ocin_972_ABC putat 98.5 2.1E-06 4.5E-11 61.6 10.1 32 162-198 140-171 (206)
382 cd03259 ABC_Carb_Solutes_like 98.5 2.1E-06 4.5E-11 62.0 10.0 39 153-198 129-167 (213)
383 COG2274 SunT ABC-type bacterio 98.5 1.4E-07 3.1E-12 78.7 4.2 37 155-198 610-646 (709)
384 COG5192 BMS1 GTP-binding prote 98.5 2.5E-06 5.5E-11 68.2 10.8 138 8-156 64-210 (1077)
385 COG4619 ABC-type uncharacteriz 98.5 5.8E-07 1.3E-11 61.1 6.3 33 159-196 136-168 (223)
386 cd03215 ABC_Carb_Monos_II This 98.5 5.3E-07 1.2E-11 63.5 6.5 31 163-198 111-141 (182)
387 cd03218 ABC_YhbG The ABC trans 98.5 2.7E-06 5.8E-11 62.2 10.4 32 162-198 139-170 (232)
388 PF03193 DUF258: Protein of un 98.5 2E-07 4.3E-12 63.6 4.1 58 14-74 36-99 (161)
389 cd03265 ABC_DrrA DrrA is the A 98.5 1.5E-06 3.3E-11 63.0 9.0 39 153-198 130-168 (220)
390 TIGR03596 GTPase_YlqF ribosome 98.5 1.2E-06 2.5E-11 65.8 8.5 89 80-173 16-104 (276)
391 cd03216 ABC_Carb_Monos_I This 98.5 5.4E-07 1.2E-11 62.3 6.2 36 155-197 83-118 (163)
392 COG1618 Predicted nucleotide k 98.5 2.3E-05 5E-10 53.0 13.5 58 10-70 2-59 (179)
393 COG5258 GTPBP1 GTPase [General 98.5 5.4E-07 1.2E-11 68.7 6.5 160 9-172 113-338 (527)
394 PRK11264 putative amino-acid A 98.5 2.1E-06 4.6E-11 63.5 9.6 38 153-197 143-180 (250)
395 TIGR03864 PQQ_ABC_ATP ABC tran 98.5 3.3E-06 7.1E-11 62.0 10.5 32 162-198 138-169 (236)
396 PRK13536 nodulation factor exp 98.5 2.5E-06 5.3E-11 65.9 10.2 39 153-198 171-209 (340)
397 COG1127 Ttg2A ABC-type transpo 98.4 8.6E-07 1.9E-11 63.6 7.0 40 150-196 141-180 (263)
398 TIGR00960 3a0501s02 Type II (G 98.4 2E-06 4.4E-11 62.2 9.2 33 161-198 143-175 (216)
399 PRK12288 GTPase RsgA; Reviewed 98.4 6.2E-07 1.3E-11 69.1 6.7 57 16-75 208-270 (347)
400 KOG1491 Predicted GTP-binding 98.4 1.3E-06 2.7E-11 65.6 8.0 86 11-96 18-125 (391)
401 cd03269 ABC_putative_ATPase Th 98.4 2.1E-06 4.5E-11 61.8 9.1 38 154-198 128-165 (210)
402 cd03301 ABC_MalK_N The N-termi 98.4 4.7E-06 1E-10 60.1 10.8 39 153-198 129-167 (213)
403 cd03262 ABC_HisP_GlnQ_permease 98.4 2.3E-06 4.9E-11 61.7 9.2 38 153-197 134-171 (213)
404 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.4 2.7E-06 5.9E-11 61.6 9.6 39 153-198 139-177 (218)
405 PRK11022 dppD dipeptide transp 98.4 1.5E-06 3.2E-11 66.7 8.5 40 152-198 151-190 (326)
406 cd03292 ABC_FtsE_transporter F 98.4 2.4E-06 5.1E-11 61.7 9.1 33 161-198 141-173 (214)
407 COG1122 CbiO ABC-type cobalt t 98.4 3E-07 6.5E-12 66.9 4.3 42 149-197 133-174 (235)
408 PRK13638 cbiO cobalt transport 98.4 5.8E-07 1.3E-11 67.3 6.0 39 153-198 135-173 (271)
409 TIGR03522 GldA_ABC_ATP gliding 98.4 2.3E-06 4.9E-11 65.1 9.3 40 152-198 131-170 (301)
410 cd03226 ABC_cobalt_CbiO_domain 98.4 4.5E-06 9.8E-11 59.9 10.4 33 161-198 131-163 (205)
411 TIGR02673 FtsE cell division A 98.4 3.5E-06 7.6E-11 60.8 9.8 38 154-198 137-174 (214)
412 cd01851 GBP Guanylate-binding 98.4 2.8E-06 6.1E-11 61.7 9.3 87 10-97 4-103 (224)
413 cd03229 ABC_Class3 This class 98.4 2.2E-06 4.7E-11 60.1 8.4 31 163-198 107-137 (178)
414 TIGR02314 ABC_MetN D-methionin 98.4 1.7E-06 3.8E-11 66.7 8.5 40 152-198 138-177 (343)
415 PRK13538 cytochrome c biogenes 98.4 4E-06 8.6E-11 60.1 10.0 38 153-197 128-165 (204)
416 COG1119 ModF ABC-type molybden 98.4 1.9E-07 4.2E-12 67.1 3.0 28 164-196 179-206 (257)
417 PRK10416 signal recognition pa 98.4 3E-06 6.6E-11 64.6 9.7 143 12-163 113-301 (318)
418 cd03219 ABC_Mj1267_LivG_branch 98.4 4E-06 8.6E-11 61.5 10.1 39 153-198 142-180 (236)
419 cd03266 ABC_NatA_sodium_export 98.4 2.5E-06 5.4E-11 61.8 8.9 32 161-197 141-172 (218)
420 PRK13631 cbiO cobalt transport 98.4 6.1E-07 1.3E-11 68.7 5.9 33 161-198 181-213 (320)
421 TIGR00092 GTP-binding protein 98.4 1.2E-06 2.5E-11 67.6 7.4 83 14-96 3-108 (368)
422 PRK11831 putative ABC transpor 98.4 4.3E-06 9.4E-11 62.6 10.4 39 153-198 142-180 (269)
423 cd03258 ABC_MetN_methionine_tr 98.4 3.5E-06 7.5E-11 61.7 9.7 32 162-198 146-177 (233)
424 PRK13543 cytochrome c biogenes 98.4 7.9E-06 1.7E-10 59.0 11.3 33 161-198 142-174 (214)
425 TIGR01189 ccmA heme ABC export 98.4 6.6E-06 1.4E-10 58.7 10.8 32 162-198 133-164 (198)
426 PRK10619 histidine/lysine/argi 98.4 6.2E-06 1.3E-10 61.3 11.0 33 161-198 157-189 (257)
427 cd03264 ABC_drug_resistance_li 98.4 2.6E-06 5.6E-11 61.4 8.7 39 153-198 129-167 (211)
428 cd03263 ABC_subfamily_A The AB 98.4 4.1E-06 8.8E-11 60.8 9.8 32 162-198 139-170 (220)
429 COG4608 AppF ABC-type oligopep 98.4 1.1E-06 2.3E-11 64.4 6.5 39 153-198 108-146 (268)
430 cd03233 ABC_PDR_domain1 The pl 98.4 2.8E-06 6.1E-11 60.8 8.7 32 162-198 124-155 (202)
431 PRK11153 metN DL-methionine tr 98.4 3.6E-06 7.8E-11 65.1 9.8 38 153-197 139-176 (343)
432 PRK13651 cobalt transporter AT 98.4 6.6E-07 1.4E-11 68.0 5.7 33 161-198 170-202 (305)
433 TIGR01288 nodI ATP-binding ABC 98.4 4.6E-06 9.9E-11 63.5 10.2 39 153-198 134-172 (303)
434 cd03237 ABC_RNaseL_inhibitor_d 98.4 1.8E-06 3.9E-11 63.7 7.6 38 153-197 114-151 (246)
435 cd03230 ABC_DR_subfamily_A Thi 98.4 3E-06 6.5E-11 59.1 8.4 31 163-198 102-132 (173)
436 TIGR02982 heterocyst_DevA ABC 98.4 4.1E-06 8.8E-11 60.8 9.4 33 161-198 146-178 (220)
437 cd03224 ABC_TM1139_LivF_branch 98.4 1.8E-06 3.8E-11 62.7 7.5 39 153-198 131-169 (222)
438 cd03268 ABC_BcrA_bacitracin_re 98.4 1.5E-06 3.3E-11 62.4 7.1 39 153-198 125-163 (208)
439 KOG0466 Translation initiation 98.4 3.2E-07 7E-12 67.9 3.5 111 63-174 126-243 (466)
440 PRK10895 lipopolysaccharide AB 98.4 4E-06 8.6E-11 61.7 9.2 39 153-198 136-174 (241)
441 PRK10908 cell division protein 98.4 5.6E-06 1.2E-10 60.1 9.9 33 161-198 142-174 (222)
442 KOG1487 GTP-binding protein DR 98.4 6.1E-06 1.3E-10 59.9 9.7 87 14-102 60-153 (358)
443 TIGR02769 nickel_nikE nickel i 98.4 6.5E-06 1.4E-10 61.5 10.5 32 161-197 155-186 (265)
444 cd03295 ABC_OpuCA_Osmoprotecti 98.4 5.3E-06 1.2E-10 61.1 9.9 31 162-197 141-171 (242)
445 COG1125 OpuBA ABC-type proline 98.4 5.5E-07 1.2E-11 65.2 4.4 37 152-195 133-169 (309)
446 PRK11650 ugpC glycerol-3-phosp 98.4 3.6E-06 7.9E-11 65.3 9.3 39 153-198 133-171 (356)
447 cd03225 ABC_cobalt_CbiO_domain 98.4 1.9E-06 4E-11 62.1 7.3 39 153-198 133-171 (211)
448 COG4555 NatA ABC-type Na+ tran 98.4 1.1E-06 2.3E-11 61.6 5.6 28 164-196 141-168 (245)
449 TIGR03410 urea_trans_UrtE urea 98.4 2.1E-06 4.6E-11 62.7 7.6 39 153-198 130-168 (230)
450 COG3840 ThiQ ABC-type thiamine 98.4 2.7E-06 5.8E-11 58.7 7.4 37 153-196 128-164 (231)
451 KOG4273 Uncharacterized conser 98.4 8.1E-06 1.7E-10 59.0 10.1 156 14-172 5-222 (418)
452 PRK13796 GTPase YqeH; Provisio 98.4 8.1E-07 1.8E-11 69.2 5.6 57 14-73 161-221 (365)
453 PRK11000 maltose/maltodextrin 98.4 5.7E-06 1.2E-10 64.6 10.3 38 153-197 132-169 (369)
454 PRK13637 cbiO cobalt transport 98.4 1.3E-06 2.8E-11 66.0 6.5 39 153-198 143-181 (287)
455 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.9E-06 6.3E-11 64.0 8.4 89 80-173 19-107 (287)
456 PRK11308 dppF dipeptide transp 98.4 3.5E-06 7.7E-11 64.7 9.0 38 154-198 154-191 (327)
457 PRK11629 lolD lipoprotein tran 98.3 6.6E-06 1.4E-10 60.2 10.0 33 161-198 150-182 (233)
458 PRK11124 artP arginine transpo 98.3 5.6E-06 1.2E-10 60.9 9.7 33 161-198 146-178 (242)
459 TIGR00972 3a0107s01c2 phosphat 98.3 8.8E-06 1.9E-10 60.1 10.6 31 162-197 150-180 (247)
460 PRK13646 cbiO cobalt transport 98.3 4.7E-06 1E-10 62.9 9.3 39 153-198 144-182 (286)
461 TIGR03258 PhnT 2-aminoethylpho 98.3 4.3E-06 9.2E-11 65.1 9.2 38 153-197 136-173 (362)
462 cd03246 ABCC_Protease_Secretio 98.3 1.7E-06 3.6E-11 60.4 6.4 32 162-198 102-133 (173)
463 PRK11300 livG leucine/isoleuci 98.3 4.6E-06 9.9E-11 61.9 9.1 38 153-197 152-189 (255)
464 TIGR03265 PhnT2 putative 2-ami 98.3 5.2E-06 1.1E-10 64.4 9.6 32 161-197 139-170 (353)
465 PRK11432 fbpC ferric transport 98.3 4E-06 8.8E-11 64.9 9.0 39 153-198 135-173 (351)
466 cd03235 ABC_Metallic_Cations A 98.3 2.1E-06 4.5E-11 62.0 7.0 38 153-197 131-168 (213)
467 cd03247 ABCC_cytochrome_bd The 98.3 2.4E-06 5.3E-11 59.9 7.2 39 152-197 96-134 (178)
468 cd03297 ABC_ModC_molybdenum_tr 98.3 8.1E-06 1.8E-10 59.0 10.0 39 153-198 130-168 (214)
469 cd03267 ABC_NatA_like Similar 98.3 1E-05 2.2E-10 59.3 10.7 39 153-198 152-190 (236)
470 cd03231 ABC_CcmA_heme_exporter 98.3 6.6E-07 1.4E-11 64.0 4.3 33 161-198 130-162 (201)
471 PRK13645 cbiO cobalt transport 98.3 2.4E-06 5.1E-11 64.6 7.5 39 153-198 149-187 (289)
472 TIGR00157 ribosome small subun 98.3 1.4E-06 3E-11 64.2 6.0 57 14-74 121-183 (245)
473 cd03232 ABC_PDR_domain2 The pl 98.3 1.1E-06 2.5E-11 62.3 5.4 38 154-198 108-145 (192)
474 TIGR03597 GTPase_YqeH ribosome 98.3 1.6E-06 3.5E-11 67.4 6.6 58 14-74 155-216 (360)
475 TIGR02211 LolD_lipo_ex lipopro 98.3 6.5E-06 1.4E-10 59.7 9.4 39 153-198 140-178 (221)
476 PRK13647 cbiO cobalt transport 98.3 1.6E-06 3.5E-11 65.0 6.3 38 154-198 138-175 (274)
477 cd03214 ABC_Iron-Siderophores_ 98.3 2.4E-06 5.3E-11 60.0 6.9 37 154-197 97-133 (180)
478 PRK10584 putative ABC transpor 98.3 8.6E-06 1.9E-10 59.4 10.0 39 153-198 145-183 (228)
479 cd03223 ABCD_peroxisomal_ALDP 98.3 3.5E-06 7.7E-11 58.4 7.6 33 161-198 96-128 (166)
480 PRK13641 cbiO cobalt transport 98.3 9.3E-06 2E-10 61.3 10.4 38 153-197 144-181 (287)
481 COG4586 ABC-type uncharacteriz 98.3 2.1E-06 4.5E-11 62.9 6.5 33 161-198 161-193 (325)
482 COG0410 LivF ABC-type branched 98.3 5.6E-06 1.2E-10 59.2 8.5 28 159-186 139-166 (237)
483 cd03294 ABC_Pro_Gly_Bertaine T 98.3 1.1E-05 2.5E-10 60.3 10.7 37 154-197 160-196 (269)
484 TIGR02868 CydC thiol reductant 98.3 4E-06 8.7E-11 68.7 9.0 32 161-197 475-506 (529)
485 TIGR01277 thiQ thiamine ABC tr 98.3 1.6E-05 3.5E-10 57.3 11.2 38 154-198 128-165 (213)
486 cd03257 ABC_NikE_OppD_transpor 98.3 3E-06 6.6E-11 61.7 7.5 38 153-197 144-181 (228)
487 PRK09473 oppD oligopeptide tra 98.3 3.8E-06 8.1E-11 64.6 8.3 39 153-198 160-198 (330)
488 PRK14241 phosphate transporter 98.3 1.4E-05 2.9E-10 59.5 11.0 31 162-197 154-184 (258)
489 TIGR02142 modC_ABC molybdenum 98.3 1.2E-05 2.7E-10 62.5 11.1 39 153-198 130-168 (354)
490 PRK11607 potG putrescine trans 98.3 7.3E-06 1.6E-10 64.1 9.9 32 161-197 154-185 (377)
491 PRK10771 thiQ thiamine transpo 98.3 5.9E-06 1.3E-10 60.5 8.9 38 153-197 128-165 (232)
492 TIGR03740 galliderm_ABC gallid 98.3 1.6E-05 3.4E-10 57.8 11.1 38 154-198 124-161 (223)
493 cd03296 ABC_CysA_sulfate_impor 98.3 1.2E-05 2.5E-10 59.2 10.5 39 153-198 135-173 (239)
494 COG4559 ABC-type hemin transpo 98.3 1.6E-06 3.6E-11 61.2 5.5 33 161-198 140-178 (259)
495 TIGR03411 urea_trans_UrtD urea 98.3 1.9E-06 4.1E-11 63.5 6.2 33 161-198 148-180 (242)
496 PRK11248 tauB taurine transpor 98.3 1.1E-05 2.4E-10 59.9 10.3 39 153-198 127-165 (255)
497 PRK14974 cell division protein 98.3 1.4E-06 3E-11 66.7 5.7 95 61-164 222-322 (336)
498 PRK13634 cbiO cobalt transport 98.3 1.2E-05 2.5E-10 60.9 10.6 39 153-198 144-182 (290)
499 PRK13643 cbiO cobalt transport 98.3 1E-05 2.2E-10 61.1 10.3 32 161-197 149-180 (288)
500 TIGR01186 proV glycine betaine 98.3 5.5E-06 1.2E-10 64.4 8.9 37 154-197 129-165 (363)
No 1
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8e-39 Score=231.18 Aligned_cols=193 Identities=100% Similarity=1.608 Sum_probs=171.4
Q ss_pred CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
|.++++++.++..+||+++|+.|||||||+++++.+.+...+.+|.|.++....+..++..+.+.+||++|++.+...+.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 77889999999999999999999999999999999999889999999988888777777789999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.+++.++++|+|||++++.+|+.+..|+..+....++.|+++||||.|+.++....+...+++..++.|+++||++|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 99999999999999999999999999999998887889999999999997665555555777888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d 193 (199)
+++|.+|++.+.+..+...++.|...++....|
T Consensus 161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
T PLN03071 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193 (219)
T ss_pred HHHHHHHHHHHHcCcchhcccccccCCcccCCC
Confidence 999999999998887777777776655443333
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-39 Score=217.88 Aligned_cols=173 Identities=33% Similarity=0.572 Sum_probs=159.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|+|||+|+.||..+.|...+..|.|+++......++++.+.+++|||+|+++|+.....|+++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCc-EEEeccCCCCChHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~ 166 (199)
+|||+++.+||..+..|+.++.++. .++|.++||||+|+.+. .+.. +...++..++++ ++++||+++.++++.|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999999987 56799999999999874 3443 445899999999 999999999999999999
Q ss_pred HHHHHhCCCCCceecCC
Q 029077 167 LARKLAGDPNLHFVESP 183 (199)
Q Consensus 167 i~~~~~~~~~~~~~~~p 183 (199)
|+..+......+...++
T Consensus 167 la~~lk~~~~~~~~~~~ 183 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWST 183 (205)
T ss_pred HHHHHHHhcccCCCCCc
Confidence 99999877777666664
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-38 Score=211.46 Aligned_cols=165 Identities=33% Similarity=0.595 Sum_probs=151.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|+.++|||||+-||..+.|.....+|.|..+....+.+++..++|.+|||+|+++|+++..+|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 56799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||+++.+||..++.|+.++.+.. +++-+.+||||+|+.+ +.+ .++...++...++.|+++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 9999999999999999999999876 4566678999999987 444 445668999999999999999999999999999
Q ss_pred HHHHhCCC
Q 029077 168 ARKLAGDP 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
++.+....
T Consensus 163 a~~lp~~~ 170 (200)
T KOG0092|consen 163 AEKLPCSD 170 (200)
T ss_pred HHhccCcc
Confidence 99997654
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-37 Score=210.06 Aligned_cols=170 Identities=31% Similarity=0.546 Sum_probs=153.8
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
.....+.+|++++|+.++|||||+.||+...+...|.+|+|+++-...+.+.+..+.+++|||+|+++|+++...|++++
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds 95 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 95 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+++|+|||+++..||+...+|+..+..... ++-+++||||.||.+ ++...+ ....+++++..|+++||+.|.||++
T Consensus 96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 999999999999999999999999988763 466779999999987 444443 3478899999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 029077 163 PFLYLARKLAGDPN 176 (199)
Q Consensus 163 ~~~~i~~~~~~~~~ 176 (199)
+|.-|+.++.+...
T Consensus 176 lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 176 LFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHhccCccc
Confidence 99999988876554
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=202.06 Aligned_cols=170 Identities=31% Similarity=0.528 Sum_probs=156.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
.-..+||++||++|+|||||+.+|..+.+.+....|+|+++....+.+++..+++.+|||+|+++|+.+...|++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 35679999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|+|||++.+++|..+..|..++..++ +++-.++||||+|.++ +.+. .+.+.+++.+.+-++++||++..|++..|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 99999999999999999999999887 4566679999999884 4444 355799999999999999999999999999
Q ss_pred HHHHHHhCCCCCce
Q 029077 166 YLARKLAGDPNLHF 179 (199)
Q Consensus 166 ~i~~~~~~~~~~~~ 179 (199)
.++..+.+.|.+.-
T Consensus 168 elveKIi~tp~l~~ 181 (209)
T KOG0080|consen 168 ELVEKIIETPSLWE 181 (209)
T ss_pred HHHHHHhcCcchhh
Confidence 99999999887744
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.3e-36 Score=213.20 Aligned_cols=165 Identities=23% Similarity=0.502 Sum_probs=148.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999888888888888888877777888888999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|||++++.+|+.+..|+..+....++.|+++||||.|+.+ +.+.. +...+++..++.+++|||++|.|++++|.+|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999999988778999999999999975 33333 456888889999999999999999999999999
Q ss_pred HHhCCCC
Q 029077 170 KLAGDPN 176 (199)
Q Consensus 170 ~~~~~~~ 176 (199)
.+.....
T Consensus 165 ~i~~~~~ 171 (189)
T cd04121 165 IVLMRHG 171 (189)
T ss_pred HHHHhcC
Confidence 8886655
No 7
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.8e-35 Score=213.66 Aligned_cols=190 Identities=79% Similarity=1.326 Sum_probs=169.0
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
..+...+||+++|++|||||||+++++.+.+...+.+|.+.++....+..+++.+.+.+||++|++.+...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45677899999999999999999988889898889999999888888877888999999999999998888888899999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
++++|||+++..++..+..|+..+.....+.|+++++||.|+.++....+...++...++.++++|+++|.|++++|.+|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999887778899999999999977655556667777888999999999999999999999
Q ss_pred HHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 168 ~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++++..+|.++++|||+..+.+..+|....
T Consensus 164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 164 ARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred HHHHhhcccceecCCcccCCCccccCHHHH
Confidence 999999999999999994444444887654
No 8
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=206.81 Aligned_cols=167 Identities=31% Similarity=0.582 Sum_probs=154.7
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
.-...+||+++|++|||||+|+.+|..+.+...+..|.|+++....+..++..+.+++|||+|+++++.....|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|||+++..||+++..|+..+.+..+ .+|.++||||+|+.+ +.+.. ....++.++|+.++|+||++|.||.+.|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 9999999999999999999999999874 899999999999987 34444 44689999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 029077 166 YLARKLAGDP 175 (199)
Q Consensus 166 ~i~~~~~~~~ 175 (199)
.|++.+....
T Consensus 168 ~La~~i~~k~ 177 (207)
T KOG0078|consen 168 SLARDILQKL 177 (207)
T ss_pred HHHHHHHhhc
Confidence 9999988533
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.6e-35 Score=206.85 Aligned_cols=158 Identities=28% Similarity=0.489 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|..|+|||||+.+|..+.+...+.+|.+..+ ...+..++..+.+.+|||+|+++++..+..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999888999998665 445667888899999999999999999999999999999999
Q ss_pred eCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-----------c-cHHHHHHHHHcCC-cEEEeccCCCCC
Q 029077 94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNYN 159 (199)
Q Consensus 94 d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~~ 159 (199)
|++++++|+.+ ..|+..+....++.|+++||||.|+.+.. + ..+...+++..+. .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 68999998777889999999999996532 2 3345678888887 599999999999
Q ss_pred hHHHHHHHHHHHh
Q 029077 160 FEKPFLYLARKLA 172 (199)
Q Consensus 160 v~~~~~~i~~~~~ 172 (199)
++++|..+++.+.
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
No 10
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.6e-35 Score=203.96 Aligned_cols=165 Identities=87% Similarity=1.425 Sum_probs=148.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888899998888877777778899999999999998888888999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|+++++++..+..|+..+.....+.|+++|+||.|+.++....+...+++..++.++++||++|.|++++|++|++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999988877899999999999986655555566777788899999999999999999999999988
Q ss_pred CCCCc
Q 029077 174 DPNLH 178 (199)
Q Consensus 174 ~~~~~ 178 (199)
.+++.
T Consensus 161 ~~~~~ 165 (166)
T cd00877 161 NPNLE 165 (166)
T ss_pred ccccc
Confidence 77654
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-36 Score=202.25 Aligned_cols=174 Identities=30% Similarity=0.507 Sum_probs=157.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+|++++|+.|+|||+|+.+|....|.+.+..|.|+++-...+.++++.+++++|||+|++.|++....|++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++.+++|..+..|+..+.+.. ++..++++|||.|+..+ .+.. |...|++++++.++++||+++.|++|+|..+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999985 89999999999999864 3333 4568999999999999999999999999999
Q ss_pred HHHHhCCCCCceecCCC
Q 029077 168 ARKLAGDPNLHFVESPA 184 (199)
Q Consensus 168 ~~~~~~~~~~~~~~~p~ 184 (199)
++.++...+.-..++-.
T Consensus 164 a~~Iy~~~q~g~~~~~~ 180 (216)
T KOG0098|consen 164 AKEIYRKIQDGVFDDIN 180 (216)
T ss_pred HHHHHHHHHhccccccc
Confidence 99988655554444433
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.1e-35 Score=209.29 Aligned_cols=161 Identities=29% Similarity=0.601 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+.|+++|..|||||||+++|..+.+...+.+|.|.++....+.+++..+.+.+||++|+++++..+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999998888999998888878888888899999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHc-CCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|++++++|+.+..|+..+.... .+.|+++||||.|+.+ +.+.. +...+++.. ++.++++||++|.|++++|.++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887664 5799999999999964 33433 344677664 788999999999999999999999
Q ss_pred HHhCC
Q 029077 170 KLAGD 174 (199)
Q Consensus 170 ~~~~~ 174 (199)
.+...
T Consensus 161 ~~~~~ 165 (202)
T cd04120 161 DILKK 165 (202)
T ss_pred HHHHh
Confidence 88654
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=200.16 Aligned_cols=166 Identities=31% Similarity=0.635 Sum_probs=151.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|+|||||+++|....|...+..|+|.++-...+.++++.+.+++|||+|+++|.++...+++.+|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCC---ccccH-HHHHHHHHcC-CcEEEeccCCCCCh
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKKN-LQYYEISAKSNYNF 160 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~---~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~v 160 (199)
+|||++++.||+.+..|..++..+. ...|+|++|||+|+.+ +++.. ...++|+..+ ++|||+||+...||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 9999999999999999999998765 2589999999999976 55555 4568888765 89999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 029077 161 EKPFLYLARKLAGDPN 176 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~ 176 (199)
.+.|..+++...++..
T Consensus 167 ~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 167 DEAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876664
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.9e-35 Score=206.00 Aligned_cols=161 Identities=24% Similarity=0.410 Sum_probs=142.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|+.|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35689999999999999999999999998889999986553 55677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEecc
Q 029077 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA 154 (199)
Q Consensus 91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~ 154 (199)
+|||++++.+|+.+ ..|+..+....++.|+++||||.|+.+ +.+ ..+..++++..++ .|++|||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 799999988888999999999999864 123 3456688999995 8999999
Q ss_pred CCCCC-hHHHHHHHHHHHh
Q 029077 155 KSNYN-FEKPFLYLARKLA 172 (199)
Q Consensus 155 ~~~~~-v~~~~~~i~~~~~ 172 (199)
++|.| ++++|..+++++.
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999998654
No 15
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=6e-35 Score=207.51 Aligned_cols=167 Identities=86% Similarity=1.406 Sum_probs=149.4
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 029077 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (199)
Q Consensus 19 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (199)
+|..|||||||+++|+.+.+...+.+|.|.++....+..++..+.+.+||++|++++...+..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888888899999999888888888899999999999999999999999999999999999999
Q ss_pred hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCCCc
Q 029077 99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 178 (199)
Q Consensus 99 ~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~ 178 (199)
.+|..+..|+..+.+..++.|+++||||.|+.++.+..+...+++..++.|++|||++|.|++++|.+|++.+.+..++.
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~ 160 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 160 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence 99999999999998877899999999999997766555666788888999999999999999999999999998776654
Q ss_pred eecCCCC
Q 029077 179 FVESPAL 185 (199)
Q Consensus 179 ~~~~p~~ 185 (199)
+...|..
T Consensus 161 ~~~~~~~ 167 (200)
T smart00176 161 FVAMPAL 167 (200)
T ss_pred eccCccc
Confidence 4444433
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.3e-35 Score=203.69 Aligned_cols=159 Identities=23% Similarity=0.399 Sum_probs=139.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
++||+++|+.|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 579999999999999999999999998889999876653 4667788889999999999999999999999999999999
Q ss_pred EeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEeccCC
Q 029077 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISAKS 156 (199)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
||++++++|+.+ ..|+..+....++.|+++||||.|+.+ +.+ ..+..++++..++ .|++|||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 789999988888999999999999854 112 3456688999997 799999999
Q ss_pred CCC-hHHHHHHHHHHHh
Q 029077 157 NYN-FEKPFLYLARKLA 172 (199)
Q Consensus 157 ~~~-v~~~~~~i~~~~~ 172 (199)
|.+ ++++|..++++..
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 985 9999999998654
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.1e-34 Score=205.71 Aligned_cols=162 Identities=31% Similarity=0.536 Sum_probs=140.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
|..+||+++|+.|||||||+++|..+.+...+.+|.+..+. ....+++..+.+.+||++|+++++..+..+++++|++|
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 35699999999999999999999999998889999985543 34566788899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcC-CcEEEecc
Q 029077 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISA 154 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~ 154 (199)
+|||++++.+|+.+. .|+..+....++.|+++||||.|+.+.. + ..+...+++..+ ..++++||
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999996 6988887766789999999999996531 1 224456788887 58999999
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 029077 155 KSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~ 173 (199)
++|.|++++|.++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998865
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=192.15 Aligned_cols=160 Identities=33% Similarity=0.600 Sum_probs=150.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
-++.+|+|++|+|||+|+.+|....|...|..|.|+++....+.+++..+++.+||++|+++|+.....+++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
||+++.+||.+..+|+.++...++.+|-++||||.|..++... .+...++...++.+|++|+++..|++.+|..|.+.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999986554 45678999999999999999999999999999987
Q ss_pred Hh
Q 029077 171 LA 172 (199)
Q Consensus 171 ~~ 172 (199)
+.
T Consensus 168 vl 169 (198)
T KOG0079|consen 168 VL 169 (198)
T ss_pred HH
Confidence 65
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.1e-34 Score=205.25 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=143.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|+.|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+......++++++++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45789999999999999999999999999999999986654 45677888899999999999999998999999999999
Q ss_pred EEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEecc
Q 029077 91 IMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA 154 (199)
Q Consensus 91 ~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~ 154 (199)
+|||++++.+|+. +..|+..+....++.|+++||||.|+.+ +.+ ..+..++++..++ .|++|||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999998 4799999988778899999999999864 223 3356789999998 6999999
Q ss_pred CCCC-ChHHHHHHHHHHHhCC
Q 029077 155 KSNY-NFEKPFLYLARKLAGD 174 (199)
Q Consensus 155 ~~~~-~v~~~~~~i~~~~~~~ 174 (199)
++|. |++++|..+++.+.++
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9997 8999999999988643
No 20
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.6e-34 Score=199.31 Aligned_cols=159 Identities=24% Similarity=0.403 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|..|||||||+++|..+.+...+.+|.|.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999998887777888888899999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-------cccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.+|..+..|+..+....+ ..| ++||||.|+... ....+...+++..+.+++++||++|.|++++|.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998877654 455 678999998521 122334567888889999999999999999999
Q ss_pred HHHHHHhC
Q 029077 166 YLARKLAG 173 (199)
Q Consensus 166 ~i~~~~~~ 173 (199)
++++.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99998865
No 21
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-33 Score=201.63 Aligned_cols=163 Identities=34% Similarity=0.594 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|++|||||||+++|+.+.+...+.+|.+.++....+..+ +..+.+.+||++|++.++..+..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888889999988777777776 7789999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCC-c-cccHHHHHHHHHcC-CcEEEeccCCCCChHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~-~-~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~ 164 (199)
||++++.+|+.+..|+..+.... .++|+++|+||.|+.+ + ....+..++++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998886542 5789999999999973 3 33344567888888 689999999999999999
Q ss_pred HHHHHHHhCCCC
Q 029077 165 LYLARKLAGDPN 176 (199)
Q Consensus 165 ~~i~~~~~~~~~ 176 (199)
.+|++.+....+
T Consensus 161 ~~l~~~l~~~~~ 172 (201)
T cd04107 161 RFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHhch
Confidence 999998876543
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.3e-33 Score=196.36 Aligned_cols=161 Identities=34% Similarity=0.559 Sum_probs=142.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++++++++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888888888888777777788889999999999999999889999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||++++++|+.+..|+..+.... ++.|+++|+||.|+.+.. .. .+...+++..+++++++||++|.|+.++|..+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999886654 578999999999997643 33 4556788888899999999999999999999998
Q ss_pred HHhC
Q 029077 170 KLAG 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8754
No 23
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.7e-33 Score=193.71 Aligned_cols=157 Identities=28% Similarity=0.547 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888899998887777777877899999999999999988899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|++++++|+.+..|+..+..... +.|+++|+||.|+.+.. . ..+...+++..+.+++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877653 68999999999996533 3 345567788888999999999999999999999875
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.9e-33 Score=196.39 Aligned_cols=161 Identities=30% Similarity=0.491 Sum_probs=139.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++.++..+..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888887444 34566677889999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
||++++.+|..+..|...+.+.. +++|+++|+||.|+.+. .... +...+++..++++++|||++|.|++++|.+|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988877643 57999999999998653 3333 45578888899999999999999999999999
Q ss_pred HHHhCC
Q 029077 169 RKLAGD 174 (199)
Q Consensus 169 ~~~~~~ 174 (199)
+.+...
T Consensus 161 ~~~~~~ 166 (172)
T cd04141 161 REIRRK 166 (172)
T ss_pred HHHHHh
Confidence 988753
No 25
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=5e-33 Score=192.38 Aligned_cols=160 Identities=31% Similarity=0.518 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|.+|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998888877778777776666777778899999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|++++.+++.+..|+..+....++.|+++|+||.|+... ...+...++...+++++++||++|.|++++|+.+++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999877778999999999998543 2233446666778899999999999999999999987765
Q ss_pred C
Q 029077 174 D 174 (199)
Q Consensus 174 ~ 174 (199)
.
T Consensus 160 ~ 160 (161)
T cd04124 160 Y 160 (161)
T ss_pred c
Confidence 3
No 26
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4e-33 Score=195.20 Aligned_cols=158 Identities=25% Similarity=0.435 Sum_probs=134.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|..|||||||+++|..+.+...+.||.+..+. .....++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888899886554 3456677789999999999999988888899999999999
Q ss_pred EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEeccCC
Q 029077 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEISAKS 156 (199)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s~~~ 156 (199)
||++++++|+.+. .|+..+....++.|+++|+||.|+.+. .+. .+...+++..+ ..|+++||++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 9999999999987 599888777778999999999998542 122 23345666666 6899999999
Q ss_pred CCChHHHHHHHHHHH
Q 029077 157 NYNFEKPFLYLARKL 171 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~ 171 (199)
|.|++++|+.++++.
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998854
No 27
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-34 Score=184.63 Aligned_cols=161 Identities=27% Similarity=0.558 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+|++++|...+|||||+.++...++...+.+|.|++++...+....+.+.+++|||+|+++++.....++++++++|++|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 49999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-ccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++.+||..+..|...+..++ .+.|+|+|+||+|+.++. +..+ ...++..+|+.|||+|++.+.|++++|..+...
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDI 181 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHH
Confidence 9999999999999999999887 789999999999998754 4444 468999999999999999999999999999888
Q ss_pred HhCC
Q 029077 171 LAGD 174 (199)
Q Consensus 171 ~~~~ 174 (199)
+..+
T Consensus 182 Ic~k 185 (193)
T KOG0093|consen 182 ICDK 185 (193)
T ss_pred HHHH
Confidence 7654
No 28
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.2e-33 Score=200.57 Aligned_cols=162 Identities=23% Similarity=0.421 Sum_probs=139.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
++||+|+|+.|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 479999999999999999999999998889999886554 4667788889999999999999999999999999999999
Q ss_pred EeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc--------------cccHHHHHHHHHcCC-cEEEeccCC
Q 029077 93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS 156 (199)
Q Consensus 93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
||++++++|+.+ ..|...+....++.|+++||||.|+.+. ....+...+++..++ .|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999998 4688888777789999999999999642 112345678888885 899999999
Q ss_pred CCC-hHHHHHHHHHHHhCCC
Q 029077 157 NYN-FEKPFLYLARKLAGDP 175 (199)
Q Consensus 157 ~~~-v~~~~~~i~~~~~~~~ 175 (199)
+.+ ++++|..++++.....
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 884 9999999999876543
No 29
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=6e-33 Score=198.17 Aligned_cols=166 Identities=31% Similarity=0.545 Sum_probs=146.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|++|||||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999888888888899888877777777778899999999999999899999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-c-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|||++++++|..+..|+..+....+..|+++|+||.|+.+... . .+...+++..+..++++|+++|.|++++|.+|.+
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 9999999999999999999988778899999999999976432 3 3445677788899999999999999999999999
Q ss_pred HHhCCCCC
Q 029077 170 KLAGDPNL 177 (199)
Q Consensus 170 ~~~~~~~~ 177 (199)
.+......
T Consensus 165 ~~~~~~~~ 172 (199)
T cd04110 165 LVLRAKKD 172 (199)
T ss_pred HHHHhhhc
Confidence 88765443
No 30
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=7.2e-33 Score=192.34 Aligned_cols=160 Identities=28% Similarity=0.579 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+...+.++.|.++.......++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999888888889887777666666777899999999999999888899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++.++++.+..|+..+.... .+.|+++|+||.|+.+.. . ..+...++...+++++++||++|.|+.++|+++++.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999987765 478999999999997543 2 234456777888899999999999999999999987
Q ss_pred HhC
Q 029077 171 LAG 173 (199)
Q Consensus 171 ~~~ 173 (199)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 653
No 31
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=5.4e-33 Score=192.37 Aligned_cols=158 Identities=36% Similarity=0.701 Sum_probs=146.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|+.|||||||+++|..+.+...+.+|.|.+........++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
++++++|..+..|+..+....+ +.|++++|||.|+.+ +.+.. +...+++.++.+|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999887 699999999999986 44444 45689999999999999999999999999999887
Q ss_pred h
Q 029077 172 A 172 (199)
Q Consensus 172 ~ 172 (199)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 4
No 32
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.1e-33 Score=193.44 Aligned_cols=157 Identities=27% Similarity=0.493 Sum_probs=134.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999999999998888888763 3344556777889999999999999999989999999999999
Q ss_pred EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcC-CcEEEeccCC
Q 029077 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKS 156 (199)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~~~ 156 (199)
||++++++|+.+. .|+..+....++.|+++|+||.|+.+.. + ..+...+++..+ +.+++|||++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999999986 6888887777789999999999996421 2 234457787787 4899999999
Q ss_pred CCChHHHHHHHHHH
Q 029077 157 NYNFEKPFLYLARK 170 (199)
Q Consensus 157 ~~~v~~~~~~i~~~ 170 (199)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999999874
No 33
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.2e-32 Score=191.39 Aligned_cols=160 Identities=33% Similarity=0.617 Sum_probs=141.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998888888888888887777777787889999999999999988889999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||+++++++..+..|+..+.... ++.|+++|+||.|+.+.. .. .+...+++..+++++++||++|.|+.++|..|++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999987765 578999999999986532 32 4456777888899999999999999999999998
Q ss_pred HHh
Q 029077 170 KLA 172 (199)
Q Consensus 170 ~~~ 172 (199)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 875
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.2e-32 Score=191.67 Aligned_cols=161 Identities=30% Similarity=0.584 Sum_probs=142.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999999888899998887777777788889999999999999888888899999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||++++.+|..+..|+..+.... .+.|+++|+||.|+.+. ... .+...++...+.+++++||++|.|+.++|.++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999888764 57899999999999753 233 3445677788899999999999999999999999
Q ss_pred HHhC
Q 029077 170 KLAG 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+..
T Consensus 163 ~~~~ 166 (167)
T cd01867 163 DIKK 166 (167)
T ss_pred HHHh
Confidence 8764
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=9.4e-33 Score=194.36 Aligned_cols=162 Identities=31% Similarity=0.551 Sum_probs=140.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec----------CcEEEEEEEeCCCcccccccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG 81 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~ 81 (199)
..+||+++|++|||||||++++..+.+...+.++.+.++......+. +..+.+.+||++|++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988889999887766655543 45689999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
+++++|++++|||++++++|..+..|+..+.... ++.|+++|+||.|+.+. ... .+...+++..+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999887653 57899999999999753 333 3456788888999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 029077 158 YNFEKPFLYLARKLAG 173 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~ 173 (199)
.|++++|++|++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987764
No 36
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-34 Score=184.72 Aligned_cols=175 Identities=28% Similarity=0.535 Sum_probs=156.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
-+|++++|+.|+|||+|+.+|+.+.|......|.|+++....+.+.++.+++++|||+|+++|++..+.|++.+.+.++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||++++++|..+..|+...+... +++-++++|||.|+.+. ++.. +...++++..+.+.++|+++|+|++|.|-..++
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 99999999999999999998875 57888899999999863 4443 456899999999999999999999999999999
Q ss_pred HHhCCCCCceecCCCCCC
Q 029077 170 KLAGDPNLHFVESPALAP 187 (199)
Q Consensus 170 ~~~~~~~~~~~~~p~~~~ 187 (199)
.+...-+.--+|.....+
T Consensus 169 tIl~kIE~GElDPer~gs 186 (214)
T KOG0086|consen 169 TILNKIESGELDPERMGS 186 (214)
T ss_pred HHHHHHhhcCCCHHHccc
Confidence 888766655555444443
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.2e-32 Score=191.43 Aligned_cols=159 Identities=27% Similarity=0.546 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988889999998887777888888899999999999998888889999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc------CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~------~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++.++..+..|+..+.... .+.|+++|+||.|+.+ .... .+...+++..+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999987764 3689999999999974 3333 334467777889999999999999999999
Q ss_pred HHHHHHh
Q 029077 166 YLARKLA 172 (199)
Q Consensus 166 ~i~~~~~ 172 (199)
+|++.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998875
No 38
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.9e-32 Score=190.90 Aligned_cols=159 Identities=28% Similarity=0.466 Sum_probs=138.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|.+|||||||+++|+.+.+...+.+|.+.++.......++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999988877777788888999999999999999999999999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccc----cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+++++++..+..|+..+.+.. .+.|+++|+||.|+.+... ..+...++...+.+++++||++|.|++++|..|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999876543 3477899999999864321 2233466777788999999999999999999999
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88754
No 39
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-33 Score=189.91 Aligned_cols=163 Identities=33% Similarity=0.544 Sum_probs=151.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
..-+||+++|++|+|||-|+.||..+.|..+..+|.|+++......++++.++.++|||+|+++|+.....|++.+-+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++.+.+|+.+..|+.+++... +++++++||||.|+.+ +.+ .++...++...+..++++||+.+.|+++.|..+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 9999999999999999999999987 7899999999999987 333 345568999999999999999999999999988
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
+..+..
