Query 029077
Match_columns 199
No_of_seqs 150 out of 2038
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 11:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.6E-39 9E-44 232.2 18.4 174 1-174 1-177 (216)
2 3gj0_A GTP-binding nuclear pro 100.0 1.9E-36 6.7E-41 218.6 16.5 191 6-196 8-198 (221)
3 2hup_A RAS-related protein RAB 100.0 6.1E-34 2.1E-38 202.7 17.7 171 6-176 22-196 (201)
4 3q3j_B RHO-related GTP-binding 100.0 8.9E-34 3E-38 203.8 18.6 170 7-177 21-207 (214)
5 3kkq_A RAS-related protein M-R 100.0 4.4E-33 1.5E-37 195.3 20.9 169 4-173 9-182 (183)
6 1x3s_A RAS-related protein RAB 100.0 7.1E-33 2.4E-37 195.9 19.9 171 11-181 13-186 (195)
7 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-32 5.2E-37 191.4 21.2 166 10-175 4-176 (177)
8 3tw8_B RAS-related protein RAB 100.0 1.2E-32 4.1E-37 192.4 20.2 165 10-174 6-172 (181)
9 2a5j_A RAS-related protein RAB 100.0 1.2E-32 4E-37 194.6 20.1 168 6-173 14-184 (191)
10 1z2a_A RAS-related protein RAB 100.0 9.6E-33 3.3E-37 190.7 19.2 163 11-173 3-167 (168)
11 1z0f_A RAB14, member RAS oncog 100.0 1.1E-32 3.6E-37 192.4 19.6 164 10-173 12-178 (179)
12 3reg_A RHO-like small GTPase; 100.0 1.6E-32 5.6E-37 194.2 20.8 167 9-176 19-191 (194)
13 2ew1_A RAS-related protein RAB 100.0 9.8E-33 3.3E-37 196.5 19.7 164 11-174 24-190 (201)
14 1r2q_A RAS-related protein RAB 100.0 8.6E-33 2.9E-37 191.2 18.6 163 11-173 4-169 (170)
15 2gf9_A RAS-related protein RAB 100.0 3.1E-32 1.1E-36 192.0 21.5 163 11-173 20-185 (189)
16 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-32 4E-37 193.5 19.1 162 6-174 13-181 (184)
17 1z08_A RAS-related protein RAB 100.0 1.6E-32 5.6E-37 190.0 19.3 163 11-173 4-169 (170)
18 3tkl_A RAS-related protein RAB 100.0 3.6E-32 1.2E-36 192.5 21.4 166 10-175 13-181 (196)
19 1g16_A RAS-related protein SEC 100.0 1.8E-32 6.2E-37 189.7 19.3 163 12-174 2-166 (170)
20 1ek0_A Protein (GTP-binding pr 100.0 1.2E-32 4E-37 190.5 18.4 161 12-172 2-168 (170)
21 3cpj_B GTP-binding protein YPT 100.0 1.4E-32 4.8E-37 198.7 19.4 181 1-181 1-184 (223)
22 3c5c_A RAS-like protein 12; GD 100.0 1.5E-32 5.2E-37 193.4 19.0 164 8-173 16-186 (187)
23 3t5g_A GTP-binding protein RHE 100.0 2.6E-32 8.9E-37 191.0 19.6 164 11-175 4-171 (181)
24 2efe_B Small GTP-binding prote 100.0 2.7E-32 9.1E-37 190.8 19.3 166 9-174 8-176 (181)
25 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-32 3.9E-37 192.2 17.3 166 10-175 3-175 (178)
26 1z0j_A RAB-22, RAS-related pro 100.0 4.1E-32 1.4E-36 187.9 19.7 162 11-172 4-168 (170)
27 2atx_A Small GTP binding prote 100.0 4.2E-32 1.4E-36 192.0 20.1 162 11-173 16-193 (194)