T Consensus 172 l~~I~~ 177 (222)
T KOG0087|consen 172 LTEIYK 177 (222)
T ss_pred HHHHHH
Confidence 887753
No 40
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.6e-32 Score=188.88 Aligned_cols=157 Identities=31% Similarity=0.674 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec--CcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+||+++|.+|+|||||++++..+.+...+.++.+.++......+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999888888888898888766666665 678999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|||+++++++..+..|+..+.....+.|+++|+||.|+... ... .+...+++..+++++++|+++|.|++++|.+|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877789999999999998653 333 3445778888999999999999999999999876
Q ss_pred H
Q 029077 170 K 170 (199)
Q Consensus 170 ~ 170 (199)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.1e-32 Score=192.41 Aligned_cols=159 Identities=31% Similarity=0.500 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
.||+++|++|||||||+++|..+.+...+.+|.+..+. .....++..+.+.+||++|++.+...+..++..++++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999888888888875543 34455677799999999999999888888999999999999
Q ss_pred eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHHHHHcC-CcEEEeccCCC
Q 029077 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN 157 (199)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~~ 157 (199)
|++++.+|+.+. .|+..+....++.|+++|+||.|+.+... ..+...+++..+ +.|+++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999886 59998888778899999999999965321 122345666665 68999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 029077 158 YNFEKPFLYLARKLAG 173 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~ 173 (199)
.|++++|.++++.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998874
No 42
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.4e-32 Score=188.45 Aligned_cols=160 Identities=32% Similarity=0.618 Sum_probs=139.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+..+||+++|++|||||||+++|..+.+...+.++.|.+.....+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46799999999999999999999998888888888888877777778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHHHcC-CcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~v~~~ 163 (199)
+|||++++.+++.+..|...+.... .+.|+++|+||.|+..+.... +..++++..+ .+++++||++|.|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999998876643 368999999999997654443 4457777777 47999999999999999
Q ss_pred HHHHHHH
Q 029077 164 FLYLARK 170 (199)
Q Consensus 164 ~~~i~~~ 170 (199)
|..+++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 43
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.4e-32 Score=191.38 Aligned_cols=164 Identities=32% Similarity=0.574 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+...+.++.|.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999998888778889988877777777777899999999999998888999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|++++.+|..+..|+..+.... .+.|+++|+||.|+.+. ... .+...++...+++++++||++|.|++++|.++++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999988765 46899999999999753 333 33446777778899999999999999999999999
Q ss_pred HhCCCCC
Q 029077 171 LAGDPNL 177 (199)
Q Consensus 171 ~~~~~~~ 177 (199)
+......
T Consensus 161 ~~~~~~~ 167 (188)
T cd04125 161 IIKRLEE 167 (188)
T ss_pred HHHHhhc
Confidence 8764433
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=191.83 Aligned_cols=164 Identities=27% Similarity=0.523 Sum_probs=139.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
++..+||+++|++|||||||++++..+.+...+.+|.+.++ .....+++..+.+.+||++|++.+..++..+++.++++
T Consensus 2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 35679999999999999999999998888777888877554 44556677888999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++++|+.+..|+..+.... ++.|+++|+||.|+.+. ... .+...+++..+.+++++||++|.|++++|.
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 99999999999999999999887654 47899999999998653 223 234566777788999999999999999999
Q ss_pred HHHHHHhCC
Q 029077 166 YLARKLAGD 174 (199)
Q Consensus 166 ~i~~~~~~~ 174 (199)
+|++.+...
T Consensus 161 ~l~~~l~~~ 169 (189)
T PTZ00369 161 ELVREIRKY 169 (189)
T ss_pred HHHHHHHHH
Confidence 999887643
No 45
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.2e-32 Score=195.08 Aligned_cols=161 Identities=30% Similarity=0.510 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|++|||||||+++|..+.+...+.+|.+.+.......+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999998888888999999888777777754 578999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
||++++++|..+..|+..+.... .+.|+++|+||.|+.+ +.... +...+++..+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988764 2467999999999974 33333 345778888899999999999999999999
Q ss_pred HHHHHhCC
Q 029077 167 LARKLAGD 174 (199)
Q Consensus 167 i~~~~~~~ 174 (199)
|++.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988753
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=5.1e-32 Score=187.59 Aligned_cols=157 Identities=31% Similarity=0.573 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.+|.+ +........++..+.+.+||++|++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999998888777777776 334445566777889999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|+++..+++.+..|...+.... .+.|+++|+||.|+.+. .... +...+++..+.+++++||++|.|+.++|.++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887653 57999999999999653 3333 334567777889999999999999999999987
Q ss_pred HH
Q 029077 170 KL 171 (199)
Q Consensus 170 ~~ 171 (199)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.2e-32 Score=187.00 Aligned_cols=159 Identities=33% Similarity=0.594 Sum_probs=139.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998888888888998888888888888788999999999999888888899999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||+++..++..+..|+..+..... +.|+++|+||.|+.+. ... .+...++...++.++++||++|.|++++|+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999887764 5899999999999753 222 3445677777889999999999999999999987
Q ss_pred HH
Q 029077 170 KL 171 (199)
Q Consensus 170 ~~ 171 (199)
.+
T Consensus 163 ~i 164 (165)
T cd01868 163 EI 164 (165)
T ss_pred Hh
Confidence 65
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=7.5e-32 Score=187.05 Aligned_cols=159 Identities=30% Similarity=0.546 Sum_probs=135.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|.+|||||||++++..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998888777778877544 34566677789999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-ccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
||+++..+|+.+..|...+.... .+.|+++|+||.|+.+.. ... +...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887643 679999999999997643 232 23467777889999999999999999999999
Q ss_pred HHHh
Q 029077 169 RKLA 172 (199)
Q Consensus 169 ~~~~ 172 (199)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 49
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-33 Score=180.94 Aligned_cols=163 Identities=34% Similarity=0.615 Sum_probs=146.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
-+||+++|..|+|||+|+++|..+.|++....|.|+++--..+.+++..+++++|||+|+++|++..+.|++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccHHH-HHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||++...+|+.+.+|+.++.++. .++--|+||||.|+.++ ++++.. .+++.....-|.++||++..|++.+|..++-
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999986 45566899999999885 444443 4677777777899999999999999999987
Q ss_pred HHhCCC
Q 029077 170 KLAGDP 175 (199)
Q Consensus 170 ~~~~~~ 175 (199)
.+....
T Consensus 167 rli~~a 172 (213)
T KOG0095|consen 167 RLISEA 172 (213)
T ss_pred HHHHHH
Confidence 775443
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=8.5e-32 Score=186.20 Aligned_cols=158 Identities=33% Similarity=0.621 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888888777788888899999999999998888889999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++++++..+..|+..+.... ++.|+++|+||.|+.+. .. ..+...+++..++.++++|+++|.|+.++|.++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999886654 68999999999999753 33 334457788888999999999999999999999875
Q ss_pred H
Q 029077 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 3
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.4e-31 Score=186.32 Aligned_cols=161 Identities=32% Similarity=0.571 Sum_probs=141.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.|.+........++....+.+||++|++.+......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999998888888888888888777777787788999999999999888888899999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||++++.++..+..|+..+.... ++.|+++|+||.|+.+ .... .+...++...++.++++|+++|.|+.++|.++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999887754 6899999999999974 3333 3345677788899999999999999999999998
Q ss_pred HHhC
Q 029077 170 KLAG 173 (199)
Q Consensus 170 ~~~~ 173 (199)
.+.+
T Consensus 164 ~~~~ 167 (168)
T cd01866 164 EIYE 167 (168)
T ss_pred HHHh
Confidence 8754
No 52
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.3e-31 Score=185.27 Aligned_cols=158 Identities=30% Similarity=0.565 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999998888777778776443 44456677778899999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||+++..++..+..|...+.+.. .+.|+++|+||.|+.++.... +...+++..+.+++++||++|.|++++|.++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988887664 478999999999997654433 345677778889999999999999999999987
Q ss_pred HH
Q 029077 170 KL 171 (199)
Q Consensus 170 ~~ 171 (199)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-31 Score=190.24 Aligned_cols=162 Identities=29% Similarity=0.581 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|++|||||||+++|..+.+. ..+.++.+.++......+++..+.+.+||++|++++......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999888775 35677887777666677788889999999999999888888899999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
||+++..+++++..|+..+.... .+.|+++|+||.|+.. +... .+...++...+.+++++||++|.|++++|.+|++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776 3789999999999964 3333 3445677778889999999999999999999999
Q ss_pred HHhCCC
Q 029077 170 KLAGDP 175 (199)
Q Consensus 170 ~~~~~~ 175 (199)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 998664
No 54
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9e-32 Score=190.49 Aligned_cols=163 Identities=30% Similarity=0.449 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|++|||||||+++|..+.+...+.++.+..+... .... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999988888888877665433 4443 5678999999999999988888899999999999
Q ss_pred EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-----c-cHHHHHHHHHcCC-cEEEeccCCCCChHHHH
Q 029077 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (199)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----~-~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~ 164 (199)
||++++++|+.+. .|+..+....++.|+++|+||.|+.+.. . ..+..+++...+. +++++||++|.|+.++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 9999999999886 5888887766789999999999986532 2 3344577888887 89999999999999999
Q ss_pred HHHHHHHhCCCCC
Q 029077 165 LYLARKLAGDPNL 177 (199)
Q Consensus 165 ~~i~~~~~~~~~~ 177 (199)
..+++.+......
T Consensus 160 ~~l~~~~~~~~~~ 172 (187)
T cd04132 160 DTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHhhhhh
Confidence 9999998865544
No 55
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=2.8e-31 Score=188.85 Aligned_cols=163 Identities=28% Similarity=0.486 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|++|||||||+++|+.+.+.. .+.+|.+.++....+..++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888864 6788888877777778888889999999999999888888889999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-----ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-----~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
||+++..+++.+..|+..+....++.|+++|+||.|+.+. ... .+...++...+.+++++||++|.|++++|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998877678999999999998542 122 2334667777889999999999999999999
Q ss_pred HHHHHhCCCC
Q 029077 167 LARKLAGDPN 176 (199)
Q Consensus 167 i~~~~~~~~~ 176 (199)
|++.+...+.
T Consensus 161 i~~~~~~~~~ 170 (193)
T cd04118 161 VAEDFVSRAN 170 (193)
T ss_pred HHHHHHHhcc
Confidence 9998876543
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.7e-31 Score=185.41 Aligned_cols=159 Identities=33% Similarity=0.621 Sum_probs=137.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999988888888888888777777777777778999999999999888888899999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCC-cEEEeccCCCCChHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i~ 168 (199)
||++++.++..+..|+..+.... .+.|+++|+||.|+.+. ... .+...+++..+. .++++||++|.|++++|.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999987654 57899999999999753 333 344567777765 689999999999999999998
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 163 ~~l 165 (165)
T cd01864 163 TEL 165 (165)
T ss_pred HhC
Confidence 753
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.7e-31 Score=185.05 Aligned_cols=158 Identities=30% Similarity=0.550 Sum_probs=134.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
++||+++|.+|||||||++++..+.+...+.++.+ .........++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999888877777765 44445666677788999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
||+++.++++++..|+..+.... .++|+++|+||.|+... ... .+...++...+.+++++||++|.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887753 57999999999998643 222 234566667788999999999999999999998
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-31 Score=191.73 Aligned_cols=162 Identities=28% Similarity=0.556 Sum_probs=140.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 489999999999999999999988888878888888877766665 4567899999999999998888899999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|||++++++|+.+..|+..+.... ...|+++|+||.|+.+. ... .+...+++..++.++++||++|.|+.++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999887654 35778999999999763 333 34457888888999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
++.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9988754
No 59
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.3e-31 Score=188.80 Aligned_cols=156 Identities=21% Similarity=0.390 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccceeE-EEeeEE--------EEecCcEEEEEEEeCCCcccccc
Q 029077 13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
.+||+++|..|||||||+. ++..+. +...+.||.+. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 544432 34567788763 322222 24577889999999999875 3
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCC--------------------cccc-
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVK- 135 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~--------------------~~~~- 135 (199)
....+++++|++|+|||++++.+|+.+. .|+..+....++.|+++||||.|+.+ +.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4566889999999999999999999997 59998887777899999999999863 2222
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
.+...+++..+++|++|||++|.|++++|..++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 34568899999999999999999999999999875
No 60
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3e-31 Score=191.45 Aligned_cols=163 Identities=32% Similarity=0.533 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.++.|.++....+.+++..+.+.+||++|++++......+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999988888788899999988888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||+++..+|+.+..|+..+.... .+.|+++|+||.|+.+. .... +...++...+++++++||++|.|++++|++|
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887765 47999999999998653 3333 4456777788999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
++.+.+
T Consensus 170 ~~~i~~ 175 (216)
T PLN03110 170 LLEIYH 175 (216)
T ss_pred HHHHHH
Confidence 988865
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-31 Score=189.29 Aligned_cols=162 Identities=32% Similarity=0.532 Sum_probs=136.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988887777788764433 344567777899999999999999999999999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+++..+|+.+..|+..+.... .+.|+++|+||.|+.+ +.... +...+++..+++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988886643 4789999999999964 33332 34567777888999999999999999999999
Q ss_pred HHHhCCCCC
Q 029077 169 RKLAGDPNL 177 (199)
Q Consensus 169 ~~~~~~~~~ 177 (199)
+.+......
T Consensus 160 ~~l~~~~~~ 168 (190)
T cd04144 160 RALRQQRQG 168 (190)
T ss_pred HHHHHhhcc
Confidence 988755444
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.6e-31 Score=184.14 Aligned_cols=159 Identities=32% Similarity=0.602 Sum_probs=138.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII 91 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 91 (199)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999888888888898888888788888888999999999998876 467778899999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCC---CCChHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF 164 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~ 164 (199)
|||++++.++..+..|+..+.... .++|+++|+||.|+.+. ... .+...+++..+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887754 57999999999999753 333 344567788889999999999 88999999
Q ss_pred HHHHHHH
Q 029077 165 LYLARKL 171 (199)
Q Consensus 165 ~~i~~~~ 171 (199)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.3e-31 Score=184.91 Aligned_cols=157 Identities=29% Similarity=0.489 Sum_probs=133.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (199)
|+|+|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999888877777776443 34556677788999999999999988888899999999999999
Q ss_pred CChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEeccCCCCC
Q 029077 96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSNYN 159 (199)
Q Consensus 96 ~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~~~ 159 (199)
++.++|+.+. .|+..+....++.|+++|+||.|+.... + ..+...+++..+. .++++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986 5999998877899999999999986421 1 2233467888886 899999999999
Q ss_pred hHHHHHHHHHHHhC
Q 029077 160 FEKPFLYLARKLAG 173 (199)
Q Consensus 160 v~~~~~~i~~~~~~ 173 (199)
++++|..+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988754
No 64
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.9e-31 Score=182.78 Aligned_cols=160 Identities=34% Similarity=0.696 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999888887778888888877777777877889999999999988888899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++..+++.+..|+..+.... ++.|+++|+||.|+.. .... .....+++..+++++++|+.+|.|+++++.+|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887765 6899999999999876 3333 34456778888999999999999999999999998
Q ss_pred HhC
Q 029077 171 LAG 173 (199)
Q Consensus 171 ~~~ 173 (199)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.6e-31 Score=183.82 Aligned_cols=156 Identities=28% Similarity=0.449 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++++.+.+...+.++.+..+ ......+...+.+.+||++|++++......+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988877778776444 333445666789999999999999888888899999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|++++++++.+..|+..+.... ++.|+++|+||.|+.+ +.... +...++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988776643 5789999999999975 33333 3456677778899999999999999999998
Q ss_pred HHH
Q 029077 168 ARK 170 (199)
Q Consensus 168 ~~~ 170 (199)
++.
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 66
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.4e-31 Score=182.69 Aligned_cols=158 Identities=27% Similarity=0.546 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+||+++|++|||||||++++..+ .+...+.++.|.++........ +..+.+.+||++|++.+...+..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999998754 5778888999888776666654 56799999999999988888888999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+|||+++.+++..+..|+..+.....+.|+++|+||.|+.+. .... +...+....+++++++||++|.|++++|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA 160 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence 999999999999999999998877678999999999999653 3333 23455666778899999999999999999999
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04101 161 RAF 163 (164)
T ss_pred HHh
Confidence 875
No 67
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=4.4e-31 Score=189.98 Aligned_cols=155 Identities=29% Similarity=0.486 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|.+|||||||+++|+.+.+.. +.+|.|.++..... ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999888864 56777766544333 4678999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC--------------------cccc-HHHHHHHHHcC-----
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--------------------RQVK-AKQVTFHRKKN----- 146 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~--------------------~~~~-~~~~~~~~~~~----- 146 (199)
|++++++|..+..|+..+.... ++.|+++||||.|+.+ +.+. ++...+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 9999999999998877776543 5789999999999864 2222 34457777765
Q ss_pred ---------CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 147 ---------~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
++|++|||++|.|++++|..+++.+..
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999988864
No 68
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=8.7e-31 Score=181.58 Aligned_cols=159 Identities=33% Similarity=0.574 Sum_probs=133.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 358999999999999999999998877777777766333 3345567777899999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|||+++..++..+..|+..+.... .+.|+++++||.|+.... .. .+...+++..+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999998887653 578999999999997543 23 24456777778899999999999999999999
Q ss_pred HHHH
Q 029077 168 ARKL 171 (199)
Q Consensus 168 ~~~~ 171 (199)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 69
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=1e-30 Score=180.72 Aligned_cols=157 Identities=32% Similarity=0.565 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||+||+..++.....+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999988888788888888888877777777789999999999999888888999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCC-CccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~-~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|++++++|..+..|+..+..... +.|+++++||.|+. ...... +...+++..++.++++|+++|.|+++++.++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876543 69999999999994 344343 3456677778999999999999999999999875
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=8.9e-31 Score=181.60 Aligned_cols=158 Identities=30% Similarity=0.564 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.++.+ +........++..+.+.+||++|++++...+..+++.++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998888777767665 333345556777889999999999999999899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|+++++++..+..|...+.... .+.|+++|+||.|+.+. ... .+...+++..+.+++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988876653 47899999999999763 333 3344677778899999999999999999999998
Q ss_pred HHh
Q 029077 170 KLA 172 (199)
Q Consensus 170 ~~~ 172 (199)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.98 E-value=1.6e-30 Score=185.08 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=130.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~ 85 (199)
+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+|||+|...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999888888888876665555667777899999999997543211 2234689
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCc-cccHHH-HHHH-HHcCCcEEEeccCCCC
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVKAKQ-VTFH-RKKNLQYYEISAKSNY 158 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~-~~~~~~-~~~~-~~~~~~~~~~s~~~~~ 158 (199)
+|++|+|||++++++|+.+..|+..+.... .++|+++|+||+|+.+. ....+. ..++ +..+++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887653 57999999999999653 333332 3343 3568899999999999
Q ss_pred ChHHHHHHHHHHHhCCC
Q 029077 159 NFEKPFLYLARKLAGDP 175 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~ 175 (199)
|++++|..+++.+..+-
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998877544
No 72
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=1.4e-30 Score=180.38 Aligned_cols=159 Identities=35% Similarity=0.617 Sum_probs=139.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|++|||||||++++..+.+...+.++.+.++......+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999998888777788888777777788888889999999999998888888889999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
+|+++.+++.....|+..+.... ++.|+++++||.|+.. ... ..+...++...++.++++|+++|.|+.++|.+|++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887765 6789999999999874 332 33445677788899999999999999999999998
Q ss_pred HH
Q 029077 170 KL 171 (199)
Q Consensus 170 ~~ 171 (199)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 73
>PLN03108 Rab family protein; Provisional
Probab=99.98 E-value=1.1e-30 Score=187.76 Aligned_cols=163 Identities=32% Similarity=0.543 Sum_probs=142.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999998888888888888888877777788888899999999999988888889999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|||+++..++..+..|+..+.... ++.|+++|+||.|+.+. ... .+...+++..+++++++||+++.|++++|.+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999988876554 57999999999999764 333 345678888899999999999999999999999
Q ss_pred HHHhCC
Q 029077 169 RKLAGD 174 (199)
Q Consensus 169 ~~~~~~ 174 (199)
+.+..+
T Consensus 165 ~~~~~~ 170 (210)
T PLN03108 165 AKIYKK 170 (210)
T ss_pred HHHHHH
Confidence 988754
No 74
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=1.7e-30 Score=181.77 Aligned_cols=155 Identities=26% Similarity=0.445 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.+|.. +........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999988888888877763 445556677777899999999999999999888999999999999
Q ss_pred eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEeccCCC
Q 029077 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN 157 (199)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~~~~ 157 (199)
|++++++|+.+. .|+..+....++.|+++++||.|+... .+. .+...+++..+. .++++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999875 688888776678999999999998532 222 234577777777 8999999999
Q ss_pred CChHHHHHHHHH
Q 029077 158 YNFEKPFLYLAR 169 (199)
Q Consensus 158 ~~v~~~~~~i~~ 169 (199)
.|++++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999988764
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.1e-30 Score=182.00 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=136.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
.+.+||+++|.+|||||||+++|+.+.+. ..+.+|.+..+....+..++..+.+.+||++|++.+......+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999998888 78889988777666666777778899999999999888888889999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCC-cEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~ 166 (199)
++|+|++++.++..+..|+..+... .+.|+++|+||.|+.+.. . ..+..++++..++ .++++||++|.|++++|+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 9999999999999888888765332 479999999999996432 2 2233466677776 4799999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
+++.+..
T Consensus 161 l~~~~~~ 167 (169)
T cd01892 161 LATAAQY 167 (169)
T ss_pred HHHHhhC
Confidence 9998763
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=1.7e-30 Score=181.44 Aligned_cols=161 Identities=31% Similarity=0.633 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||++|++.+...+..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777788887777777777888889999999999988888889999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcC-----CCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcC-CcEEEeccCCCCChHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-----~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~ 165 (199)
|+++++++.....|...+..... +.|+++|+||.|+.+ ... ..+...+++..+ .+++++|+++|.|+++++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999998889887766543 789999999999974 332 333445666666 7899999999999999999
Q ss_pred HHHHHHhCC
Q 029077 166 YLARKLAGD 174 (199)
Q Consensus 166 ~i~~~~~~~ 174 (199)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988765
No 77
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=2.9e-30 Score=185.93 Aligned_cols=166 Identities=31% Similarity=0.560 Sum_probs=139.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4578999999999999999999887765 466788888777777777777899999999999999998999999999999
Q ss_pred EEEeCCChhhHhcHHH-HHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~-~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+|||++++++|..+.. |...+.... .+.|+++|+||.|+... ... .+...++...++.++++||++|.|++++|.
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999875 666555432 46799999999999753 222 344567777889999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 029077 166 YLARKLAGDPNL 177 (199)
Q Consensus 166 ~i~~~~~~~~~~ 177 (199)
+|++.+.+.+..
T Consensus 171 ~l~~~~~~~~~~ 182 (211)
T PLN03118 171 ELALKIMEVPSL 182 (211)
T ss_pred HHHHHHHhhhhh
Confidence 999999877643
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=2.4e-30 Score=178.87 Aligned_cols=157 Identities=35% Similarity=0.629 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+.....++.+.++......+++..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988877778888888777776777777899999999999988888888899999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++..++..+..|+..+.... .+.|+++|+||.|+..... ..+...++...+++++++|+++|.|++++++.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999887764 5799999999999985443 334557788889999999999999999999998875
No 79
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.1e-30 Score=179.81 Aligned_cols=150 Identities=23% Similarity=0.360 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 5899999999999999999998888776655533 33 34566777788999999999865 34567899999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC---ccccHH-HHHHHHHc-CCcEEEeccCCCCChHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~---~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|++++.+|+.+..|+..+.... ++.|+++||||.|+.. +.+..+ ..++++.. ++.|++|||++|.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999987764 5789999999999852 333333 34677665 589999999999999999999
Q ss_pred HHHH
Q 029077 167 LARK 170 (199)
Q Consensus 167 i~~~ 170 (199)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 80
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1e-31 Score=180.99 Aligned_cols=195 Identities=78% Similarity=1.245 Sum_probs=181.3
Q ss_pred CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
|.+++.+ ...++++++|..|.||||++++++.+.|...+.+|.|.+..+.....+.+.+.+..||++|++.+..+..
T Consensus 1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd 77 (216)
T KOG0096|consen 1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD 77 (216)
T ss_pred CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence 4455544 7789999999999999999999999999999999999999998887666679999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.++-++...|++||++.+-.+.++..|...+...+.++|++++|||.|..++....+.+.+.+...+.|+++|++++.|+
T Consensus 78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-|.++++.+..+|.+.++..|.+++|+..+|...+.
T Consensus 158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~ 195 (216)
T KOG0096|consen 158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQR 195 (216)
T ss_pred ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhH
Confidence 99999999999999999999999999999988876654
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.3e-30 Score=180.45 Aligned_cols=157 Identities=25% Similarity=0.405 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|+|||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999998888777777765 333445666777889999999999999888889999999999999
Q ss_pred eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEeccCCC
Q 029077 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN 157 (199)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~ 157 (199)
|++++.+|+.+. .|...+....++.|+++|+||.|+.+.. . ..+...+++..+. .++++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999999886 5888887666789999999999985421 1 1234466777775 6999999999
Q ss_pred CChHHHHHHHHHHH
Q 029077 158 YNFEKPFLYLARKL 171 (199)
Q Consensus 158 ~~v~~~~~~i~~~~ 171 (199)
.|++++|..+++++
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 82
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=176.25 Aligned_cols=161 Identities=27% Similarity=0.555 Sum_probs=142.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
.+|+++||++.+|||+|++.|..+.+.....||.|+++....+.+ .+..+++++|||+|+++|++....|++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 479999999999999999999999999999999999988776655 4567999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCc-EEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p-~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|||+++++||+.+..|..+-.... |.++ +++||+|.|+.. +++. ++...++..++..|+++|+++|.|+++.|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 999999999999999998876654 4444 468999999986 3443 4556899999999999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|++.+..
T Consensus 168 laqeIf~ 174 (213)
T KOG0091|consen 168 LAQEIFQ 174 (213)
T ss_pred HHHHHHH
Confidence 9988753
No 83
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.9e-31 Score=174.82 Aligned_cols=189 Identities=27% Similarity=0.417 Sum_probs=155.8
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
..-..-.+||+++|+..+|||||+=|++.+.|......|....+....+.+++....+.+|||+|+++|+.+-..|++.+
T Consensus 7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 34445678999999999999999999999999888888877777777777788889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcCC-CcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+++++|||++|+.||+.++.|..+++....+ +-+++||||+|++++ .+. ++....+..-|..|+++||+.+.|+.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 9999999999999999999999999988654 678899999999863 333 3556788888999999999999999999
Q ss_pred HHHHHHHHhCCC-------CCceecCCCCCCcccchhHh
Q 029077 164 FLYLARKLAGDP-------NLHFVESPALAPPEVQIDLA 195 (199)
Q Consensus 164 ~~~i~~~~~~~~-------~~~~~~~p~~~~~~~~~d~~ 195 (199)
|..+...+.+.. ...-.+.|...+...-+|..
T Consensus 167 Fe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e 205 (218)
T KOG0088|consen 167 FESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNE 205 (218)
T ss_pred HHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCC
Confidence 999988775432 12233445554444444443
No 84
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.6e-30 Score=184.63 Aligned_cols=168 Identities=19% Similarity=0.294 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII 91 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 91 (199)
+||+++|++|||||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999998888776 6666666656666677777788999999999987 223344556 8999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|||++++.+|..+..|+..+.... .+.|+++|+||.|+.+. .+.. +...++...+++++++||++|.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887754 57999999999998653 3333 3346777778899999999999999999999
Q ss_pred HHHHhCCCCCceecCC
Q 029077 168 ARKLAGDPNLHFVESP 183 (199)
Q Consensus 168 ~~~~~~~~~~~~~~~p 183 (199)
++.+.........+++
T Consensus 159 ~~~~~~~~~~~~~~~~ 174 (221)
T cd04148 159 VRQIRLRRDSKEKNER 174 (221)
T ss_pred HHHHHhhhccccccCc
Confidence 9999755555445554
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=5.5e-30 Score=187.61 Aligned_cols=158 Identities=29% Similarity=0.511 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|..|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888876 555556677778899999999999988888888889999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhh----------cCCCcEEEEEeCCCCCC-ccccHHH-HHHHH-HcCCcEEEeccCCCCCh
Q 029077 94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHR-KKNLQYYEISAKSNYNF 160 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~----------~~~~p~iiv~~K~D~~~-~~~~~~~-~~~~~-~~~~~~~~~s~~~~~~v 160 (199)
|+++.++|+.+..|...+... ..+.|+++|+||.|+.+ +.+..+. .+++. ..++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 24789999999999975 3333333 34443 23578999999999999
Q ss_pred HHHHHHHHHHHh
Q 029077 161 EKPFLYLARKLA 172 (199)
Q Consensus 161 ~~~~~~i~~~~~ 172 (199)
+++|.+|++...
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998663
No 86
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.4e-30 Score=181.17 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++.+||+++|..|||||||++++..+.+. .+.||.|...... +...+.+.+||++|++.++..+..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 55689999999999999999998777665 4667877665433 235688999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|+++..++..+..++..+... .++.|+++++||.|+.+.....+........ .+.++++||++|.|+.++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 999999999998887777666432 3579999999999998754332222222111 123568999999999999
Q ss_pred HHHHHHHHhCC
Q 029077 164 FLYLARKLAGD 174 (199)
Q Consensus 164 ~~~i~~~~~~~ 174 (199)
|++|++.+..+
T Consensus 170 ~~~l~~~~~~~ 180 (181)
T PLN00223 170 LDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHhhc
Confidence 99999988754
No 87
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.9e-32 Score=178.13 Aligned_cols=159 Identities=33% Similarity=0.612 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec---------CcEEEEEEEeCCCccccccccccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI 84 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (199)
+|.+.+|++|+||||++.++..+.|......|.|+++....+.++ +..+.+++|||+|+++|+++..++++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999998887663 23588999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccH--HHHHHHHHcCCcEEEeccCCCCCh
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.+-+++++||+++..||-++..|+..+... +.+..++++|||.|+++..+.. +..+++.+.+++||++||-+|.|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 999999999999999999999999988754 5788899999999999855444 345899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 029077 161 EKPFLYLARKLA 172 (199)
Q Consensus 161 ~~~~~~i~~~~~ 172 (199)
++..+.+...+.
T Consensus 170 ~kave~LldlvM 181 (219)
T KOG0081|consen 170 EKAVELLLDLVM 181 (219)
T ss_pred HHHHHHHHHHHH
Confidence 988877776654
No 88
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.7e-30 Score=178.84 Aligned_cols=159 Identities=23% Similarity=0.346 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|.+|||||||+++|..+.+. .+.+|.|...... +...+.+.+||++|+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999998877654 3677777655432 3356899999999999888888889999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHc------CCcEEEeccCCCCChHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++++.++.++..|+..+... ..+.|+++|+||.|+.+.....+...++... .+.++++||++|.|++++|.+
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999998888887653 2468999999999997653333333433322 236889999999999999999
Q ss_pred HHHHHhCCCCCc
Q 029077 167 LARKLAGDPNLH 178 (199)
Q Consensus 167 i~~~~~~~~~~~ 178 (199)
|++.+.+.+.+.
T Consensus 156 l~~~~~~~~~~~ 167 (169)
T cd04158 156 LSRQLVAAGVLD 167 (169)
T ss_pred HHHHHhhccccc
Confidence 999988877653
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=4.9e-30 Score=178.11 Aligned_cols=157 Identities=22% Similarity=0.400 Sum_probs=128.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccCCcEEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 93 (199)
||+++|++|||||||+++++.+.+...+.++.+... ......++..+.+.+||++|+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999988877777777665333 34456677788999999999885 3344566788999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCC-CChHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL 167 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~i 167 (199)
|++++++|+.+..|+..+.... .+.|+++|+||+|+.+ +.... +...+++..+.+|+++|+++| .|++++|..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887753 4799999999999864 33333 345778888899999999999 4999999999
Q ss_pred HHHHh
Q 029077 168 ARKLA 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.8e-29 Score=174.44 Aligned_cols=158 Identities=31% Similarity=0.564 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988776666666666666656666677789999999999988888888899999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+++.+++..+..|+..+..... ++|+++|+||.|+... .... +...+.+..+..++++|++++.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988877653 6899999999999753 3333 3345677778899999999999999999999886
Q ss_pred H
Q 029077 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 91
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=3e-30 Score=179.56 Aligned_cols=155 Identities=19% Similarity=0.282 Sum_probs=122.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
.++.+||+++|.+|||||||+++|..+.+. .+.+|.|.+..... ...+.+.+||++|+++++..+..+++++|++
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i 80 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 80 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 356799999999999999999998776664 45677776654332 2568899999999999988888999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~ 162 (199)
|+|||+++..++.++..|+..+... ..+.|+++|+||+|+.+.....+....+. .....++++||++|.|+++
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 9999999999998888877666543 35799999999999976433333333221 1234689999999999999
Q ss_pred HHHHHHH
Q 029077 163 PFLYLAR 169 (199)
Q Consensus 163 ~~~~i~~ 169 (199)
+|.+|++
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.7e-29 Score=176.93 Aligned_cols=158 Identities=30% Similarity=0.508 Sum_probs=130.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+.||+++|++|||||||+++|..+.+...+.++.+.... ....+++..+.+.+||++|++.+...+..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 468999999999999999999988888878888765443 3456677788999999999999888887888999999999
Q ss_pred EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHHHHHcC-CcEEEeccCC
Q 029077 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKS 156 (199)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~ 156 (199)
||+++.++++.+. .|...+....++.|+++|+||.|+.+... ..+...+++..+ ..+++|||++
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 9999999998875 58888877667899999999999864211 123345566555 4799999999
Q ss_pred CCChHHHHHHHHHHH
Q 029077 157 NYNFEKPFLYLARKL 171 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~ 171 (199)
|.|++++|.++++++
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.3e-29 Score=174.26 Aligned_cols=155 Identities=36% Similarity=0.717 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.++.+.+.........+..+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888889888888888888878899999999999988888899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCC-C-ccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-N-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|+++++++..+..|+..+.... ...|+++++||.|+. . .....+...++...+.+++++|+.++.|+++++.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999999888876 679999999999996 3 3334445567777889999999999999999999886
No 94
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=2.3e-29 Score=175.23 Aligned_cols=159 Identities=27% Similarity=0.526 Sum_probs=133.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|.+|||||||+++|..+.+...+.++.+.. .......++..+.+.+||++|++.+...+..+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 3799999999999999999999888877777777643 344555677778999999999999999999999999999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcC-CcEEEeccCCCCChHHHHHHH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~i 167 (199)
||++++++++.+..|...+.... .+.|+++++||.|+.... .. .+...+++..+ ++++++||++|.|+.++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887642 579999999999996532 22 23446666666 789999999999999999999
Q ss_pred HHHHh
Q 029077 168 ARKLA 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
++.+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 97653
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=4.9e-29 Score=176.38 Aligned_cols=161 Identities=30% Similarity=0.468 Sum_probs=131.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+.||+++|++|+|||||++++..+.+...+.++.+..+. .....++..+.+.+||++|++.+......++..+++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 469999999999999999998878887766666553332 3455566778899999999988877776778999999999
Q ss_pred EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-----------c-cHHHHHHHHHcCC-cEEEeccCCCC
Q 029077 93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY 158 (199)
Q Consensus 93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
||+++.++++.+. .|+..+....++.|+++|+||.|+.+.. . ..+...+++..+. .++++||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 9999999999986 5999998777889999999999985411 1 2344567777775 79999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 029077 159 NFEKPFLYLARKLAGD 174 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~ 174 (199)
|++++|+++++.+...
T Consensus 160 ~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 160 GVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999877543
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.9e-29 Score=176.67 Aligned_cols=157 Identities=24% Similarity=0.339 Sum_probs=123.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+..+||+++|++|||||||++++..+.+. .+.||.|........ ..+.+.+||++|+..+...+..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999998777764 466787766543332 4688999999999999888899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++.....|+..+... .++.|+++|+||.|+.+.....+..... +...+.++++||++|.|++++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 999999999999888887776543 3578999999999997643222222211 122334778999999999999
Q ss_pred HHHHHHHHh
Q 029077 164 FLYLARKLA 172 (199)
Q Consensus 164 ~~~i~~~~~ 172 (199)
|++|.+.+.
T Consensus 166 ~~~l~~~~~ 174 (175)
T smart00177 166 LTWLSNNLK 174 (175)
T ss_pred HHHHHHHhc
Confidence 999987653
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.6e-29 Score=173.01 Aligned_cols=160 Identities=34% Similarity=0.614 Sum_probs=135.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
...+|+++|++|||||||++++..+.+...+.++.+.+.........+..+.+.+||++|+..+......++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999988787777777888877777777777778899999999999888888889999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|||+++..++..+..|+..+..... +.|+++|+||.|+.+ +....+ ...+.+.....++++|+++|.|++++|.+|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999988877653 689999999999874 333333 3455666668899999999999999999998
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=5e-29 Score=172.66 Aligned_cols=158 Identities=31% Similarity=0.579 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||++++..+.+...+.++.+.. .......++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999888777776666533 3344556777899999999999999999999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|++++.++..+..|...+.... .+.|+++|+||+|+.+ ... ..+...++...+++++++|+++|.|++++|..+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887763 5799999999999976 323 33445677778899999999999999999999998
Q ss_pred HHh
Q 029077 170 KLA 172 (199)
Q Consensus 170 ~~~ 172 (199)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 775
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.5e-29 Score=174.49 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=118.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|..|||||||++++..+.+. .+.||.|....... ...+.+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999998777775 46777776543322 25688999999999999888899999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+++..++..+..|+..+... ..+.|+++++||.|+.+.....+..... ....+.++++||++|.|++++|++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 999999999888877666432 2468999999999997643222222211 122345789999999999999998
Q ss_pred HHH
Q 029077 167 LAR 169 (199)
Q Consensus 167 i~~ 169 (199)
|++
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 100
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.5e-29 Score=176.26 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=123.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||++++..+.+.. +.+|.|....... ...+.+.+||++|++.++..+..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999987777754 5677776554332 25689999999999999988899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++.....++..+... ..+.|+++|+||.|+.+.....+..... ....+.++++||++|.|++++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 999999999998887776665432 3578999999999997543222222211 112234678999999999999
Q ss_pred HHHHHHHHhCC
Q 029077 164 FLYLARKLAGD 174 (199)
Q Consensus 164 ~~~i~~~~~~~ 174 (199)
|++|.+.+..+
T Consensus 170 ~~~l~~~i~~~ 180 (182)
T PTZ00133 170 LDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=4.9e-29 Score=175.78 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=128.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+.+||+++|++|||||||++++..+.+... .+|.|.+........ ++..+.+.+||++|++.++..+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 458999999999999999999887776543 567776666655544 335789999999999988888899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHH------HcCCcEEEeccCCCCChHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v~~ 162 (199)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+.....+...+.. ...++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 9999999998888888887776543 4799999999999875322222222221 1124588999999999999
Q ss_pred HHHHHHHHHhCCC
Q 029077 163 PFLYLARKLAGDP 175 (199)
Q Consensus 163 ~~~~i~~~~~~~~ 175 (199)
++.+|++.+.+..
T Consensus 161 l~~~l~~~l~~~~ 173 (183)
T cd04152 161 GLEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886433
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=4.1e-29 Score=174.73 Aligned_cols=157 Identities=18% Similarity=0.301 Sum_probs=122.8
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
.+.+..+||+++|++|||||||+++|... ....+.+|.|........ ..+.+.+||++|++.++..+..+++.+|
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLEY----EGYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 34456789999999999999999998765 334566777754443333 3578999999999988888888999999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCCh
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNF 160 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v 160 (199)
++++|+|++++.++.....|+..+... ..+.|+++|+||+|+.+.....+...+.. ...++++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 999999999999998888887776542 36899999999999976443333333332 34568999999999999
Q ss_pred HHHHHHHHH
Q 029077 161 EKPFLYLAR 169 (199)
Q Consensus 161 ~~~~~~i~~ 169 (199)
+++|.+++.
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999998863
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.7e-28 Score=171.14 Aligned_cols=155 Identities=29% Similarity=0.519 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+...+.++.. +.........+..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999998887666666654 333444556677889999999999988888888889999999999
Q ss_pred eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHcCC-cEEEeccCCCC
Q 029077 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY 158 (199)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
|++++.++.... .|+..+.....+.|+++|+||.|+.+... ..+...++...+. +++++|+++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999987755 58888887777899999999999865332 2234466667776 89999999999
Q ss_pred ChHHHHHHHHH
Q 029077 159 NFEKPFLYLAR 169 (199)
Q Consensus 159 ~v~~~~~~i~~ 169 (199)
|+++++.+|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999998875
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.7e-29 Score=175.09 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=124.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (199)
|+++|++|||||||+++|..+.+...+.+|.|... ..++...+.+.+||++|++.++..+..+++++|++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999988878777888887643 22345678999999999999999999999999999999999
Q ss_pred CChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH------HHHHHHHcCCcEEEeccCC------CCChHHH
Q 029077 96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP 163 (199)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~------~~~v~~~ 163 (199)
+++.++.....|+..+....+++|+++|+||.|+.+.....+ ...+++..++.++++||++ ++|++++
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence 999999988888888866557899999999999876433221 2345566678899998888 9999999
Q ss_pred HHHHHH
Q 029077 164 FLYLAR 169 (199)
Q Consensus 164 ~~~i~~ 169 (199)
|..++.
T Consensus 158 ~~~~~~ 163 (164)
T cd04162 158 LSQLIN 163 (164)
T ss_pred HHHHhc
Confidence 988763
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.9e-28 Score=170.31 Aligned_cols=158 Identities=18% Similarity=0.294 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|..|||||||+++|..+.+...+.++.. .......+.+..+.+.+||++|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999998888665443322 22333445667889999999999887777777789999999999
Q ss_pred eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHH-HHHHHHc-C-CcEEEeccCCCCChHHHHHH
Q 029077 94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQ-VTFHRKK-N-LQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~-~~~~~~~-~-~~~~~~s~~~~~~v~~~~~~ 166 (199)
|++++.+++.+. .|+..+.....+.|+++|+||+|+.+.... .+. ..++... . ..++++||++|.|++++|..
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence 999999999875 688888776678999999999999764432 122 2223322 2 37999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
+.+.+.+
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9988764
No 106
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.8e-29 Score=174.52 Aligned_cols=165 Identities=27% Similarity=0.470 Sum_probs=146.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
...+|++++|+.++|||+|+-.+..+.|+..|.||.. +.+...+.++ ++.+.+.+|||+|++.|..++...+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4578999999999999999999899999999999997 8888888885 9999999999999999999887889999999
Q ss_pred EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc--------------ccHHHHHHHHHcC-CcEEEec
Q 029077 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s 153 (199)
++||++.++.||+++. +|++++.+.+++.|+|+||+|.|+.+.. ...+...+++..| ..|+|||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999999855 6999999999999999999999998421 1234456778877 5699999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCC
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
|++..|++++|+..+++....+.
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999987665
No 107
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-29 Score=161.95 Aligned_cols=167 Identities=32% Similarity=0.508 Sum_probs=151.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
-.+|-+++|+-|+|||+|+.+|....|....+.|.|+++....+.+.+..+++++||++|+++|+...+.+++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|||++.+..+..+..|+..-+... ++..++++|||.|++.... .++..+++.+.|+.+.++|+++|.++++.|-..+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 999999999999999998877664 7888899999999987433 3456689999999999999999999999999999
Q ss_pred HHHhCCCCCc
Q 029077 169 RKLAGDPNLH 178 (199)
Q Consensus 169 ~~~~~~~~~~ 178 (199)
+.+.++-.--
T Consensus 170 kkiyqniqdg 179 (215)
T KOG0097|consen 170 KKIYQNIQDG 179 (215)
T ss_pred HHHHHhhhcC
Confidence 9988665443
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.4e-28 Score=173.66 Aligned_cols=147 Identities=19% Similarity=0.312 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-----CcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
+||+++|..|||||||+++|+.+.+...+.+|.|.++....+.+. +..+.+.+||++|++.++..+..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888999977766655553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--------------------CCCcEEEEEeCCCCCCcc-ccH-----HHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--------------------ENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH 142 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--------------------~~~p~iiv~~K~D~~~~~-~~~-----~~~~~~ 142 (199)
+|+|||++++.+|+.+..|+..+.... .++|+++||||.|+.++. ... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987631 368999999999996542 222 233678
Q ss_pred HHcCCcEEEeccCCCCCh
Q 029077 143 RKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 143 ~~~~~~~~~~s~~~~~~v 160 (199)
.+.+++.++.++..+..+
T Consensus 161 ~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 161 EQGNAEEINLNCTNGRLL 178 (202)
T ss_pred HhcCCceEEEecCCcccc
Confidence 889999999888866544
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=2.9e-28 Score=168.11 Aligned_cols=156 Identities=33% Similarity=0.593 Sum_probs=131.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|++|||||||+++++.+.+...+.++.+ +........++..+.+.+||++|...+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999988777777777766 4455555666667899999999999888888889999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
+++.+++..+..|...+..... ..|+++|+||.|+.+ .... .+...+++..+.+++++|+++|.|+++++.+|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 899999999999976 3333 34456677777899999999999999999999875
Q ss_pred H
Q 029077 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 110
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.3e-28 Score=173.02 Aligned_cols=160 Identities=28% Similarity=0.396 Sum_probs=130.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+.+..+.+.+||++|+..+...+..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999998888777766664 3444556667777899999999999888888888999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc--cccHH-HHHHHH-HcCCcEEEeccCCCCChHHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~--~~~~~-~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+++..+++.+..|+..+.... .++|+++|+||+|+... ....+ ...... ..+..++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988887764 47999999999998652 22222 222222 3457899999999999999999999
Q ss_pred HHHhCCC
Q 029077 169 RKLAGDP 175 (199)
Q Consensus 169 ~~~~~~~ 175 (199)
+.+...+
T Consensus 160 ~~~~~~~ 166 (198)
T cd04147 160 RQANLPY 166 (198)
T ss_pred HHhhccc
Confidence 9876433
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.2e-28 Score=170.50 Aligned_cols=151 Identities=24% Similarity=0.385 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+|+++|++|||||||+++|..+. +...+.+|.|...... ....+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999988765 3556778877554332 235688999999999999888999999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|++++.++.....|+..+... ..++|+++|+||+|+.+.....+...... .....++++||++|.|++++|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999998888887776543 14799999999999976432222211111 123458999999999999999
Q ss_pred HHHHH
Q 029077 165 LYLAR 169 (199)
Q Consensus 165 ~~i~~ 169 (199)
++|.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99864
No 112
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.3e-30 Score=164.42 Aligned_cols=156 Identities=28% Similarity=0.564 Sum_probs=139.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 029077 18 IVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 18 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (199)
++|++++|||+|+-++..+.|- ....+|.|+++....+.+++..+++++|||+|+++|++....|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999887776663 567789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 97 ~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+..||+++..|+.++.++. ..+.+.++|||+|+.. +.+. .+...+++..+++++++|+++|.|++..|-.|++.+..
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 9999999999999999886 4577889999999965 4443 34568899999999999999999999999999987753
No 113
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=170.78 Aligned_cols=161 Identities=32% Similarity=0.567 Sum_probs=145.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|.+|+|||+|..+|+.+.|...|.||.+ +.+.....+++..+.+.++||+|++.+......++.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 568999999999999999999999999999999998 7777788888889999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
||+++++.||+.+..++..+.+.. .++|+++||||.|+.. +.+..+ ...++..++++|+|+||+...+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999994432 4689999999999987 555544 468899999999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998876
No 114
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=1.6e-27 Score=167.66 Aligned_cols=162 Identities=27% Similarity=0.387 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
.||+++|++|||||||++++..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877766666654333 234455666788999999999998888888999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|+++..+++.+..|...+.+.. .+.|+++|+||+|+... .... +...+++..+.+++++|++++.|+.+++.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999888777653 46899999999998653 2222 334566777789999999999999999999999
Q ss_pred HHhCCCC
Q 029077 170 KLAGDPN 176 (199)
Q Consensus 170 ~~~~~~~ 176 (199)
.+...+.
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8876554
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=7.9e-28 Score=168.36 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=119.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|++|+|||||++++..+.+.. +.++.+.+...... ..+.+.+||++|+..+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999988777654 56677755443322 46889999999999888888888999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|+|+++++++.....++..+... ..+.|+++++||.|+.+.....+..... +...++++++||++|.|++++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999998888777766666443 2579999999999997643222221111 2234568999999999999999
Q ss_pred HHHHH
Q 029077 165 LYLAR 169 (199)
Q Consensus 165 ~~i~~ 169 (199)
++|++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99875
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.8e-27 Score=165.43 Aligned_cols=157 Identities=24% Similarity=0.427 Sum_probs=126.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+++|+.|||||||++++..+.. ....||.|........ .++.+.+||.+|+..++..+..++.+++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccc-cccCcccccccceeee----CcEEEEEEeccccccccccceeecccccee
Confidence 36789999999999999999999775543 3467788877666555 568899999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH------HcCCcEEEeccCCCCChH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v~ 161 (199)
|+|+|+++.+.+.+....+..+... ..++|+++++||.|+.+.....+...... ...+.++.||+.+|.|+.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 9999999998888877777766553 35899999999999987544333332221 234558999999999999
Q ss_pred HHHHHHHHHH
Q 029077 162 KPFLYLARKL 171 (199)
Q Consensus 162 ~~~~~i~~~~ 171 (199)
+.++||.+.+
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.8e-27 Score=168.86 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+..||+++|++|||||||++++..+.+ ..+.+|.+....... + ....+.+||+||+..+...+..+++.+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~~~i~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTSEELT--I--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 5679999999999999999999876665 345566654433322 2 3478899999999888887888899999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHH----------------cCCcEEEe
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI 152 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~----------------~~~~~~~~ 152 (199)
+|+|+++..++.....|+..+.... .+.|+++++||.|+.......+....... ....+++|
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 9999999988888777777766532 57999999999999753333333333321 22468999
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 029077 153 SAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~ 171 (199)
||++|.|++++|.+|++.+
T Consensus 172 Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EecCCCChHHHHHHHHhhC
Confidence 9999999999999998753
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.4e-27 Score=166.09 Aligned_cols=150 Identities=24% Similarity=0.304 Sum_probs=119.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
+|+++|++|||||||++++..+ +...+.+|.|....... ...+.+.+||++|+..++..+..+++++|++++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLR----LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEE----ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999997755 66778888886644332 256889999999999998888999999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH------HHHHHc--CCcEEEeccCCC------C
Q 029077 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y 158 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~--~~~~~~~s~~~~------~ 158 (199)
+++..++..+..|+..+.... .++|+++|+||.|+.+.....+.. .+++.. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999988876543 578999999999997754322222 223222 346788999998 8
Q ss_pred ChHHHHHHHHH
Q 029077 159 NFEKPFLYLAR 169 (199)
Q Consensus 159 ~v~~~~~~i~~ 169 (199)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.4e-27 Score=164.07 Aligned_cols=151 Identities=24% Similarity=0.399 Sum_probs=115.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
+|+++|++|||||||++++..... ...+.+|.+........ ....+.+||+||+..+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999764321 23345555555443332 36789999999999988888889999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-------cCCcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~ 159 (199)
+++|+|+++..++.....|+..+.+. ..+.|+++++||+|+.+.....+...+... ...+++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999998888888887776553 257999999999998765433333333221 245799999999999
Q ss_pred hHHHHHHHHH
Q 029077 160 FEKPFLYLAR 169 (199)
Q Consensus 160 v~~~~~~i~~ 169 (199)
+++++++|++
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4.9e-27 Score=162.18 Aligned_cols=151 Identities=19% Similarity=0.317 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
+|+++|++|||||||+++|..+.+.. ..+|.+.+...... ...+.+.+||++|+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999988777653 45666655433322 246889999999999888888888999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH------HHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+++..++.....|+..+.... .+.|+++|+||.|+.+.....+... ++...+.+++++||++|.|++++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 999988888888777765432 5899999999999965322222211 12223456899999999999999998
Q ss_pred HHH
Q 029077 167 LAR 169 (199)
Q Consensus 167 i~~ 169 (199)
|++
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=5e-27 Score=161.86 Aligned_cols=150 Identities=21% Similarity=0.324 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|++|||||||++++..+.+. .+.++.+.+.... +...+.+.+||++|+..++..+..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETV----TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEE----EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999998766654 3456666554332 2356889999999999988888899999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
++++.++.....++..+.+. ..+.|+++|+||+|+.+.....+..... ...+.+++++||++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 99988877666655544332 2579999999999997543222221111 1123469999999999999999998
Q ss_pred HH
Q 029077 168 AR 169 (199)
Q Consensus 168 ~~ 169 (199)
++
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 75
No 122
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=172.25 Aligned_cols=140 Identities=21% Similarity=0.390 Sum_probs=118.7
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-------------CcEEEEEEEeCCCccc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEK 74 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~ 74 (199)
..+...+||+++|..|||||||+++|+.+.+...+.+|.|.++....+.++ +..+.+.+||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 445778999999999999999999999998988889999988766655553 2468899999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-------------CCCcEEEEEeCCCCCCcc--------
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ-------- 133 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------~~~p~iiv~~K~D~~~~~-------- 133 (199)
++..+..++++++++|+|||+++..+|..+..|+..+.... .++|+++||||+|+.+..
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99999999999999999999999999999999999998753 258999999999996532
Q ss_pred ccHHHHHHHHHcCC
Q 029077 134 VKAKQVTFHRKKNL 147 (199)
Q Consensus 134 ~~~~~~~~~~~~~~ 147 (199)
...+..++++..++
T Consensus 176 ~~e~a~~~A~~~g~ 189 (334)
T PLN00023 176 LVDAARQWVEKQGL 189 (334)
T ss_pred cHHHHHHHHHHcCC
Confidence 13445688888774
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.6e-26 Score=159.32 Aligned_cols=150 Identities=23% Similarity=0.373 Sum_probs=119.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
||+++|.+|||||||++++..+. ...+.++.+.......+ ..+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999987766 44566677665544433 46789999999999988888889999999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHH
Q 029077 95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
++++.++.....|+..+.... .+.|+++|+||+|+.......+..... .....+++++|+++|.|++++|++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 999999988888877766543 579999999999997644322222222 2234579999999999999999988
Q ss_pred HH
Q 029077 168 AR 169 (199)
Q Consensus 168 ~~ 169 (199)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 64
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2.3e-26 Score=162.25 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=118.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.++|+++|.+|||||||++++..+.+. .+.+|.+.+...... .++.+.+||++|+..++..+..++.++|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 44599999999999999999998866543 345565544333322 4578999999999988888889999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH---H---------HcCCcEEEeccCC
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---R---------KKNLQYYEISAKS 156 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~~ 156 (199)
+|+|++++.++.....++..+.+. ..++|+++|+||.|+.......+..... . .....+++|||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 999999998888888777766543 2579999999999987543333222211 1 0233589999999
Q ss_pred CCChHHHHHHHHHH
Q 029077 157 NYNFEKPFLYLARK 170 (199)
Q Consensus 157 ~~~v~~~~~~i~~~ 170 (199)
|.|+++++++|.+.
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999765
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=7.6e-26 Score=155.59 Aligned_cols=150 Identities=24% Similarity=0.421 Sum_probs=119.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 95 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (199)
|+++|++|||||||++++..+.+...+.++.+........ ..+.+.+||++|+..++..+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999998888888888888766554322 347899999999999888888999999999999999
Q ss_pred CChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 96 ~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
++..++.....|+..+... ..++|+++|+||.|+.+.....+..... .....+++++|+++|.|+++++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 9998888777776665543 2578999999999987643322222111 12335789999999999999999987
Q ss_pred H
Q 029077 169 R 169 (199)
Q Consensus 169 ~ 169 (199)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=9.8e-26 Score=148.71 Aligned_cols=158 Identities=20% Similarity=0.346 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.++|+++|..|||||||+++|. +.......||.|.......+ +.+.+++||.+|+...++.+..||...|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 348999999999999999999955 44466778888888777766 6899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccH------HHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+|+|++|+..+++....+..+... ....|++++.||.|+....... +..++++...++.+.||+.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 999999999888776655544332 2468999999999998532222 22245577788999999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
-+.|++..+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=7.7e-26 Score=158.99 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ceeEEEeeEEEEe-----cCcEEEEEEEeCCCccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG 76 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~ 76 (199)
+|+++|..++|||||+++|+... +...+.+ +.|.+........ ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999987531 1112222 2344444333222 5567899999999999998
Q ss_pred ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEec
Q 029077 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS 153 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~s 153 (199)
.....+++.+|++|+|+|+++..+++....|.... ..++|+++|+||+|+.+........++++..++ .++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88888899999999999999876666665554322 247899999999998653322222344555555 389999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 029077 154 AKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~ 171 (199)
|++|.|+++++++|.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998875
No 128
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-28 Score=164.02 Aligned_cols=163 Identities=31% Similarity=0.561 Sum_probs=149.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+|++++|..++||||++++++.|-|...+..++|+++......+.+..+...+||++|++++.....+|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 46789999999999999999999999999999999999999888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+||+.+|+.||+....|++.+...+.++|.++|-||+|+.+.... .+...+++.+...++.+|++...|+..+|..|+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999764433 234578888999999999999999999999999
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
..+.+
T Consensus 178 eK~~q 182 (246)
T KOG4252|consen 178 EKLTQ 182 (246)
T ss_pred HHHHH
Confidence 88754
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.1e-25 Score=155.22 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc---------ccccccC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---------RDGYYIH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---------~~~~~~~ 85 (199)
+|+++|.+|||||||+++|....+.... ..+.+............+.+.+|||||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999998876553211 1111211122222334689999999997431110 0011223
Q ss_pred CcEEEEEEeCCChhhH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|++++|+|+++..++ .....|+..+.....+.|+++|+||+|+.+.....+...+......+++++||++|.|++++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence 6899999999987653 45556777776655689999999999997643333333455556778999999999999999
Q ss_pred HHHHHHHH
Q 029077 164 FLYLARKL 171 (199)
Q Consensus 164 ~~~i~~~~ 171 (199)
++++.+.+
T Consensus 160 ~~~l~~~~ 167 (168)
T cd01897 160 KNKACELL 167 (168)
T ss_pred HHHHHHHh
Confidence 99999876
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.4e-25 Score=156.81 Aligned_cols=156 Identities=17% Similarity=0.307 Sum_probs=115.9
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.++|+++|++|||||||++++....+ ..+.++.|.+...... ....+.+||++|+..+...+..+++.+++
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 345689999999999999999999765543 3455666655443332 34788999999998887777888899999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFE 161 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~ 161 (199)
+++|+|+++..++.....+...+.... .++|+++++||.|+.+.....+........ ...++++||++|.|++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999999888877776666554432 479999999999986543222222211111 1247899999999999
Q ss_pred HHHHHHHH
Q 029077 162 KPFLYLAR 169 (199)
Q Consensus 162 ~~~~~i~~ 169 (199)
++|++|++
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 131
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-25 Score=150.58 Aligned_cols=160 Identities=24% Similarity=0.350 Sum_probs=133.2
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+..+|+++|..+|||||++.+|..+..... .||.|.....+.+ +++.|.+||.+|+.+++..+..|+.+.++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 457789999999999999999999777776555 8999998888887 58999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|+|.+|++.+.++...+..+.... ++.|+++++||.|++..-...+..+... .....+..|+|.+|+|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 999999999998888777666555543 5899999999999998655444332222 233457889999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
|.++++.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 132
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=1.9e-24 Score=150.95 Aligned_cols=141 Identities=31% Similarity=0.559 Sum_probs=122.2
Q ss_pred CCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc
Q 029077 36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115 (199)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~ 115 (199)
+.|...+.+|.|.++....+.+++..+.+.+|||+|++++...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677889999999988888888889999999999999999999999999999999999999999999999999887654
Q ss_pred -CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077 116 -ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 116 -~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
++.|+++|+||.|+.+ +.+. .+...++...+..++++||++|.|++++|.+|++.+.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 5789999999999965 3333 34456777788889999999999999999999999876553
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=7.1e-25 Score=152.77 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-EEEEEEeCCCccc----cccccccc---ccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~----~~~~~~~~---~~~~ 86 (199)
+|+++|.+|||||||+++|....... ....+.+.......+.... ..+.+|||||... .+.....+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccc--cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 68999999999999999977543211 1111112111111112223 4899999999642 12222333 3469
Q ss_pred cEEEEEEeCCCh-hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHH-cCCcEEEeccCCCCCh
Q 029077 87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRK-KNLQYYEISAKSNYNF 160 (199)
Q Consensus 87 d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~-~~~~~~~~s~~~~~~v 160 (199)
|++++|+|+++. .+++.+..|...+.... .++|+++|+||+|+.+.....+. ..+... ...+++++|++++.|+
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 999999999998 78888888988887654 36899999999999764443333 344444 3678999999999999
Q ss_pred HHHHHHHHHHH
Q 029077 161 EKPFLYLARKL 171 (199)
Q Consensus 161 ~~~~~~i~~~~ 171 (199)
+++|++|++.+
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=6.8e-24 Score=145.60 Aligned_cols=156 Identities=27% Similarity=0.469 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
.+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+||+||+..+...+..+..+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999988877667777777666665566666668999999999988888888888899999999
Q ss_pred EeCCCh-hhHhcHH-HHHHHHHhhcC-CCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 93 ~d~~~~-~s~~~~~-~~~~~l~~~~~-~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+|.... .++.... .|...+..... +.|+++++||.|+.......... .+......+++++||.+|.|+.+++.+|.
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 998876 5555544 66666665554 88999999999997754333332 33334456799999999999999998763
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=2.1e-24 Score=146.16 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc-----cccccccccccCCcEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA 89 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~ 89 (199)
||+++|++|||||||+++|..+.+ .+.+|.+.++ .-.+||++|.. .++.... .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY------------NDGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE------------cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999876543 2333333221 11689999972 2332222 47899999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHHHHHHHcCC-cEEEeccCCCCChHHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i 167 (199)
++|+|++++.++.. ..|...+ ..|+++|+||+|+.+..... +..++++..+. +++++||++|.|++++|+++
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999988765 3343322 34999999999997643333 33455666665 79999999999999999887
Q ss_pred H
Q 029077 168 A 168 (199)
Q Consensus 168 ~ 168 (199)
+
T Consensus 141 ~ 141 (142)
T TIGR02528 141 N 141 (142)
T ss_pred h
Confidence 5
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=7.5e-24 Score=146.64 Aligned_cols=150 Identities=15% Similarity=0.050 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+.|+++|++|||||||+++|... .+.....++...+.......... ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 36899999999999999998743 22222222222222222233321 468999999999888766667788999999
Q ss_pred EEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHH---cCCcEEEeccCCCCCh
Q 029077 91 IMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNF 160 (199)
Q Consensus 91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~~v 160 (199)
+|+|+++ ..+...+. .+.. ....|+++++||+|+.+... ..+..+..+. .+.+++++|+++|.|+
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence 9999987 23322221 1211 12349999999999975421 1222233333 4678999999999999
Q ss_pred HHHHHHHHH
Q 029077 161 EKPFLYLAR 169 (199)
Q Consensus 161 ~~~~~~i~~ 169 (199)
++++..+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999988764
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=5.9e-24 Score=152.43 Aligned_cols=155 Identities=16% Similarity=0.078 Sum_probs=108.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--cc------c
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--LR------D 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~------~ 80 (199)
...++|+++|++|||||||++++........ +.++.. .......+.+ ...+.+||+||...... .. .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 4568999999999999999999886653221 222222 1222222222 23789999999732111 00 1
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
..+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+..... ........+++++||++|.|
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCC
Confidence 12568999999999999888777777777665543 468999999999997643222 34445567899999999999
Q ss_pred hHHHHHHHHHHH
Q 029077 160 FEKPFLYLARKL 171 (199)
Q Consensus 160 v~~~~~~i~~~~ 171 (199)
+++++.+|.+.+
T Consensus 193 i~~l~~~L~~~~ 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
No 138
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=1.1e-23 Score=160.98 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=117.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-cccccc-------cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~-------~~ 82 (199)
.+.++|+++|.+|||||||+|+|++..+. ...+..+++.......+...+..+.+|||||... +..+.. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 45679999999999999999998866543 2333444333333222333456789999999743 222221 23
Q ss_pred ccCCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCCCC
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN 159 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~ 159 (199)
+..+|++++|+|..+ ++.... .|+..+... +.|.++|+||+|+.+.. ..+..+.+.... ..++++||++|.|
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 678999999999765 344443 344444433 56778899999996542 233334444433 5699999999999
Q ss_pred hHHHHHHHHHHHhCCCCCceecCCCCCC
Q 029077 160 FEKPFLYLARKLAGDPNLHFVESPALAP 187 (199)
Q Consensus 160 v~~~~~~i~~~~~~~~~~~~~~~p~~~~ 187 (199)
+++++++|.+.+.+.+.++-.|..+..+
T Consensus 204 v~eL~~~L~~~l~~~~~~~~~~~~td~~ 231 (339)
T PRK15494 204 IDGLLEYITSKAKISPWLYAEDDITDLP 231 (339)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 9999999999999988777666666554
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.2e-23 Score=156.66 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=114.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------cccccccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~ 86 (199)
+|+++|.+|||||||+|+|++.... ...+..+++...........+..+.+|||||...... ....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6999999999999999998765432 2223333343333332333446789999999754211 123456899
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHHHHHHHcCC-cEEEeccCCCCChHHHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF 164 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~v~~~~ 164 (199)
|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..... ....++...+. .++++||++|.|+++++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9999999999876553 333444433 378999999999997432222 22234444444 79999999999999999
Q ss_pred HHHHHHHhCCCCCceecCCCCCC
Q 029077 165 LYLARKLAGDPNLHFVESPALAP 187 (199)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~p~~~~ 187 (199)
++|.+.+.+.+...-.+..+..+
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQP 179 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCC
Confidence 99999998888665555555443
No 140
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=150.45 Aligned_cols=165 Identities=34% Similarity=0.521 Sum_probs=134.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+..+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+||++|++.++..+..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 34499999999999999999999999998888889887777777766656889999999999999999999999999999
Q ss_pred EEEeCCCh-hhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcccc-------------HHH-HHHHHH---cCCcEEE
Q 029077 91 IMFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-------------AKQ-VTFHRK---KNLQYYE 151 (199)
Q Consensus 91 ~v~d~~~~-~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~-------------~~~-~~~~~~---~~~~~~~ 151 (199)
+|+|.++. .+++....|...+.... .+.|+++|+||.|+...... .+. ...... ....+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999994 45566778999988887 47999999999999765321 111 111111 1233899
Q ss_pred eccC--CCCChHHHHHHHHHHHhCCC
Q 029077 152 ISAK--SNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 152 ~s~~--~~~~v~~~~~~i~~~~~~~~ 175 (199)
+|+. ++.++.++|..+++.+....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999886443
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=9.4e-24 Score=151.07 Aligned_cols=156 Identities=21% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc-----------ccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~ 79 (199)
...++|+++|.+|||||||+++|....+.....+ |++......... .+.+|||||. +.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4568999999999999999999887665433333 555544443322 5899999993 4444444
Q ss_pred cccc----cCCcEEEEEEeCCChhhHhc---------H-HHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc
Q 029077 80 DGYY----IHGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (199)
Q Consensus 80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~ 145 (199)
..++ ..++++++|+|.++...+.. . ......+.. .++|+++|+||+|+.+.. .....++++..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL 157 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence 3443 34578888888764322100 0 111222222 379999999999996543 12223444444
Q ss_pred CC---------cEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077 146 NL---------QYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 146 ~~---------~~~~~s~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
+. +++++||++| |+++++++|++.+.+..+
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 43 5899999999 999999999998765444
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.1e-23 Score=148.47 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR 79 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (199)
-+|+++|..++|||||+++|+. +.+...+ ..+.|.+.......+....+.+.+||+||++.+....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3899999999999999999886 4443332 2345666665555666677899999999999998888
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHHHHHHH-------HcCCcE
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQY 149 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~~~~~~-------~~~~~~ 149 (199)
..+++++|++++|+|+++.. +.....++..+.. .++|+++|+||+|+.+.... .+..++.. ..++++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 89999999999999998742 2222233333332 37899999999999653321 22223332 236789
Q ss_pred EEeccCCCCChHH
Q 029077 150 YEISAKSNYNFEK 162 (199)
Q Consensus 150 ~~~s~~~~~~v~~ 162 (199)
+++||++|.|+.+
T Consensus 160 v~~Sa~~g~~~~~ 172 (194)
T cd01891 160 LYASAKNGWASLN 172 (194)
T ss_pred EEeehhccccccc
Confidence 9999999988743
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=5.5e-23 Score=156.26 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCccccc----ccccc---cccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDG---YYIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~----~~~~~---~~~~ 85 (199)
-.|+++|.++||||||++++...... .....+++..+....+.. ....+.+||+||..... .+... .+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 36999999999999999997754321 122222333333332222 34578999999964311 12222 3567
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccc-cHH-HHHHHHHcCCcEEEeccCCCCCh
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
++++++|+|+++.++++....|..++..+. .++|+++|+||+|+.+... ..+ ...++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 999999999998778888888998887764 3789999999999975432 222 22334555688999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 029077 161 EKPFLYLARKLAGDP 175 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~ 175 (199)
++++++|.+.+.+.+
T Consensus 317 ~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 317 DELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999876533
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=9.9e-23 Score=138.66 Aligned_cols=150 Identities=39% Similarity=0.662 Sum_probs=118.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 029077 18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 18 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (199)
++|++|+|||||++++..... .....++. .+..............+.+||++|...+......+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999886665 34444454 6666666666667889999999998887777788889999999999999
Q ss_pred ChhhHhcHHHH--HHHHHhhcCCCcEEEEEeCCCCCCccccHH---HHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 97 ARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 97 ~~~s~~~~~~~--~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+..++.....| .........+.|+++++||.|+........ ..........+++++|+..+.|+++++.+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99988888776 333333446899999999999976544333 2345556678899999999999999998875
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.90 E-value=1.1e-22 Score=139.90 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 029077 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCA 89 (199)
Q Consensus 18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~ 89 (199)
++|.+|+|||||++++..........+....+.....+..+ ...+.+|||||+..+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 57999999999999987655333333333333333334433 357899999998766542 34444 489999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
++|+|+++.+.. ..+...+.. .++|+++|+||+|+.+.. ...+...+....+.+++++|+.+|.|+.+++..+.
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence 999999876442 233333333 378999999999997643 33333456666788999999999999999999998
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+++
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 764
No 146
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=9.2e-23 Score=131.38 Aligned_cols=157 Identities=21% Similarity=0.328 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.++|+++|..++||||++..|..+. .....||.|.....+.+ +++.|++||.+|+++.+.+++.|+....++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 457899999999999999999966544 45667899988888877 7899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 163 (199)
||+|+.++...+++..-+..+... ..+.++++..||.|+++...+++..... +....-+..+++.+|.|+.+-
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 999999886666655444433332 2578999999999999877666654332 223345788999999999999
Q ss_pred HHHHHHHHh
Q 029077 164 FLYLARKLA 172 (199)
Q Consensus 164 ~~~i~~~~~ 172 (199)
+.++...+.
T Consensus 170 lswlsnn~~ 178 (180)
T KOG0071|consen 170 LSWLSNNLK 178 (180)
T ss_pred HHHHHhhcc
Confidence 999987654
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=4.1e-23 Score=135.69 Aligned_cols=114 Identities=28% Similarity=0.536 Sum_probs=86.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
||+|+|+.|||||||+++|..+.+. ..+.+..+.+..............+.+||++|++.+......++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999877765 12222333333333444455566699999999988887777779999999999
Q ss_pred EeCCChhhHhcHHH---HHHHHHhhcCCCcEEEEEeCCC
Q 029077 93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD 128 (199)
Q Consensus 93 ~d~~~~~s~~~~~~---~~~~l~~~~~~~p~iiv~~K~D 128 (199)
||++++.++..+.. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999988754 5666666667899999999998
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2e-22 Score=140.14 Aligned_cols=155 Identities=15% Similarity=0.157 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
.|+++|.+|||||||+++|..+.+.....+....+......... +....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999988776654332222222222222222 13678999999999888777777889999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH--HHH-HHHH------HcCCcEEEeccCCCCChHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFHR------KKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~--~~~-~~~~------~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|+++....+.. ..+..+.. .++|+++|+||+|+....... +.. .+.. ....+++++|+.+|.|+++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 99875321111 11222222 478999999999987532211 111 1111 123579999999999999999
Q ss_pred HHHHHHHh
Q 029077 165 LYLARKLA 172 (199)
Q Consensus 165 ~~i~~~~~ 172 (199)
++|.+...
T Consensus 159 ~~l~~~~~ 166 (168)
T cd01887 159 EAILLLAE 166 (168)
T ss_pred HHHHHhhh
Confidence 99987653
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.9e-22 Score=138.50 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~ 85 (199)
++|+++|++|+|||||++++...... ...+..+++.......+......+.+||+||...+... ....+.+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA-IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE-eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 58999999999999999997755431 11122233322222222233568899999997654332 2235678
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++|++++.|++++++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999999998766555443332 358999999999999764433 3445567899999999999999999
Q ss_pred HHHHHH
Q 029077 166 YLARKL 171 (199)
Q Consensus 166 ~i~~~~ 171 (199)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 988754
No 150
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=3e-22 Score=162.60 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC-------CCCccc------cceeEEEeeEEEEe-----cCcEEEEEEEeCCCcccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~ 75 (199)
-+++++|+.++|||||+++|+... +...+. .+.|.+.......+ ++..+.+.+|||||+..|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999988532 122222 23355555433322 456789999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEe
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (199)
...+..++..+|++|+|+|+++..+.+....|...+. .+.|+++|+||+|+.+........++....++ .++++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v 160 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA 160 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence 8888889999999999999998777666666654432 37899999999999753322222344444454 38999
Q ss_pred ccCCCCChHHHHHHHHHHHhC
Q 029077 153 SAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~ 173 (199)
||++|.|+++++++|.+.+..
T Consensus 161 SAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 161 SAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eccCCCCHHHHHHHHHHhCCC
Confidence 999999999999999987753
No 151
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=6.7e-23 Score=138.61 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc------ccc--ccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGY--YIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~--~~~ 85 (199)
++|+++|.++||||||+|+|.+... ......|++.......+......+.++|+||.-...... ..+ ..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999776553 233345555555554444445889999999954332221 222 368
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.|+++.|+|+++.+.-. ....++.+. ++|++++.||+|...+ ....+...+.+..+++++.+||.++.|+++++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 99999999998754322 333344443 8999999999998653 33345567778889999999999999999998
Q ss_pred HHH
Q 029077 165 LYL 167 (199)
Q Consensus 165 ~~i 167 (199)
+.|
T Consensus 154 ~~I 156 (156)
T PF02421_consen 154 DAI 156 (156)
T ss_dssp HHH
T ss_pred hhC
Confidence 765
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=5.7e-22 Score=155.93 Aligned_cols=153 Identities=23% Similarity=0.240 Sum_probs=108.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (199)
...++|+++|++|||||||+|+|+.... ....+..|++.......+...+..+.+|||||....... ...+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4568999999999999999999876432 111223333333333333333467799999998654332 2346
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
++++|++++|+|++++.++... |+..+.. .++|+++|+||.|+.+. +...+++..+.+++++|+++ .|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~ 350 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA 350 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence 7899999999999988776654 5555433 37899999999999654 11234556677899999998 69999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+++.+.+.+.+
T Consensus 351 ~~~~L~~~i~~ 361 (442)
T TIGR00450 351 LVDLLTQKINA 361 (442)
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=4.5e-22 Score=151.19 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCccccc----cccccc---ccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDGY---YIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~----~~~~~~---~~~ 85 (199)
-.|+++|.++||||||++++....... ....+++..+....+.. ....+.+||+||..... .+...+ +..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 479999999999999999977543211 11111122221111111 23788999999974321 222233 457
Q ss_pred CcEEEEEEeCCCh---hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHHcCCcEEEeccCCCC
Q 029077 86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~ 158 (199)
++++++|+|+++. .+++.+..|..++..+. .++|+++|+||+|+.+.....+. ..+++..+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 9999999999976 56777778887776653 47899999999999764332222 24555567889999999999
Q ss_pred ChHHHHHHHHHHH
Q 029077 159 NFEKPFLYLARKL 171 (199)
Q Consensus 159 ~v~~~~~~i~~~~ 171 (199)
|+++++.+|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=2.4e-22 Score=140.72 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=102.1
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCccc----ccccc---cccccCCcEE
Q 029077 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA 89 (199)
Q Consensus 18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~---~~~~~~~d~~ 89 (199)
++|++|||||||+++|...... .....+.+........... ...+.+||+||... .+... ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK--VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc--ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999998766431 1111111211111112223 56789999999632 12221 2346789999
Q ss_pred EEEEeCCCh------hhHhcHHHHHHHHHhhc--------CCCcEEEEEeCCCCCCccccHHH--HHHHHHcCCcEEEec
Q 029077 90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~------~s~~~~~~~~~~l~~~~--------~~~p~iiv~~K~D~~~~~~~~~~--~~~~~~~~~~~~~~s 153 (199)
++|+|+++. .++.....|...+.... .+.|+++|+||+|+.......+. .......+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 46777777776665442 37999999999999764333322 234444567899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 029077 154 AKSNYNFEKPFLYLARK 170 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~ 170 (199)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.5e-22 Score=157.76 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=106.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------cccccccccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYI 84 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (199)
..+|+|+|.+|||||||+|+|+.+.. ....++.|++...........+..+.+|||||.+. +......++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999876543 22334555554444443333445688999999763 2222344678
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.+|++|+|+|++++.++.. ..+...+.. .++|+++|+||+|+....... ...+....+ ..+++||++|.|+.+++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~-~~~~~~g~~-~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEADA-AALWSLGLG-EPHPVSALHGRGVGDLL 191 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccchhh-HHHHhcCCC-CeEEEEcCCCCCcHHHH
Confidence 9999999999998765432 234444433 389999999999986532111 111222222 35799999999999999
Q ss_pred HHHHHHHhC
Q 029077 165 LYLARKLAG 173 (199)
Q Consensus 165 ~~i~~~~~~ 173 (199)
++|++.+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999998855
No 156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=1.1e-21 Score=150.27 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=103.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccc------cc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR------DG 81 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~------~~ 81 (199)
..++|+++|.+|||||||+|+|....... .+.+|.... ...+.+. ....+.+|||+|..+ ..... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~--~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT--TRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCE--EEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHHHH
Confidence 44899999999999999999988654321 122333222 2233332 235789999999722 11111 12
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.+.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+... .........+++++||++|.|+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----v~~~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----IERLEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh----HHHHHhCCCCEEEEEccCCCCH
Confidence 3678999999999999887776666665555442 4789999999999965321 1111122346899999999999
Q ss_pred HHHHHHHHHH
Q 029077 161 EKPFLYLARK 170 (199)
Q Consensus 161 ~~~~~~i~~~ 170 (199)
++++..|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.1e-21 Score=139.46 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCCcc-----ccceeEEEeeEEEE----------ecCcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~ 74 (199)
++|+++|+.++|||||+++|... .+...+ ..|.+......... ..+..+.+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999998752 111111 12333333333332 123467899999999865
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc----HHHHH-HHH------
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVT-FHR------ 143 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~----~~~~~-~~~------ 143 (199)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+...... .+..+ +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333334456789999999998754333322222 1121 26799999999998642211 11111 111
Q ss_pred HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 144 ~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
..+.+++++||++|.|+++++..+...+.-
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 235789999999999999999999988764
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=6.5e-22 Score=135.90 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=97.9
Q ss_pred EEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------cccccccCCcE
Q 029077 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC 88 (199)
Q Consensus 17 ~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~ 88 (199)
+++|.+|+|||||++++...... ......+++..............+.+|||||...+.. .....+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 47899999999999998755321 1111222232222222233447899999999877543 22345688999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i 167 (199)
+++|+|..+..+.... .....+.. .+.|+++|+||+|+.+.... .......+. .++++|+++|.|+++++++|
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence 9999999875443322 22222322 26999999999999764332 222333455 78999999999999999999
Q ss_pred HHH
Q 029077 168 ARK 170 (199)
Q Consensus 168 ~~~ 170 (199)
.+.
T Consensus 154 ~~~ 156 (157)
T cd01894 154 LEL 156 (157)
T ss_pred Hhh
Confidence 875
No 159
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=130.18 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=124.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+.+.++|..++|||||+|....+.+...-.||.|.....++- .++.+.+||.+|+..|++.+..|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk----gnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc----CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 35789999999999999999877777777778888876555443 78999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~~ 164 (199)
|+|+.+++.+.....-+..+.... ..+|+++.|||.|+.+.-.....++..... .+.+|.+|+++..|++.+.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence 999999877655544333333322 579999999999999865544443322222 2458999999999999999
Q ss_pred HHHHHHHh
Q 029077 165 LYLARKLA 172 (199)
Q Consensus 165 ~~i~~~~~ 172 (199)
+||.+...
T Consensus 175 ~Wli~hsk 182 (186)
T KOG0075|consen 175 DWLIEHSK 182 (186)
T ss_pred HHHHHHhh
Confidence 99987653
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=8.3e-22 Score=155.76 Aligned_cols=150 Identities=18% Similarity=0.194 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 83 (199)
..++|+++|.+|+|||||+|+|...... ...+..|++.......+...+..+.+|||+|...+... ...++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4589999999999999999998765431 11223333333322222223467899999998654332 12357
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
.++|++++|+|++++.++.....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|++++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 88999999999998877665444432 4578999999999997533221 334567999999999999999
Q ss_pred HHHHHHHHhC
Q 029077 164 FLYLARKLAG 173 (199)
Q Consensus 164 ~~~i~~~~~~ 173 (199)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 161
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=8.8e-22 Score=129.04 Aligned_cols=165 Identities=23% Similarity=0.362 Sum_probs=142.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
+--.+||.++|+...|||||+-.++.+.+...+..+.|+.+-...+.+.+.++.+.+||.+|++++..........+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 44568999999999999999999999999888999999999999999999999999999999999988888888999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-------ccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+++||.+.++.+..+..|+.+-+......--|+||+|.|+-- ..+..+....++-.+.+.++||+....|+.+
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999998877654333357799999632 2233445677888899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 029077 163 PFLYLARKLAGD 174 (199)
Q Consensus 163 ~~~~i~~~~~~~ 174 (199)
+|..+...+..-
T Consensus 177 IFK~vlAklFnL 188 (205)
T KOG1673|consen 177 IFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHhCC
Confidence 999888887643
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.6e-21 Score=137.94 Aligned_cols=155 Identities=18% Similarity=0.122 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
+|+++|.+|||||||++.|........... ..+.+..............+.+||+||...+.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999876655433211 112222222222333457899999999888777777
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHHH------------
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK------------ 144 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~~------------ 144 (199)
.++..+|++++|+|+.++..... ..++..+.. .+.|+++|+||+|+....... +..+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR 157 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence 88899999999999987654332 223333333 489999999999997522211 11222222
Q ss_pred --cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 145 --KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 145 --~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
...+++++|+++|.|+++++.++.+.+.
T Consensus 158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3567999999999999999999998863
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=2.3e-21 Score=138.70 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=77.9
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----H
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K 137 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~ 137 (199)
..+.+||+||++.+...+...+..+|++++|+|++++.........+..+.. ....|+++|+||+|+.+..... +
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQ 161 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHH
Confidence 6789999999988877777778889999999999874211111112222221 2235789999999997532211 1
Q ss_pred HHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 138 ~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
...+... .+.+++++||++|.|++++++.|.+.+...|
T Consensus 162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 1223322 2567999999999999999999998776644
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.3e-21 Score=134.55 Aligned_cols=140 Identities=16% Similarity=0.089 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----cccccCCcEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI 90 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~i 90 (199)
+|+++|.+|+|||||+|++. +.+.. ...+.++ .+... .+||+||........ ...+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999955 43321 1122221 11222 269999973222111 22368999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC--cEEEeccCCCCChHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+|+|+++..++.. .|+..+ ..++|+++++||.|+.+.. .....+++...++ +++++|+++|.|++++|+.+.
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 9999998876533 333332 2467999999999996532 2333456666664 899999999999999999998
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87743
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.5e-21 Score=149.35 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=111.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccc----ccccccc---ccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~----~~~~~~~---~~~~ 86 (199)
.|+++|.++||||||++++...... .....+++..+....+... ...+.+||+||.... ..+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 8999999999999999997754421 1112222333322222222 467999999996431 1222233 4569
Q ss_pred cEEEEEEeCCCh---hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
+++++|+|+++. ..++....|..++..+. .++|.++|+||+|+.+.. .....+.+..+.+++++||+++.|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 999999999864 56666777877777654 378999999999985421 2223455555678999999999999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 029077 161 EKPFLYLARKLAGDPNL 177 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~ 177 (199)
++++.+|.+.+...+..