28 2fg5_A RAB-22B, RAS-related pr 100.0 1.9E-32 6.4E-37 193.7 18.2 165 11-175 21-188 (192)
29 1z06_A RAS-related protein RAB 100.0 2E-32 6.8E-37 193.0 18.2 166 7-172 14-187 (189)
30 2oil_A CATX-8, RAS-related pro 100.0 4.2E-32 1.4E-36 191.9 19.8 164 10-173 22-188 (193)
31 3cbq_A GTP-binding protein REM 100.0 1.9E-32 6.4E-37 194.2 18.0 170 6-175 16-190 (195)
32 2g6b_A RAS-related protein RAB 100.0 9.2E-32 3.2E-36 187.9 21.1 167 9-175 6-176 (180)
33 2fu5_C RAS-related protein RAB 100.0 1.4E-32 4.9E-37 192.7 16.7 163 11-173 6-171 (183)
34 2p5s_A RAS and EF-hand domain 100.0 1.6E-32 5.6E-37 195.0 17.2 166 8-173 23-197 (199)
35 1m7b_A RND3/RHOE small GTP-bin 100.0 3.2E-32 1.1E-36 191.2 18.5 163 10-173 4-183 (184)
36 1c1y_A RAS-related protein RAP 100.0 6.9E-32 2.4E-36 186.2 19.8 161 11-172 1-166 (167)
37 2il1_A RAB12; G-protein, GDP, 100.0 1.6E-32 5.5E-37 194.0 16.8 167 7-173 20-190 (192)
38 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.4E-32 1.9E-36 189.9 19.2 166 10-176 2-183 (186)
39 2bcg_Y Protein YP2, GTP-bindin 100.0 8.3E-32 2.8E-36 192.3 20.2 166 11-176 6-174 (206)
40 1zbd_A Rabphilin-3A; G protein 100.0 8.3E-32 2.8E-36 191.8 20.1 163 11-173 6-171 (203)
41 1vg8_A RAS-related protein RAB 100.0 1.2E-31 4.1E-36 191.4 20.7 166 10-175 5-177 (207)
42 2bme_A RAB4A, RAS-related prot 100.0 5.1E-32 1.8E-36 190.2 18.4 164 11-174 8-174 (186)
43 2fn4_A P23, RAS-related protei 100.0 8.9E-32 3.1E-36 188.0 19.5 166 9-175 5-174 (181)
44 1u8z_A RAS-related protein RAL 100.0 7.8E-32 2.7E-36 185.9 18.9 162 11-173 2-167 (168)
45 2y8e_A RAB-protein 6, GH09086P 100.0 5.2E-32 1.8E-36 188.9 18.1 165 9-173 10-177 (179)
46 2gco_A H9, RHO-related GTP-bin 100.0 1E-31 3.5E-36 191.2 19.9 165 8-173 20-200 (201)
47 3oes_A GTPase rhebl1; small GT 100.0 3.4E-32 1.2E-36 193.7 17.4 167 9-176 20-190 (201)
48 2j0v_A RAC-like GTP-binding pr 100.0 4.6E-32 1.6E-36 194.4 18.2 165 11-176 7-183 (212)
49 2o52_A RAS-related protein RAB 100.0 4E-32 1.4E-36 193.2 17.7 164 11-174 23-189 (200)
50 3q85_A GTP-binding protein REM 100.0 8.8E-32 3E-36 186.2 18.8 161 13-173 2-167 (169)
51 2q3h_A RAS homolog gene family 100.0 1E-31 3.6E-36 191.0 19.5 166 8-174 15-196 (201)
52 3dz8_A RAS-related protein RAB 100.0 2.8E-33 9.7E-38 197.7 11.2 165 10-174 20-187 (191)
53 1gwn_A RHO-related GTP-binding 100.0 5.6E-32 1.9E-36 193.1 17.9 163 10-173 25-204 (205)
54 2j1l_A RHO-related GTP-binding 100.0 7E-32 2.4E-36 193.9 18.5 167 8-175 29-211 (214)
55 2bov_A RAla, RAS-related prote 100.0 1.3E-31 4.4E-36 191.1 19.6 168 6-174 7-178 (206)
56 3cph_A RAS-related protein SEC 100.0 1.8E-31 6.2E-36 191.3 20.2 166 9-174 16-183 (213)
57 4djt_A GTP-binding nuclear pro 100.0 6.9E-32 2.4E-36 194.3 17.9 176 8-183 6-185 (218)
58 3bc1_A RAS-related protein RAB 100.0 2.1E-31 7.3E-36 188.1 19.8 164 10-173 8-185 (195)
59 2ce2_X GTPase HRAS; signaling 100.0 4.5E-31 1.5E-35 181.7 20.8 162 11-173 1-165 (166)
60 2fv8_A H6, RHO-related GTP-bin 100.0 2.7E-31 9.3E-36 189.8 20.2 166 8-174 20-201 (207)
61 3clv_A RAB5 protein, putative; 100.0 3.9E-31 1.3E-35 188.2 20.7 162 11-173 5-204 (208)
62 3con_A GTPase NRAS; structural 100.0 5.1E-31 1.7E-35 185.8 20.8 165 8-173 16-183 (190)
63 1ky3_A GTP-binding protein YPT 100.0 1.2E-31 3.9E-36 187.6 17.1 164 10-173 5-178 (182)
64 1kao_A RAP2A; GTP-binding prot 100.0 1.4E-31 4.7E-36 184.5 17.2 161 11-172 1-165 (167)
65 4dsu_A GTPase KRAS, isoform 2B 100.0 5.1E-31 1.8E-35 185.4 20.4 163 11-174 2-167 (189)
66 4bas_A ADP-ribosylation factor 100.0 1.1E-31 3.6E-36 190.5 17.0 167 5-175 9-191 (199)
67 2a9k_A RAS-related protein RAL 100.0 2.5E-31 8.4E-36 186.7 18.6 165 8-173 13-181 (187)
68 3t1o_A Gliding protein MGLA; G 100.0 2.3E-32 7.9E-37 193.6 13.2 165 9-174 10-193 (198)
69 3bwd_D RAC-like GTP-binding pr 100.0 4.1E-32 1.4E-36 190.0 13.8 162 11-173 6-181 (182)
70 3q72_A GTP-binding protein RAD 100.0 3.4E-31 1.2E-35 182.7 18.1 160 12-173 1-164 (166)
71 2nzj_A GTP-binding protein REM 100.0 3.8E-31 1.3E-35 183.9 18.5 162 11-173 2-169 (175)
72 2iwr_A Centaurin gamma 1; ANK 100.0 3.9E-31 1.3E-35 184.6 17.7 156 11-173 5-169 (178)
73 2yc2_C IFT27, small RAB-relate 100.0 3.6E-32 1.2E-36 194.2 12.6 163 11-173 18-192 (208)
74 2atv_A RERG, RAS-like estrogen 100.0 3.8E-31 1.3E-35 187.5 17.7 163 10-174 25-192 (196)
75 2f7s_A C25KG, RAS-related prot 100.0 1.2E-31 4.1E-36 192.9 15.3 164 11-174 23-200 (217)
76 4gzl_A RAS-related C3 botulinu 100.0 3.9E-31 1.3E-35 188.6 17.8 162 9-171 26-203 (204)
77 2gf0_A GTP-binding protein DI- 100.0 5.4E-31 1.9E-35 186.9 17.9 167 10-177 5-175 (199)
78 2erx_A GTP-binding protein DI- 100.0 1.2E-30 4E-35 180.8 17.5 161 12-173 2-167 (172)
79 2h57_A ADP-ribosylation factor 100.0 8.2E-31 2.8E-35 184.9 16.8 162 7-172 15-186 (190)
80 1zd9_A ADP-ribosylation factor 100.0 6.3E-31 2.2E-35 185.2 15.5 162 9-174 18-186 (188)
81 1ksh_A ARF-like protein 2; sma 100.0 2.1E-30 7.1E-35 182.1 17.9 159 11-174 16-181 (186)
82 2h17_A ADP-ribosylation factor 100.0 3.1E-31 1.1E-35 185.7 13.3 161 5-170 13-180 (181)
83 2g3y_A GTP-binding protein GEM 100.0 2.7E-30 9.2E-35 184.8 18.4 163 9-172 33-202 (211)
84 1zj6_A ADP-ribosylation factor 100.0 9.8E-31 3.4E-35 184.0 15.4 160 11-175 14-180 (187)