T Consensus 316 ~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 316 DELLYAVAELLEETPEF 332 (424)
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999998776654
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.1e-21 Score=156.46 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCccc----------cccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK----------FGGL 78 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----------~~~~ 78 (199)
...++|+++|.+|||||||+|+|+..... ...+..|++... ..+..+ +..+.+|||+|..+ +...
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~--~~~~~l~DTaG~~~~~~~~~~~e~~~~~ 285 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELG--GKTWRFVDTAGLRRRVKQASGHEYYASL 285 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEEC--CEEEEEEECCCccccccccchHHHHHHH
Confidence 35689999999999999999998865432 222333333333 233333 34567999999632 1111
Q ss_pred c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHH--HHHHHcCCcEEEe
Q 029077 79 R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV--TFHRKKNLQYYEI 152 (199)
Q Consensus 79 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~--~~~~~~~~~~~~~ 152 (199)
. ..+++.+|++++|+|++++.+++... ++..+.. .++|+++|+||+|+.+..... +.. .+.....++++++
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 1 23468999999999999987777653 3333333 479999999999996532111 111 1222234689999
Q ss_pred ccCCCCChHHHHHHHHHHHhC
Q 029077 153 SAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~ 173 (199)
||++|.|++++|..+.+.+..
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987753
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=4.6e-21 Score=136.58 Aligned_cols=161 Identities=15% Similarity=0.100 Sum_probs=106.3
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc----------ccc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFG 76 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~ 76 (199)
+.......+|+++|.+|+|||||++++....+...+.++.|.+........ +..+.+||+||.. .+.
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 345567889999999999999999998876655566666665544332221 3678999999953 222
Q ss_pred cccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH----HHHHHHHcCCcE
Q 029077 77 GLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQY 149 (199)
Q Consensus 77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~----~~~~~~~~~~~~ 149 (199)
.....++. ..+++++++|.+++...... .+...+.. .+.|+++++||+|+.+...... ...........+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence 23333443 34678888888765432221 11122222 3789999999999865322221 223333335789
Q ss_pred EEeccCCCCChHHHHHHHHHHHhC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+++|+++|.|++++++.|.+.+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999887653
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=8.1e-21 Score=131.47 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY 83 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 83 (199)
...+|+++|++|+|||||++++........ .+....+..............+.+||+||....... ....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 468999999999999999999775443211 111222222223333444578899999997543322 23347
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHH-HHHHHc-CCcEEEeccCCCCCh
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF 160 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~~v 160 (199)
..+|++++|+|+++... +....+...+... +.|+++|+||.|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus 81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 78999999999998621 1122233333332 689999999999984 33323322 333333 367999999999999
Q ss_pred HHHHHHHHHH
Q 029077 161 EKPFLYLARK 170 (199)
Q Consensus 161 ~~~~~~i~~~ 170 (199)
++++..|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=1.1e-20 Score=142.52 Aligned_cols=171 Identities=16% Similarity=0.135 Sum_probs=112.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------ccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~ 82 (199)
++...|+++|.+|||||||+|+|++.... ...+...++...........+..+.+|||||...... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45678999999999999999997765432 2222333333333332333447899999999654321 22335
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHH-HHHHHHcC-CcEEEeccCCCC
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKN-LQYYEISAKSNY 158 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~-~~~~~~~~-~~~~~~s~~~~~ 158 (199)
+..+|++++|+|+++.. ..... ....+.. .+.|+++|+||+|+.. ....... ..+....+ ..++++||++|.
T Consensus 82 ~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 67899999999998732 22222 2222322 3689999999999973 2222222 23333333 569999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 159 NFEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
|+++++++|.+.+.+.+.+...+..+..
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~ 185 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDR 185 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 9999999999999888865444444444
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=8.1e-21 Score=150.45 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=107.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----------
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---------- 79 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~---------- 79 (199)
....++|+++|.+|+|||||+|+|+..... ...+..|++.......+...+..+.+|||||..+.....
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 345689999999999999999998754421 122334444444433333334578999999976543221
Q ss_pred -cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHH-HHHHH----cCCcEEEe
Q 029077 80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK----KNLQYYEI 152 (199)
Q Consensus 80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~-~~~~~----~~~~~~~~ 152 (199)
..+++.+|++++|+|++++.+.+... +...+.. .++|+++|+||+|+.+ .....+.. .+... ..++++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 23578899999999999887665543 2222222 3789999999999972 21111111 11111 34789999
Q ss_pred ccCCCCChHHHHHHHHHHHhC
Q 029077 153 SAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~ 173 (199)
||++|.|++++|.++.+.+..
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 171
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=125.94 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=126.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+++|-.++|||||+.. +.+..+....||.|+....+.+. .++++++||.+|+...+..+..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 36789999999999999999998 55666677889999887777664 679999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
|+|+|.+|..-|+++..-+.++.... ..+|+++..||.|+.-....++.. ...+.....+.+||+++++|+..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d 169 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD 169 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence 99999999988988777666665543 579999999999986544333322 12223345688999999999988
Q ss_pred HHHHHHHH
Q 029077 163 PFLYLARK 170 (199)
Q Consensus 163 ~~~~i~~~ 170 (199)
-..++.+.
T Consensus 170 g~~wv~sn 177 (185)
T KOG0074|consen 170 GSDWVQSN 177 (185)
T ss_pred cchhhhcC
Confidence 77777654
No 172
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=7e-21 Score=147.45 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=113.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccc-------cccccccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-------LRDGYYIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 86 (199)
.|+|+|.+|||||||+|+|..... ...+..++|.......+... ...+.++|+||...... .....+..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 799999999999999999775432 33333444444444433323 34689999999643211 112246789
Q ss_pred cEEEEEEeCC---ChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHHcC--CcEEEeccCCC
Q 029077 87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKN--LQYYEISAKSN 157 (199)
Q Consensus 87 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~--~~~~~~s~~~~ 157 (199)
+++++|+|++ +...+.....|...+..+. .++|+++|+||+|+.+.....+. ..+.+..+ ..++.+||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 9999999988 4455666677777776654 36899999999999754322222 23444433 36899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCc
Q 029077 158 YNFEKPFLYLARKLAGDPNLH 178 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~~~~~ 178 (199)
.|++++++.|.+.+.+.+.++
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~ 339 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREE 339 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccC
Confidence 999999999999998776543
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=8.4e-21 Score=149.65 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc----ccc---ccccccCC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGL---RDGYYIHG 86 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~ 86 (199)
..|+|+|.++||||||+|+|...... .....+++..+....+......+.+||+||.... ..+ ....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 48999999999999999997754321 1223334444444444445578999999996321 111 12235789
Q ss_pred cEEEEEEeCCCh----hhHhcHHHHHHHHHhhc------------CCCcEEEEEeCCCCCCccccHHH-HHHHHHcCCcE
Q 029077 87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 149 (199)
Q Consensus 87 d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~------------~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~~~ 149 (199)
+++++|+|+++. ..+..+..+..++..+. .++|.|+|+||+|+.+.....+. .......++++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999753 23444555555554432 36899999999999754322222 22334457899
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
+++||+++.|+++++.+|.+.+...+
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999886543
No 174
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=8.4e-21 Score=133.38 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=97.5
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------c
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------F 75 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~ 75 (199)
.+.+.....+|+++|.+|+|||||++++....+...+.++.|.+.....+..++ .+.+||+||... +
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence 345567788999999999999999999886654455555666554433333332 689999999532 2
Q ss_pred ccccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcC--
Q 029077 76 GGLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN-- 146 (199)
Q Consensus 76 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~-- 146 (199)
......+++ .++++++|+|++++.+..... +...+.. .++|+++++||+|+.+... ..+..+.....+
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 222223443 457999999998754433332 2233322 3789999999999875321 122223344433
Q ss_pred CcEEEeccCCCCChH
Q 029077 147 LQYYEISAKSNYNFE 161 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~ 161 (199)
..++++||++|.|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 479999999999974
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=3.9e-20 Score=149.69 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=106.3
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+..+|+++|+.++|||||+++|....+.....+....+.....+...+. ..+.+|||||++.|...+...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 4467789999999999999999998876654433322222222222333222 278999999999998888888899999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-------c--CCcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------K--NLQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~--~~~~~~~s~~~~~~ 159 (199)
+++|+|+++...-+....+ .... ..++|+++++||+|+.+... .+....+.. + ..+++++||++|.|
T Consensus 162 aILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999999875322222222 1111 24799999999999965321 111122111 1 24699999999999
Q ss_pred hHHHHHHHHH
Q 029077 160 FEKPFLYLAR 169 (199)
Q Consensus 160 v~~~~~~i~~ 169 (199)
+++++.+|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999998874
No 176
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=3.2e-20 Score=129.42 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc-----------ccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG 81 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~ 81 (199)
.++|+++|.+|+|||||+++++....... ....+.+.......+......+.+||+||....... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 57999999999999999999876542211 111122222211222223345789999996543110 122
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccHHH-HHHHHHc----CCcEEEecc
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQ-VTFHRKK----NLQYYEISA 154 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~~~-~~~~~~~----~~~~~~~s~ 154 (199)
.+..+|++++|+|++++.+..... +...+.. .+.|+++++||+|+.+.. ..... ..+.+.. ..+++++|+
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 356899999999999876654332 2222222 378999999999997642 22211 1222222 367999999
Q ss_pred CCCCChHHHHHHHHHH
Q 029077 155 KSNYNFEKPFLYLARK 170 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~ 170 (199)
+++.|+.++++++.+.
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999999988764
No 177
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=3.8e-21 Score=136.15 Aligned_cols=158 Identities=19% Similarity=0.174 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--C--------------ccccceeEEEeeEEEEec--CcEEEEEEEeCCCcc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--K--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE 73 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 73 (199)
+..+|+++|+.++|||||+++|+..... . ......+.+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999998743211 1 000112222222222233 567899999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHH-HHHHHc----
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKK---- 145 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~-~~~~~~---- 145 (199)
.|.......+..+|++|+|+|+.++...+. ...+..+.. .++|+++|+||+|+....... +.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 888888788899999999999987643322 222223333 388999999999998432222 111 232222
Q ss_pred --CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 146 --NLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 146 --~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
.++++.+||.+|.|+.++++.|.+.+.
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988764
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=4e-20 Score=144.82 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--cccccc------cc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YY 83 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~ 83 (199)
.+|+++|.+|||||||+|+|....... .+..|.. .........+ ...+.+|||+|..+. ...+.. .+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld--~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLD--PTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcC--CceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 589999999999999999987644321 1112222 1122222222 226789999997331 122222 35
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCChH
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFE 161 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 161 (199)
..+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+.+..... ... ...+.+ ++++||++|.|++
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCCCCCCHH
Confidence 78999999999999877776655544444332 479999999999986432111 111 123444 5889999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 029077 162 KPFLYLARKLAGDPN 176 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~ 176 (199)
+++++|.+.+.....
T Consensus 352 eL~e~I~~~l~~~~~ 366 (426)
T PRK11058 352 LLFQALTERLSGEVA 366 (426)
T ss_pred HHHHHHHHHhhhccE
Confidence 999999998865433
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=2.1e-20 Score=148.10 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------ccccccccccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 86 (199)
+|+++|.+|||||||+|+|..+. ........|++...........+..+.+|||||... +......+++.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 58999999999999999987654 223334455554444443333456799999999632 233344567899
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~ 165 (199)
|++++|+|+.++.+... ..+...+.+ .++|+++|+||+|+.+..... .+ ....++ .++++||..|.|+.++++
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999987543222 112222333 278999999999987543222 22 234555 699999999999999999
Q ss_pred HHHHHHhCC
Q 029077 166 YLARKLAGD 174 (199)
Q Consensus 166 ~i~~~~~~~ 174 (199)
.+.+.+...
T Consensus 154 ~i~~~l~~~ 162 (429)
T TIGR03594 154 AILELLPEE 162 (429)
T ss_pred HHHHhcCcc
Confidence 999887543
No 180
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.85 E-value=5.8e-20 Score=152.66 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=117.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----------c
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------D 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------~ 80 (199)
++.++|+++|.+|||||||+|++.+... ...+..|+++......+...+..+.+||+||...+.... .
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 4568999999999999999999875443 334457777777777777778899999999987654321 1
Q ss_pred cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCC
Q 029077 81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+ ...+|++++|+|+++.+.. ..+..++.+. ++|+++++||+|+.+ +....+...+.+..+++++++|+.+|
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 12 2478999999999886542 2344444443 799999999999864 34444455677888999999999999
Q ss_pred CChHHHHHHHHHHHh
Q 029077 158 YNFEKPFLYLARKLA 172 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~ 172 (199)
.|++++++.+.+...
T Consensus 154 ~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 154 RGIEALKLAIDRHQA 168 (772)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999998887653
No 181
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=3.7e-20 Score=134.76 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=124.2
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------ccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRD 80 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~ 80 (199)
..++...|+++|.|++|||||+|++++. -....++...+|+..+..-+...+.++.+.||||...-+. ...
T Consensus 2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CCceEEEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 3467788999999999999999996644 3345556666777777777777789999999999543222 223
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHH-HHHHHhhcCCCcEEEEEeCCCCCCcccc-HHHHHHHHHc-C-CcEEEeccCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKK-N-LQYYEISAKS 156 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~-~-~~~~~~s~~~ 156 (199)
..+..+|++++|+|+++... ....+ ++.+.. .+.|+++++||.|....... ....+.+... . ...+++||+.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 81 SALKDVDLILFVVDADEGWG--PGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHhccCcEEEEEEeccccCC--ccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 34788999999999987432 22222 333333 36899999999998775552 3333333332 2 3589999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 157 NYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
|.|++.+.+.+...+.+.+.+.--|.-+..
T Consensus 157 g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred cCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 999999999999999988877655544444
No 182
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=3.4e-20 Score=150.83 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=113.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC--CCC-----Ccc------ccceeEEEeeEEEEe-----cCcEEEEEEEeCCCccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFE-----KKY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~--~~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 74 (199)
.-+++++|+.++|||||+.+|+.. ... ..+ ..+.|.+.......+ ++..+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 348999999999999999998752 111 111 123454444322222 45578999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc---EEE
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYE 151 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~---~~~ 151 (199)
|...+..++..+|++|+|+|++++...+....|..... .+.|+++|+||+|+.+........++....++. +++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 98888888999999999999998765555555543321 378999999999987543222222334444543 899
Q ss_pred eccCCCCChHHHHHHHHHHHhC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+||++|.|+.+++++|.+.+..
T Consensus 164 iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EecCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999988753
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=9.6e-20 Score=147.94 Aligned_cols=153 Identities=18% Similarity=0.101 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+.|+++|+.++|||||+++|.+. .+..+..++...+.....+..+ +..+.+||+||++.|...+...+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 47999999999999999998742 2233333333333333333333 378999999999998888888889999999
Q ss_pred EEEeCCCh---hhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHc----CCcEEEeccCCCC
Q 029077 91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY 158 (199)
Q Consensus 91 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~ 158 (199)
+|+|++++ .+.+.+ ..+.. .++| +++|+||+|+.+.... .+...+.+.. +.+++++|+++|.
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~ 152 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ 152 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence 99999984 333222 12222 2677 9999999999764321 1223444433 4789999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 029077 159 NFEKPFLYLARKLAGD 174 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~ 174 (199)
|+++++..|.+.+...
T Consensus 153 GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 153 GIGELKKELKNLLESL 168 (581)
T ss_pred CchhHHHHHHHHHHhC
Confidence 9999999988776543
No 184
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.84 E-value=2.8e-19 Score=117.06 Aligned_cols=167 Identities=20% Similarity=0.328 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccc-cccccccccCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKF-GGLRDGYYIHG 86 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~ 86 (199)
.+..||+++|-.++|||+|+.+++.+... .++.+|.. +.+...+.. .+..-.+.++||.|.... ..+...|+.-+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34579999999999999999998876653 45566665 233333322 233457899999998776 67778899999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc--cccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
|++++||+..+++||+.+......|.... ..+|+++++||.|+.+. ....-...|++...+..+++++.+...+-+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence 99999999999999998877666666543 46899999999999753 233344578988899999999999999999
Q ss_pred HHHHHHHHHhCCCCCc
Q 029077 163 PFLYLARKLAGDPNLH 178 (199)
Q Consensus 163 ~~~~i~~~~~~~~~~~ 178 (199)
-|..++..+...+...
T Consensus 166 pf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 166 PFTYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHHHhccCCcccc
Confidence 9999999887655443
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=4.6e-20 Score=146.38 Aligned_cols=149 Identities=23% Similarity=0.184 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--------cccccccccC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYYIH 85 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~ 85 (199)
.+|+++|.+|||||||+|+|..... .......|++...........+..+.+|||||.... ......++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 5899999999999999999875543 112223343332222222223478999999998761 2223445789
Q ss_pred CcEEEEEEeCCChhhHh--cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCChHH
Q 029077 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~ 162 (199)
+|++++|+|++++.+.. .+..|+.. . +.|+++|+||+|+.+.. ....++ ...++. ++++||.+|.|+.+
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHH
Confidence 99999999998753322 23333332 2 79999999999976522 112222 344553 89999999999999
Q ss_pred HHHHHHHHH
Q 029077 163 PFLYLARKL 171 (199)
Q Consensus 163 ~~~~i~~~~ 171 (199)
+++.+....
T Consensus 153 l~~~I~~~~ 161 (435)
T PRK00093 153 LLDAILEEL 161 (435)
T ss_pred HHHHHHhhC
Confidence 999998733
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=8.2e-20 Score=150.04 Aligned_cols=159 Identities=19% Similarity=0.209 Sum_probs=109.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce--eEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
..+..+|+++|+.++|||||+++|....+.....+.. ....+......++....+.+|||||++.|...+..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4566799999999999999999987655543222211 11222333333445689999999999999888888889999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHH------HHHcC--CcEEEeccCCCCC
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYN 159 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~~ 159 (199)
++|+|+|++++...+....+. .+. ..++|+++++||+|+.+.....-...+ ....+ ++++++||++|.|
T Consensus 321 iaILVVDA~dGv~~QT~E~I~-~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G 397 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN-YIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN 397 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH-HHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence 999999998754333222221 222 247899999999999763221111111 12222 6799999999999
Q ss_pred hHHHHHHHHHHH
Q 029077 160 FEKPFLYLARKL 171 (199)
Q Consensus 160 v~~~~~~i~~~~ 171 (199)
+.+++.+|....
T Consensus 398 IdeLle~I~~l~ 409 (742)
T CHL00189 398 IDKLLETILLLA 409 (742)
T ss_pred HHHHHHhhhhhh
Confidence 999999987753
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.9e-19 Score=142.85 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=107.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc-----------c
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~ 79 (199)
...++|+++|.+|+|||||+|+|+.... ....+..|++.......+...+..+.+|||||....... .
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4579999999999999999999775432 122334455555544444344567889999996432211 1
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HH----HHHcCCcEEEecc
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISA 154 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~----~~~~~~~~~~~s~ 154 (199)
..+++.+|++++|+|++++.+.+... +...+.. .++|+++|+||+|+.+.....+.. .+ .....++++++||
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 23567899999999999876655433 2222222 378999999999997432222111 11 1223578999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 029077 155 KSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~ 172 (199)
++|.|+.+++..+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887664
No 188
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=126.09 Aligned_cols=160 Identities=23% Similarity=0.407 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc---CCC----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT---GEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (199)
+..+.|+++|..++|||||+..... +.+ +..-.+|.|.....+.+ ....+.+||.+|++..++++..|+
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHH
Confidence 3467899999999999999986332 111 12334455544444333 467899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHH---HHH---HcCCcEEEeccC
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT---FHR---KKNLQYYEISAK 155 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~---~~~---~~~~~~~~~s~~ 155 (199)
..++++|+++|+++++.|+.....+..+... ..+.|+++..||.|+++.....+... .+. ....++..+||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 9999999999999999888766555544332 36899999999999998665554332 222 334679999999
Q ss_pred CCCChHHHHHHHHHHHhCC
Q 029077 156 SNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 156 ~~~~v~~~~~~i~~~~~~~ 174 (199)
+|+|+++-..|+.+.+..+
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999999877
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.9e-19 Score=148.02 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=107.6
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
....+...|+++|+.++|||||+++|..+.+.....+ |.+.....+.+...+..+.+|||||++.|...+...+..+|
T Consensus 285 ~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aD 362 (787)
T PRK05306 285 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTD 362 (787)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCC
Confidence 3456778999999999999999999876555433222 22222212222223467899999999999888888889999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHH---HHHHcC--CcEEEeccCCCCC
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVT---FHRKKN--LQYYEISAKSNYN 159 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~---~~~~~~--~~~~~~s~~~~~~ 159 (199)
++|+|+|++++..-+....|. ... ..++|+++++||+|+.+... ..+... +...++ ++++++||++|.|
T Consensus 363 iaILVVdAddGv~~qT~e~i~-~a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEAIN-HAK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEEEEEECCCCCCHhHHHHHH-HHH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 999999998853222222221 111 24799999999999965321 111111 122222 6799999999999
Q ss_pred hHHHHHHHHHH
Q 029077 160 FEKPFLYLARK 170 (199)
Q Consensus 160 v~~~~~~i~~~ 170 (199)
+.+++++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.7e-19 Score=150.07 Aligned_cols=156 Identities=24% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--------ccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~ 82 (199)
....+|+++|.+|||||||+|+|+.... ....++.|++...........+..+.+|||+|.... ......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3456899999999999999999875432 334456676666655544444567899999997531 1222345
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChH
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE 161 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 161 (199)
+..+|++++|+|+++...... ..|...+.. .++|+++|+||+|+.+... ...++.. .+. ..+++||++|.|+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~~-lg~~~~~~iSA~~g~GI~ 425 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFWK-LGLGEPYPISAMHGRGVG 425 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHHH-cCCCCeEEEECCCCCCch
Confidence 789999999999986422111 134444443 4899999999999865321 1122222 232 36789999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
+++++|++.+..
T Consensus 426 eLl~~i~~~l~~ 437 (712)
T PRK09518 426 DLLDEALDSLKV 437 (712)
T ss_pred HHHHHHHHhccc
Confidence 999999998854
No 191
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=2.5e-19 Score=145.70 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=102.5
Q ss_pred cCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 029077 20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII 91 (199)
Q Consensus 20 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~ 91 (199)
|.+|||||||+|++.+....... ..|++.......+..++..+.+||+||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999998766543332 3444444333333333456899999998776543 22232 47899999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
|+|+++.+. ...+..++.+ .++|+++|+||+|+.+. ....+...+++..+++++++||++|.|++++++++.+.
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999987432 2233333333 37999999999998653 33334557778889999999999999999999999876
Q ss_pred H
Q 029077 171 L 171 (199)
Q Consensus 171 ~ 171 (199)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 4
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=1.4e-19 Score=142.94 Aligned_cols=155 Identities=20% Similarity=0.177 Sum_probs=104.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (199)
+.+.++|+++|+.++|||||+++|+.. .... ......|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 567899999999999999999998732 1110 01124566666666666677
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc------
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------ 134 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~------ 134 (199)
++.+.+|||||++.+.......+..+|++++|+|+++...+.....+...+.......|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 88999999999988766555557899999999999873222222222222223223346899999999975211
Q ss_pred cHHHHHHHHHcC-----CcEEEeccCCCCChHHHH
Q 029077 135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 135 ~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~ 164 (199)
..+...+++..+ .+++++||++|.|+.+..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 112234444444 469999999999998743
No 193
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.6e-20 Score=119.98 Aligned_cols=158 Identities=22% Similarity=0.348 Sum_probs=120.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
...+|+++|-.|+||||++-++..+.. ....|+.|.....+.+ ++.++++||.+|+-..+..++.|+.+.|.+|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 778999999999999999988554433 3455677766555544 78999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHH-HHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHHHH
Q 029077 92 MFDVTARLTYKNVPT-WHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 92 v~d~~~~~s~~~~~~-~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
|+|.+|+........ ++..+.+. ..+..++++.||.|...+....+.. .-.+...+.++++||.+|.|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999999876544333 34444333 2456677888999998755444332 2233344779999999999999999
Q ss_pred HHHHHHHhCC
Q 029077 165 LYLARKLAGD 174 (199)
Q Consensus 165 ~~i~~~~~~~ 174 (199)
+|+.+.+.+.
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999987653
No 194
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=2.8e-19 Score=122.71 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=100.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccc-------cccccCCcEE
Q 029077 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA 89 (199)
Q Consensus 18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~-------~~~~~~~d~~ 89 (199)
++|+.|+|||||++++....... .....+.+.......... ....+.+||++|........ ..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999977543321 112222222222222221 25689999999977654333 3467899999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-----HHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++|+|+.+........ +...... .+.|+++|+||.|+......... .........+++++|+.++.|+++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 9999999876655443 2333322 48999999999998764333322 12333446789999999999999999
Q ss_pred HHHHHH
Q 029077 165 LYLARK 170 (199)
Q Consensus 165 ~~i~~~ 170 (199)
.++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 998875
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=3.6e-19 Score=140.63 Aligned_cols=154 Identities=20% Similarity=0.170 Sum_probs=105.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (199)
+.+.++|+++|+.++|||||+++|+. +.... ......|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56779999999999999999999874 22211 01112345555545556666
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCccc-----
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV----- 134 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----- 134 (199)
++.+.+||+||++.|.......+..+|++++|+|+++++++... ..+...+.......|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 78999999999988776666667899999999999987543211 111222333334467899999999964211
Q ss_pred -cHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077 135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (199)
Q Consensus 135 -~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
..+...+++..+ ++++++||++|.|+.+.
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 122334555544 57999999999999863
No 196
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=3.4e-19 Score=127.40 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=86.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC-cEEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 93 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 93 (199)
+|+++|++|||||||+++|..+.+...+.++. ................+.+||+||+.+++.....+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999988877655544332 122222221123457899999999999888888888888 9999999
Q ss_pred eCCCh-hhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCC
Q 029077 94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 131 (199)
Q Consensus 94 d~~~~-~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~ 131 (199)
|+++. .++.....|+..+... .++.|+++++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99987 6677666665544322 25899999999999864
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=2.8e-19 Score=148.88 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCcEEEEEEEeCCCcccc----------ccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF----------GGL 78 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~----------~~~ 78 (199)
....+|+++|.+|||||||+|+|+..... ......|++.... ...+++ ..+.+|||+|..+. ...
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 34589999999999999999998866531 1112223333332 233343 45679999996421 111
Q ss_pred c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHH----cCCcEEEe
Q 029077 79 R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEI 152 (199)
Q Consensus 79 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~----~~~~~~~~ 152 (199)
. ...++.+|++++|+|++++.+.+....+ ..+.. .++|+++|+||+|+.+........ .+... ...+.+++
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence 1 2236789999999999988776665433 33333 379999999999997532211111 11111 23467999
Q ss_pred ccCCCCChHHHHHHHHHHHhC
Q 029077 153 SAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~ 173 (199)
||++|.|+++++..+.+.+..
T Consensus 602 SAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=7.8e-19 Score=121.77 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------cccccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI 84 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~ 84 (199)
.|+++|.+|||||||++.+..+.......++.+.+........+. .+.+||++|... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999886666555556665554443333332 889999999533 2222223332
Q ss_pred ---CCcEEEEEEeCCChhh--HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHH--HcCCcEEEec
Q 029077 85 ---HGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR--KKNLQYYEIS 153 (199)
Q Consensus 85 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~--~~~~~~~~~s 153 (199)
+.+.+++++|.++..+ ...+..|+... +.|+++++||+|+....... ......+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 4578889999876532 22233343332 68999999999986432211 1112222 3446799999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 029077 154 AKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~ 171 (199)
++++.++.+++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999988753
No 199
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=4.4e-19 Score=117.48 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=90.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI 90 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i 90 (199)
||+++|+.|||||||+++|..... .+..|..+. +.=.++||||.-. +.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 899999999999999999654322 232232211 1224489999422 2222233456899999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCc-EEEeccCCCCChHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~i~ 168 (199)
++.|++++.+.-. +.+.... ++|+|.|+||.|+.. .........+.+..|+. .|++|+.+|+|++++.++|-
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9999998754321 1222222 789999999999993 33334445566666654 79999999999999988764
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=2e-18 Score=140.06 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=117.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
..-+|+++|+.++|||||+++|+. +.+... ...+.|.+.......+...++.+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999885 333222 123567777777777777889999999999999998
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHHHHHHH-------HcCC
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNL 147 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~~~~~~-------~~~~ 147 (199)
.+..+++.+|++++|+|+++....+....| ..... .++|.++++||+|+.+.... .+..++.. ...+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l-~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVT-KKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHH-HHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 888899999999999999876433322222 22222 37899999999998753322 22223321 2346
Q ss_pred cEEEeccCCCC----------ChHHHHHHHHHHHhCC
Q 029077 148 QYYEISAKSNY----------NFEKPFLYLARKLAGD 174 (199)
Q Consensus 148 ~~~~~s~~~~~----------~v~~~~~~i~~~~~~~ 174 (199)
+++.+|+.+|. ++..+++.|.+.+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 79999999998 5888888888877543
No 201
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=7.2e-19 Score=135.08 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=118.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (199)
..-+|++++|.||+|||||+|.|+ +.-....+.-.|+|+......++-..+.+.+.||+|...-.... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 456899999999999999999955 55566777888999999999888889999999999976543333 334
Q ss_pred ccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 83 YIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+.++|.+++|+|.+.+.+ .+....+ ....++|+++|.||.|+......... ....+.+.+.+|+++|.|++
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE-----LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLD 365 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH-----hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHH
Confidence 789999999999998522 1211111 23357999999999999875443322 22234578999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029077 162 KPFLYLARKLAGD 174 (199)
Q Consensus 162 ~~~~~i~~~~~~~ 174 (199)
.+.+.|.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887655
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=5.4e-19 Score=135.41 Aligned_cols=153 Identities=18% Similarity=0.082 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------cccccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI 84 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~ 84 (199)
..|+++|.+|||||||+|||. +.-......+.|+|+..........+..|.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 579999999999999999965 44456667788888877777666666779999999976432 11234578
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.+|++|+|+|...+-+-++ ......++ ..++|+++|+||+|....+ ....++.+..--..+.+||..|.|+.+++
T Consensus 83 eADvilfvVD~~~Git~~D-~~ia~~Lr--~~~kpviLvvNK~D~~~~e--~~~~efyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 83 EADVILFVVDGREGITPAD-EEIAKILR--RSKKPVILVVNKIDNLKAE--ELAYEFYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHH--hcCCCEEEEEEcccCchhh--hhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence 8999999999987543221 11122222 2379999999999987321 22234443333468999999999999999
Q ss_pred HHHHHHHh
Q 029077 165 LYLARKLA 172 (199)
Q Consensus 165 ~~i~~~~~ 172 (199)
+.+.+.+.
T Consensus 158 d~v~~~l~ 165 (444)
T COG1160 158 DAVLELLP 165 (444)
T ss_pred HHHHhhcC
Confidence 99999884
No 203
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=3.9e-18 Score=115.50 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=118.1
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------Cccc----cceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------KKYE----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
+...+...||+|+|+.++||||+++.+...... ..+. .|...++-...+ +.+..+.+++||||++
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~R 80 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQER 80 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHH
Confidence 345577889999999999999999996643321 0111 112222222222 2347889999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc--CCcEEEe
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEI 152 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (199)
|+-.+..+.+.+.++|+++|.+....+ .....+.-+.... ..|+++..||.|+.+....++..+..... +.+.++.
T Consensus 81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeee
Confidence 999999999999999999999998877 3344444444432 29999999999999988877766555554 7899999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 029077 153 SAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~ 170 (199)
++..+++..+.+..+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988877765
No 204
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=5.4e-19 Score=126.96 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------------------cccceeEEEeeEEEEecCcEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YEPTIGVEVHPLDFFTNCGKIRFY 65 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 65 (199)
||+++|.+|+|||||+++|+...-.-. .....|.+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999874221100 001134444444445555667889
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc------cHHHH
Q 029077 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV 139 (199)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~------~~~~~ 139 (199)
+|||||+..+.......+..+|++++|+|++++..-+.. . ...+.......++++|+||+|+.+... ..+..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766566667899999999999875322111 1 111222222345788899999864221 11222
Q ss_pred HHHHHcC---CcEEEeccCCCCChHH
Q 029077 140 TFHRKKN---LQYYEISAKSNYNFEK 162 (199)
Q Consensus 140 ~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
.+.+..+ .+++.+||++|.|+.+
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 4444555 3489999999999975
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=1.4e-18 Score=141.06 Aligned_cols=157 Identities=16% Similarity=0.237 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
+|+++|+.++|||||+++|+. +.+... .....|.+.......+...++.+.+|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999875 333221 122346666665555666778999999999999988888
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHH-------HcCCcEE
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQYY 150 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~-------~~~~~~~ 150 (199)
.+++.+|++++|+|+++.. ......|+..+... ++|+++|+||+|+.+... ..+...+.. ...++++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 8899999999999998753 22233444444443 789999999999865322 222233332 2356899
Q ss_pred EeccCCCC----------ChHHHHHHHHHHHhCC
Q 029077 151 EISAKSNY----------NFEKPFLYLARKLAGD 174 (199)
Q Consensus 151 ~~s~~~~~----------~v~~~~~~i~~~~~~~ 174 (199)
++||++|. |+..+|+.|.+.+...
T Consensus 160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred echhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 99999995 7999999999887643
No 206
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-18 Score=125.41 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=125.9
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc------------c
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK------------F 75 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------------~ 75 (199)
+-+.+.++|+++|.+++|||||.|.+++... ........++.......+..++.++.++||||.-. +
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 3457789999999999999999999775544 33444555666777777777889999999999422 1
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHH
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTF 141 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~ 141 (199)
.......+..+|.+++++|+++....-. ...+..+.. ..+.|-++|.||.|...+.. .....++
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 1223445678999999999997332221 122333333 35899999999999643211 1101111
Q ss_pred HHH-------------cCC----cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCccc
Q 029077 142 HRK-------------KNL----QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190 (199)
Q Consensus 142 ~~~-------------~~~----~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~ 190 (199)
..+ .|. .+|.+||++|+|++++.++|.......++....+-++.+++++
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~ 289 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEF 289 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHH
Confidence 111 111 2899999999999999999999999999998888888887654
No 207
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=4.4e-21 Score=129.44 Aligned_cols=165 Identities=33% Similarity=0.519 Sum_probs=141.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-EEEEEEeCCCcccccccccccccCCcEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..-++++|+|.-|+|||+++.+++...+...|..++|+++.......+..+ +++.+||+.|++++..+..-+++.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 455799999999999999999999888888899999988877777666554 6889999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCcccc---HHHHHHHHHcCCc-EEEeccCCCCCh
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQ-YYEISAKSNYNF 160 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~---~~~~~~~~~~~~~-~~~~s~~~~~~v 160 (199)
++|||++....|+....|.+.+.... ...|+++..||+|....... ....++++++++. .+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999999987653 23677888899999874333 3445788889875 999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 029077 161 EKPFLYLARKLAGDP 175 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~ 175 (199)
.|.-..+.+++.-+.
T Consensus 183 ~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 183 PEAQRELVEKILVND 197 (229)
T ss_pred hHHHHHHHHHHHhhc
Confidence 999999998887554
No 208
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=3.5e-19 Score=139.12 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=132.0
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
..+..+||+++|+.|||||||+-+++...|.....+.......+ ..+....+...+.|++..+..+.....-++++++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 34678999999999999999999999888877665554322222 2223344568899998665555555667899999
Q ss_pred EEEEEeCCChhhHhcHH-HHHHHHHhhc---CCCcEEEEEeCCCCCCcccc--H-HHHHHHHHcC--CcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--A-KQVTFHRKKN--LQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~--~-~~~~~~~~~~--~~~~~~s~~~~~~ 159 (199)
+.++|+++++++++.+. .|++.+++.. .++|+|+||||.|..+.... + ....+..... -.+++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999999999999876 6999999887 78999999999998764333 1 1222222221 2489999999999
Q ss_pred hHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 160 FEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 160 v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
+.++|....+++.....-++..++...
T Consensus 163 ~~e~fYyaqKaVihPt~PLyda~~qel 189 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPTSPLYDAEEQEL 189 (625)
T ss_pred hHhhhhhhhheeeccCccccccccccc
Confidence 999999888888877766666655544
No 209
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=5.8e-18 Score=123.35 Aligned_cols=150 Identities=15% Similarity=0.055 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-------cccccccCCc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ 87 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 87 (199)
+|+++|.+|||||||+++|.+...... ...+.+.......+......+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999775432111 1111121122222222457889999999754321 1234678999
Q ss_pred EEEEEEeCCChhh-HhcHHHHHH-----------------------------------------HHHhh-----------
Q 029077 88 CAIIMFDVTARLT-YKNVPTWHR-----------------------------------------DLCRV----------- 114 (199)
Q Consensus 88 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~l~~~----------- 114 (199)
++++|+|+++... .+.+...+. -+.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987542 222222111 01000
Q ss_pred --------------cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 115 --------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 115 --------------~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
..-+|+++|+||+|+.+... ...++. ...++++||.+|.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~---~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE---LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH---HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 11258999999999864321 123333 24689999999999999999998865
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=1.1e-17 Score=118.62 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
+.++|+++|..++|||||+++|+..... .......|.+.......+......+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3589999999999999999998743100 01112455565555556666677889999999988777
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc-----HHHHHHHHHc-----C
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKK-----N 146 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~-----~~~~~~~~~~-----~ 146 (199)
.....+..+|++++|+|++.+..-+. ......+... ++| +++++||+|+...... .+...+.... +
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 66777889999999999987532221 1222223222 566 7788999998532211 1222333333 3
Q ss_pred CcEEEeccCCCCCh
Q 029077 147 LQYYEISAKSNYNF 160 (199)
Q Consensus 147 ~~~~~~s~~~~~~v 160 (199)
++++++||++|.+.
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 67999999999885
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.77 E-value=7e-18 Score=132.27 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEEEeeE----E--------------E--EecC------cEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL----D--------------F--FTNC------GKI 62 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~----~--------------~--~~~~------~~~ 62 (199)
++.++|+++|..++|||||++.|.. .+...... ..|.+...- . . ..+. ...
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 5679999999999999999998643 22111100 111111100 0 0 0011 146
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc----HHH
Q 029077 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ 138 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~----~~~ 138 (199)
.+.+||+||++.|...+......+|++++|+|++++.........+..+ ......|+++++||+|+.+.... .+.
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 7899999999998877777778899999999999753111222222222 22234578999999999753221 111
Q ss_pred HHHHHHc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 139 VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 139 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
..+.... +.+++++||++|.|+++++++|.+.+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 2233322 567999999999999999999988664
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=7.8e-18 Score=136.26 Aligned_cols=152 Identities=23% Similarity=0.265 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeEEEeeEEEEe------------cCcEEEEEEEeCCCccccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFG 76 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~l~D~~g~~~~~ 76 (199)
.--|+++|+.++|||||+++|....+... .+.+.|.+........ ......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 34699999999999999999876655322 2333343332221110 0011238899999999998
Q ss_pred ccccccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cH---
Q 029077 77 GLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA--- 136 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~--- 136 (199)
..+..+++.+|++++|+|+++. .++..+. .+.. .++|+++++||+|+.+... ..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 8888888999999999999874 3333222 2222 3789999999999863100 00
Q ss_pred -HH--------HHHHH--------------HcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 137 -KQ--------VTFHR--------------KKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 137 -~~--------~~~~~--------------~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
.. ..+.. ....+++++||++|.|+++++.+|...
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00 00110 113579999999999999999888654
No 213
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=127.86 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=114.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-----------c
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------D 80 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~ 80 (199)
..+||+++|.|++|||||+|+++ +.......+..|++...+...++...-.+.++||+|..+-.... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 57999999999999999999955 55556677788999999988888778889999999965421111 2
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHH--H----HHHHcCCcEEEec
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQV--T----FHRKKNLQYYEIS 153 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~--~----~~~~~~~~~~~~s 153 (199)
..+..++++++|+|++.+-+-+... ....+.+ ...++++|+||+|+-+. ....+.. . +......+.+.+|
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 2366899999999999876544322 1112222 38999999999998654 2222211 2 2222346799999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 029077 154 AKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~ 172 (199)
|++|.++.++|+++.+...
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999999887764
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=1e-17 Score=131.30 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=101.5
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccc--cceeEEEeeE----EEE----------e------c--C----c
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPL----DFF----------T------N--C----G 60 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~----~~~----------~------~--~----~ 60 (199)
...+.++|+++|+.++|||||+.+|.. .+..... ...|.+...- ... + + + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 456789999999999999999998643 2211111 1122222110 000 0 0 0 1
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--- 136 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~--- 136 (199)
...+.+||+||++.+..........+|++++|+|++++. ..+....+ ..+ ......|+++|+||+|+.+.....
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIGIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcCCCcEEEEEEeeccccchhHHHHH
Confidence 367899999999887666655667789999999999643 11111111 112 222234689999999997532221
Q ss_pred -HHHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 137 -KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 137 -~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+...+.+. .+.+++++||++|.|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12233322 2467999999999999999999988764
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=4e-18 Score=123.33 Aligned_cols=146 Identities=20% Similarity=0.147 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCC---------------------------CccccceeEEEeeEEEEecCcEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY 65 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (199)
+|+++|+.++|||||+.+|+.. ... .......|++.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 5899999999999999997631 110 01112345555555556666778999
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---c-
Q 029077 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---V- 134 (199)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~- 134 (199)
+||+||+..+.......+..+|++++|+|+++... .+....+ . +.......|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-L-LARTLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-H-HHHHcCCCeEEEEEEccccccccccHHH
Confidence 99999987776666666788999999999998521 1111222 1 22222346899999999997321 1
Q ss_pred cH----HHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077 135 KA----KQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (199)
Q Consensus 135 ~~----~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 162 (199)
.. +...+....+ .+++++||++|.|+.+
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 11 1112233333 5699999999999873
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1.8e-17 Score=119.59 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------cccceeEEEeeEEEEe-----cCcEEEEEEEeCCCc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ 72 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 72 (199)
+|+++|+.|+|||||+++|+....... .....|.+.......+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999875432211 0112233322222211 345689999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 9887777888899999999999987655432 233333322 368999999999975
No 217
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=3.7e-17 Score=117.84 Aligned_cols=157 Identities=14% Similarity=0.211 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccc-----cccccccCCcE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC 88 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~ 88 (199)
||+++|+.||||||+.+.+. +++.+.-....|.+...-...+ ....+.+++||+||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF-~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIF-HKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHH-S---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHH-cCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999855 4444433344444433333333 24678999999999876433 34667899999
Q ss_pred EEEEEeCCChh---hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--------HHHHHHHHHcC---CcEEEecc
Q 029077 89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN---LQYYEISA 154 (199)
Q Consensus 89 ~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~~~---~~~~~~s~ 154 (199)
+|+|+|+...+ .+..+...+..+.+..++..+-++.+|+|+...... +...+.+...+ +.++.||.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999998443 234455566677778899999999999998642221 12223444555 77999999
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 029077 155 KSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~ 173 (199)
.+ ..+-+.|..+.+.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp TS-THHHHHHHHHHHTTST
T ss_pred cC-cHHHHHHHHHHHHHcc
Confidence 98 4788888888888763
No 218
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.2e-17 Score=129.18 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=101.1
Q ss_pred CCCCccCCCceEEEEEcCCCCCHHHHHHHHhcC-----C--C------C-CccccceeEEEeeEEEEecCcEEEEEEEeC
Q 029077 4 PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F------E-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69 (199)
Q Consensus 4 ~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~-----~--~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (199)
........+.++|+++|..++|||||+++|+.. . + . .......|.+.......+...+..+.+||+
T Consensus 3 ~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDt 82 (394)
T TIGR00485 3 KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDC 82 (394)
T ss_pred hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEEC
Confidence 445566788999999999999999999998632 0 0 0 011123555555555566666778999999
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCcccc-----HHHHHHHH
Q 029077 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHR 143 (199)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~-----~~~~~~~~ 143 (199)
||++.|..........+|++++|+|++++...+.. ..+..+.. .++|.+ +++||+|+.+.... .+...+++
T Consensus 83 pGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 83 PGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred CchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 99988876666666789999999999875322221 22222222 266755 68999998753221 12334454
Q ss_pred HcC-----CcEEEeccCCCC
Q 029077 144 KKN-----LQYYEISAKSNY 158 (199)
Q Consensus 144 ~~~-----~~~~~~s~~~~~ 158 (199)
..+ ++++++|+.+|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 444 689999999874
No 219
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.5e-17 Score=129.79 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=120.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc-
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY- 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~- 83 (199)
++..+|+++|.||||||||+|++.+.+.. .-.-.|+|+......+..+...+.+.|.||.-..... .+.|+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~--VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQK--VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCce--ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 35677999999999999999997754432 2335677888888877777778999999995443222 12232
Q ss_pred -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.+.|+++-|+|+++.+..-.+. -++.+. +.|++++.|+.|..+ +.+..+...+.+..|+++++++|++|.|++
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLylt---lQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLT---LQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHH---HHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 4679999999999875433222 233333 899999999999976 455556678888999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 029077 162 KPFLYLARKLAGDPN 176 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~ 176 (199)
++...+.+....+..