85 3l0i_B RAS-related protein RAB 100.0 1.3E-32 4.4E-37 195.5 5.5 165 10-174 30-197 (199)
86 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-29 4.4E-34 175.5 19.5 159 11-174 5-170 (171)
87 1f6b_A SAR1; gtpases, N-termin 100.0 2E-30 7E-35 184.1 15.1 158 9-171 21-197 (198)
88 1m2o_B GTP-binding protein SAR 100.0 5E-30 1.7E-34 181.0 16.7 157 9-170 19-189 (190)
89 2zej_A Dardarin, leucine-rich 100.0 7.4E-31 2.5E-35 184.3 11.0 163 13-175 2-180 (184)
90 2cjw_A GTP-binding protein GEM 100.0 3.1E-29 1.1E-33 177.2 19.2 161 11-172 4-171 (192)
91 1fzq_A ADP-ribosylation factor 100.0 6.5E-30 2.2E-34 179.0 15.6 159 10-173 13-178 (181)
92 2b6h_A ADP-ribosylation factor 100.0 8.7E-30 3E-34 180.0 15.5 159 10-173 26-191 (192)
93 1r8s_A ADP-ribosylation factor 100.0 7.2E-30 2.5E-34 175.7 14.4 155 14-173 1-162 (164)
94 1moz_A ARL1, ADP-ribosylation 100.0 3.2E-30 1.1E-34 180.6 11.6 158 11-173 16-180 (183)
95 3llu_A RAS-related GTP-binding 100.0 8.3E-30 2.8E-34 180.6 13.6 162 6-171 13-195 (196)
96 2x77_A ADP-ribosylation factor 100.0 2.5E-29 8.5E-34 177.1 14.3 160 11-175 20-186 (189)
97 2wkq_A NPH1-1, RAS-related C3 100.0 1.6E-28 5.3E-33 187.1 19.5 163 11-174 153-331 (332)
98 2f9l_A RAB11B, member RAS onco 100.0 4.6E-28 1.6E-32 172.0 20.0 162 12-173 4-168 (199)
99 1oix_A RAS-related protein RAB 100.0 1.3E-27 4.5E-32 168.7 20.0 160 12-171 28-190 (191)
100 3th5_A RAS-related C3 botulinu 99.9 1.9E-31 6.4E-36 190.2 0.0 161 10-171 27-203 (204)
101 3c5h_A Glucocorticoid receptor 100.0 5.3E-29 1.8E-33 183.3 10.8 166 7-172 13-254 (255)
102 3o47_A ADP-ribosylation factor 100.0 6.8E-28 2.3E-32 183.2 15.6 160 10-174 162-328 (329)
103 2wji_A Ferrous iron transport 100.0 8.1E-28 2.8E-32 165.9 14.1 154 11-171 1-163 (165)
104 2fh5_B SR-beta, signal recogni 100.0 2.8E-27 9.7E-32 169.7 16.0 158 11-171 5-214 (214)
105 3lvq_E ARF-GAP with SH3 domain 99.9 1E-26 3.5E-31 186.1 17.3 162 9-175 318-486 (497)
106 2lkc_A Translation initiation 99.9 8.8E-27 3E-31 162.3 14.4 161 9-175 4-173 (178)
107 3r7w_A Gtpase1, GTP-binding pr 99.9 9.3E-27 3.2E-31 175.5 15.0 158 11-172 1-180 (307)
108 2qu8_A Putative nucleolar GTP- 99.9 1.1E-26 3.7E-31 168.3 14.6 164 9-174 25-206 (228)
109 3iev_A GTP-binding protein ERA 99.9 2.9E-26 9.9E-31 172.8 15.6 177 5-184 2-193 (308)
110 2wjg_A FEOB, ferrous iron tran 99.9 1.4E-26 4.9E-31 162.7 13.0 161 9-176 3-172 (188)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 1.5E-27 5.1E-32 178.8 7.7 153 15-173 1-174 (331)
112 1svi_A GTP-binding protein YSX 99.9 3.4E-26 1.2E-30 161.6 13.4 157 10-172 20-194 (195)