T Consensus 154 ~l~~~i~~~~~~~~~ 168 (653)
T COG0370 154 ELKRAIIELAESKTT 168 (653)
T ss_pred HHHHHHHHhcccccc
Confidence 999999887766654
No 220
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=8.6e-17 Score=131.29 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=100.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
+-|+++|..++|||||+++|.+.. +..+. ..|.+.......+. .....+.+||+||++.|.......+..+|++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~--~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEK--KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcc--cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 358999999999999999976422 22222 22333222211221 1234589999999999877777778899999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHcC---CcEEEeccCCCCChH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFE 161 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~----~~~~~~~~~~~---~~~~~~s~~~~~~v~ 161 (199)
++|+|+++...-+.. ..+..+ ... ++| +++|+||+|+.+.... .+...+....+ .+++++|+++|.|++
T Consensus 79 lLVVda~eg~~~qT~-ehl~il-~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 79 LLVVACDDGVMAQTR-EHLAIL-QLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEEECCCCCcHHHH-HHHHHH-HHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999999874221111 111222 222 455 5789999999753221 12223444333 679999999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876543
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=6.2e-17 Score=126.52 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=109.2
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
.+....+.++|+++|+.++|||||+++|+..... .......|.+.......+......+.++|+||
T Consensus 5 ~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG 84 (394)
T PRK12736 5 KFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG 84 (394)
T ss_pred hhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence 3455778899999999999999999998742110 01112455565555556666667889999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccH-----HHHHHHHHc
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK 145 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~-----~~~~~~~~~ 145 (199)
+++|.......+..+|++++|+|+++...-+.. ..+..+... ++| +|+++||+|+.+..... +...+....
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 988776666667889999999999875322221 222222222 677 67889999987422111 222333334
Q ss_pred C-----CcEEEeccCCCC--------ChHHHHHHHHHHHh
Q 029077 146 N-----LQYYEISAKSNY--------NFEKPFLYLARKLA 172 (199)
Q Consensus 146 ~-----~~~~~~s~~~~~--------~v~~~~~~i~~~~~ 172 (199)
+ ++++++|+++|. ++.++++.+.+.+.
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 3 579999999983 46777777766654
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.74 E-value=7.9e-17 Score=125.99 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcC-------CC-------CCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-------EF-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
.....+.++|+++|..++|||||+++|+.. .+ ........|.+.......+......+.++||||+
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 455688899999999999999999998751 10 0011124555555555555556678899999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCccccH-----HHHHHHHHcC
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKKN 146 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~~-----~~~~~~~~~~ 146 (199)
..|.......+..+|++++|+|+.+...-+. ...+..+.. .++|.+ +++||+|+.+..... +...+....+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 8877666677789999999999987532221 122222222 367855 579999996422111 2223344332
Q ss_pred -----CcEEEeccCCCC----------ChHHHHHHHHHHHh
Q 029077 147 -----LQYYEISAKSNY----------NFEKPFLYLARKLA 172 (199)
Q Consensus 147 -----~~~~~~s~~~~~----------~v~~~~~~i~~~~~ 172 (199)
++++++|+.+|. ++.++++.|.+.+.
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 678999999984 56677777766543
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=6.9e-17 Score=115.10 Aligned_cols=160 Identities=17% Similarity=0.204 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeE---EEeeEEEEecCcEEEEEEEeCCCcccccccccc-----ccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----YYI 84 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~~ 84 (199)
++||+++|.+|+|||||+|.+.+.........+.+. +.....+. ......+.+||++|.......... .+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999998764443322222221 11111111 111246899999997543222222 256
Q ss_pred CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC--cc-----------ccHHHHH----HHHHc-
Q 029077 85 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--RQ-----------VKAKQVT----FHRKK- 145 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~--~~-----------~~~~~~~----~~~~~- 145 (199)
.+|+++++.+. .+... ..|+..+... +.|+++|+||+|+.. .. ..++..+ .....
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78988887432 22222 2455555554 689999999999842 11 0011111 12221
Q ss_pred --CCcEEEeccC--CCCChHHHHHHHHHHHhCCCCCce
Q 029077 146 --NLQYYEISAK--SNYNFEKPFLYLARKLAGDPNLHF 179 (199)
Q Consensus 146 --~~~~~~~s~~--~~~~v~~~~~~i~~~~~~~~~~~~ 179 (199)
.-++|.+|+. .+.++..+.+.|...+.+..+..+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 191 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF 191 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence 2358899998 679999999999999987655443
No 224
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=3.9e-17 Score=119.16 Aligned_cols=116 Identities=20% Similarity=0.183 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--------C-----c---cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K-----K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~--------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (199)
+|+++|..|+|||||+++|+...-. . . .....|.+.......+...+..+.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999998752110 0 0 0122334444444455556789999999999988888
Q ss_pred ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
...+++.+|++++|+|+++....+ ...+...+.. .++|+++++||+|+....
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCC
Confidence 888899999999999999864332 2334443433 378999999999998643
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.74 E-value=9.8e-17 Score=116.06 Aligned_cols=151 Identities=14% Similarity=0.187 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccc------------eeE-----------EEeeE--E-----------EEec
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT------------IGV-----------EVHPL--D-----------FFTN 58 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~------------~~~-----------~~~~~--~-----------~~~~ 58 (199)
||+++|+.++|||||+++|..+.+....... .|. +.... . ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999998865553211000 111 10000 0 0111
Q ss_pred CcEEEEEEEeCCCcccccccccccc--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA 136 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~ 136 (199)
.....+.+.|+||++.+.......+ ..+|++++|+|++.+..-. ...++..+... ++|+++|.||+|+.+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 2346789999999988755444333 3689999999988654322 12233333332 78999999999986533222
Q ss_pred HHH----HHHH--------------------------HcCCcEEEeccCCCCChHHHHHHHH
Q 029077 137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 137 ~~~----~~~~--------------------------~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+.. ...+ ....+++.+|+.+|.|+++++..|.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 211 1221 1124799999999999999887664
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.2e-16 Score=118.50 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------cc---ccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
-+|+++|+.|+|||||+++|+.. .... .+ ....|.+.......+...++.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 47999999999999999998742 1110 00 0012333444444556678899999999998
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~ 134 (199)
.|.......++.+|++++|+|+++..... ...+...... .++|+++++||+|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence 88776677789999999999998753222 1222222222 3789999999999876543
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=2.1e-16 Score=128.46 Aligned_cols=154 Identities=23% Similarity=0.267 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeEEEeeEEEEe--cCcE-----E-----EEEEEeCCCcc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQE 73 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~g~~ 73 (199)
..+...|+++|+.++|||||+++|...... .....+.|.+........ .+.. . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 345568999999999999999997643321 112234443332221100 0111 1 26899999999
Q ss_pred cccccccccccCCcEEEEEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----------------
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---------------- 134 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---------------- 134 (199)
.|...+...+..+|++++|+|+++ +.++..+. .+.. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 998888878889999999999997 34443332 1222 3789999999999852100
Q ss_pred -cHH--------HHHHHHH---------------cCCcEEEeccCCCCChHHHHHHHHH
Q 029077 135 -KAK--------QVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 135 -~~~--------~~~~~~~---------------~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
..+ ....... ...+++++||++|.|+.+++..+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 000 0011111 1356899999999999998888764
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=3.8e-16 Score=114.38 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=104.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEE-EEEEEeCCCcccccccc-------cccccCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLR-------DGYYIHG 86 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~g~~~~~~~~-------~~~~~~~ 86 (199)
.|.++|-|++|||||++.+..... ..-+...+|..+....+...+. .+.+-|+||.-...... ...+..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 688999999999999998664332 2223333444444444433333 48999999965433222 2236789
Q ss_pred cEEEEEEeCCCh---hhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCC
Q 029077 87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYN 159 (199)
Q Consensus 87 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~ 159 (199)
+.+++|+|++.. ..++.+.....++..+ ..++|.++|.||+|+.+.+... ..++++...-+ ++++||+++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence 999999999987 6666666665555544 3579999999999997433222 23455555544 99999999999
Q ss_pred hHHHHHHHHHH
Q 029077 160 FEKPFLYLARK 170 (199)
Q Consensus 160 v~~~~~~i~~~ 170 (199)
+.++.+.|.+.
T Consensus 355 l~~ll~~lr~~ 365 (366)
T KOG1489|consen 355 LEELLNGLREL 365 (366)
T ss_pred hHHHHHHHhhc
Confidence 99998877653
No 229
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.69 E-value=6.1e-16 Score=122.28 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=103.4
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNC 59 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (199)
.+.++++|+++|+.++|||||+.+|+... ... ......|.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 35778999999999999999999877311 000 1112234455554555666
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHh-------cHHHHHHHHHhhcCCC-cEEEEEeCCCCCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDVKN 131 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~-p~iiv~~K~D~~~ 131 (199)
....+.++|+||+++|.......+..+|++|+|+|+++. .|+ ....... +... .++ ++++++||+|+.+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~-~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT-LGVKQMICCCNKMDATT 159 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH-cCCCcEEEEEEcccCCc
Confidence 788999999999999988888889999999999999874 222 1111111 1111 256 4788899999863
Q ss_pred cc--------ccHHHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077 132 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (199)
Q Consensus 132 ~~--------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 162 (199)
.. ...+...+++..+ ++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1223345566555 5699999999999853
No 230
>CHL00071 tufA elongation factor Tu
Probab=99.69 E-value=8.3e-16 Score=120.78 Aligned_cols=150 Identities=14% Similarity=0.048 Sum_probs=99.6
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
..+.+.++|+++|..++|||||+++|+...-. .......|.+.......+......+.+.|+||+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 34678899999999999999999998753110 0111225556555555555566788999999988
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc-----HHHHHHHHHcC-
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN- 146 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~-----~~~~~~~~~~~- 146 (199)
.+.......+..+|++++|+|+.....-+. ...+..+.. .++| +|+++||+|+.+.... .+...+.+..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 876666667789999999999986532221 122222222 2678 6788999999753221 12223333333
Q ss_pred ----CcEEEeccCCCCCh
Q 029077 147 ----LQYYEISAKSNYNF 160 (199)
Q Consensus 147 ----~~~~~~s~~~~~~v 160 (199)
.+++.+|+.+|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 67999999988643
No 231
>COG2262 HflX GTPases [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=113.84 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=115.5
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--cccccccc--
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY-- 82 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~-- 82 (199)
.......|+++|..++|||||+|+|...... .....|...+...... . ....+.+.||.|--. -..+..+|
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l--~-~g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL--G-DGRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe--C-CCceEEEecCccCcccCChHHHHHHHH
Confidence 3456678999999999999999997743322 2333444333333332 2 256788899998422 11222222
Q ss_pred ----ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCC
Q 029077 83 ----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
...+|.++.|+|++++.....+.....-+.+. ..+.|+|+|.||+|+........ ......-..+.+||++|
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~---~~~~~~~~~v~iSA~~~ 341 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILA---ELERGSPNPVFISAKTG 341 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhh---hhhhcCCCeEEEEeccC
Confidence 45799999999999997666666666666554 35799999999999765443111 11111115899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 158 YNFEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
.|++.++..|...+........+.-|...
T Consensus 342 ~gl~~L~~~i~~~l~~~~~~~~l~lp~~~ 370 (411)
T COG2262 342 EGLDLLRERIIELLSGLRTEVTLELPYTD 370 (411)
T ss_pred cCHHHHHHHHHHHhhhcccceEEEcCccc
Confidence 99999999999999866665555555533
No 232
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=103.77 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=105.7
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc----------ccccc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGG 77 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 77 (199)
-++....-|+++|.++||||||+|.|.+..--.....|.|.|...-.+.+++. +.+.|.||- +.+..
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence 34456678999999999999999998875544455567776665555554443 788999993 23334
Q ss_pred ccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHc----CCc-
Q 029077 78 LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ- 148 (199)
Q Consensus 78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~----~~~- 148 (199)
....|+. +-.++++++|+.....-.+. +.+..+... ++|++++.||+|.-......... ..++.. ...
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 4444543 35678888898765433221 223333332 89999999999987644333222 222222 222
Q ss_pred -EEEeccCCCCChHHHHHHHHHHHhC
Q 029077 149 -YYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 149 -~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
++..|+.++.|++++...|.+.+..
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhc
Confidence 7788999999999999999887653
No 233
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=7.6e-16 Score=119.95 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc--CCCC-----------CccccceeEEEeeEEEEe---cCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE-----------KKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~ 74 (199)
.+.-++.|+-.-.-|||||..+|+. +... -...+..|++.......+ +++.+.++++||||+..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3445899999999999999999873 2111 123355677766554433 35669999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHHHHHHHcCCcEEE
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYE 151 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~~~~~~~~~~~~~ 151 (199)
|.......+.-|+++++|+|+..+---+....++..+. .+..+|.|.||+|++...... +..++......+.+.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~ 214 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY 214 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence 99999888999999999999998765555555544443 378899999999998755443 333444455567999
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~ 185 (199)
+||++|.|+++++.+|++.+...... .|.|..
T Consensus 215 vSAK~G~~v~~lL~AII~rVPpP~~~--~d~plr 246 (650)
T KOG0462|consen 215 VSAKTGLNVEELLEAIIRRVPPPKGI--RDAPLR 246 (650)
T ss_pred EEeccCccHHHHHHHHHhhCCCCCCC--CCcchH
Confidence 99999999999999999998754433 455543
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=5.8e-16 Score=115.43 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--C--ccc------------cceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFE--K--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (199)
+|+++|++|||||||+++++..... . ... ...+.+.......+...++.+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999997642211 0 000 00122222222333445678999999998877667
Q ss_pred ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEE--EeccCC
Q 029077 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY--EISAKS 156 (199)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~--~~s~~~ 156 (199)
...++..+|++++|+|+++.........|. .+.. .++|.++++||+|............+....+..++ .+...+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 777889999999999998765443333332 2222 37899999999999865333222334444454433 334555
Q ss_pred CCChHHHHHHH
Q 029077 157 NYNFEKPFLYL 167 (199)
Q Consensus 157 ~~~v~~~~~~i 167 (199)
|.++..+.+.+
T Consensus 158 ~~~~~~~vd~~ 168 (268)
T cd04170 158 GDDFKGVVDLL 168 (268)
T ss_pred CCceeEEEEcc
Confidence 55554443333
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=1.1e-15 Score=113.85 Aligned_cols=141 Identities=17% Similarity=0.278 Sum_probs=89.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---- 77 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 77 (199)
-.++|+++|.+|+|||||+|+|+....... ..+|.+..........++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999887665332 234444455555555566678999999999433211
Q ss_pred ----------------------ccccccc--CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 78 ----------------------LRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
.+...+. .+++++++++.+.. ..... ...+..+ ..++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---SKRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---hccCCEEEEEECCCcCCH
Confidence 1112233 46777777776542 11111 2223333 337899999999998542
Q ss_pred c----ccHHHHHHHHHcCCcEEEeccCC
Q 029077 133 Q----VKAKQVTFHRKKNLQYYEISAKS 156 (199)
Q Consensus 133 ~----~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
. ......+.+...++.+|......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 12233466777888888776543
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=5.5e-16 Score=121.59 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------ccccceeEEEeeEEEEecCcEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------------------------KYEPTIGVEVHPLDFFTNCGKI 62 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 62 (199)
+||+++|+.++|||||+.+|+... ... ......|.+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999986321 100 0011223334444444455667
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH----
Q 029077 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA---- 136 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~---- 136 (199)
.+.++|+||++.|.......+..+|++++|+|+..+..-+....+. +.......++++++||+|+.+... ..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 8999999999988766666788999999999998764333222222 222223446888999999864221 11
Q ss_pred HHHHHHHHcC---CcEEEeccCCCCChHH
Q 029077 137 KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (199)
Q Consensus 137 ~~~~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
+...+.+..+ ++++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1112333333 4699999999999875
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=6.5e-16 Score=114.69 Aligned_cols=115 Identities=24% Similarity=0.234 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (199)
+|+++|..|+|||||+++|+. +.... ......|.+.......+...+..+.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999863 21100 01123455555555555556788999999999888777
Q ss_pred ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
....++.+|++++|+|+.+...-+. ......+.. .++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 8888999999999999987532222 122222322 37899999999998753
No 238
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=4.6e-15 Score=105.69 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----c-------ccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----R-------DGY 82 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~-------~~~ 82 (199)
++|+++|.+|||||||+|.+++...........+.+..............+.++||||....... . ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 48999999999999999998765432111111222222222222224568999999996543210 0 112
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCCCcc--------ccHHHHHHHHHcCCcEEE
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE 151 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~~~~--------~~~~~~~~~~~~~~~~~~ 151 (199)
....+++++|+++.+. +- .-...+..+...+. -.++++++|+.|..... .......+.+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3578999999998762 21 11223333333322 36788999999865422 112233445555555544
Q ss_pred ec-----cCCCCChHHHHHHHHHHHhCCCCCceec
Q 029077 152 IS-----AKSNYNFEKPFLYLARKLAGDPNLHFVE 181 (199)
Q Consensus 152 ~s-----~~~~~~v~~~~~~i~~~~~~~~~~~~~~ 181 (199)
.+ +..+.+++++++.|.+.+.++....+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~ 193 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTN 193 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 44 4567889999999999999866555544
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=5.6e-16 Score=123.40 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCC--CC--------------c---------------cccceeEEEeeEEEEec
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------K---------------YEPTIGVEVHPLDFFTN 58 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~--~~--------------~---------------~~~~~~~~~~~~~~~~~ 58 (199)
....++|+++|..++|||||+.+|+...- .. . .....|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999874321 10 0 00112333333334445
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~ 136 (199)
.....+.++||||++.|.......+..+|++++|+|+.++..-+....+ .+.......|+++++||+|+.+... ..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 5667899999999988766555567899999999999875432222221 1222222357889999999864211 11
Q ss_pred HH----HHHHHHc----CCcEEEeccCCCCChHHH
Q 029077 137 KQ----VTFHRKK----NLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 137 ~~----~~~~~~~----~~~~~~~s~~~~~~v~~~ 163 (199)
+. ..+.... ..+++++|+++|.|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11 1223332 367999999999999764
No 240
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=111.43 Aligned_cols=165 Identities=15% Similarity=0.129 Sum_probs=110.7
Q ss_pred CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-c----cc--
Q 029077 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-F----GG-- 77 (199)
Q Consensus 5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~----~~-- 77 (199)
.-+..++....|+|.|.||||||||++.+..... +..+...++..-....++.+...++++||||.-. - +.
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 3455667888999999999999999999654332 3333333344444445566778999999999421 1 11
Q ss_pred --cccccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEe
Q 029077 78 --LRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEI 152 (199)
Q Consensus 78 --~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~ 152 (199)
...+.-.-.++++|++|.+... +.+.-..++.++..... .|+++|.||.|..+.....+.. .+....+.....+
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~ 316 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKI 316 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccce
Confidence 1122234578999999998654 34555566777766655 8999999999998655544443 3344444447788
Q ss_pred ccCCCCChHHHHHHHHHHHh
Q 029077 153 SAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~ 172 (199)
++..+.+++.+...+.....
T Consensus 317 ~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 317 SATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred eeeehhhHHHHHHHHHHHhh
Confidence 88888888887777766543
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.2e-15 Score=121.22 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=100.2
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCC------CCC--------ccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
...++.++|+++|..++|||||+++|+... ... ......|.+.......+...+..+.++|+||+.
T Consensus 76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 346788999999999999999999988411 111 112335555555454555566788999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccH-----HHHHHHHHc--
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK-- 145 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~-----~~~~~~~~~-- 145 (199)
.|.......+..+|++++|+|+.+...-+. ..++..+.. .++| +++++||+|+.+..... +...+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 887777777789999999999987643322 222222222 2677 77889999997522111 222333332
Q ss_pred ---CCcEEEeccCCCCC
Q 029077 146 ---NLQYYEISAKSNYN 159 (199)
Q Consensus 146 ---~~~~~~~s~~~~~~ 159 (199)
.++++.+|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 46799999988853
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=3.1e-15 Score=117.01 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=106.2
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
......+.++|+++|..++|||||+++|+..... .......|.+.......+...+..+.+.||||
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 3455688899999999999999999998752110 01112455665555555655667889999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCccccH-----HHHHHHHHc
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKK 145 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~~-----~~~~~~~~~ 145 (199)
+..|.......+..+|++++|+|+.++..-+ ....+..+.. .++|.+ +++||+|+.+..... +...+....
T Consensus 85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 9887666666778999999999998753222 1222233332 267876 578999997422111 122333332
Q ss_pred -----CCcEEEeccCCCC----------ChHHHHHHHHHHH
Q 029077 146 -----NLQYYEISAKSNY----------NFEKPFLYLARKL 171 (199)
Q Consensus 146 -----~~~~~~~s~~~~~----------~v~~~~~~i~~~~ 171 (199)
.++++.+|+++|. ++..+++.|.+.+
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3678999999875 3455555555543
No 243
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=6.5e-16 Score=111.36 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeEEEee--EEEEec--------CcEEEEEEEeCC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHP--LDFFTN--------CGKIRFYCWDTA 70 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~--~~~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~l~D~~ 70 (199)
+|+++|..++|||||+.+|+...- ... .....|.+... ....+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999874321 100 00112222111 112222 347899999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
|+..|......+++.+|++++|+|++++...+....+.. ... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence 999999888999999999999999998765543222222 222 368999999999975
No 244
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.8e-16 Score=103.83 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=114.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.-|++++|-.|+|||||++.|...+. ....||...+.....+ .++.++-+|.+|+..-+..+..++..+++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 3556999999999999999997554433 3445555544444444 6789999999999888889999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH------HHHHHcC-----------CcEEE
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYE 151 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~~-----------~~~~~ 151 (199)
+.+|+-|.+.|++...-+..+.... .+.|+++.+||+|.+.....++.. ..+...+ ...+.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 9999999999998887666554432 689999999999998755333221 2222111 23677
Q ss_pred eccCCCCChHHHHHHHHHH
Q 029077 152 ISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~ 170 (199)
||...+.+--+.|.|+...
T Consensus 173 csi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEccCccceeeeehhhh
Confidence 8888888877777776543
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=2.5e-15 Score=125.23 Aligned_cols=118 Identities=21% Similarity=0.242 Sum_probs=83.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC--------C-----Cccc---cceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------E-----KKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~--------~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
.+..+|+|+|..|+|||||+++|+...- . ..+. ...+.+.......+......+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3567999999999999999999874211 0 0000 0123233322233344578999999999988
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
+......+++.+|++++|+|+++....+....|. .+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence 8888888899999999999999876555444442 2322 3789999999999764
No 246
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.7e-15 Score=113.75 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=109.3
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhc--CCCC---------------------------CccccceeEEEeeEEEEecC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNC 59 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 59 (199)
..+++++++++|+..+|||||+-+|+. +..+ ....+..|.+.......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 457889999999999999999998774 1111 11123456666666667777
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-cc
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ 133 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~ 133 (199)
..+.+++.|+||+..|...+..-+.++|+.|+|+|+.+.+. | ....+-+..+.....-..+|+++||+|+.+ .+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 78899999999999999999889999999999999998742 1 122233334444444566788889999976 11
Q ss_pred -----ccHHHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077 134 -----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK 162 (199)
Q Consensus 134 -----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 162 (199)
+..+...+.+..| ++|+++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1122223443433 5699999999999865
No 247
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=8.1e-15 Score=115.86 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=104.1
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcC-----CC-C--------CccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EF-E--------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~-----~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
+....++++|+++|..++|||||+++|... .. . .......|.+.......+...+..+.++||||+
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 345678899999999999999999997521 10 0 011123556666656666666778999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccHH-----HHHHHHHc-
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK- 145 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~~-----~~~~~~~~- 145 (199)
..|.......+..+|++++|+|+++...-+. ...+..+.. .++| ++++.||+|+.+.....+ ..++....
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8876666666678999999999987532221 222222222 2678 467899999975222111 11222221
Q ss_pred ----CCcEEEeccC---CCCC-------hHHHHHHHHHHHh
Q 029077 146 ----NLQYYEISAK---SNYN-------FEKPFLYLARKLA 172 (199)
Q Consensus 146 ----~~~~~~~s~~---~~~~-------v~~~~~~i~~~~~ 172 (199)
.++++.+|+. +|.| +.++++.+.+.+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3568888876 4444 5677777766554
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=8.7e-15 Score=110.71 Aligned_cols=166 Identities=17% Similarity=0.274 Sum_probs=103.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC------CccccceeEEEeeEEEE---------------ecC-cEEEEEEEeCCCc-
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ- 72 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~l~D~~g~- 72 (199)
|+++|.++||||||+|+|...... ....|+.|......... .++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999998865532 12234444333211000 122 3478999999997
Q ss_pred ---ccccccccc---cccCCcEEEEEEeCCC---------------h-hhHh----cHHHH-HH----------------
Q 029077 73 ---EKFGGLRDG---YYIHGQCAIIMFDVTA---------------R-LTYK----NVPTW-HR---------------- 109 (199)
Q Consensus 73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~----~~~~~-~~---------------- 109 (199)
+.+..+... .++++|++++|+|+.. + +.++ ++..| ..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334333333 4899999999999973 1 0111 11111 00
Q ss_pred ----------HHH--------------h----------------------hcCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 029077 110 ----------DLC--------------R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR 143 (199)
Q Consensus 110 ----------~l~--------------~----------------------~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~ 143 (199)
.+. . ....+|+|+++||.|+.+.....+... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~-~~ 239 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR-LK 239 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH-hh
Confidence 000 0 012469999999999754322222111 22
Q ss_pred HcCCcEEEeccCCCCChHHHHH-HHHHHHhCCCCCceecC
Q 029077 144 KKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFVES 182 (199)
Q Consensus 144 ~~~~~~~~~s~~~~~~v~~~~~-~i~~~~~~~~~~~~~~~ 182 (199)
.....++.+||+.+.++.++.+ .+.+.+.+.+.+....+
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~~ 279 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDE 279 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceeccc
Confidence 2345799999999999999998 69999998887766654
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=4.6e-15 Score=122.51 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=96.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCC--CCc-----------c------------------ccceeEEEeeEEEEe
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK-----------Y------------------EPTIGVEVHPLDFFT 57 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~ 57 (199)
...+.++|+++|.+++|||||+++|+...- ... . ....|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 346678999999999999999999874221 100 0 001233333333344
Q ss_pred cCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC--cccc
Q 029077 58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVK 135 (199)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~--~~~~ 135 (199)
...+..+.++||||++.+.......+..+|++++|+|++++..-+....+. +.......++++++||+|+.+ ....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHH
Confidence 455668889999999887665556678999999999998654322222211 122223467889999999864 1111
Q ss_pred H----HHHHHHHHcC---CcEEEeccCCCCChHH
Q 029077 136 A----KQVTFHRKKN---LQYYEISAKSNYNFEK 162 (199)
Q Consensus 136 ~----~~~~~~~~~~---~~~~~~s~~~~~~v~~ 162 (199)
. +...+.+..+ .+++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 1123334444 3589999999999874
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=6e-15 Score=116.76 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=99.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (199)
+.+.++|+++|+.++|||||+.+|+. +.... ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46779999999999999999999874 11110 01122345544444555667
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H---hcHHHHHHHHHhhcCCCc-EEEEEeCCCCCC--
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-- 131 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~-- 131 (199)
...+.++|+||+.+|.......+..+|++++|+|++++.- + ....+....+.. .++| +|+++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence 7899999999999988888888899999999999987531 1 111121222222 2655 678999999532
Q ss_pred --cc----ccHHHHHHHHHc-----CCcEEEeccCCCCChHH
Q 029077 132 --RQ----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (199)
Q Consensus 132 --~~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 162 (199)
.. ...+...+.... .++++.+|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 112222333333 35699999999999853
No 251
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.63 E-value=4.3e-15 Score=119.44 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=83.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc--CCCC--C----------------ccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE--K----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (199)
.+..+|+++|+.++|||||.++|+. +... + ......|.+.......+..+.+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999863 1110 0 001123444444444555667899999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
|+..|......+++.+|++|+|+|+++..... ...+...... .++|+++++||+|+....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccC
Confidence 99888776777789999999999998753222 2222222222 489999999999987644
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=3.2e-15 Score=97.65 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---------cccccccC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~ 85 (199)
||+|+|.+|+|||||+|.|+.... .......+.+.......+......+.++||||...... .....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 699999999999999999885432 11111222222221111122345557999999643211 12223478
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeC
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K 126 (199)
+|++++|+|..+... +.....+..+. .+.|+++|.||
T Consensus 80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 999999999877321 22333444442 58999999998
No 253
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.9e-15 Score=106.91 Aligned_cols=171 Identities=13% Similarity=0.227 Sum_probs=112.0
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-------ccccc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLR 79 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~ 79 (199)
+-.+..+++|+++|..|+|||||+|.|+.+.......-..+.+-.. .....+..-.+.+||+||.+. ++..+
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHH
Confidence 4557789999999999999999999988654432221111111110 111122336789999999655 55667
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc---------cccHH-------HH----
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAK-------QV---- 139 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~---------~~~~~-------~~---- 139 (199)
..++...|.++++.++.|+.- ..-.+++..+....-+.++++++|..|.... ..... ..
T Consensus 112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 778889999999999988642 2222344455555556899999999996432 11111 11
Q ss_pred HHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCCCcee
Q 029077 140 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180 (199)
Q Consensus 140 ~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~ 180 (199)
+++++ -.+++..+...+.|++++...+++++....+....
T Consensus 191 ~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a 230 (296)
T COG3596 191 RLFQE-VKPVVAVSGRLPWGLKELVRALITALPVEARSPLA 230 (296)
T ss_pred HHHhh-cCCeEEeccccCccHHHHHHHHHHhCcccccchhh
Confidence 12222 34678888899999999999999999865554443
No 254
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.62 E-value=3.3e-15 Score=103.40 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=71.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccc---ccCCcEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQCA 89 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~ 89 (199)
.-.|+++|+.|||||+|+.+|..+.......+.. ....... -......+.++|+||+.+.+...... ..++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--NNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS--EEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--CCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4578999999999999999998875544333331 1111111 12234578999999999987755443 7889999
Q ss_pred EEEEeCCC-hhhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCCc
Q 029077 90 IIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~~ 132 (199)
|+|+|++. ........+++..+... ....|++++.||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 34445555444433322 246899999999998653
No 255
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=2.5e-14 Score=110.04 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CC-----------CccccceeEEEeeEEE----Ee-cCcEEEEEEEeCCCcccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGE--FE-----------KKYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~--~~-----------~~~~~~~~~~~~~~~~----~~-~~~~~~~~l~D~~g~~~~ 75 (199)
-+.+++-.-.-|||||..|++... .. -......|.+.+.-.+ .. ++.++.+.++||||+-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 367888999999999999987421 10 1223344555443322 22 457899999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEe
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI 152 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (199)
.......+..|.+.++|+|++.+-.-+.+...+..+.+ +.-++-|.||+|++......-..++..-.|+ ..+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 88888888999999999999988777777777666654 7888999999999986655544444444454 48899
Q ss_pred ccCCCCChHHHHHHHHHHHhCCC
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
||++|.|++++++.|.+.+....
T Consensus 167 SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred ecccCCCHHHHHHHHHhhCCCCC
Confidence 99999999999999999886433
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=1.1e-14 Score=117.11 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=83.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------ccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (199)
.+..+|+++|..++|||||+++|+. +.... ......|.+.......++..++.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999763 11100 011123455555555666778999999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
|+..|.......+..+|++|+|+|+++.... ....+...... .++|+++++||+|+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 9988777667778999999999999875211 12223332222 47899999999998653
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.7e-15 Score=113.56 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=112.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccc--------ccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY 82 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~--------~~~ 82 (199)
.-++|+++|+||+|||||+|.| .+.......|-.|+++..+...++-..+.+.+.||+|..+ ..... ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL-~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNAL-SREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHH-hcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 3489999999999999999985 4556677888999999999999988899999999999655 22211 223
Q ss_pred ccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhc-------CCCcEEEEEeCCCCCCc--cccHHHHHHHH--Hc-CCc
Q 029077 83 YIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNR--QVKAKQVTFHR--KK-NLQ 148 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~-------~~~p~iiv~~K~D~~~~--~~~~~~~~~~~--~~-~~~ 148 (199)
+..+|++++|+|+.... +-..+...+......+ .+.|++++.||.|+... ........+.. .. .++
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~ 425 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP 425 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence 67899999999994432 2222223333322211 24789999999998764 21111111111 11 133
Q ss_pred -EEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 149 -YYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 149 -~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
..++|+.+++|++++...+.+.+....
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 455999999999999999988776443
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=6e-14 Score=103.35 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYY 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~ 83 (199)
.-.-+++++|.|++|||||++.|.+.. .+......++..++...++++...+++.|+||.-.. ........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 345689999999999999999966433 222333445666666677788899999999984321 12345568
Q ss_pred cCCcEEEEEEeCCChhh-HhcHHHHHHHH-----------------------------------------Hhh-------
Q 029077 84 IHGQCAIIMFDVTARLT-YKNVPTWHRDL-----------------------------------------CRV------- 114 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~~------- 114 (199)
++||.+++|+|+..... .+.+...+... .++
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999986543 22222211111 000
Q ss_pred ------------------cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 115 ------------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 115 ------------------~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
.-=+|.+.|.||.|+...+. ...+.+.. .++.+||..+.|++++.+.|.+.+-
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~---~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE---LERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH---HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 00138899999999987222 12222222 8899999999999999999998874
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.59 E-value=1.9e-14 Score=119.89 Aligned_cols=119 Identities=20% Similarity=0.200 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc--CCCC--Ccc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (199)
+.-+|+++|..++|||||+++|+. +... ... ....|++.......+...+..+.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 445999999999999999999863 1110 000 012344555444555556789999999999888
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
.......++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+....
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCCCC
Confidence 77777888999999999999886544433222 22322 378999999999998643
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=4.1e-14 Score=117.87 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCC--Ccc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
.+..+|+++|..++|||||+++|+.. ... ... ....|++.......+...+..+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 35678999999999999999998632 110 000 01334444444444444678899999999887
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
+.......+..+|++++|+|+.++...+... ....+.. .++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 7777777789999999999998764333222 2222222 3789999999999864
No 261
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.57 E-value=6e-14 Score=110.88 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC---CCcccc----ceeEEEeeE----------EE-EecC-------------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYEP----TIGVEVHPL----------DF-FTNC------------- 59 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~----~~~~~~~~~----------~~-~~~~------------- 59 (199)
...++|+++|.-..|||||+..|..-.. ..+... ..|...... .+ ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 5678999999999999999999764221 111100 112111100 00 0000
Q ss_pred ---cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh-hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 60 ---GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
-...+.++|+||++.|.......+..+|++++|+|+.+. ...+....+ .+.....-.++++|.||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl--~i~~~lgi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL--AAVEIMKLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH--HHHHHcCCCcEEEEEecccccCHHHH
Confidence 024689999999998877777778899999999999874 222222222 12222234568899999999753222
Q ss_pred HHH----HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 136 AKQ----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 136 ~~~----~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
.+. ..+.+. ...+++++||++|.|++++++.|.+.+.
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 221 222222 3578999999999999999999887554
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.55 E-value=2.6e-14 Score=90.82 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI 90 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i 90 (199)
|++++|..|||||||.+.+.+.. ..+..|..+++... -.+||||.-- +..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~--~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGND--TLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcch--hhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 79999999999999999855322 22222332221111 1368888321 1111223357899999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
+|..++++++--. +.+... ..+|+|-|++|.|+.+.........+..+-|. ++|++|+.+..|+++++..|..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred eeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9999998865221 111111 25669999999999975544444555555554 5999999999999999987764
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.53 E-value=5.5e-13 Score=103.85 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH-HHHHHHHHHhCCCCCceecC
Q 029077 117 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVES 182 (199)
Q Consensus 117 ~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~-~~~~i~~~~~~~~~~~~~~~ 182 (199)
.+|+++|+||.|....... ...+.......++.+||..+.++.+ +.+.+.+.+...+.+...|.
T Consensus 217 ~KPvI~VlNK~D~~~~~~~--l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ 281 (396)
T PRK09602 217 SKPMVIAANKADLPPAEEN--IERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE 281 (396)
T ss_pred CCCEEEEEEchhcccchHH--HHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence 4799999999997532211 1122222345689999999999999 88888898888886654443
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=101.80 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccc----c---ccccccC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGG----L---RDGYYIH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~----~---~~~~~~~ 85 (199)
-|.++|-|++|||||++.+..... ...|.- +|..+....+. ...-.|.+-|+||.-+..+ + ....+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF---TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF---TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCcc---ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 478999999999999998654322 122211 12222111111 2345688999999543211 1 1223578
Q ss_pred CcEEEEEEeCCChhh---HhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHH--HHHHHHHcCCcE-EEeccCC
Q 029077 86 GQCAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQY-YEISAKS 156 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~--~~~~~~~~~~~~-~~~s~~~ 156 (199)
+.++++|+|++..+. .+.......++..+. .++|.++|.||+|+.......+ ...+.+..+... +.+|+.+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 999999999985542 445555566666654 5799999999999654332222 234444444432 2299999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 029077 157 NYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~~~~ 175 (199)
+.|++++...+.+.+....
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999998887664
No 265
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=8.3e-13 Score=103.41 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC---cEEEEEEEeCCCcccccccccccccCCcE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
+..-|+++|+-.-|||||+..+-..+.... ..-|.+-.---+.+.. ....+.++||||++.|-.++.--..-+|.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 445689999999999999998554333211 1222232222222221 34578999999999999888888889999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHHH------HcC--CcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKN--LQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~--~~~~~~s~~~~~~ 159 (199)
+|+|++++|.---+. ...+.+. ..+.|+++..||+|..+........++.+ .++ ..++++||++|.|
T Consensus 82 aILVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 82 AILVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999998643222 2222222 24999999999999986443332222221 121 4589999999999
Q ss_pred hHHHHHHHHHHH
Q 029077 160 FEKPFLYLARKL 171 (199)
Q Consensus 160 v~~~~~~i~~~~ 171 (199)
+.+++..++-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999988776443
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=2.2e-13 Score=113.58 Aligned_cols=119 Identities=20% Similarity=0.197 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc--CCCCC--cc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (199)
+..+|+++|..++|||||+++|+. +.... .. ....|.+.......+...+..+.++||||+..+
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 456999999999999999999873 21110 01 023445555444445556789999999998877
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
.......+..+|++++|+|+......+....|. .+.. .++|.++++||+|+....
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~--~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK--YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH--cCCCEEEEEECCCCCCCC
Confidence 666666788999999999998764444333222 2222 278999999999998644
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.50 E-value=2.7e-13 Score=112.96 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=74.5
Q ss_pred EcCCCCCHHHHHHHHhcCCC--CC--c------------cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccc
Q 029077 19 VGDGGTGKTTFVKRHLTGEF--EK--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (199)
Q Consensus 19 iG~~~~GKStli~~l~~~~~--~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (199)
+|+.++|||||+++|+...- .. . .....|.+.......+...++.+.+|||||+..+......+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 59999999999999853211 00 0 00112333333333444467899999999998776677778
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
+..+|++++|+|+++.........|. .+.. .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCCC
Confidence 89999999999998865544333332 2222 3789999999999753
No 268
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2e-13 Score=94.87 Aligned_cols=152 Identities=17% Similarity=0.271 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc---CCcEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI 90 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i 90 (199)
-.|+++|+.+||||+|+-+|..+.+.+.+.+.. +-...+..+...+.+.|.||+.+.+.....++. .+-+++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie-----pn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE-----PNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeec-----cceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 478999999999999999988775544432221 122222223344889999999998888777776 789999
Q ss_pred EEEeCCC-hhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCccccH-------HHH-------------------
Q 029077 91 IMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA-------KQV------------------- 139 (199)
Q Consensus 91 ~v~d~~~-~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~~~~~-------~~~------------------- 139 (199)
||+|+.. ........+++..+...+ ...|++++.||.|+--....+ .++
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999753 333444444444433332 357899999999974321110 000
Q ss_pred ------------HHH--HHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 140 ------------TFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 140 ------------~~~--~~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
.|. ....+.+.++|++++ +++++-+||.+++
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000 011234788899888 8999999988753
No 269
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8.9e-13 Score=103.78 Aligned_cols=158 Identities=22% Similarity=0.234 Sum_probs=113.5
Q ss_pred CCCccCCCceEEEEEcCCCCCHHHHHHHHhc--------------------CC--C-------CCccccceeEEEeeEEE
Q 029077 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GE--F-------EKKYEPTIGVEVHPLDF 55 (199)
Q Consensus 5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~--------------------~~--~-------~~~~~~~~~~~~~~~~~ 55 (199)
.++......++.+++|...+|||||+.+++. |. + .....+..|++......
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 3556667889999999999999999998774 11 1 12234456778888888
Q ss_pred EecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 56 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
+++.....+++.|+||+..|..+...-..++|+.++|+|++..+ .|+. -.+-+..+.+...-..+++++||+|+.
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 88888899999999999999999999999999999999998653 2321 112333444444455678888999997
Q ss_pred C-ccccH-----HHHHHH-HHcC-----CcEEEeccCCCCChHH
Q 029077 131 N-RQVKA-----KQVTFH-RKKN-----LQYYEISAKSNYNFEK 162 (199)
Q Consensus 131 ~-~~~~~-----~~~~~~-~~~~-----~~~~~~s~~~~~~v~~ 162 (199)
+ .+... ....+. +..| +.+++||+.+|.|+-.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 5 22222 222344 3333 4699999999999843
No 270
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.47 E-value=3.1e-13 Score=113.00 Aligned_cols=118 Identities=23% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC---------------CCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
....+|+++|+.++|||||+++|+... +... ...|...........+++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345799999999999999999987421 1000 0112222222223345667899999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
..|.......++.+|++++|+|+.+....+....|.. ... .+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhccc
Confidence 9888777888999999999999987533332222222 212 3678889999999853
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.46 E-value=3e-12 Score=102.95 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=67.4
Q ss_pred EEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--
Q 029077 62 IRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-- 134 (199)
Q Consensus 62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-- 134 (199)
..+.+.||||.... .......+..+|++++|+|.+...+..+ ......+.....+.|+++|+||+|..++..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 45678899996542 1123446889999999999987533222 123333433322369999999999864322
Q ss_pred cHHHHHHH----HHcC---CcEEEeccCCCCChHHHHHHHHH
Q 029077 135 KAKQVTFH----RKKN---LQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 135 ~~~~~~~~----~~~~---~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
......+. .... ..+|++||+.|.|+++++..|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 12222221 1112 25999999999999997776665
No 272
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-13 Score=105.91 Aligned_cols=168 Identities=14% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----cccc
Q 029077 3 LPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGL 78 (199)
Q Consensus 3 ~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~ 78 (199)
+..-++.+++.-.++++|.+++|||||+|.+. ....+..|...++..-....++.+-..|++.||||.-. .+..
T Consensus 158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vt--radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HhcCCCCCCCcCeEEEecCCCCCcHhhccccc--ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 34456678888999999999999999999644 23334444444444444555566778899999999432 1111
Q ss_pred c-----cccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHH---HH-HHHHHcC
Q 029077 79 R-----DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK---QV-TFHRKKN 146 (199)
Q Consensus 79 ~-----~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~---~~-~~~~~~~ 146 (199)
. .+..+-..+++++.|++... |...-..++..+.-.+.+.|+|+|.||+|....+ ..++ .. .+....+
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence 1 22234456788899988544 4555556777777777899999999999986532 2222 22 3444455
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
++++++|+.+.+|+.++....+.++.
T Consensus 316 v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 316 VKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred ceEEEecccchhceeeHHHHHHHHHH
Confidence 89999999999999888877776664
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=9e-13 Score=94.92 Aligned_cols=169 Identities=10% Similarity=0.056 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------c---cc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D---GY 82 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~---~~ 82 (199)
++|+++|.+||||||++|.+++...........+++..............+.++||||........ . ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999988665433322112222222222222245778999999953321110 1 12
Q ss_pred ccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---------HHHHHHHHHcCCcEEEe
Q 029077 83 YIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYYEI 152 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---------~~~~~~~~~~~~~~~~~ 152 (199)
....+++++|+.+..... -.....++..+....--..+++|+|..|....... .....+.+..+-.|...
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f 160 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVF 160 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEE
Confidence 346899999999882211 11122233332221112468888888876543221 11234566677777777
Q ss_pred ccC------CCCChHHHHHHHHHHHhCCCCCceecC
Q 029077 153 SAK------SNYNFEKPFLYLARKLAGDPNLHFVES 182 (199)
Q Consensus 153 s~~------~~~~v~~~~~~i~~~~~~~~~~~~~~~ 182 (199)
+.. ....+.+++..+-+.+.++....+..+
T Consensus 161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~ 196 (212)
T PF04548_consen 161 NNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE 196 (212)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred eccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 666 335789999999998888876655533
No 274
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.9e-12 Score=99.69 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=104.9
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
..++.--|-++|...-|||||+..|-....... ..-|++-. .+.+.+. ..-.+++.||||+..|...+.--..-.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccc
Confidence 446667889999999999999998554332211 12222211 1222333 336889999999999999888888889
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHH------HHc--CCcEEEeccCCC
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKK--NLQYYEISAKSN 157 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~------~~~--~~~~~~~s~~~~ 157 (199)
|.+++|+.++|+---+ ....|... ..++|+++..||+|.++.....-..++. ..+ ..+++++||++|
T Consensus 226 DIvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 226 DIVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred cEEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 9999999999864322 22223222 2589999999999988644333222222 222 256999999999
Q ss_pred CChHHHHHHHHHH
Q 029077 158 YNFEKPFLYLARK 170 (199)
Q Consensus 158 ~~v~~~~~~i~~~ 170 (199)
.|++.+-+++.-.
T Consensus 302 ~nl~~L~eaill~ 314 (683)
T KOG1145|consen 302 ENLDLLEEAILLL 314 (683)
T ss_pred CChHHHHHHHHHH
Confidence 9999987776543
No 275
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=1.4e-13 Score=90.69 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 92 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (199)
+||+++|..|+|||+|+.++..+.+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999987666654333 3333 222334456778999999
Q ss_pred EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
|+.++..++..+ |...+.... .+.|.++++||.|+.+..... ...+..++++|+++|.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~------~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVA------TEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCC------HHHHHHHHHHhCCCcchhh
Confidence 999999988755 776665443 468889999999985432111 1122346678889998874
No 276
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.43 E-value=5.2e-12 Score=93.29 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=112.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCccccccccccccc---
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYI--- 84 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~--- 84 (199)
-+.--+|+|+|+.|+|||||+.+|- +.. .+.+..|..+....+.-+++ -.++.+|-..|.-....+....+.
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klq-g~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats 125 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQ-GSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS 125 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhh-ccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence 3455689999999999999999954 332 44456666666666654433 367888988775443333333222
Q ss_pred -CCcEEEEEEeCCChhh-HhcHHHHHHHHHhhc-----------------------------------------------
Q 029077 85 -HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVC----------------------------------------------- 115 (199)
Q Consensus 85 -~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~----------------------------------------------- 115 (199)
.--.+|++.|++++.. ++.+.+|..-+.+..
T Consensus 126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d 205 (473)
T KOG3905|consen 126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD 205 (473)
T ss_pred ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence 2357888999999844 445666665443110
Q ss_pred ---------------CCCcEEEEEeCCCCCC-----cc--------ccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 116 ---------------ENIPIVLCGNKVDVKN-----RQ--------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 116 ---------------~~~p~iiv~~K~D~~~-----~~--------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
-.+|+++|.||+|... .+ +......||..+|...+++|++...|++-++.+|
T Consensus 206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence 0248999999999721 11 2233457899999999999999999999999999
Q ss_pred HHHHhCCC
Q 029077 168 ARKLAGDP 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.++.-+
T Consensus 286 vhr~yG~~ 293 (473)
T KOG3905|consen 286 VHRSYGFP 293 (473)
T ss_pred HHHhcCcc
Confidence 99887544
No 277
>PRK13768 GTPase; Provisional
Probab=99.42 E-value=1.5e-12 Score=96.11 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=70.2
Q ss_pred EEEEEeCCCcccc---ccccccc---ccC--CcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 63 RFYCWDTAGQEKF---GGLRDGY---YIH--GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 63 ~~~l~D~~g~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
.+.+||+||+.+. +.....+ +.. .+++++++|++....... ...|+........+.|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6889999997553 2222222 222 899999999975432222 11223222222248999999999998654
Q ss_pred cccHHHHH----------------------------HHHHcC--CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 133 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
....+... ..+..+ .+++++|++++.|+++++++|.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 32221111 112223 478999999999999999999988754
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.5e-12 Score=95.12 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=106.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC------------C-------------------ccccceeEEEeeEEEEec
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE------------K-------------------KYEPTIGVEVHPLDFFTN 58 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~ 58 (199)
+...+|.+-+|+..-|||||+-||+..... . ......|++...-...+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 356789999999999999999998742110 0 001123444444444556
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc------
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR------ 132 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~------ 132 (199)
....+|.+-||||++.|-.++..-...||..|+++|+..+- .+-.+-+..+.....-+.+++.+||+|+.+-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 66788999999999998888877888999999999996542 2223333444444455778888999999872
Q ss_pred cccHHHHHHHHHcCC---cEEEeccCCCCChH
Q 029077 133 QVKAKQVTFHRKKNL---QYYEISAKSNYNFE 161 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~---~~~~~s~~~~~~v~ 161 (199)
.+..+-..++..+++ .++++||+.|.|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 233344578888875 49999999999983
No 279
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.41 E-value=1.8e-11 Score=96.52 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=115.4
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
..+.+.+++.++|+.++|||.+++.++++.+...+..+....+..-.....+....+.+.|.+-. ........- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 44577889999999999999999999988887655555543333333333455566677776643 222222222 6799
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHcCCc-EEEeccCCCCChHHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF 164 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~ 164 (199)
++.++||.+++.+|..+...+..-... .+.|+++|++|.|+.+.. .....-+++..++++ ....|.+.... .++|
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf 575 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF 575 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence 999999999999998877665544433 689999999999998743 333337788888875 55566664223 8899
Q ss_pred HHHHHHHhCCC
Q 029077 165 LYLARKLAGDP 175 (199)
Q Consensus 165 ~~i~~~~~~~~ 175 (199)
..|+.+....+
T Consensus 576 ~kL~~~A~~Ph 586 (625)
T KOG1707|consen 576 IKLATMAQYPH 586 (625)
T ss_pred HHHHHhhhCCC
Confidence 99988877655
No 280
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.41 E-value=4.1e-12 Score=94.82 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=69.3
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-------c
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------D 80 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~ 80 (199)
..+.+.++|+++|.+|+||||++|++++..... .....+.+..............+.++||||........ .
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 345788999999999999999999988554211 11111111111111122245789999999976532111 1
Q ss_pred ccc--cCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077 81 GYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (199)
Q Consensus 81 ~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~---~~p~iiv~~K~D~~ 130 (199)
.++ ...|++++|..++... +... ...+..+...+. -.+.|+++|+.|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 111 2589999996654321 1111 122333333221 35789999999964
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.40 E-value=4.5e-12 Score=93.00 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=69.4
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---c------
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L------ 78 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~------ 78 (199)
+.....++|+|+|.+|||||||+|++++...... ....+.+.....+........+.++||||...... .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 3456779999999999999999999876543211 11111122222222222346789999999664311 1
Q ss_pred -cccccc--CCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077 79 -RDGYYI--HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (199)
Q Consensus 79 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~ 130 (199)
...++. ..+++++|..++... ... -...+..+...+. -.++++|.||+|..
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 111222 567888887665432 111 1123333333222 25799999999974
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=1.4e-11 Score=87.63 Aligned_cols=99 Identities=11% Similarity=0.079 Sum_probs=60.7
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE--EEEEeCCCCCCc--cccHH
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNR--QVKAK 137 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~--iiv~~K~D~~~~--~~~~~ 137 (199)
....++++.|..-..... . .-++.+|.|+|+.+..+... .+. .++.. ++++||.|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence 445566777632111111 1 12577999999987665321 111 13333 788999999852 11111
Q ss_pred HHHHHH--HcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 138 ~~~~~~--~~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
..+..+ ..+.+++++|+++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 122222 34678999999999999999999987653
No 283
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=1.4e-11 Score=95.06 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=115.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc--CCCC------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
.--+|+++-...-|||||+..|+. +.|. .......|++.-.++.-+..+++.+++.||||+..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 445899999999999999999874 2221 22334567777777766777889999999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---ccHHHHHHHH-------HcCC
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFHR-------KKNL 147 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~~~~~~~~~~-------~~~~ 147 (199)
...-.+.=.|++++++|+.++.--+.--.....+. .+.+-|+|+||+|.++.. +..+..++.- ++.+
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999998753332222222222 267778889999998743 2334444332 3567
Q ss_pred cEEEeccCCCC----------ChHHHHHHHHHHHhCCC
Q 029077 148 QYYEISAKSNY----------NFEKPFLYLARKLAGDP 175 (199)
Q Consensus 148 ~~~~~s~~~~~----------~v~~~~~~i~~~~~~~~ 175 (199)
++++.|+..|. ++..+|+.|.+.+....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 88998988764 35678888888776433
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=2.7e-12 Score=94.26 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=77.3
Q ss_pred ccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHHHHHHcCCcEE
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYY 150 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~~~~~~~~~~~ 150 (199)
++++.+.+.+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||.|+.+... ..+........++.++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 567788888999999999999999877 88889999876654 4899999999999965332 2233444556788999
Q ss_pred EeccCCCCChHHHHHHHHH
Q 029077 151 EISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~i~~ 169 (199)
++||++|.|++++|..+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999987764
No 285
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.37 E-value=1.1e-11 Score=94.29 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=76.4
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
.+..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+... ..++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 467789999999999999999999999999999999863 2233322333333222 2579999999999
Q ss_pred CCCCcc------------------ccHHHHHH-----HH-----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 128 DVKNRQ------------------VKAKQVTF-----HR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 128 D~~~~~------------------~~~~~~~~-----~~-----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|+-.+. .......+ .. ...+..+.++|.+-.+++.+|..+...+..
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~ 312 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ 312 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence 953211 11111111 11 123445677888888888888888777654
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=3.2e-12 Score=97.77 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=78.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeE---EEeeEEEEecCcEEEEEEEeCCCcccccccccc-----
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG----- 81 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~----- 81 (199)
+..+++|+|+|.+|+|||||+|.|.+-..........|+ +.....+. ......+.+||.||..........
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 456799999999999999999997542222221122221 11222221 123346899999996442222222
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC--CCc------ccc-----HHH----HHHHHH
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KNR------QVK-----AKQ----VTFHRK 144 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~--~~~------~~~-----~~~----~~~~~~ 144 (199)
-+...|.+|++.+-.-.+.-.. ....+.+. ++|+.+|-||.|. .+. ... ++. .+-.+.
T Consensus 111 ~~~~yD~fiii~s~rf~~ndv~---La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTENDVQ---LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp TGGG-SEEEEEESSS--HHHHH---HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccccCEEEEEeCCCCchhhHH---HHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 3667898888766443222111 22333333 8999999999995 111 111 111 122222
Q ss_pred cCC---cEEEeccCC--CCChHHHHHHHHHHHhCCC
Q 029077 145 KNL---QYYEISAKS--NYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 145 ~~~---~~~~~s~~~--~~~v~~~~~~i~~~~~~~~ 175 (199)
.++ ++|.+|..+ ..++..+.+.|.+-+....
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 233 488888864 3567888888877765433
No 287
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=2e-11 Score=92.66 Aligned_cols=102 Identities=11% Similarity=0.008 Sum_probs=65.4
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--- 137 (199)
.+.+.++||+|..... ......+|.++++.+...+...+.... .+. ...-++|+||+|+........
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~----E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIM----ELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhh----hhhheEEeehhcccchhHHHHHHH
Confidence 5788999999965322 224667999999976544444433332 111 222379999999875432111
Q ss_pred -HHHHHHH-------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 138 -QVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 138 -~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
....... +..+++.+|+.+|.|++++++.|.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1111111 2257999999999999999999998765
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=3.9e-12 Score=108.03 Aligned_cols=118 Identities=15% Similarity=0.195 Sum_probs=81.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC--C---------cc---ccceeEEEee--EEEEe--------------cC
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KY---EPTIGVEVHP--LDFFT--------------NC 59 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--~---------~~---~~~~~~~~~~--~~~~~--------------~~ 59 (199)
..+.-+|+|+|+.++|||||+.+|+...-. . .+ ....|.+... ....+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345669999999999999999998743210 0 00 0011222221 11111 22
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
.++.++++||||+..|.......++.+|++|+|+|+.++-..+....|.... . .++|.++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H--CCCCEEEEEECCccc
Confidence 4678899999999998888888889999999999999875544444443322 2 388999999999987
No 289
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.34 E-value=5.4e-11 Score=94.18 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=113.9
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC--cEEEEEEEeCCCccccccccccccc--
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYI-- 84 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~-- 84 (199)
.....-.|+|+|..++|||||+.+|.. . ..+.++.|.++....+.-++ ...++.+|-..|...+..+....+.
T Consensus 21 ~~~~~k~vlvlG~~~~GKttli~~L~~-~--e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 21 KLPSEKSVLVLGDKGSGKTTLIARLQG-I--EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred cCCCCceEEEEeCCCCchHHHHHHhhc-c--CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 345567999999999999999999643 2 23456777777777664432 2357899999886666565544443
Q ss_pred --CCcEEEEEEeCCChhhHh-cHHHHHHHHH-------------------------hhc---------------------
Q 029077 85 --HGQCAIIMFDVTARLTYK-NVPTWHRDLC-------------------------RVC--------------------- 115 (199)
Q Consensus 85 --~~d~~i~v~d~~~~~s~~-~~~~~~~~l~-------------------------~~~--------------------- 115 (199)
.--.+++|.|.+.+..+. .+..|+..+. ++.
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 235778999999886542 3444443321 000
Q ss_pred -----------------CCCcEEEEEeCCCCCC----cc---------ccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 116 -----------------ENIPIVLCGNKVDVKN----RQ---------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 116 -----------------~~~p~iiv~~K~D~~~----~~---------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
-.+|++||++|.|.-. .. +.+..+.+|..+|+..+++|++...+++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 0259999999999632 11 11224478889999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 029077 166 YLARKLAGDPN 176 (199)
Q Consensus 166 ~i~~~~~~~~~ 176 (199)
+|.+.+...+.
T Consensus 258 yi~h~l~~~~f 268 (472)
T PF05783_consen 258 YILHRLYGFPF 268 (472)
T ss_pred HHHHHhccCCC
Confidence 99999876553
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.33 E-value=4.4e-11 Score=86.90 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=82.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+...|+++|.+|+|||||++.+.............|. ... .......+.++|+||.- .......+.+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence 456688999999999999999987643222111112221 111 12245678899999853 2223346789999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCCCCccc-cHH---HH-H-HHH--HcCCcEEEeccCCCCCh
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK---QV-T-FHR--KKNLQYYEISAKSNYNF 160 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~~~~~~-~~~---~~-~-~~~--~~~~~~~~~s~~~~~~v 160 (199)
++++|++....... ..+...+... +.|. ++|+||+|+.+... ..+ .+ . +.. ..+.+++.+||++...+
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 99999876433221 1223333222 5674 55999999863221 111 11 1 221 13467999999988655
No 291
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.33 E-value=1.1e-11 Score=95.09 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=75.8
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
.+..+.+||.+|+...+..|..++.+++++|+|+|+++- ..+.+....+..+... ..+.|+++++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 456778999999999999999999999999999999863 1233333333333322 2579999999999
Q ss_pred CCCCcc-----------------ccHHHH-----HHHHH------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 128 DVKNRQ-----------------VKAKQV-----TFHRK------KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 128 D~~~~~-----------------~~~~~~-----~~~~~------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|+-.+. ...... .+... ..+..+.++|.+-.++..+|..+...+..
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 963211 011111 11111 12345667888888888888877776653
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.31 E-value=1.2e-11 Score=104.90 Aligned_cols=116 Identities=17% Similarity=0.204 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeEEEee--EEEEec--------CcEEEEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHP--LDFFTN--------CGKIRFYCW 67 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~--~~~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~l~ 67 (199)
+..+|+++|+.++|||||+++|+...- ... .....|.+... ...... ++++.+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345999999999999999999875211 000 00111222221 111121 236789999
Q ss_pred eCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
||||+..+.......++.+|++|+|+|+.++-..+....| ..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence 9999998877778888999999999999886544433333 22322 268999999999987
No 293
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.4e-12 Score=87.73 Aligned_cols=142 Identities=22% Similarity=0.331 Sum_probs=90.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-----cccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-----GLRDGY 82 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----~~~~~~ 82 (199)
..-||+++|.+|+|||++-..++. .+.. ....|..++-..+++- ++..+.+||++|++.+- ......
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~-ny~a~D~~rlg~tidveHsh~Rfl---Gnl~LnlwDcGgqe~fmen~~~~q~d~i 78 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFA-NYIARDTRRLGATIDVEHSHVRFL---GNLVLNLWDCGGQEEFMENYLSSQEDNI 78 (295)
T ss_pred ccceEEEeccCCCCccccchhhhh-hhhhhhhhccCCcceeeehhhhhh---hhheeehhccCCcHHHHHHHHhhcchhh
Confidence 346899999999999998765432 2211 1122333333333221 46788999999998532 234557
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHH---HHHHHHhhcCCCcEEEEEeCCCCCCccccHH--------HHHHHHHcCCcEEE
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYE 151 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--------~~~~~~~~~~~~~~ 151 (199)
+++.+++++|||+...+-..++.. .+..+.+..+...+.+..+|+|+........ ...+.+..++.++.
T Consensus 79 F~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~ 158 (295)
T KOG3886|consen 79 FRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFP 158 (295)
T ss_pred heeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccc
Confidence 899999999999987765444443 4455666677888888899999965332221 11233344566788
Q ss_pred eccCCC
Q 029077 152 ISAKSN 157 (199)
Q Consensus 152 ~s~~~~ 157 (199)
+|..+.
T Consensus 159 TsiwDe 164 (295)
T KOG3886|consen 159 TSIWDE 164 (295)
T ss_pred cchhhH
Confidence 877753
No 294
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=5.9e-11 Score=85.91 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCccc-ccccccc-----ccc--CCcEEEEEEeCCChh---hHhcH-HHHHHHHHhhcCCCcEEEEEeCCC
Q 029077 61 KIRFYCWDTAGQEK-FGGLRDG-----YYI--HGQCAIIMFDVTARL---TYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128 (199)
Q Consensus 61 ~~~~~l~D~~g~~~-~~~~~~~-----~~~--~~d~~i~v~d~~~~~---s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D 128 (199)
...+.++||||+-. |.+.... .+. ..-++++++|..... .|-.- -+.-..+.+ -+.|+|++.||.|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEeccc
Confidence 46688999999743 3222221 122 235666777754332 22211 111122222 4899999999999
Q ss_pred CCCccccHHHH------H-------------HHH---------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 129 VKNRQVKAKQV------T-------------FHR---------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 129 ~~~~~~~~~~~------~-------------~~~---------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+.+.....+.. + +.+ ..++....+|+.+|.|+++.|..+-..+.+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 98754432211 0 000 123567889999999999999988877743
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.27 E-value=2.5e-10 Score=87.80 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=96.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC----CCCC----------cccccee---EEEeeEE-------EEe-cCcEEEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEK----------KYEPTIG---VEVHPLD-------FFT-NCGKIRFY 65 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-------~~~-~~~~~~~~ 65 (199)
..++.|+|+|+.++|||||+|+|+.. .... -+.+..| ++..++. +.. ++-...+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34689999999999999999998865 2210 2233444 3333322 222 34567899
Q ss_pred EEeCCCccc--------ccc---c------------------cccccc-CCcEEEEEE-eCC----ChhhHhc-HHHHHH
Q 029077 66 CWDTAGQEK--------FGG---L------------------RDGYYI-HGQCAIIMF-DVT----ARLTYKN-VPTWHR 109 (199)
Q Consensus 66 l~D~~g~~~--------~~~---~------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~-~~~~~~ 109 (199)
++||+|... ... . .+..+. .++..|+|. |.+ .++.+.. -..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999998321 111 0 112233 788888887 553 1122322 235777
Q ss_pred HHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 110 DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 110 ~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
.+... ++|++++.|+.|-...........+...++.+++.+|+..- .-+++..-+.+.+.+-|
T Consensus 175 eLk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 175 ELKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEFP 237 (492)
T ss_pred HHHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence 77766 99999999999954333222233555667888777777532 23444444555555544
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.26 E-value=1.6e-10 Score=83.07 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--------c----cc----cceeEEEeeEEE----------------Eec
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------K----YE----PTIGVEVHPLDF----------------FTN 58 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~--------~----~~----~~~~~~~~~~~~----------------~~~ 58 (199)
.....|+++|+.|+|||||+++++...... . .. ...|........ ...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 346789999999999999999977431100 0 00 000100000000 000
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA 136 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~ 136 (199)
.....+.+.++.|.-.. ...+....+..+.|+|+.+..... .. .... ...|.++++||+|+.+... ..
T Consensus 100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~~----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LK-YPGM----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hh-hHhH----HhhCCEEEEEHHHccccchhhHH
Confidence 11345566666662100 011112334455677776443211 01 0111 1567899999999975322 12
Q ss_pred HHHHHHHH--cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 137 KQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 137 ~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
+.....+. ...+++++|+++|.|++++++++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 22222333 24789999999999999999999874
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.25 E-value=1.6e-10 Score=98.90 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=70.3
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cc----
Q 029077 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV---- 134 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~---- 134 (199)
.+.+|||||++.|...+...+..+|++++|+|+++. .++..+. .+.. .++|+++|+||+|+... ..
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccch
Confidence 389999999999888777778889999999999873 3333222 2222 27899999999998531 10
Q ss_pred ---------cHHHH-H-------H---HHH---------------cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 135 ---------KAKQV-T-------F---HRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 135 ---------~~~~~-~-------~---~~~---------------~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
.+... + + ... ..++++++||++|.|+++++.+|...
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 00000 0 0 111 13578999999999999999877543
No 298
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.23 E-value=5.5e-11 Score=99.89 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--CCc---------c---ccceeEEEe----eEEEEecCcEEEEEEEeCCCcc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK---------Y---EPTIGVEVH----PLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~--~~~---------~---~~~~~~~~~----~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
+.-+|+++|+.++|||||+.+|+...- ... + ....|.+.. ......++.++.+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 445799999999999999999874221 100 0 001122211 1122234457889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
.|.......++.+|++++|+|+......+....|... .. .+.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LR--ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HH--cCCCeEEEEECchhh
Confidence 8877778888999999999999876443333333322 22 256788999999975
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.22 E-value=1.9e-11 Score=89.21 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEEEEeCCCccccccccccc------c--cCCcEEEEEEeCCChhh-HhcHHHHHHHHHh-hcCCCcEEEEEeCCCCCCc
Q 029077 63 RFYCWDTAGQEKFGGLRDGY------Y--IHGQCAIIMFDVTARLT-YKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~------~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~-~~~~~p~iiv~~K~D~~~~ 132 (199)
.+.++|||||-++-..+... + ...-++++++|+....+ ...+..++..+.. ..-+.|.+.|.||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 78899999987754433322 1 23456778888653322 1111222221111 1138999999999999762
Q ss_pred ccc--HH-------------------HHHHHH---HcC-C-cEEEeccCCCCChHHHHHHHHHHH
Q 029077 133 QVK--AK-------------------QVTFHR---KKN-L-QYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 133 ~~~--~~-------------------~~~~~~---~~~-~-~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
... .+ ..++++ ..+ . .++.+|+.++.++.+++..+-+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 200 00 001111 112 2 699999999999999999887765
No 300
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.4e-10 Score=83.59 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=117.5
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhc---CC-------CC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
+.-..++++|..+|.-.-|||||...+.. .. +. .......|++.....+.++..+..+...|+||+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence 34457889999999999999999876442 11 10 111224677777777777777788899999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc-----cHHHHHHHHHcC
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN 146 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~-----~~~~~~~~~~~~ 146 (199)
..|-.++..-..+.|+.|+|++++|...-+.....+ +.+.. ..| ++++.||+|+.+... ..+..++...++
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 999888888888999999999999876544333221 22222 565 456669999987332 234457777777
Q ss_pred Cc-----EEEeccCC-CCC-------hHHHHHHHHHHHhCCCCCceecCCCCCCccc
Q 029077 147 LQ-----YYEISAKS-NYN-------FEKPFLYLARKLAGDPNLHFVESPALAPPEV 190 (199)
Q Consensus 147 ~~-----~~~~s~~~-~~~-------v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~ 190 (199)
++ ++.-|++. .+| +.++++++.+.+....+ -.|.|++.+.+.
T Consensus 163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--~~dkPflmpvEd 217 (394)
T COG0050 163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--DIDKPFLMPVED 217 (394)
T ss_pred CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--ccccccccccee
Confidence 54 66666542 222 35555555554443332 367777776553
No 301
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.21 E-value=1.1e-11 Score=90.30 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=35.4
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.++.++|...+. .+|++++++++.++++|||+.+ +|..+|-
T Consensus 133 ~r~~~~LSGGerQr--v~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~ 175 (258)
T COG1120 133 DRPVDELSGGERQR--VLIARALAQETPILLLDEPTSH-----LDIAHQI 175 (258)
T ss_pred cCcccccChhHHHH--HHHHHHHhcCCCEEEeCCCccc-----cCHHHHH
Confidence 34467777755555 6699999999999999999999 9999873
No 302
>PTZ00258 GTP-binding protein; Provisional
Probab=99.21 E-value=4.4e-10 Score=87.02 Aligned_cols=84 Identities=15% Similarity=-0.050 Sum_probs=51.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe--cCc---------------EEEEEEEeCCCcc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQE 73 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~l~D~~g~~ 73 (199)
..-++|+++|.+|||||||+|.|...... .....+++..+....+ .+. ...+.+.|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 55679999999999999999997543322 1112222222222111 111 2358999999964
Q ss_pred cccc-------cccccccCCcEEEEEEeCC
Q 029077 74 KFGG-------LRDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 74 ~~~~-------~~~~~~~~~d~~i~v~d~~ 96 (199)
.... .....++++|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3211 1122467899999999973
No 303
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=8.7e-12 Score=90.43 Aligned_cols=45 Identities=31% Similarity=0.472 Sum_probs=38.8
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.--.+..++|...+.+| |++++..+|+++++|||+.+ +|.+.++
T Consensus 132 ~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~ 176 (254)
T COG1121 132 LRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQK 176 (254)
T ss_pred hhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHH
Confidence 334457889999889877 99999999999999999999 9988764
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.5e-10 Score=93.34 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=91.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC--Cc------------cccceeEEEeeEEEEecCc-EEEEEEEeCCCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FE--KK------------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ 72 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~--~~------------~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~ 72 (199)
..+.-+|+++|+..+|||||..+++... .. +. .....|.+.......+... ++.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456799999999999999999987421 11 01 1123455555555555445 599999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
-+|.......++-+|++++|+|+...-..+.-..|...... ++|.++++||+|.....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccC
Confidence 99999999999999999999999988666665566654433 89999999999986543
No 305
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=6.9e-10 Score=82.93 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=95.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC----CCCCccc-cceeEEEe----eEEEE-----ecCcEEEEEEEeCCCccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEKKYE-PTIGVEVH----PLDFF-----TNCGKIRFYCWDTAGQEKFG 76 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~----~~~~~~~-~~~~~~~~----~~~~~-----~~~~~~~~~l~D~~g~~~~~ 76 (199)
+..++++++|...||||||.+++..- .|+.... .+.|.+.. ..... -.+....+.+.|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 34599999999999999999996631 2222221 12333221 11111 13455788999999987644
Q ss_pred ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHH----HHHHHH-------
Q 029077 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQ----VTFHRK------- 144 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~----~~~~~~------- 144 (199)
........-.|..++|+|+..+.--+.+.-.+ +.+. -....++|.||.|...+ +..... ....+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 44444456679999999998765444333221 1111 14456677788886432 221111 112221
Q ss_pred cCCcEEEeccCCC----CChHHHHHHHHHHHhCCC
Q 029077 145 KNLQYYEISAKSN----YNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 145 ~~~~~~~~s~~~~----~~v~~~~~~i~~~~~~~~ 175 (199)
.+.+++++|+..| .++.++.+.|.+++.+..
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 1368999999999 566666666666655433
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.14 E-value=1.4e-09 Score=81.27 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---- 78 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---- 78 (199)
.++|+|+|.+|+|||||+|.|+........ ..+..+........-++..+.+.++||||.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999998865443221 122233333444444566789999999993221110
Q ss_pred ----------------------c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 79 ----------------------R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 79 ----------------------~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
+ ...=...+++++.++.+... ...+ =+..+.+....+++|-|..|.|.-.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLSKRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhcccccEEeEEecccccCHHHH
Confidence 0 00012568999999876421 1111 12334445568899999999998653221
Q ss_pred ----HHHHHHHHHcCCcEEEecc
Q 029077 136 ----AKQVTFHRKKNLQYYEISA 154 (199)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~s~ 154 (199)
..........++.+|....
T Consensus 161 ~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 161 QAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHcCceeecccc
Confidence 2223445567776655433
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.14 E-value=8.7e-10 Score=83.51 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=62.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--- 137 (199)
.+.+.+.||+|... .....+..+|.++++...... +++......+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence 57788999998542 112345667888777443322 3333333322 2677899999999975432111
Q ss_pred HH--HHH---H---HcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 138 QV--TFH---R---KKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 138 ~~--~~~---~---~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
.. .+. . .+..+++.+|+++|.|+++++.+|.+..
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 00 111 1 1224689999999999999999998864
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.13 E-value=4e-10 Score=78.22 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=42.2
Q ss_pred EEEEEeCCCcccc----cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077 63 RFYCWDTAGQEKF----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (199)
Q Consensus 63 ~~~l~D~~g~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~ 127 (199)
.+.++|+||.... ......++..+|++|+|.++....+-.....+....... ....++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 4679999996432 234566779999999999998865544444444444433 34488888884
No 309
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=3e-09 Score=81.63 Aligned_cols=81 Identities=16% Similarity=-0.029 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCc---------------EEEEEEEeCCCccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG 76 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~~ 76 (199)
++|+++|.++||||||+|++...... .....+++..+. .+.+.+. ...+.+.|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 78999999999999999997755421 111122221111 1111111 1358999999964321
Q ss_pred cc-------ccccccCCcEEEEEEeCC
Q 029077 77 GL-------RDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 77 ~~-------~~~~~~~~d~~i~v~d~~ 96 (199)
.. ....++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 122367899999999984
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.9e-10 Score=85.24 Aligned_cols=136 Identities=21% Similarity=0.267 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc--C------CCCC------------ccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT--G------EFEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~--~------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
++-.-+||-.|.+|||||-..|+. + .... +-....|++..+..+++++.+..+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999988763 1 1100 0112356777777888888899999999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcE
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 149 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~ 149 (199)
++.|..-.--.+..+|.+++|+|+..+-.-+. ..+.+.| +++|++=++||.|...+...+..-++-+.+++..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~ 165 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC 165 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence 99987766666788999999999976532222 2233333 5899999999999988766555555556666554
Q ss_pred EEe
Q 029077 150 YEI 152 (199)
Q Consensus 150 ~~~ 152 (199)
+++
T Consensus 166 ~Pi 168 (528)
T COG4108 166 API 168 (528)
T ss_pred ecc
Confidence 443
No 311
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.09 E-value=2.3e-09 Score=78.04 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=43.7
Q ss_pred EEEEEEeCCCcccc-------------ccccccccc-CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077 62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (199)
Q Consensus 62 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~ 127 (199)
..+.++|+||.... ......|++ ..+.+++|+|+...-.-.........+.. ...++++|+||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 67889999997421 112344566 45688899988653222222233333332 378999999999
Q ss_pred CCCCcc
Q 029077 128 DVKNRQ 133 (199)
Q Consensus 128 D~~~~~ 133 (199)
|..+..
T Consensus 203 D~~~~~ 208 (240)
T smart00053 203 DLMDEG 208 (240)
T ss_pred CCCCcc
Confidence 987643
No 312
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.09 E-value=2.5e-10 Score=89.69 Aligned_cols=158 Identities=22% Similarity=0.359 Sum_probs=118.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+|++|+|..++|||+|+.+++.+.|.....+.-| .....+..+++...+.+.|.+|. ....|....|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----chhhhhhhccce
Confidence 35679999999999999999999999888766555443 44455566778888888888773 235667889999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC----ccccHHHH-HHHHHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~----~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
|+||...+..+|+.+......+..+. ..+|+++++++.-... .....+.. ..+....+.||++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999998887776665442 4678888887654321 12222223 34445567899999999999999
Q ss_pred HHHHHHHHHhCC
Q 029077 163 PFLYLARKLAGD 174 (199)
Q Consensus 163 ~~~~i~~~~~~~ 174 (199)
+|+.++..+...
T Consensus 180 vf~~~~~k~i~~ 191 (749)
T KOG0705|consen 180 VFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHHH
Confidence 999999877643
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.07 E-value=2.9e-09 Score=86.46 Aligned_cols=120 Identities=10% Similarity=0.059 Sum_probs=69.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------c----cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------L----RD 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~----~~ 80 (199)
.-.++|+++|.+|+||||++|.++............+++. ............+.++||||...... . ..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 4457999999999999999999886543222111122221 11111111346789999999654311 0 11
Q ss_pred cccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCCC
Q 029077 81 GYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN 131 (199)
Q Consensus 81 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~~ 131 (199)
.++. ..|++|+|..++......+-..++..+...+. -..+|||+|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1223 47999999887633222122234444444442 256788999998753
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.1e-09 Score=82.79 Aligned_cols=156 Identities=15% Similarity=0.058 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
.|+..|.---|||||++.+.+...... -....|++..-..+...-.+..+.++|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578889999999999998665433211 1223454444444444445568999999999998887777788899999999
Q ss_pred eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HHHHH---HcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHR---KKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~~~~---~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
+.++.-..+...... +.........++|.||.|..+.....+. .++.. ....+++.+|+.+|.|++++.+.|..
T Consensus 82 ~~deGl~~qtgEhL~--iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 82 AADEGLMAQTGEHLL--ILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred eCccCcchhhHHHHH--HHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 998765444333211 1122234556899999999875432221 12222 33466899999999999999999998
Q ss_pred HHh
Q 029077 170 KLA 172 (199)
Q Consensus 170 ~~~ 172 (199)
...
T Consensus 160 L~~ 162 (447)
T COG3276 160 LLE 162 (447)
T ss_pred hhh
Confidence 874
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.06 E-value=3.9e-10 Score=81.63 Aligned_cols=101 Identities=8% Similarity=0.044 Sum_probs=59.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV- 139 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~- 139 (199)
.+.+.+++|.|--. .-.....-+|.+++|....-....+.++.-+-++.. ++|+||.|...........
T Consensus 121 G~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~vVNKaD~~gA~~~~~~l~ 190 (266)
T PF03308_consen 121 GFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IFVVNKADRPGADRTVRDLR 190 (266)
T ss_dssp T-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EEEEE--SHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EEEEeCCChHHHHHHHHHHH
Confidence 35555666654211 112234568999999988777766666655554433 6889999965433322221
Q ss_pred ---HHHHH----cCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 140 ---TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 140 ---~~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
.+... +.-+++.+||.++.|++++++.|.+..
T Consensus 191 ~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 191 SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 22111 224799999999999999999988643
No 316
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.3e-09 Score=80.64 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEE--------------------EeeEEEEe--cC---c-EE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVE--------------------VHPLDFFT--NC---G-KI 62 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~--------------------~~~~~~~~--~~---~-~~ 62 (199)
.+.++|.++|...-|||||.+.|.+ -+...... ..|.+ .+...-.. .+ . -.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 4679999999999999999998553 22110000 01111 00000000 11 1 24
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----
Q 029077 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---- 138 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~---- 138 (199)
.+.+.|.||++-.-..+..-..-.|+.++|++++.+..--...+-+..+.- ..-..++++-||.|+..++...+.
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-igik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-IGIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-hccceEEEEecccceecHHHHHHHHHHH
Confidence 678999999987655555555667999999999876433223332322222 234667888899999876544433
Q ss_pred HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077 139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
.+|.+. .+.+++.+||..+.|++-+++.|.+.+...
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 344443 256899999999999999999999888643
No 317
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.05 E-value=3.2e-09 Score=78.12 Aligned_cols=102 Identities=10% Similarity=0.009 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHH
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 140 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~ 140 (199)
.+.+.++.|.|--... .....-+|.++++.-..-+...+-++.-+-++.. |+|+||.|....+.......
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-------i~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-------IIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-------eeeEeccChhhHHHHHHHHH
Confidence 4555666665532211 2233457888777766666666666655544443 68899999766433322221
Q ss_pred H----H------HHcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 141 F----H------RKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 141 ~----~------~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+ . ..+.-+++.+||..|+|+.++++.+.+...
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 1 1 122346999999999999999999987654
No 318
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.04 E-value=1.9e-09 Score=81.76 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=77.4
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HhcHHHHHHHHHhhc-----CCCcEEEEEeC
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVC-----ENIPIVLCGNK 126 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~-----~~~p~iiv~~K 126 (199)
.++..+.++|.+|+...+..|...|.+++++|+|+++++-.- ...+.+-+..+...+ .+.++|++.||
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence 356888999999999888889999999999999999875321 122333333333322 57999999999
Q ss_pred CCCCCcc-----------------ccHHHH--------HHHHH--cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 127 VDVKNRQ-----------------VKAKQV--------TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 127 ~D~~~~~-----------------~~~~~~--------~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
.|+-++. ...+.. ++.+. ..+-+..+.|.+-.+++.+|.++...+..
T Consensus 272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 9973211 111111 11111 13446677888889999999988887754
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.02 E-value=8e-09 Score=71.57 Aligned_cols=77 Identities=10% Similarity=0.023 Sum_probs=48.4
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHH--HcCCcEEEeccCCCCChHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHR--KKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~--~~~~~~~~~s~~~~~~v~~~ 163 (199)
.-|+|+|++.++..- .+..+.+ ...=++|+||.|+....-. +...+.++ ....+++++|.++|.|++++
T Consensus 120 ~~v~VidvteGe~~P--~K~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 120 LRVVVIDVTEGEDIP--RKGGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred eEEEEEECCCCCCCc--ccCCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 667888888764211 0001111 1133788999999764332 22223233 34578999999999999999
Q ss_pred HHHHHHHH
Q 029077 164 FLYLARKL 171 (199)
Q Consensus 164 ~~~i~~~~ 171 (199)
+.++....
T Consensus 193 ~~~i~~~~ 200 (202)
T COG0378 193 LRFIEPQA 200 (202)
T ss_pred HHHHHhhc
Confidence 99887654
No 320
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=5.1e-09 Score=74.24 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-HHHHH-----HHcCC-
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL- 147 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~~~~~-----~~~~~- 147 (199)
+......+++.+|++++|+|+++... .|...+.....+.|+++|+||+|+.......+ ...+. +..+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 46667778899999999999987542 12222222234789999999999865433222 22222 22332
Q ss_pred --cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecC
Q 029077 148 --QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 182 (199)
Q Consensus 148 --~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~ 182 (199)
.++.+||++|.|+++++..|.+.+.......+.-.
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 58999999999999999999988754444444433
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.9e-09 Score=86.64 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=81.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cc------cceeEEEeeEEE-----EecCcEEEEEEEeCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YE------PTIGVEVHPLDF-----FTNCGKIRFYCWDTA 70 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~------~~~~~~~~~~~~-----~~~~~~~~~~l~D~~ 70 (199)
....+|+++|+-+.|||+|+.-|.....+.- |. ...|++.+.... ...++.+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3456899999999999999997664333211 11 112333222211 225677899999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~ 129 (199)
|+-.|-......++.+|++++++|+.++-.+..-.-....+. .+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence 999998888889999999999999998766543222222222 38999999999995
No 322
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.7e-09 Score=85.94 Aligned_cols=159 Identities=22% Similarity=0.227 Sum_probs=101.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEE--------Eec----CcEEEEEEEeCCCcc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDF--------FTN----CGKIRFYCWDTAGQE 73 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~--------~~~----~~~~~~~l~D~~g~~ 73 (199)
+-+..-|||+|...+|||-|+..+-..+... .....+|.++.+... ..+ .+-..+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4556679999999999999998755433221 112223434333321 001 122356889999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC-------Ccccc----------H
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-------NRQVK----------A 136 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~-------~~~~~----------~ 136 (199)
.|..++......||.+|+|+|+..+-.-+. ..-++.++. ++.|+|+..||+|.- +..+. .