113 3dpu_A RAB family protein; roc 99.9 1.2E-26 4.1E-31 187.0 11.7 165 9-176 37-211 (535)
114 3a1s_A Iron(II) transport prot 99.9 4.3E-26 1.5E-30 167.8 11.9 156 11-173 3-167 (258)
115 2dyk_A GTP-binding protein; GT 99.9 5.6E-26 1.9E-30 155.7 10.8 148 14-171 2-160 (161)
116 3pqc_A Probable GTP-binding pr 99.9 3.4E-25 1.2E-29 156.3 14.7 158 7-173 17-194 (195)
117 2cxx_A Probable GTP-binding pr 99.9 2E-26 7E-31 162.0 8.3 156 14-176 2-187 (190)
118 2gj8_A MNME, tRNA modification 99.9 3.6E-26 1.2E-30 158.7 8.3 154 12-173 3-166 (172)
119 3b1v_A Ferrous iron uptake tra 99.9 1.3E-25 4.3E-30 166.2 9.7 153 13-173 3-164 (272)
120 3i8s_A Ferrous iron transport 99.9 6.3E-26 2.2E-30 168.4 8.0 157 11-174 1-170 (274)
121 3iby_A Ferrous iron transport 99.9 2.2E-25 7.6E-30 163.8 9.8 150 14-170 2-164 (256)
122 4dhe_A Probable GTP-binding pr 99.9 4.2E-25 1.4E-29 159.3 10.2 163 9-174 25-212 (223)
123 3k53_A Ferrous iron transport 99.9 1.6E-24 5.5E-29 160.7 13.0 160 11-176 1-169 (271)
124 1wf3_A GTP-binding protein; GT 99.9 3.6E-24 1.2E-28 160.7 11.5 162 11-177 5-177 (301)
125 3gee_A MNME, tRNA modification 99.9 1.2E-23 4E-28 166.5 13.9 158 12-172 232-397 (476)
126 3qq5_A Small GTP-binding prote 99.9 3.6E-24 1.2E-28 166.8 9.7 160 8-174 29-197 (423)
127 2e87_A Hypothetical protein PH 99.9 3.6E-23 1.2E-27 159.1 14.7 159 11-173 165-336 (357)
128 1nrj_B SR-beta, signal recogni 99.9 1.7E-24 5.8E-29 155.6 5.7 142 9-159 8-170 (218)
129 3sjy_A Translation initiation 99.9 3.2E-22 1.1E-26 156.0 15.1 165 7-173 2-192 (403)
130 1lnz_A SPO0B-associated GTP-bi 99.9 7.7E-23 2.6E-27 155.6 10.1 157 15-176 160-333 (342)
131 2hjg_A GTP-binding protein ENG 99.9 4.5E-23 1.5E-27 162.4 9.0 160 10-173 172-349 (436)
132 1ega_A Protein (GTP-binding pr 99.9 5E-22 1.7E-26 149.2 13.3 162 11-177 6-179 (301)
133 1mky_A Probable GTP-binding pr 99.9 1.8E-22 6.3E-27 159.0 11.3 152 15-174 3-167 (439)
134 3cb4_D GTP-binding protein LEP 99.9 3.5E-22 1.2E-26 161.5 13.2 160 12-174 3-183 (599)
135 2xtp_A GTPase IMAP family memb 99.9 2.6E-22 8.9E-27 148.0 10.9 171 8-179 17-214 (260)
136 2hjg_A GTP-binding protein ENG 99.9 4E-23 1.4E-27 162.7 6.6 155 13-174 3-166 (436)
137 3lxw_A GTPase IMAP family memb 99.9 7.5E-22 2.6E-26 144.4 12.7 173 8-180 16-215 (247)
138 4dcu_A GTP-binding protein ENG 99.9 2.5E-22 8.4E-27 159.0 10.8 161 10-174 192-370 (456)
139 3lxx_A GTPase IMAP family memb 99.9 7.2E-22 2.5E-26 143.9 12.2 172 7-180 23-221 (239)
140 1xzp_A Probable tRNA modificat 99.9 1.1E-22 3.8E-27 161.0 7.9 151 13-172 243-404 (482)
141 2ywe_A GTP-binding protein LEP 99.9 1.3E-21 4.3E-26 158.1 12.8 160 12-174 5-185 (600)