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqt-iESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQT-IESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcch-hHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 999999999999999999999986532222 223344444 489999999999951 11100 0
Q ss_pred HH---------HHHHHH-cC-------------CcEEEeccCCCCChHHHHHHHHHHH
Q 029077 137 KQ---------VTFHRK-KN-------------LQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 137 ~~---------~~~~~~-~~-------------~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
.. .+|+.. ++ +..+++||.+|+|+.+++.+|++..
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 00 012111 11 2467799999999999988887644
No 323
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.96 E-value=4.3e-09 Score=78.08 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=96.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--cccccccc----
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY---- 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~---- 82 (199)
...--|.++|..+||||||++.|......+ ....|...+....... ..-.+.+.||.|--. -..+..+|
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp---sg~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP---SGNFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC---CCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 444578999999999999999977433322 2333443333333332 234667789988321 11111221
Q ss_pred --ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCc----EEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccC
Q 029077 83 --YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 155 (199)
Q Consensus 83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p----~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
...+|.++.|.|++.+..-+.......-+.+.- +..| ++=|-||.|.+......+. . ..+.+|++
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------n--~~v~isal 324 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------N--LDVGISAL 324 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------C--Cccccccc
Confidence 457999999999999876554444444444431 1222 3455688887765443321 1 15678999
Q ss_pred CCCChHHHHHHHHHHHhCCCCC
Q 029077 156 SNYNFEKPFLYLARKLAGDPNL 177 (199)
Q Consensus 156 ~~~~v~~~~~~i~~~~~~~~~~ 177 (199)
+|.|++++.+.+-.++......
T Consensus 325 tgdgl~el~~a~~~kv~~~t~~ 346 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASETTV 346 (410)
T ss_pred cCccHHHHHHHHHHHhhhhhee
Confidence 9999999999888777654443
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=98.96 E-value=5e-09 Score=80.59 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=68.2
Q ss_pred ccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccC
Q 029077 77 GLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 155 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~ 155 (199)
.+.+..+.++|.+++|+|+.++. +...+..|+..... .++|+++|+||+|+.+..............++.++.+|+.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~ 158 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE 158 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence 44455688999999999998765 34455666665533 4899999999999975432233344556778899999999
Q ss_pred CCCChHHHHHHHHHH
Q 029077 156 SNYNFEKPFLYLARK 170 (199)
Q Consensus 156 ~~~~v~~~~~~i~~~ 170 (199)
+|.|+++++..+...
T Consensus 159 tg~GI~eL~~~L~~k 173 (352)
T PRK12289 159 TGIGLEALLEQLRNK 173 (352)
T ss_pred CCCCHHHHhhhhccc
Confidence 999999988877643
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.96 E-value=3.8e-09 Score=72.47 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=64.1
Q ss_pred ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCC
Q 029077 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS 156 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
...+...+++|++++|+|++++...... .+...+.. .++|+++|+||+|+.+.........+....+.+++.+|+++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3455667789999999999876433321 22222221 37899999999998643222222233344567899999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 029077 157 NYNFEKPFLYLARKLAG 173 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~~ 173 (199)
+.|++++++.+.+.+..
T Consensus 81 ~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999887653
No 326
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.95 E-value=6.8e-09 Score=77.20 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCCCCcc--ccHHHHHHHHH--cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 117 ~~p~iiv~~K~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
...-++|+||+|+.... ......+..+. ...+++.+|+++|.|++++.++|...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45668999999997532 12222232322 35779999999999999999999764
No 327
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=4.7e-09 Score=78.98 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=68.3
Q ss_pred cccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077 80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
+..+.++|.+++|+|+.++. ++..+..|+..+... ++|+++|+||+|+.+..............+.+++.+|++++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 44588999999999999887 777788888766553 799999999999975422222234445578899999999999
Q ss_pred ChHHHHHHHHH
Q 029077 159 NFEKPFLYLAR 169 (199)
Q Consensus 159 ~v~~~~~~i~~ 169 (199)
|+++++..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99998877653
No 328
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.6e-08 Score=72.29 Aligned_cols=156 Identities=18% Similarity=0.203 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCcccc-ccc--ccccccCCc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKF-GGL--RDGYYIHGQ 87 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~-~~~--~~~~~~~~d 87 (199)
+-+|+++|...|||||+.+- +.....+.- |.-.+... ..-.+.+.-+.+.+||+||+-.+ ... ....++.+.
T Consensus 27 kp~ilLMG~rRsGKsSI~KV-VFhkMsPne--TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKV-VFHKMSPNE--TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred CceEEEEeecccCcchhhhe-eeeccCCCc--eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 35699999999999999886 444433322 32222111 11123345578999999998653 222 255689999
Q ss_pred EEEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH--------HH-HHH----HHcCCcEEEe
Q 029077 88 CAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QV-TFH----RKKNLQYYEI 152 (199)
Q Consensus 88 ~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--------~~-~~~----~~~~~~~~~~ 152 (199)
++|+|+|+.+. +...++.....+.....+++.+=++..|.|.-......+ .. +++ ....+.++.+
T Consensus 104 ALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 104 ALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred eEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999999764 223333333333334457788888999999654221111 01 111 1123457777
Q ss_pred ccCCCCChHHHHHHHHHHHh
Q 029077 153 SAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~ 172 (199)
|..+. .+-|.|..+.+.+.
T Consensus 184 SIyDH-SIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 184 SIYDH-SIFEAFSKVVQKLI 202 (347)
T ss_pred eecch-HHHHHHHHHHHHHh
Confidence 77764 56677777776665
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=6.6e-09 Score=70.07 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
+++++|.+|+|||||+|++...... ......|.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999998765443 3333455555544444433 5789999994
No 330
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3.1e-08 Score=74.12 Aligned_cols=176 Identities=17% Similarity=0.121 Sum_probs=112.9
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhc---C-------CCC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT---G-------EFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~---~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
.-+.++++|.-||...-|||||-..+.. . .|. ..-....|++.....+.++.....+.-.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 4467889999999999999999865431 0 111 1112245677776666777667778889999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-----cHHHHHHHHHcCC-
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKNL- 147 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-----~~~~~~~~~~~~~- 147 (199)
.|-.+...-..+.|+.|+|+.++|..--+.-.. -.+.+...-..++++.||.|+.+... ..+..++...+++
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 998888888889999999999999864333222 22333333345677789999985332 2344567777764
Q ss_pred ----cEEEecc---CCCCC-------hHHHHHHHHHHHhCCCCCceecCCCCCC
Q 029077 148 ----QYYEISA---KSNYN-------FEKPFLYLARKLAGDPNLHFVESPALAP 187 (199)
Q Consensus 148 ----~~~~~s~---~~~~~-------v~~~~~~i~~~~~~~~~~~~~~~p~~~~ 187 (199)
+++.-|| +.|.+ +.++++.+-+.+....+. ++.|+..+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~--~~~pFl~p 258 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD--LDKPFLLP 258 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc--cCCCceee
Confidence 5777555 45533 333444443334333332 55666554
No 331
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.1e-09 Score=78.01 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=36.5
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 148 QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 148 ~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+..++.++|..-+. ..|++++.++|++.+.|||... +|+...
T Consensus 141 A~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a 183 (258)
T COG3638 141 AYQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESA 183 (258)
T ss_pred HHHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhH
Confidence 367788888876555 6799999999999999999999 998764
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.85 E-value=1.4e-08 Score=76.80 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=63.8
Q ss_pred cccCCcEEEEEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
.+.++|.+++|+|++++..+.. +..|+..+.. .++|+++|+||+|+.+. ....+.....+..+++++++|++++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 4589999999999988765443 4567666544 48999999999999632 222233455666788999999999999
Q ss_pred hHHHHHHHH
Q 029077 160 FEKPFLYLA 168 (199)
Q Consensus 160 v~~~~~~i~ 168 (199)
+++++..+.
T Consensus 155 i~~L~~~l~ 163 (298)
T PRK00098 155 LDELKPLLA 163 (298)
T ss_pred HHHHHhhcc
Confidence 999887664
No 333
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.85 E-value=1.2e-08 Score=71.86 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=30.8
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
+.++|. ++...+|++++.=+|++.++|||+++ ||++.
T Consensus 135 ~qLSGG--QqQRVAIARALaM~P~vmLFDEPTSA-----LDPEl 171 (240)
T COG1126 135 AQLSGG--QQQRVAIARALAMDPKVMLFDEPTSA-----LDPEL 171 (240)
T ss_pred cccCcH--HHHHHHHHHHHcCCCCEEeecCCccc-----CCHHH
Confidence 556655 44557899999999999999999999 99864
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.6e-08 Score=69.47 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
..++|+++|.+|+|||||+|+|.... .....++.|.+.....+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999976543 233344556555544443322 367899998
No 335
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.83 E-value=6.5e-09 Score=77.20 Aligned_cols=79 Identities=16% Similarity=-0.022 Sum_probs=47.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCc---------------EEEEEEEeCCCcccccc-
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFGG- 77 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~~~- 77 (199)
|+++|.++||||||+|++........ ...+++..+. .+.+.+. ...+.++|+||.....+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999776544211 1122221111 1111111 23589999999643211
Q ss_pred ---c---ccccccCCcEEEEEEeCC
Q 029077 78 ---L---RDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 78 ---~---~~~~~~~~d~~i~v~d~~ 96 (199)
+ ....++++|++++|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 122357899999999874
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.82 E-value=2e-07 Score=70.61 Aligned_cols=138 Identities=17% Similarity=0.298 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR- 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~- 79 (199)
.-.++|+++|++|+|||||+|.|++...... ..++.........+.-++....++++||||-..+-...
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5678999999999999999999886533222 22334344455555556667889999999933221110
Q ss_pred -------------ccc------------c--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 80 -------------DGY------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 80 -------------~~~------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
..| + ...+++++.+..+.. .+..+. +..+.+.+..+-+|-|+.|.|.-..
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTD 177 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCH
Confidence 001 1 145777777765532 222222 2223344457788888899997542
Q ss_pred c----ccHHHHHHHHHcCCcEEE
Q 029077 133 Q----VKAKQVTFHRKKNLQYYE 151 (199)
Q Consensus 133 ~----~~~~~~~~~~~~~~~~~~ 151 (199)
. ......+.....++++|.
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC
Confidence 2 222334566667777775
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=3.3e-08 Score=76.06 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=68.1
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCCcEEEeccCCCC
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
...|+|.+++|++.....++..+..|+..... .++|.++|+||+|+.+... ..+........+.+++++|+.++.
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 35789999999999888888888898775543 4789999999999975332 222334455678899999999999
Q ss_pred ChHHHHHHHHHH
Q 029077 159 NFEKPFLYLARK 170 (199)
Q Consensus 159 ~v~~~~~~i~~~ 170 (199)
|+++++..|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999888653
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.80 E-value=2e-08 Score=69.84 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
..++++++|.+|+|||||+|++..... ....+..|++.....+..+ ..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 458999999999999999999775433 3344556666655554433 2578999998
No 339
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.7e-07 Score=69.55 Aligned_cols=142 Identities=15% Similarity=0.272 Sum_probs=84.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------- 75 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------- 75 (199)
-.+.+.++|++|.|||||+|.|+.....+. ...+...........-++..+.+++.||||-...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999876544322 2223344444455555666788999999993221
Q ss_pred ccc------------------cccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 76 GGL------------------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 76 ~~~------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
+.. .+..+. ..+++++.+..+-. .+..+. +..+......+.+|-|..|.|.......
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHH
Confidence 110 011122 46777777775532 122211 1223333457888888899998653222
Q ss_pred ----HHHHHHHHHcCCcEEEeccCC
Q 029077 136 ----AKQVTFHRKKNLQYYEISAKS 156 (199)
Q Consensus 136 ----~~~~~~~~~~~~~~~~~s~~~ 156 (199)
....+.....++.+|......
T Consensus 177 ~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 177 NQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred HHHHHHHHHHHHHcCcceecCCCCc
Confidence 223455666777766655543
No 340
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4e-07 Score=69.36 Aligned_cols=83 Identities=24% Similarity=0.157 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-c----cceeEEEeeEEEE-------ec----CcEEEEEEEeCCCccc-
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-E----PTIGVEVHPLDFF-------TN----CGKIRFYCWDTAGQEK- 74 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~-~----~~~~~~~~~~~~~-------~~----~~~~~~~l~D~~g~~~- 74 (199)
.++++++|.|++|||||+|.+...... ..| . |-.|...-+. .. .. .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 478999999999999999997754432 111 1 1122211111 00 01 1235789999998533
Q ss_pred ---ccc---cccccccCCcEEEEEEeCC
Q 029077 75 ---FGG---LRDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 75 ---~~~---~~~~~~~~~d~~i~v~d~~ 96 (199)
.+. .....++.+|+++.|+++.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 222 2334478999999999976
No 341
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.73 E-value=2.5e-08 Score=70.67 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=41.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCC-------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
..+++++|.+|+|||||+|.|...... .......|++.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 468999999999999999998764321 12334456777776666543 478999998
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=4.5e-08 Score=68.22 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
...++++++|.+|+|||||+|++....+. ...+..+++.....+.++ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 44579999999999999999998765543 333444555554444443 45789999984
No 343
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=4.7e-08 Score=70.49 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=29.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 195 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~ 195 (199)
...++|. ......|++++...|+++++|||+.+ +|-.
T Consensus 128 P~qLSGG--MrQRVaiARAL~~~P~lLLlDEPFgA-----LDal 164 (248)
T COG1116 128 PHQLSGG--MRQRVAIARALATRPKLLLLDEPFGA-----LDAL 164 (248)
T ss_pred ccccChH--HHHHHHHHHHHhcCCCEEEEcCCcch-----hhHH
Confidence 3455543 33467899999999999999999999 8854
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=5.3e-08 Score=75.62 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=69.0
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHH----HHHHHcC
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKKN 146 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~----~~~~~~~ 146 (199)
.+.+......+...++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+....... +.. ++++..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 3456667777788999999999987643 33555555555688999999999986543322 212 3456666
Q ss_pred C---cEEEeccCCCCChHHHHHHHHHH
Q 029077 147 L---QYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 147 ~---~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
+ .++.+||++|.|+++++..|.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6 48999999999999999998764
No 345
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-06 Score=63.44 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=60.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYY 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~ 83 (199)
+..-||+++|-|.+|||||+..+.... .+......++...+...+......+++.|.||.-.. ........
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence 456799999999999999999755222 222223334455555555666778899999984321 11224456
Q ss_pred cCCcEEEEEEeCCChhhH
Q 029077 84 IHGQCAIIMFDVTARLTY 101 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~ 101 (199)
+.+|.+++|.|++..+.-
T Consensus 138 rtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQ 155 (364)
T ss_pred ecccEEEEEecCCcchhH
Confidence 889999999999976543
No 346
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.70 E-value=1.2e-07 Score=68.11 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=37.1
Q ss_pred HHHHHHcCCc----EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 139 VTFHRKKNLQ----YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 139 ~~~~~~~~~~----~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..+.+..++. ....+.++|. ++-..+|++++..+|.+.+.|||+.+ +|....
T Consensus 123 ~~l~~~lgl~~~~~~~~p~eLSGG--qqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~ 178 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSELSGG--QQQRVAIARALINNPKIILADEPTGN-----LDSKTA 178 (226)
T ss_pred HHHHHhcCChhhhccCCchhcCHH--HHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHH
Confidence 3444444443 1335666654 45567899999999999999999999 887653
No 347
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.69 E-value=2.1e-07 Score=70.33 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHcCCcE---EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 140 TFHRKKNLQY---YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 140 ~~~~~~~~~~---~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++....++.- -.+...++..-+. -.|+.++..+|.++++|||+.+ +|+...+
T Consensus 119 ~~l~~~~L~~~~~~~~~~lS~G~kqr--l~ia~aL~~~P~lliLDEPt~G-----LDp~~~~ 173 (293)
T COG1131 119 ELLELFGLEDKANKKVRTLSGGMKQR--LSIALALLHDPELLILDEPTSG-----LDPESRR 173 (293)
T ss_pred HHHHHcCCchhhCcchhhcCHHHHHH--HHHHHHHhcCCCEEEECCCCcC-----CCHHHHH
Confidence 4455555542 3345555544444 4599999999999999999999 9987653
No 348
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.9e-08 Score=75.74 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=105.0
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcC--------------------C--CC-------CccccceeEEEeeEEEEecC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------E--FE-------KKYEPTIGVEVHPLDFFTNC 59 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~--------------------~--~~-------~~~~~~~~~~~~~~~~~~~~ 59 (199)
.+..++++.++|.-.+||||+-..++.. + +. ..-.+..|.+...-...++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 3477899999999999999987664420 0 00 00111223344444444555
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhcH--HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ- 133 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~l~~~~~~~p~iiv~~K~D~~~~~- 133 (199)
..-.+++.|+||+..|......-..++|..++|.++.-.+ .|+.. ..-+..+.....-..+|+++||+|.+...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 6678999999999999999888899999999999986543 23332 12344555555667889999999986421
Q ss_pred -------ccHHHHHHHHHcC------CcEEEeccCCCCChHHHHH
Q 029077 134 -------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 134 -------~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 165 (199)
...+...+.+..+ ..++++|..+|.++.+...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2223334444433 3599999999999987554
No 349
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=8.7e-08 Score=65.71 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
...+++++|.+|+|||||+|++.... .....++.|.+........+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 45789999999999999999976433 34455666665443323222 2689999998
No 350
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.66 E-value=8e-08 Score=68.93 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=32.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+. -+|++++.-+|+++.+|||+.+ +|..-|.
T Consensus 140 ~eLSGGQ~QR--iaIARAL~~~PklLIlDEptSa-----LD~siQa 178 (252)
T COG1124 140 HELSGGQRQR--IAIARALIPEPKLLILDEPTSA-----LDVSVQA 178 (252)
T ss_pred hhcChhHHHH--HHHHHHhccCCCEEEecCchhh-----hcHHHHH
Confidence 4466666655 6799999999999999999999 9987664
No 351
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.66 E-value=6.4e-08 Score=66.92 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.7
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.++|. ++....|+++++.+|.+++.|||+-+ +|+...+
T Consensus 136 ~~LSGG--EQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~ 174 (223)
T COG2884 136 SQLSGG--EQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSW 174 (223)
T ss_pred cccCch--HHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHH
Confidence 455443 55668899999999999999999999 9887543
No 352
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.65 E-value=3.6e-08 Score=71.81 Aligned_cols=153 Identities=13% Similarity=0.158 Sum_probs=86.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ceeEEEeeEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~ 79 (199)
..+.+++++|.+++|||+|+|.++.......... +.|.+ ...+.. ...-.+.+.|.||. ..+....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T-q~in~f--~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT-QAINHF--HVGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc-eeeeee--eccceEEEEecCCcccccCCccCcchHhHhH
Confidence 4668999999999999999998764333222211 33322 112221 12346778899992 2234444
Q ss_pred cccccCCcEEE---EEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCCccc------cHH-------HHHHH
Q 029077 80 DGYYIHGQCAI---IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAK-------QVTFH 142 (199)
Q Consensus 80 ~~~~~~~d~~i---~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~~~~------~~~-------~~~~~ 142 (199)
..|+.+.+..+ +++|++-+ ++.... .++.+.+. ++|..+|+||+|...... ... ....+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 55554444333 44444422 222221 22223332 899999999999754221 111 11122
Q ss_pred HHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 143 RKKNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 143 ~~~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
.....+.+.+|+.++.|+.+++-.|++.
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 2334567789999999999987766654
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.2e-07 Score=71.11 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=41.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
...++++++|.+|+|||||+|+|..... ....+..|++.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 4568999999999999999999775432 22234556665554444432 4689999996
No 354
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.4e-07 Score=66.44 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
|+..=.|=++..-.|++++.-+|+++++|||+.+ ||+-+
T Consensus 146 sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIs 184 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPIS 184 (253)
T ss_pred CccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchh
Confidence 4443344455556799999999999999999999 88755
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.6e-07 Score=70.79 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=42.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
...++++++|.+|+|||||+|+|..... ....+..|++.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 4568999999999999999999775443 23344566666654444332 47899999964
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.63 E-value=1.8e-07 Score=65.32 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.-.+++++..+|.+.++|||+.+ +|...+
T Consensus 77 ~qrv~laral~~~p~lllLDEPts~-----LD~~~~ 107 (177)
T cd03222 77 LQRVAIAAALLRNATFYLFDEPSAY-----LDIEQR 107 (177)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence 3445689999999999999999999 887764
No 357
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.62 E-value=1.1e-07 Score=72.62 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=45.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
...++++|+|.+++|||||||+|.+... ....+..|+|.....+..+.. +.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 4568999999999999999999775544 445556677777766665543 7899999953
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=74.58 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHHcCCc----EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 138 QVTFHRKKNLQ----YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 138 ~~~~~~~~~~~----~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
....+...+++ .-.+..++|..-. .-.+++.+.+.|+++++|||+.+ ||+.+.+
T Consensus 419 ~r~~L~~f~F~~~~~~~~v~~LSGGEk~--Rl~La~ll~~~pNvLiLDEPTNh-----LDi~s~~ 476 (530)
T COG0488 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKA--RLLLAKLLLQPPNLLLLDEPTNH-----LDIESLE 476 (530)
T ss_pred HHHHHHHcCCChHHHhCchhhcCHhHHH--HHHHHHHhccCCCEEEEcCCCcc-----CCHHHHH
Confidence 34455555553 3446667665444 45599999999999999999999 9998754
No 359
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=9.7e-07 Score=64.04 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|... -.-.|++++..+|.++++|||+.+ +|....+
T Consensus 130 ~~LSgG~~--qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~ 168 (220)
T cd03293 130 HQLSGGMR--QRVALARALAVDPDVLLLDEPFSA-----LDALTRE 168 (220)
T ss_pred ccCCHHHH--HHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHH
Confidence 34444433 446699999999999999999999 9987653
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=3e-07 Score=64.04 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=60.9
Q ss_pred ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077 79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
....+.++|.+++|+|++++...... . +.....+.|.++|+||+|+.+........+..+..+..++.+|++++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 87 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 35567899999999999876443221 1 122224679999999999964322222223334445668999999999
Q ss_pred ChHHHHHHHHHHH
Q 029077 159 NFEKPFLYLARKL 171 (199)
Q Consensus 159 ~v~~~~~~i~~~~ 171 (199)
|++++...+...+
T Consensus 88 gi~~L~~~l~~~l 100 (171)
T cd01856 88 GVKKLLKAAKKLL 100 (171)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999988875
No 361
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2.4e-07 Score=70.26 Aligned_cols=118 Identities=22% Similarity=0.185 Sum_probs=75.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEE------ec------------------------
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFF------TN------------------------ 58 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~------~~------------------------ 58 (199)
.+-=|+++|.-..||||+++-|+...+++. ..||. ++....+. +.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 344589999999999999999887666532 11221 11110000 00
Q ss_pred --------Cc-EEEEEEEeCCCcc-----------cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCC
Q 029077 59 --------CG-KIRFYCWDTAGQE-----------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI 118 (199)
Q Consensus 59 --------~~-~~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~ 118 (199)
+. --.+++.||||.- .|....+.|+..+|.++++||+....--++....+..+... .-
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Ed 212 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--ED 212 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cc
Confidence 11 1246799999932 23444577789999999999987655555666666666655 34
Q ss_pred cEEEEEeCCCCCCcc
Q 029077 119 PIVLCGNKVDVKNRQ 133 (199)
Q Consensus 119 p~iiv~~K~D~~~~~ 133 (199)
.+-+|.||.|..+.+
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 456778999987744
No 362
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.59 E-value=3.1e-07 Score=69.90 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 139 VTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 139 ~~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
.+.++..++. --..+.++|..-+. .+++++++.+|+..++|||..+ +|...
T Consensus 115 ~eva~~L~l~~lL~r~P~~LSGGQrQR--VAlaRAlVr~P~v~L~DEPlSn-----LDa~l 168 (338)
T COG3839 115 KEVAKLLGLEHLLNRKPLQLSGGQRQR--VALARALVRKPKVFLLDEPLSN-----LDAKL 168 (338)
T ss_pred HHHHHHcCChhHHhcCcccCChhhHHH--HHHHHHHhcCCCEEEecCchhH-----hhHHH
Confidence 3445555543 12246677766555 6799999999999999999999 88653
No 363
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=5e-08 Score=69.98 Aligned_cols=47 Identities=23% Similarity=0.216 Sum_probs=31.0
Q ss_pred HHHHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 138 QVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 138 ~~~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
...+....++. .-....+.+...+. -+|++++..+|+++++|||...
T Consensus 130 A~~~Le~vgL~~~a~~~A~~LsyG~qR~--LEIArALa~~P~lLLLDEPaAG 179 (250)
T COG0411 130 ARELLEFVGLGELADRPAGNLSYGQQRR--LEIARALATQPKLLLLDEPAAG 179 (250)
T ss_pred HHHHHHHcCCchhhcchhhcCChhHhHH--HHHHHHHhcCCCEEEecCccCC
Confidence 34445444543 23334444433333 4599999999999999999998
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=75.55 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=39.4
Q ss_pred HHHHHHcCCcE--EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 139 VTFHRKKNLQY--YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 139 ~~~~~~~~~~~--~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.......++.- -.++.++|. ..+...|++++..+|.++++|||+.+ ||..+.
T Consensus 136 ~~~L~gLg~~~~~~~~~~LSGG--~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i 189 (530)
T COG0488 136 EEALLGLGFPDEDRPVSSLSGG--WRRRVALARALLEEPDLLLLDEPTNH-----LDLESI 189 (530)
T ss_pred HHHHhcCCCCcccCchhhcCHH--HHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHH
Confidence 34555566653 355666554 55567799999999999999999999 998865
No 365
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.57 E-value=6.5e-06 Score=63.94 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccceeE----------EEeeEEEEe-cCcEEEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGV----------EVHPLDFFT-NCGKIRFYC 66 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~l 66 (199)
..+=|+|+||..+|||||++||+..-. +.-+.+..|. ......+.+ ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346789999999999999999875211 0011111121 122233344 355789999
Q ss_pred EeCCCcc--------c---ccccc-ccc-----------------cc--CCcEEEEEEeCC----ChhhHhcHH-HHHHH
Q 029077 67 WDTAGQE--------K---FGGLR-DGY-----------------YI--HGQCAIIMFDVT----ARLTYKNVP-TWHRD 110 (199)
Q Consensus 67 ~D~~g~~--------~---~~~~~-~~~-----------------~~--~~d~~i~v~d~~----~~~s~~~~~-~~~~~ 110 (199)
.||.|.- . -+-.. .+| +. ..-++++.-|-+ .++++..+. +.+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9998721 0 00000 000 11 112333332322 234444433 45666
Q ss_pred HHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 111 l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
|... ++|++++.|-.+-..........++..+++.+++.+++.. -.-+++..-|.+.|.+-|
T Consensus 176 Lk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 176 LKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYEFP 237 (492)
T ss_pred HHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence 6666 8999999998877766666666788888999998887753 234555555556666544
No 366
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=2.6e-07 Score=63.34 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
....+++++|.+|+|||||+|.+...... ...+..+++......... ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKL-KVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccc-cccCCCCcccceEEEEec---CCEEEEECCC
Confidence 45688999999999999999997754321 122233444444444332 3588999998
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.55 E-value=7.9e-07 Score=60.90 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=55.3
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|++++|+|+.++.+.... ++........++|+++|+||+|+.......+.. .+.......++.+|+.+|.|++++.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 688999999887654432 222111112479999999999996532222222 23333455689999999999999999
Q ss_pred HHHHHH
Q 029077 166 YLARKL 171 (199)
Q Consensus 166 ~i~~~~ 171 (199)
.+.+..
T Consensus 79 ~i~~~~ 84 (155)
T cd01849 79 AFTKQT 84 (155)
T ss_pred HHHHHh
Confidence 887653
No 368
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8.1e-07 Score=67.58 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=91.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------ccccceeEEEeeEEEEe----------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDFFT---------- 57 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~---------- 57 (199)
-..+|++++|.-.+|||||+--|..+..+. ......|.+.....+.+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 346899999999999999997654432211 11122333322222222
Q ss_pred cCcEEEEEEEeCCCccccccccccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 58 NCGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
+...--+.++|.+|+.+|.......+. ..+...+|+++........ .+.+..+.. -++|+.++++|+|+.+++-.
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchhH
Confidence 122345789999999887655433322 3577888888876654332 122222222 29999999999998764211
Q ss_pred H--------------------------HH----HHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 136 A--------------------------KQ----VTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 136 ~--------------------------~~----~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
. +. .+.+...-.++|.+|..+|+|++-+...
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 1 11 1223333457889999999998865543
No 369
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.53 E-value=4.5e-07 Score=61.12 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=52.7
Q ss_pred ccccCCcEEEEEEeCCChhhHh--cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
..+..+|++++|+|++++.+.. .+..++... ..++|+++|+||+|+.+.....+.....+..+..++++|+.++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~ 83 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN 83 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC
Confidence 3467899999999998876544 333443322 25789999999999965433333345555666789999998875
Q ss_pred C
Q 029077 159 N 159 (199)
Q Consensus 159 ~ 159 (199)
+
T Consensus 84 ~ 84 (141)
T cd01857 84 A 84 (141)
T ss_pred c
Confidence 3
No 370
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.52 E-value=2.6e-07 Score=70.29 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=31.0
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...++...+. -.|++++..+|+++++|||+.+ +|+..+.
T Consensus 136 ~~~LS~G~~qr--l~la~aL~~~P~lllLDEPt~g-----LD~~~~~ 175 (306)
T PRK13537 136 VGELSGGMKRR--LTLARALVNDPDVLVLDEPTTG-----LDPQARH 175 (306)
T ss_pred hhhCCHHHHHH--HHHHHHHhCCCCEEEEeCCCcC-----CCHHHHH
Confidence 34455444444 5599999999999999999999 9988653
No 371
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=3.4e-06 Score=60.52 Aligned_cols=140 Identities=17% Similarity=0.244 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCC------c---cccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-------
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK------K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------- 76 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------- 76 (199)
.++|.|+|.+|.|||||+|.++...... . ...|...-.....+.-++...+++++||||-...-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 4799999999999999999977533211 1 11122222222233335556788999999933211
Q ss_pred c-------ccccc------------cc--CCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCC---
Q 029077 77 G-------LRDGY------------YI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--- 131 (199)
Q Consensus 77 ~-------~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~--- 131 (199)
. .+..| +. ..+++++.+..+- .++..+. .++..+. .-+.++-|.-|.|.--
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt---~vvNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEE 201 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh---hhheeeeeEeecccccHHH
Confidence 0 01111 22 3456666665543 3333222 2333332 2345666777999642
Q ss_pred cc-ccHHHHHHHHHcCCcEEEeccCC
Q 029077 132 RQ-VKAKQVTFHRKKNLQYYEISAKS 156 (199)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~~~~s~~~ 156 (199)
+. ..+....-...+++.+|.-.+.+
T Consensus 202 r~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 202 RSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHHHhcCcccccccccc
Confidence 21 22223345566778777765544
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5e-07 Score=74.03 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=85.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (199)
....-+|+++-...-|||||+..|+..+-. .+-..+.|++.+..-+....+++.++++|.||+-+|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 345568999999999999999998753220 112235667766666666667899999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCC
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D 128 (199)
.+......+-+|+++.++|+..+-.-+.... +++.. .+...++|.||+|
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence 9999999999999999999987654433222 22221 3667788899999
No 373
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.5e-06 Score=63.67 Aligned_cols=39 Identities=31% Similarity=0.301 Sum_probs=30.3
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 135 ~~LSgG~~q--rv~ia~al~~~p~llllDEPt~~-----LD~~~~~ 173 (235)
T cd03261 135 AELSGGMKK--RVALARALALDPELLLYDEPTAG-----LDPIASG 173 (235)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence 344444434 45699999999999999999999 9987653
No 374
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.51 E-value=7.9e-07 Score=63.00 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+..++.. ...-.|++++..+|.+.++|||+.+ +|...++
T Consensus 126 ~~LS~G~--~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 164 (190)
T TIGR01166 126 HCLSGGE--KKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGRE 164 (190)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 3444433 3446699999999999999999999 9987653
No 375
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.51 E-value=8.2e-07 Score=60.06 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.|++++..+|.+..+|||+.+ +|....
T Consensus 78 rv~laral~~~p~illlDEP~~~-----LD~~~~ 106 (144)
T cd03221 78 RLALAKLLLENPNLLLLDEPTNH-----LDLESI 106 (144)
T ss_pred HHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence 35589999999999999999999 887654
No 376
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=7e-07 Score=66.37 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=33.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
-+.++|.+-+. ..|+++++.+|++++.||++.+ +|++..+
T Consensus 139 P~qLSGGQKQR--VaIARALa~~P~iLL~DEaTSA-----LDP~TT~ 178 (339)
T COG1135 139 PAQLSGGQKQR--VAIARALANNPKILLCDEATSA-----LDPETTQ 178 (339)
T ss_pred chhcCcchhhH--HHHHHHHhcCCCEEEecCcccc-----CChHHHH
Confidence 46677665554 6799999999999999999999 9998654
No 377
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.6e-07 Score=71.09 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=99.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc--C------CCCC--------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT--G------EFEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~--~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
.+.-+|+++..-.+||||.-.|++. + .... ......|++..+.-+.++.+.++++++||||+-.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 4445899999999999999988663 1 1111 1123467788888888899999999999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ 148 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~ 148 (199)
|+-.....++--|+++.|||.+.+-.-+.+..|.+.-. .++|-..+.||+|.............-++.+..
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk---~~ip~~~finkmdk~~anfe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK---FKIPAHCFINKMDKLAANFENAVDSIEEKLGAK 185 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc---cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence 99888889999999999999998766677777775432 278999999999986543332222333344443
No 378
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.50 E-value=1.8e-07 Score=71.49 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=33.6
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
...-..+.++|.+- ...+|+++++.+|.++++|||..+ +|...
T Consensus 129 ~~~R~p~qLSGGQq--QRVALARAL~~~P~vLLLDEPlSa-----LD~kL 171 (352)
T COG3842 129 FADRKPHQLSGGQQ--QRVALARALVPEPKVLLLDEPLSA-----LDAKL 171 (352)
T ss_pred hhhhChhhhChHHH--HHHHHHHHhhcCcchhhhcCcccc-----hhHHH
Confidence 33445677766544 457899999999999999999999 88653
No 379
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.50 E-value=7.9e-07 Score=67.62 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=31.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...+|...+ .-.|++++..+|.++++|||+.+ +|+...+
T Consensus 122 ~~~LSgG~~q--rv~la~al~~~p~lllLDEPt~g-----LD~~~~~ 161 (302)
T TIGR01188 122 VGTYSGGMRR--RLDIAASLIHQPDVLFLDEPTTG-----LDPRTRR 161 (302)
T ss_pred hhhCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence 3455554444 45699999999999999999999 9987653
No 380
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.49 E-value=8.5e-07 Score=60.88 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=57.2
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHH-HHcCCcEEEeccCCCCCh
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-RKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~v 160 (199)
.+..+|.+++|+|++++.... ...+...+.....++|+++|.||+|+.+........... +......+.+|++.+.|+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~ 83 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK 83 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence 357899999999998864221 112222222223358999999999996543222222222 222233577999999999
Q ss_pred HHHHHHHHHHH
Q 029077 161 EKPFLYLARKL 171 (199)
Q Consensus 161 ~~~~~~i~~~~ 171 (199)
+++.+.+...+
T Consensus 84 ~~L~~~l~~~~ 94 (157)
T cd01858 84 GSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 381
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.49 E-value=2.1e-06 Score=61.63 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 140 ~qr~~laral~~~p~llllDEPt~~-----LD~~~~~ 171 (206)
T TIGR03608 140 QQRVALARAILKDPPLILADEPTGS-----LDPKNRD 171 (206)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHH
Confidence 3445699999999999999999999 9987653
No 382
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.48 E-value=2.1e-06 Score=61.96 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=30.3
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 129 ~~LSgG~~q--rl~la~al~~~p~~lllDEPt~~-----LD~~~~~ 167 (213)
T cd03259 129 HELSGGQQQ--RVALARALAREPSLLLLDEPLSA-----LDAKLRE 167 (213)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 345544434 45599999999999999999999 9987653
No 383
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.48 E-value=1.4e-07 Score=78.68 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+|.+-+ .-.|++++..+|+++.+|||+.+ +|...++
T Consensus 610 LSGGQrQ--rlalARaLl~~P~ILlLDEaTSa-----LD~~sE~ 646 (709)
T COG2274 610 LSGGQRQ--RLALARALLSKPKILLLDEATSA-----LDPETEA 646 (709)
T ss_pred CCHHHHH--HHHHHHHhccCCCEEEEeCcccc-----cCHhHHH
Confidence 3444334 45699999999999999999999 9987654
No 384
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.5e-06 Score=68.22 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=80.9
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
...++.+-++|+|++|+|||||+++|+.. +... |..-...+ .....++...+++..+|. ... .......-+|
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr-~tk~---ti~~i~GP-iTvvsgK~RRiTflEcp~--Dl~-~miDvaKIaD 135 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR-FTKQ---TIDEIRGP-ITVVSGKTRRITFLECPS--DLH-QMIDVAKIAD 135 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHH-HHHh---hhhccCCc-eEEeecceeEEEEEeChH--HHH-HHHhHHHhhh
Confidence 34477889999999999999999986632 2111 11100111 112345778899999883 222 2234457799
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccHHHH-------HHHHH-cCCcEEEeccCC
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV-------TFHRK-KNLQYYEISAKS 156 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~~~~-------~~~~~-~~~~~~~~s~~~ 156 (199)
.+++++|..-+-..+ ...+++.+... ..| ++.|+|+.|+-......... -|-.. .|+.+|..|...
T Consensus 136 LVlLlIdgnfGfEME-TmEFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 136 LVLLLIDGNFGFEME-TMEFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eeEEEeccccCceeh-HHHHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999999987542222 23344433332 555 67888999997644332211 11111 356777777653
No 385
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=5.8e-07 Score=61.14 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
|=+.....|++.+.-.|.++++||++.+ +|...
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~n 168 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSA-----LDESN 168 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhh-----cChhh
Confidence 3355567788888889999999999988 77654
No 386
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.47 E-value=5.3e-07 Score=63.46 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 111 qrl~la~al~~~p~llllDEP~~~-----LD~~~~~ 141 (182)
T cd03215 111 QKVVLARWLARDPRVLILDEPTRG-----VDVGAKA 141 (182)
T ss_pred HHHHHHHHHccCCCEEEECCCCcC-----CCHHHHH
Confidence 345699999999999999999999 9987653
No 387
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.47 E-value=2.7e-06 Score=62.24 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|.++++|||+.+ +|...++
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~ 170 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQ 170 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence 3445699999999999999999999 9987653
No 388
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.47 E-value=2e-07 Score=63.59 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
-.++++|++|||||||+|.|+...... ....-..++.....+.+... ..++||||...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCc
Confidence 478999999999999999987542211 11111223333333333222 25689998654
No 389
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.47 E-value=1.5e-06 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 130 ~~LS~G~~q--r~~la~al~~~p~llllDEPt~~-----LD~~~~~ 168 (220)
T cd03265 130 KTYSGGMRR--RLEIARSLVHRPEVLFLDEPTIG-----LDPQTRA 168 (220)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccC-----CCHHHHH
Confidence 445544433 45699999999999999999999 9987653
No 390
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.46 E-value=1.2e-06 Score=65.81 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=61.2
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
...+..+|++++|+|+.++.+.... .+.. ...++|+++|.||+|+.+........+..+..+..++.+|+.++.|
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~---~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDE---IRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh--hHHH---HHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 4557899999999999876543321 1111 1237899999999999643222222233333456789999999999
Q ss_pred hHHHHHHHHHHHhC
Q 029077 160 FEKPFLYLARKLAG 173 (199)
Q Consensus 160 v~~~~~~i~~~~~~ 173 (199)
++++.+.+.+.+.+
T Consensus 91 i~~L~~~i~~~~~~ 104 (276)
T TIGR03596 91 VKKIIKAAKKLLKE 104 (276)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877643
No 391
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.46 E-value=5.4e-07 Score=62.25 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=28.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.++...+ .-.+++++..+|.+.++|||+.+ +|....
T Consensus 83 LS~G~~q--rl~laral~~~p~illlDEP~~~-----LD~~~~ 118 (163)
T cd03216 83 LSVGERQ--MVEIARALARNARLLILDEPTAA-----LTPAEV 118 (163)
T ss_pred cCHHHHH--HHHHHHHHhcCCCEEEEECCCcC-----CCHHHH
Confidence 4444333 45599999999999999999999 887764
No 392
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=2.3e-05 Score=52.99 Aligned_cols=58 Identities=29% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (199)
....+||.+.|++|+||||++.++....-...+ +.| -+....+.-+++-.-|.+.|+.
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeecCCeEeeeEEEEcc
Confidence 356799999999999999999885522111111 111 2333344455666778888876
No 393
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.45 E-value=5.4e-07 Score=68.68 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=93.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce------------e--EEEeeEEEEe-----------------
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------------G--VEVHPLDFFT----------------- 57 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~------------~--~~~~~~~~~~----------------- 57 (199)
..+.++.|++.|....|||||+-.|..+......-.+. | .+.+...+-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 35778999999999999999998776655432111110 1 0111111111
Q ss_pred ----cCcEEEEEEEeCCCcccccc-ccccc-ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 58 ----NCGKIRFYCWDTAGQEKFGG-LRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 58 ----~~~~~~~~l~D~~g~~~~~~-~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
+..+-.+.+.|+.|++.|-. ..+.. -.+.|..++++.+++.-+-..-... .-.. .-..|++++.||+|+..
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL-gi~~--a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL-GIAL--AMELPVIVVVTKIDMVP 269 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh-hhhh--hhcCCEEEEEEecccCc
Confidence 12234567899999987533 23333 4678999999999887542221111 1111 13899999999999865
Q ss_pred cccc----HHHHHHHH----------------------H---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 132 RQVK----AKQVTFHR----------------------K---KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 132 ~~~~----~~~~~~~~----------------------~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
.... ++...+.+ + .-.|++.+|+.+|.|++-+.+ +...+.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp 338 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLP 338 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCC
Confidence 3221 11111111 1 124799999999999875443 333333
No 394
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.45 E-value=2.1e-06 Score=63.50 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=29.9
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++...+ .-.|++++..+|.++++|||+.+ +|....
T Consensus 143 ~~LS~Gq~q--rv~la~al~~~p~lllLDEPt~~-----LD~~~~ 180 (250)
T PRK11264 143 RRLSGGQQQ--RVAIARALAMRPEVILFDEPTSA-----LDPELV 180 (250)
T ss_pred hhCChHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHH
Confidence 445544444 45699999999999999999999 998764
No 395
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.45 E-value=3.3e-06 Score=61.95 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...-.|++++..+|.++++|||+.+ +|...++
T Consensus 138 ~qrl~laral~~~p~llllDEP~~~-----LD~~~~~ 169 (236)
T TIGR03864 138 RRRVEIARALLHRPALLLLDEPTVG-----LDPASRA 169 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHH
Confidence 3445699999999999999999999 9987653
No 396
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.45 E-value=2.5e-06 Score=65.87 Aligned_cols=39 Identities=33% Similarity=0.368 Sum_probs=30.3
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++... ..-.|++++..+|+++++|||+.+ +|+..+.
T Consensus 171 ~~LS~G~k--qrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~ 209 (340)
T PRK13536 171 SDLSGGMK--RRLTLARALINDPQLLILDEPTTG-----LDPHARH 209 (340)
T ss_pred hhCCHHHH--HHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHH
Confidence 34444333 345699999999999999999999 9988653
No 397
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=8.6e-07 Score=63.63 Aligned_cols=40 Identities=30% Similarity=0.303 Sum_probs=31.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
..-|.++|.=.+ ...+++++.-+|++.++|||+.. +|+-.
T Consensus 141 ~~PsELSGGM~K--RvaLARAialdPell~~DEPtsG-----LDPI~ 180 (263)
T COG1127 141 LYPSELSGGMRK--RVALARAIALDPELLFLDEPTSG-----LDPIS 180 (263)
T ss_pred hCchhhcchHHH--HHHHHHHHhcCCCEEEecCCCCC-----CCcch
Confidence 344777764334 47799999999999999999999 88754
No 398
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.45 E-value=2e-06 Score=62.17 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 175 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSR 175 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHH
Confidence 34456699999999999999999999 9987653
No 399
>PRK12288 GTPase RsgA; Reviewed
Probab=98.44 E-value=6.2e-07 Score=69.13 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC--cc----ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077 16 LVIVGDGGTGKTTFVKRHLTGEFEK--KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (199)
++|+|.+|||||||+|+|+...... .. .....++.....+.+.... .++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 7899999999999999987543211 11 1112233333333333222 48999996653
No 400
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.44 E-value=1.3e-06 Score=65.65 Aligned_cols=86 Identities=19% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe---------------cCcEEEEEEEeCCCcccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---------------NCGKIRFYCWDTAGQEKF 75 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~~~ 75 (199)
.+.++++++|.+++|||||+|.+..........|...++-..-++.+ ......++++|++|.-..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 57789999999999999999997765554443333222211112211 123467899999985432
Q ss_pred ----ccc---ccccccCCcEEEEEEeCC
Q 029077 76 ----GGL---RDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 76 ----~~~---~~~~~~~~d~~i~v~d~~ 96 (199)
+.+ ....++.+|+++.|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 222 233467899999988765
No 401
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=2.1e-06 Score=61.83 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.4
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++...+ .-.|++++..+|++.++|||+.+ +|...++
T Consensus 128 ~LS~G~~q--rl~la~al~~~p~~lllDEP~~~-----LD~~~~~ 165 (210)
T cd03269 128 ELSKGNQQ--KVQFIAAVIHDPELLILDEPFSG-----LDPVNVE 165 (210)
T ss_pred hCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence 34443333 45599999999999999999999 9987653
No 402
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.43 E-value=4.7e-06 Score=60.13 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=30.1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++.. .-.-.+++++..+|.+.++|||+.+ +|...+.
T Consensus 129 ~~LS~G~--~qr~~laral~~~p~llllDEPt~~-----LD~~~~~ 167 (213)
T cd03301 129 KQLSGGQ--RQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRV 167 (213)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 3444443 3445699999999999999999999 9987653
No 403
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.43 E-value=2.3e-06 Score=61.75 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.5
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++...+ .-.|++++..+|+++++|||+.+ +|...+
T Consensus 134 ~~LS~G~~q--rv~la~al~~~p~llllDEP~~~-----LD~~~~ 171 (213)
T cd03262 134 AQLSGGQQQ--RVAIARALAMNPKVMLFDEPTSA-----LDPELV 171 (213)
T ss_pred cccCHHHHH--HHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence 334444333 45699999999999999999999 998765
No 404
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.43 E-value=2.7e-06 Score=61.59 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|... -.-.|++++..+|.++++|||+.+ +|....+
T Consensus 139 ~~LS~G~~--qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~ 177 (218)
T cd03255 139 SELSGGQQ--QRVAIARALANDPKIILADEPTGN-----LDSETGK 177 (218)
T ss_pred hhcCHHHH--HHHHHHHHHccCCCEEEEcCCccc-----CCHHHHH
Confidence 34444433 345699999999999999999999 9987653
No 405
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.5e-06 Score=66.74 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=31.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++|...+. -.|++++..+|+++++|||+.+ +|...+.
T Consensus 151 p~~LSgGq~QR--v~iArAL~~~P~llilDEPts~-----LD~~~~~ 190 (326)
T PRK11022 151 PHQLSGGMSQR--VMIAMAIACRPKLLIADEPTTA-----LDVTIQA 190 (326)
T ss_pred chhCCHHHHHH--HHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence 34555554444 5599999999999999999999 9987654
No 406
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.43 E-value=2.4e-06 Score=61.71 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|++.++|||+.+ +|...++
T Consensus 141 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 173 (214)
T cd03292 141 EQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTW 173 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHH
Confidence 34456699999999999999999999 9987653
No 407
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.42 E-value=3e-07 Score=66.95 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=34.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
-.....++|...+. -.|+..+.-+|+++.+|||+.. +|....
T Consensus 133 ~r~p~~LSGGqkqR--vaIA~vLa~~P~iliLDEPta~-----LD~~~~ 174 (235)
T COG1122 133 DRPPFNLSGGQKQR--VAIAGVLAMGPEILLLDEPTAG-----LDPKGR 174 (235)
T ss_pred cCCccccCCcceee--HHhhHHHHcCCCEEEEcCCCCC-----CCHHHH
Confidence 34456677766665 5699999999999999999999 998764
No 408
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=5.8e-07 Score=67.30 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.5
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 135 ~~LSgG~~q--rl~laraL~~~p~lllLDEPt~~-----LD~~~~~ 173 (271)
T PRK13638 135 QCLSHGQKK--RVAIAGALVLQARYLLLDEPTAG-----LDPAGRT 173 (271)
T ss_pred hhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence 445544444 45699999999999999999999 9987653
No 409
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.42 E-value=2.3e-06 Score=65.08 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=31.4
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++..++...+. -.+++++..+|+++++|||+.+ +|...++
T Consensus 131 ~~~LS~G~~qr--v~la~al~~~p~lliLDEPt~g-----LD~~~~~ 170 (301)
T TIGR03522 131 IGQLSKGYRQR--VGLAQALIHDPKVLILDEPTTG-----LDPNQLV 170 (301)
T ss_pred hhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 34555544444 5599999999999999999999 9988653
No 410
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.42 E-value=4.5e-06 Score=59.87 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|.++++|||+.+ +|....+
T Consensus 131 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 163 (205)
T cd03226 131 QKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNME 163 (205)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHH
Confidence 33446699999999999999999999 9987653
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.42 E-value=3.5e-06 Score=60.84 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.9
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..+|.. .-.-.|++++..+|.++++|||+.+ +|....+
T Consensus 137 ~LS~G~--~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~ 174 (214)
T TIGR02673 137 QLSGGE--QQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSE 174 (214)
T ss_pred hCCHHH--HHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHH
Confidence 444433 4446699999999999999999999 9987653
No 412
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.42 E-value=2.8e-06 Score=61.74 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCC---ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------ 78 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------ 78 (199)
..+..-|+|+|++++|||+|+|.++.. .+.. ....|.|+-........ +.+..+.++||+|.......
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 455678999999999999999998876 4421 12223443322222211 24578999999996543221
Q ss_pred ccccccC--CcEEEEEEeCCC
Q 029077 79 RDGYYIH--GQCAIIMFDVTA 97 (199)
Q Consensus 79 ~~~~~~~--~d~~i~v~d~~~ 97 (199)
....+.. ++.+|+..+...
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 1112223 777777766553
No 413
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=2.2e-06 Score=60.14 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
-.-.+++++..+|++..+|||+.+ +|...++
T Consensus 107 qr~~la~al~~~p~llilDEP~~~-----LD~~~~~ 137 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSA-----LDPITRR 137 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHH
Confidence 345699999999999999999999 9987653
No 414
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.41 E-value=1.7e-06 Score=66.69 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=32.0
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|.++++|||+.+ +|....+
T Consensus 138 ~~~LSgGqkQ--RV~IARAL~~~P~iLLlDEPts~-----LD~~t~~ 177 (343)
T TIGR02314 138 PSNLSGGQKQ--RVAIARALASNPKVLLCDEATSA-----LDPATTQ 177 (343)
T ss_pred hhhCCHHHHH--HHHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence 4556655444 46699999999999999999999 9987653
No 415
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.41 E-value=4e-06 Score=60.12 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=29.8
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+..++... -.-.|++++..+|++.++|||+.+ +|....
T Consensus 128 ~~LS~G~~--qrl~la~al~~~p~llllDEPt~~-----LD~~~~ 165 (204)
T PRK13538 128 RQLSAGQQ--RRVALARLWLTRAPLWILDEPFTA-----IDKQGV 165 (204)
T ss_pred hhcCHHHH--HHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHH
Confidence 44444433 446699999999999999999999 998764
No 416
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.41 E-value=1.9e-07 Score=67.10 Aligned_cols=28 Identities=39% Similarity=0.644 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
+..|+++++.+|+++.+|||+.. +|+..
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G-----LDl~~ 206 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG-----LDLIA 206 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc-----CChHH
Confidence 45599999999999999999999 88754
No 417
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.41 E-value=3e-06 Score=64.62 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCC---------c-c-----------ccceeEEEeeEEEE-------------e
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK---------K-Y-----------EPTIGVEVHPLDFF-------------T 57 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~---------~-~-----------~~~~~~~~~~~~~~-------------~ 57 (199)
+.-.|+++|++|+||||++..+....... . + ....+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45688999999999999998755311000 0 0 00111111111000 0
Q ss_pred cCcEEEEEEEeCCCccccccc----cccc--------ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEe
Q 029077 58 NCGKIRFYCWDTAGQEKFGGL----RDGY--------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125 (199)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~ 125 (199)
....+.+.++||+|....... ...+ -...+..++|.|++.... .+.. ...+... -.+.-+|.|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~-a~~f~~~--~~~~giIlT 267 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQ-AKAFHEA--VGLTGIILT 267 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHH-HHHHHhh--CCCCEEEEE
Confidence 124578899999996542221 1111 124678899999985432 1221 1222111 123457789
Q ss_pred CCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 126 K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
|.|.... .......+...+.|+.+++ +|.+++++
T Consensus 268 KlD~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 268 KLDGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 9995433 3344566677789988887 77777654
No 418
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.41 E-value=4e-06 Score=61.48 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.+++++..+|.++++|||+.+ +|....+
T Consensus 142 ~~LSgG~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~~ 180 (236)
T cd03219 142 GELSYGQQR--RLEIARALATDPKLLLLDEPAAG-----LNPEETE 180 (236)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 344444444 45699999999999999999999 9987653
No 419
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.41 E-value=2.5e-06 Score=61.80 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|.++++|||+.+ +|....
T Consensus 141 ~~qrv~laral~~~p~illlDEPt~~-----LD~~~~ 172 (218)
T cd03266 141 MRQKVAIARALVHDPPVLLLDEPTTG-----LDVMAT 172 (218)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHH
Confidence 34456699999999999999999999 998765
No 420
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=6.1e-07 Score=68.65 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|.++++|||+.+ +|..+++
T Consensus 181 qkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~ 213 (320)
T PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEH 213 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHH
Confidence 44557799999999999999999999 9987653
No 421
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.41 E-value=1.2e-06 Score=67.63 Aligned_cols=83 Identities=17% Similarity=-0.028 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CC-ccc-----cceeEEEeeEEE------Ee---cCcEEEEEEEeCCCcccc--
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYE-----PTIGVEVHPLDF------FT---NCGKIRFYCWDTAGQEKF-- 75 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~-~~-~~~-----~~~~~~~~~~~~------~~---~~~~~~~~l~D~~g~~~~-- 75 (199)
++++++|.+++|||||++.+..... .. .|. |..|+-..+... .+ ......+.+.|+||....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999775543 22 221 122211111000 00 011246788999996442
Q ss_pred -----cccccccccCCcEEEEEEeCC
Q 029077 76 -----GGLRDGYYIHGQCAIIMFDVT 96 (199)
Q Consensus 76 -----~~~~~~~~~~~d~~i~v~d~~ 96 (199)
.......++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 112334578999999999975
No 422
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.41 E-value=4.3e-06 Score=62.55 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.++|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 142 ~~LSgGq~q--rv~laral~~~p~lllLDEPt~~-----LD~~~~~ 180 (269)
T PRK11831 142 SELSGGMAR--RAALARAIALEPDLIMFDEPFVG-----QDPITMG 180 (269)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence 445544444 45699999999999999999999 9987654
No 423
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.41 E-value=3.5e-06 Score=61.68 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|.++++|||+.+ +|...++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~ 177 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSA-----LDPETTQ 177 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHH
Confidence 3446699999999999999999999 9987653
No 424
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.40 E-value=7.9e-06 Score=59.05 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...-.+++++..+|.++++|||+.+ +|....+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 174 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGIT 174 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence 44556799999999999999999999 9987653
No 425
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.40 E-value=6.6e-06 Score=58.68 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|++.++|||+.+ +|...++
T Consensus 133 ~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~ 164 (198)
T TIGR01189 133 QRRLALARLWLSRAPLWILDEPTTA-----LDKAGVA 164 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence 3445699999999999999999999 9987653
No 426
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.40 E-value=6.2e-06 Score=61.28 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|.++++|||+.+ +|....+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 189 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVG 189 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence 34456699999999999999999999 9987653
No 427
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.40 E-value=2.6e-06 Score=61.41 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=30.5
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++.. .-.-.|++++..+|.+.++|||+.+ +|...++
T Consensus 129 ~~LS~G~--~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~ 167 (211)
T cd03264 129 GSLSGGM--RRRVGIAQALVGDPSILIVDEPTAG-----LDPEERI 167 (211)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 3444443 3446699999999999999999999 9987654
No 428
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.40 E-value=4.1e-06 Score=60.76 Aligned_cols=32 Identities=31% Similarity=0.501 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|.++++|||+.+ +|....+
T Consensus 139 ~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~ 170 (220)
T cd03263 139 KRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRR 170 (220)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHH
Confidence 3446699999999999999999999 9987653
No 429
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=64.42 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=31.7
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+. -.|++++.-+|.+...|||..+ +|...|.
T Consensus 108 helSGGQrQR--i~IARALal~P~liV~DEpvSa-----LDvSiqa 146 (268)
T COG4608 108 HELSGGQRQR--IGIARALALNPKLIVADEPVSA-----LDVSVQA 146 (268)
T ss_pred cccCchhhhh--HHHHHHHhhCCcEEEecCchhh-----cchhHHH
Confidence 4455666666 4499999999999999999999 9987664
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=2.8e-06 Score=60.79 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...-.|++++..+|+++++|||+.+ +|...++
T Consensus 124 ~qrl~laral~~~p~llllDEPt~~-----LD~~~~~ 155 (202)
T cd03233 124 RKRVSIAEALVSRASVLCWDNSTRG-----LDSSTAL 155 (202)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHH
Confidence 3345699999999999999999999 9987654
No 431
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=3.6e-06 Score=65.11 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.++|...+ .-.|++++..+|.++++|||+.+ +|....
T Consensus 139 ~~LSgGq~q--Rv~lAraL~~~p~iLlLDEPts~-----LD~~~~ 176 (343)
T PRK11153 139 AQLSGGQKQ--RVAIARALASNPKVLLCDEATSA-----LDPATT 176 (343)
T ss_pred hhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence 445554444 46699999999999999999999 998765
No 432
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=6.6e-07 Score=68.03 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|.++++|||+.+ +|...++
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~ 202 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVK 202 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence 34456799999999999999999999 9987653
No 433
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.38 E-value=4.6e-06 Score=63.49 Aligned_cols=39 Identities=31% Similarity=0.351 Sum_probs=30.5
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|... ..-.|++++..+|+++++|||+.+ +|....+
T Consensus 134 ~~LSgG~~--qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~ 172 (303)
T TIGR01288 134 ALLSGGMK--RRLTLARALINDPQLLILDEPTTG-----LDPHARH 172 (303)
T ss_pred hhCCHHHH--HHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence 44544433 345699999999999999999999 9987653
No 434
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=1.8e-06 Score=63.70 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=30.1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.++|...+ .-.|++++..+|.++++|||+.+ +|....
T Consensus 114 ~~LSgGe~q--rv~iaraL~~~p~llllDEPt~~-----LD~~~~ 151 (246)
T cd03237 114 PELSGGELQ--RVAIAACLSKDADIYLLDEPSAY-----LDVEQR 151 (246)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 445554444 45699999999999999999999 998765
No 435
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.38 E-value=3e-06 Score=59.15 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 102 qrv~laral~~~p~illlDEPt~~-----LD~~~~~ 132 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSG-----LDPESRR 132 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence 345699999999999999999999 9987653
No 436
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.38 E-value=4.1e-06 Score=60.79 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...-.|++++..+|.++.+|||+.. +|...++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~ 178 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGR 178 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHH
Confidence 34456699999999999999999999 9988753
No 437
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.38 E-value=1.8e-06 Score=62.73 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=30.1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++...+ .-.|++++..+|.++++|||+.+ +|....+
T Consensus 131 ~~LS~G~~q--rv~laral~~~p~llllDEPt~~-----LD~~~~~ 169 (222)
T cd03224 131 GTLSGGEQQ--MLAIARALMSRPKLLLLDEPSEG-----LAPKIVE 169 (222)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEECCCccc-----CCHHHHH
Confidence 334444333 45699999999999999999999 9987653
No 438
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.38 E-value=1.5e-06 Score=62.44 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++... -.-.|++++..+|.++++|||+.+ +|...++
T Consensus 125 ~~LS~G~~--qrv~la~al~~~p~llllDEPt~~-----LD~~~~~ 163 (208)
T cd03268 125 KGFSLGMK--QRLGIALALLGNPDLLILDEPTNG-----LDPDGIK 163 (208)
T ss_pred hhCCHHHH--HHHHHHHHHhcCCCEEEECCCccc-----CCHHHHH
Confidence 34444433 345699999999999999999999 9987653
No 439
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.2e-07 Score=67.88 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=71.0
Q ss_pred EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----
Q 029077 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---- 138 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~---- 138 (199)
.+.+.|+||++..-..+..-..-.|+.++++...+...--...+.+..+... .-+.++++-||.|+-.+....+.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~~A~eq~e~I 204 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKESQALEQHEQI 204 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHHHHHHHHHHH
Confidence 5678899998875554444445567777777765432211122222222111 24667888899999765443332
Q ss_pred HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077 139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
..|.+. .+.+++.+||.-+.|++-+.+.|.+.+...
T Consensus 205 ~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 205 QKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred HHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 233332 357899999999999999999999988643
No 440
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.37 E-value=4e-06 Score=61.69 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++... -.-.|++++..+|.++++|||+.+ +|...++
T Consensus 136 ~~LS~G~~--qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 174 (241)
T PRK10895 136 QSLSGGER--RRVEIARALAANPKFILLDEPFAG-----VDPISVI 174 (241)
T ss_pred hhCCHHHH--HHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 34444433 345699999999999999999999 9987653
No 441
>PRK10908 cell division protein FtsE; Provisional
Probab=98.37 E-value=5.6e-06 Score=60.12 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++...|+++++|||+.+ +|...++
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~ 174 (222)
T PRK10908 142 EQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSE 174 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHH
Confidence 34456699999999999999999999 9987653
No 442
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.37 E-value=6.1e-06 Score=59.91 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccccCC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG 86 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 86 (199)
-||.++|-+.+||||++..+. +.+ .+.....+++...+.........++++.|.||.-+. ........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~-g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT-GTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhc-CCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 489999999999999999854 333 333344555555655555566788999999984321 12234557889
Q ss_pred cEEEEEEeCCChhhHh
Q 029077 87 QCAIIMFDVTARLTYK 102 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~ 102 (199)
+.+++|.|+..+-+..
T Consensus 138 nli~~vld~~kp~~hk 153 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHK 153 (358)
T ss_pred cEEEEEeeccCcccHH
Confidence 9999999988765443
No 443
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.37 E-value=6.5e-06 Score=61.46 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+...-.|++++..+|.++++|||+.+ +|...+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~-----LD~~~~ 186 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQ 186 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 34456699999999999999999999 998764
No 444
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=5.3e-06 Score=61.07 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.-.|++++..+|.++++|||+.+ +|....
T Consensus 141 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~ 171 (242)
T cd03295 141 QQRVGVARALAADPPLLLMDEPFGA-----LDPITR 171 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccc-----CCHHHH
Confidence 3445699999999999999999999 988764
No 445
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.36 E-value=5.5e-07 Score=65.24 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=29.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 195 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~ 195 (199)
-+.++|..-+ ...+++++...|.+.++|||+.+ +|+-
T Consensus 133 P~eLSGGQQQ--RVGv~RALAadP~ilLMDEPFgA-----LDpI 169 (309)
T COG1125 133 PHELSGGQQQ--RVGVARALAADPPILLMDEPFGA-----LDPI 169 (309)
T ss_pred chhcCcchhh--HHHHHHHHhcCCCeEeecCCccc-----cChh
Confidence 4566665444 46799999999999999999999 7763
No 446
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=3.6e-06 Score=65.34 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=30.7
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|.. .-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 133 ~~LSgGq--~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~ 171 (356)
T PRK11650 133 RELSGGQ--RQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRV 171 (356)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence 3444443 4457799999999999999999999 9987653
No 447
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.36 E-value=1.9e-06 Score=62.12 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+..+|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 133 ~~LSgG~~q--rv~laral~~~p~llllDEPt~~-----LD~~~~~ 171 (211)
T cd03225 133 FTLSGGQKQ--RVAIAGVLAMDPDILLLDEPTAG-----LDPAGRR 171 (211)
T ss_pred ccCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 445544444 45699999999999999999999 9987653
No 448
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=61.58 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
...|+++++++|.++.+|||+.. +|.-.
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sG-----LDi~~ 168 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSG-----LDIRT 168 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCC-----ccHHH
Confidence 46799999999999999999999 88743
No 449
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.36 E-value=2.1e-06 Score=62.66 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|...+ .-.|++++..+|.+.++|||+.+ +|...++
T Consensus 130 ~~LS~G~~q--rv~la~al~~~p~illlDEPt~~-----LD~~~~~ 168 (230)
T TIGR03410 130 GDLSGGQQQ--QLAIARALVTRPKLLLLDEPTEG-----IQPSIIK 168 (230)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence 344444434 46699999999999999999999 9987653
No 450
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.36 E-value=2.7e-06 Score=58.73 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=29.7
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
..++|.. .-..++++.++...-++++|||+.+ +|++.
T Consensus 128 ~~LSGGq--RQRvALARclvR~~PilLLDEPFsA-----LdP~L 164 (231)
T COG3840 128 GELSGGQ--RQRVALARCLVREQPILLLDEPFSA-----LDPAL 164 (231)
T ss_pred cccCchH--HHHHHHHHHHhccCCeEEecCchhh-----cCHHH
Confidence 4455544 4457899999999999999999999 88864
No 451
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.1e-06 Score=59.02 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=95.9
Q ss_pred eEEEEEcCCCC--CHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCcccccccccccccCCcEE
Q 029077 14 FKLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 14 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
--++|+|.+|+ ||-+|+.+|....+.........+.++.+.+...+. ++.+.+..... +.+-.. ........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lpn-~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLPN-AEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccCC-cccccceeeE
Confidence 45789999999 999999998877776665555555666655533222 23333332221 111111 2223456788
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------------------------------
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR------------------------------------- 132 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~------------------------------------- 132 (199)
+++||.+....+..+..|+..-....-+ -++.+|||.|....
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999999999899899998743222111 13456788884210
Q ss_pred ---------cccHHHHHHHHHcCCcEEEeccCC------------CCChHHHHHHHHHHHh
Q 029077 133 ---------QVKAKQVTFHRKKNLQYYEISAKS------------NYNFEKPFLYLARKLA 172 (199)
Q Consensus 133 ---------~~~~~~~~~~~~~~~~~~~~s~~~------------~~~v~~~~~~i~~~~~ 172 (199)
.+.....++|.++++.+++.++.. ..|++.+|.++...+.
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 011234578889999999987732 2467787777765543
No 452
>PRK13796 GTPase YqeH; Provisional
Probab=98.36 E-value=8.1e-07 Score=69.16 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
.++.++|.+|||||||+|+|+..... ....+..|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999998743211 113345666766666655433 3689999963
No 453
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.36 E-value=5.7e-06 Score=64.62 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..++|.. .-.-.|++++..+|+++++|||+.+ +|....
T Consensus 132 ~~LSgGq--~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~ 169 (369)
T PRK11000 132 KALSGGQ--RQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALR 169 (369)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 3455443 4446699999999999999999999 998764
No 454
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=1.3e-06 Score=65.97 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|... -.-.|++++..+|.++++|||+.+ +|...++
T Consensus 143 ~~LSgGq~--qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~ 181 (287)
T PRK13637 143 FELSGGQK--RRVAIAGVVAMEPKILILDEPTAG-----LDPKGRD 181 (287)
T ss_pred ccCCHHHH--HHHHHHHHHHcCCCEEEEECCccC-----CCHHHHH
Confidence 44544443 446699999999999999999999 9987653
No 455
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.35 E-value=2.9e-06 Score=64.01 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=61.6
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
...+..+|++++|+|+.++.+... .++. ....++|+++|.||.|+.+........+..+..+..++.+|+.++.|
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~---~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMID---KIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHH---HHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence 445788999999999987654332 1111 22237899999999999653222222333344467789999999999
Q ss_pred hHHHHHHHHHHHhC
Q 029077 160 FEKPFLYLARKLAG 173 (199)
Q Consensus 160 v~~~~~~i~~~~~~ 173 (199)
++++.+.+.+.+.+
T Consensus 94 i~~L~~~l~~~l~~ 107 (287)
T PRK09563 94 VKKILKAAKKLLKE 107 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777643
No 456
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=3.5e-06 Score=64.69 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=30.4
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.++|.. .....|++++..+|+++++|||+.+ +|...++
T Consensus 154 ~LSgGq--~QRv~iArAL~~~P~lLilDEPts~-----LD~~~~~ 191 (327)
T PRK11308 154 MFSGGQ--RQRIAIARALMLDPDVVVADEPVSA-----LDVSVQA 191 (327)
T ss_pred cCCHHH--HHHHHHHHHHHcCCCEEEEECCCcc-----CCHHHHH
Confidence 444443 4456699999999999999999999 9987764
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=6.6e-06 Score=60.21 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|....+
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~ 182 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGN-----LDARNAD 182 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence 34446699999999999999999999 9987653
No 458
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=5.6e-06 Score=60.94 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|.++.+|||+.+ +|...++
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~ 178 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITA 178 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHH
Confidence 34446699999999999999999999 9987653
No 459
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.34 E-value=8.8e-06 Score=60.12 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.-.|++++..+|++.++|||+.+ +|...+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~ 180 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSA-----LDPIAT 180 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 3446699999999999999999999 998765
No 460
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4.7e-06 Score=62.89 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=30.5
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|.. .-...|++++..+|.++++|||+.+ +|...+.
T Consensus 144 ~~LSgGq--~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~ 182 (286)
T PRK13646 144 FQMSGGQ--MRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKR 182 (286)
T ss_pred ccCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHH
Confidence 3444443 3456799999999999999999999 9987653
No 461
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.34 E-value=4.3e-06 Score=65.06 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=30.1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..++|. +.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 136 ~~LSgG--q~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r 173 (362)
T TIGR03258 136 AQLSGG--MQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIR 173 (362)
T ss_pred hhCCHH--HHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHH
Confidence 344443 44456799999999999999999999 998754
No 462
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.34 E-value=1.7e-06 Score=60.44 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~ 133 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSH-----LDVEGER 133 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHH
Confidence 3445699999999999999999999 9987653
No 463
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4.6e-06 Score=61.90 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++...+ .-.|++++..+|.++++|||+.+ +|....
T Consensus 152 ~~LS~G~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~ 189 (255)
T PRK11300 152 GNLAYGQQR--RLEIARCMVTQPEILMLDEPAAG-----LNPKET 189 (255)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccC-----CCHHHH
Confidence 344444444 45699999999999999999999 998765
No 464
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.34 E-value=5.2e-06 Score=64.42 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 139 q~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r 170 (353)
T TIGR03265 139 QQQRVALARALATSPGLLLLDEPLSA-----LDARVR 170 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHH
Confidence 45557799999999999999999999 987754
No 465
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=4e-06 Score=64.94 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=31.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|. +...-.|++++..+|+++++|||+.+ +|....+
T Consensus 135 ~~LSgG--q~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~ 173 (351)
T PRK11432 135 DQISGG--QQQRVALARALILKPKVLLFDEPLSN-----LDANLRR 173 (351)
T ss_pred hhCCHH--HHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHH
Confidence 445444 44557799999999999999999999 9987643
No 466
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.34 E-value=2.1e-06 Score=61.96 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...+|...+ .-.|++++..+|+++++|||+.+ +|....
T Consensus 131 ~~LSgG~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~ 168 (213)
T cd03235 131 GELSGGQQQ--RVLLARALVQDPDLLLLDEPFAG-----VDPKTQ 168 (213)
T ss_pred ccCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence 445544444 45699999999999999999999 998764
No 467
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.34 E-value=2.4e-06 Score=59.88 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
....++... ..-.|++++..+|+++.+|||+.+ +|....
T Consensus 96 ~~~LS~G~~--qrv~laral~~~p~~lllDEP~~~-----LD~~~~ 134 (178)
T cd03247 96 GRRFSGGER--QRLALARILLQDAPIVLLDEPTVG-----LDPITE 134 (178)
T ss_pred cccCCHHHH--HHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence 344544433 445699999999999999999999 998765
No 468
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=8.1e-06 Score=58.96 Aligned_cols=39 Identities=33% Similarity=0.390 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++.. ...-.|++++..+|.++++|||+.+ +|....+
T Consensus 130 ~~LS~G~--~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~ 168 (214)
T cd03297 130 AQLSGGE--KQRVALARALAAQPELLLLDEPFSA-----LDRALRL 168 (214)
T ss_pred ccCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 3444443 3446699999999999999999999 9987653
No 469
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.33 E-value=1e-05 Score=59.34 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++...+ .-.+++++..+|.++++|||+.+ +|...+.
T Consensus 152 ~~LS~G~~q--rl~la~al~~~p~llllDEPt~~-----LD~~~~~ 190 (236)
T cd03267 152 RQLSLGQRM--RAEIAAALLHEPEILFLDEPTIG-----LDVVAQE 190 (236)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHH
Confidence 344444333 45699999999999999999999 9987653
No 470
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.33 E-value=6.6e-07 Score=64.02 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...-.+++++..+|.+.++|||+.+ +|....+
T Consensus 130 ~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~ 162 (201)
T cd03231 130 QQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVA 162 (201)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence 34446699999999999999999999 9987653
No 471
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.33 E-value=2.4e-06 Score=64.63 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=30.3
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.+++... -.-.|++++..+|.++++|||+.+ +|....+
T Consensus 149 ~~LS~Gq~--qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~ 187 (289)
T PRK13645 149 FELSGGQK--RRVALAGIIAMDGNTLVLDEPTGG-----LDPKGEE 187 (289)
T ss_pred hhCCHHHH--HHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence 44444433 445699999999999999999999 9987653
No 472
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.33 E-value=1.4e-06 Score=64.20 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--cc----ccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
-.++++|.+|+|||||+|.|+...... .. ....+++.....+...+ -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 378899999999999999977532211 11 11122343333343322 26899999644
No 473
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=1.1e-06 Score=62.31 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..+|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 108 ~LSgGe~q--rv~la~al~~~p~vlllDEP~~~-----LD~~~~~ 145 (192)
T cd03232 108 GLSVEQRK--RLTIGVELAAKPSILFLDEPTSG-----LDSQAAY 145 (192)
T ss_pred cCCHHHhH--HHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHH
Confidence 44444444 45699999999999999999999 9887653
No 474
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.33 E-value=1.6e-06 Score=67.39 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
.++.++|.+|||||||+|+++.... .....+..|++.....+..+. .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999875322 112334556666655555422 246999999653
No 475
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.32 E-value=6.5e-06 Score=59.75 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...+|... -.-.|++++..+|.++++|||+.+ +|...++
T Consensus 140 ~~LS~G~~--qrv~laral~~~p~illlDEPt~~-----LD~~~~~ 178 (221)
T TIGR02211 140 SELSGGER--QRVAIARALVNQPSLVLADEPTGN-----LDNNNAK 178 (221)
T ss_pred hhCCHHHH--HHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHH
Confidence 34444433 345699999999999999999999 9987653
No 476
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=1.6e-06 Score=65.02 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=30.1
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..+|.. .-.-.|++++..+|.++++|||+.+ +|...+.
T Consensus 138 ~LSgG~--~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~ 175 (274)
T PRK13647 138 HLSYGQ--KKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQE 175 (274)
T ss_pred hCCHHH--HHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHH
Confidence 444433 4456699999999999999999999 9987653
No 477
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.32 E-value=2.4e-06 Score=59.99 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=28.8
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..++... -.-.|++++..+|.++++|||+.+ +|....
T Consensus 97 ~LS~G~~--qrl~laral~~~p~llllDEP~~~-----LD~~~~ 133 (180)
T cd03214 97 ELSGGER--QRVLLARALAQEPPILLLDEPTSH-----LDIAHQ 133 (180)
T ss_pred cCCHHHH--HHHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence 3444433 345699999999999999999999 887654
No 478
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.32 E-value=8.6e-06 Score=59.41 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++.. ...-.|++++..+|+++++|||+.+ +|....+
T Consensus 145 ~~LS~Ge--~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~ 183 (228)
T PRK10584 145 AQLSGGE--QQRVALARAFNGRPDVLFADEPTGN-----LDRQTGD 183 (228)
T ss_pred hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence 3344433 3445699999999999999999999 9987653
No 479
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.32 E-value=3.5e-06 Score=58.38 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.+++++..+|+++.+|||+.+ +|...++
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~-----LD~~~~~ 128 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSA-----LDEESED 128 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccc-----cCHHHHH
Confidence 34456699999999999999999999 9987653
No 480
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=9.3e-06 Score=61.33 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=30.1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..+++. +.-.-.|++++..+|+++++|||+.+ +|...+
T Consensus 144 ~~LSgG--q~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~ 181 (287)
T PRK13641 144 FELSGG--QMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGR 181 (287)
T ss_pred ccCCHH--HHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHH
Confidence 344443 34456699999999999999999999 998765
No 481
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.32 E-value=2.1e-06 Score=62.87 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.+...|+-++.++|+++++|||+.. +|..+|.
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvg-----LDV~aq~ 193 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVG-----LDVNAQA 193 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccC-----cchhHHH
Confidence 55678899999999999999999999 9988764
No 482
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.32 E-value=5.6e-06 Score=59.19 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077 159 NFEKPFLYLARKLAGDPNLHFVESPALA 186 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~ 186 (199)
|=++.+-+|++++..+|+++++|||+..
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~G 166 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEG 166 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 4466677899999999999999999998
No 483
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32 E-value=1.1e-05 Score=60.31 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=29.3
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
..++.. .-.-.|++++..+|.++++|||+.+ +|....
T Consensus 160 ~LS~Gq--~qrv~lAral~~~p~illLDEPt~~-----LD~~~~ 196 (269)
T cd03294 160 ELSGGM--QQRVGLARALAVDPDILLMDEAFSA-----LDPLIR 196 (269)
T ss_pred cCCHHH--HHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHH
Confidence 444433 3445699999999999999999999 998765
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.32 E-value=4e-06 Score=68.67 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|+|++..++.++.+|||+.+ +|....
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSa-----LD~~te 506 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEH-----LDAGTE 506 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 44456799999999999999999999 998654
No 485
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.31 E-value=1.6e-05 Score=57.34 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.7
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++...+ .-.|++++..+|.+.++|||+.+ +|...+.
T Consensus 128 ~LS~G~~q--rl~laral~~~p~llllDEPt~~-----LD~~~~~ 165 (213)
T TIGR01277 128 QLSGGQRQ--RVALARCLVRPNPILLLDEPFSA-----LDPLLRE 165 (213)
T ss_pred cCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence 44444333 46699999999999999999999 9987653
No 486
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.31 E-value=3e-06 Score=61.74 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=29.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++.. .-.-.|++++..+|.++++|||+.+ +|....
T Consensus 144 ~~LS~G~--~qrv~laral~~~p~lllLDEPt~~-----LD~~~~ 181 (228)
T cd03257 144 HELSGGQ--RQRVAIARALALNPKLLIADEPTSA-----LDVSVQ 181 (228)
T ss_pred hhcCHHH--HHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHH
Confidence 3344433 3446699999999999999999999 998764
No 487
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.31 E-value=3.8e-06 Score=64.64 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|...+ ...|++++..+|+++++|||+.+ +|...+.
T Consensus 160 ~~LSgG~~Q--Rv~IArAL~~~P~llilDEPts~-----LD~~~~~ 198 (330)
T PRK09473 160 HEFSGGMRQ--RVMIAMALLCRPKLLIADEPTTA-----LDVTVQA 198 (330)
T ss_pred ccCCHHHHH--HHHHHHHHHcCCCEEEEeCCCcc-----CCHHHHH
Confidence 344554444 45699999999999999999999 9987764
No 488
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=1.4e-05 Score=59.51 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~ 184 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSA-----LDPIST 184 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHH
Confidence 3446699999999999999999999 998764
No 489
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.31 E-value=1.2e-05 Score=62.47 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|.. .-.-.|++++..+|+++++|||+.+ +|....+
T Consensus 130 ~~LSgGq--kqRvalAraL~~~p~lllLDEPts~-----LD~~~~~ 168 (354)
T TIGR02142 130 GRLSGGE--KQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKY 168 (354)
T ss_pred hhCCHHH--HHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHH
Confidence 3444443 4456699999999999999999999 9987653
No 490
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=7.3e-06 Score=64.12 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 154 q~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r 185 (377)
T PRK11607 154 QRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLR 185 (377)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 45557799999999999999999999 998764
No 491
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=5.9e-06 Score=60.45 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=30.0
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++...+ .-.|++++..+|.++++|||+.+ +|...+
T Consensus 128 ~~LS~G~~q--rv~laral~~~p~lllLDEP~~g-----LD~~~~ 165 (232)
T PRK10771 128 GQLSGGQRQ--RVALARCLVREQPILLLDEPFSA-----LDPALR 165 (232)
T ss_pred ccCCHHHHH--HHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 345544444 45699999999999999999999 998765
No 492
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.31 E-value=1.6e-05 Score=57.82 Aligned_cols=38 Identities=24% Similarity=0.146 Sum_probs=29.6
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++... -.-.+++++..+|.++++|||+.+ +|...++
T Consensus 124 ~LS~G~~--~rv~laral~~~p~llllDEP~~~-----LD~~~~~ 161 (223)
T TIGR03740 124 QFSLGMK--QRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQ 161 (223)
T ss_pred hCCHHHH--HHHHHHHHHhcCCCEEEECCCccC-----CCHHHHH
Confidence 3444433 345699999999999999999999 9987653
No 493
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.31 E-value=1.2e-05 Score=59.16 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++...+ .-.|++++..+|.++++|||+.+ +|....+
T Consensus 135 ~~LS~G~~q--rl~la~al~~~p~llllDEP~~~-----LD~~~~~ 173 (239)
T cd03296 135 AQLSGGQRQ--RVALARALAVEPKVLLLDEPFGA-----LDAKVRK 173 (239)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence 344444434 45699999999999999999999 9987653
No 494
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=61.16 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHh------CCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~------~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++....+++.+. ..++++++|||+.. +|+.+|.
T Consensus 140 EqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa-----LDi~HQ~ 178 (259)
T COG4559 140 EQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA-----LDIAHQH 178 (259)
T ss_pred HHHHHHHHHHHHHccCCCCCCceEEecCCccc-----cchHHHH
Confidence 455566777774 45578899999999 9999986
No 495
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.30 E-value=1.9e-06 Score=63.45 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+...-.|++++..+|+++++|||+.+ +|...+.
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~-----LD~~~~~ 180 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAG-----MTDEETE 180 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccC-----CCHHHHH
Confidence 34446699999999999999999999 9987653
No 496
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=1.1e-05 Score=59.88 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.2
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|...+ .-.|++++..+|.++++|||+.+ +|...++
T Consensus 127 ~~LSgGq~q--rl~laral~~~p~lllLDEPt~~-----LD~~~~~ 165 (255)
T PRK11248 127 WQLSGGQRQ--RVGIARALAANPQLLLLDEPFGA-----LDAFTRE 165 (255)
T ss_pred hhCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHH
Confidence 444544444 45699999999999999999999 9987653
No 497
>PRK14974 cell division protein FtsY; Provisional
Probab=98.30 E-value=1.4e-06 Score=66.74 Aligned_cols=95 Identities=13% Similarity=0.000 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCccccccc-c---ccc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077 61 KIRFYCWDTAGQEKFGGL-R---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~ 134 (199)
++.+.++||+|....... . ..+ ..+.+..++|.|++.... .......+... -..--++.||.|.....-
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~--~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA--VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc--CCCCEEEEeeecCCCCcc
Confidence 356899999996542221 1 111 235788899999876532 22222222221 122357789999865322
Q ss_pred cHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
.....+...+.++.+++ +|.+++++.
T Consensus 297 --~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 --AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred --HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 23444555688887776 688886654
No 498
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=1.2e-05 Score=60.88 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++. +.-.-.|++++..+|+++++|||+.+ +|...+.
T Consensus 144 ~~LSgG--q~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~ 182 (290)
T PRK13634 144 FELSGG--QMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRK 182 (290)
T ss_pred ccCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHH
Confidence 344443 34456699999999999999999999 9987653
No 499
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.30 E-value=1e-05 Score=61.14 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|.++++|||+.+ +|..++
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~ 180 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKAR 180 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHH
Confidence 34456699999999999999999999 998765
No 500
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.30 E-value=5.5e-06 Score=64.39 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=29.7
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.++|. +.-.-.|++++..+|.++++|||+.+ +|....
T Consensus 129 ~LSGG--q~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r 165 (363)
T TIGR01186 129 ELSGG--MQQRVGLARALAAEPDILLMDEAFSA-----LDPLIR 165 (363)
T ss_pred hCCHH--HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence 44444 34456799999999999999999999 998764
Done!