142 1cip_A Protein (guanine nucleo 99.9 3.2E-21 1.1E-25 147.1 13.4 114 60-173 191-344 (353)
143 1wb1_A Translation elongation 99.9 2.6E-21 9E-26 153.7 13.3 157 8-172 14-188 (482)
144 3p26_A Elongation factor 1 alp 99.9 8.5E-22 2.9E-26 156.8 10.3 152 11-162 31-227 (483)
145 1s0u_A EIF-2-gamma, translatio 99.9 2.1E-20 7.3E-25 146.0 17.5 159 10-173 5-198 (408)
146 3j2k_7 ERF3, eukaryotic polype 99.9 7.1E-21 2.4E-25 149.7 14.6 156 8-165 12-217 (439)
147 3izy_P Translation initiation 99.9 5.7E-23 1.9E-27 164.0 2.4 157 12-172 3-167 (537)
148 2ged_A SR-beta, signal recogni 99.9 1.2E-21 4.2E-26 138.0 8.6 117 10-135 45-174 (193)
149 3tr5_A RF-3, peptide chain rel 99.9 2.8E-21 9.5E-26 154.7 11.4 119 11-132 11-149 (528)
150 3geh_A MNME, tRNA modification 99.9 3.3E-22 1.1E-26 157.6 5.5 155 12-175 223-386 (462)
151 4dcu_A GTP-binding protein ENG 99.9 6.6E-22 2.3E-26 156.5 7.1 160 8-173 18-185 (456)
152 3ohm_A Guanine nucleotide-bind 99.9 6.6E-21 2.3E-25 143.5 12.2 116 60-175 165-320 (327)
153 1mky_A Probable GTP-binding pr 99.8 6.7E-21 2.3E-25 150.1 12.2 158 11-174 178-356 (439)
154 1d2e_A Elongation factor TU (E 99.8 3.9E-21 1.3E-25 149.6 10.3 159 12-173 2-195 (397)
155 1kk1_A EIF2gamma; initiation o 99.8 3.9E-20 1.3E-24 144.6 15.7 160 9-173 6-200 (410)
156 1jny_A EF-1-alpha, elongation 99.8 6.3E-22 2.2E-26 155.7 5.4 155 10-165 3-205 (435)
157 3t5d_A Septin-7; GTP-binding p 99.8 3.1E-21 1.1E-25 143.2 8.8 158 11-171 6-202 (274)
158 2qtf_A Protein HFLX, GTP-bindi 99.8 3.8E-20 1.3E-24 142.0 14.4 157 14-175 179-356 (364)
159 3izq_1 HBS1P, elongation facto 99.8 1.1E-20 3.7E-25 153.7 11.5 154 10-163 164-362 (611)
160 2c78_A Elongation factor TU-A; 99.8 4.7E-21 1.6E-25 149.6 9.0 162 8-172 6-211 (405)
161 2xtz_A Guanine nucleotide-bind 99.8 6.3E-21 2.2E-25 145.5 9.4 114 60-173 181-345 (354)
162 1zcb_A G alpha I/13; GTP-bindi 99.8 4.1E-20 1.4E-24 141.5 13.6 114 60-173 199-353 (362)
163 1g7s_A Translation initiation 99.8 4.8E-20 1.7E-24 149.2 13.8 156 11-172 3-217 (594)
164 2qag_A Septin-2, protein NEDD5 99.8 4.9E-21 1.7E-25 147.1 6.9 161 11-175 35-235 (361)
165 2elf_A Protein translation elo 99.8 3.6E-20 1.2E-24 142.5 11.0 143 15-172 23-179 (370)
166 1zun_B Sulfate adenylate trans 99.8 6E-20 2.1E-24 144.5 12.2 151 11-163 22-214 (434)
167 4fid_A G protein alpha subunit 99.8 2.1E-20 7.3E-25 141.2 8.9 115 59-173 158-328 (340)
168 1pui_A ENGB, probable GTP-bind 99.8 7.9E-20 2.7E-24 130.4 10.5 156 11-174 24-200 (210)
169 1zo1_I IF2, translation initia 99.8 3.4E-21 1.2E-25 152.6 3.3 154 11-169 2-163 (501)
170 1r5b_A Eukaryotic peptide chai 99.8 1E-20 3.6E-25 149.8 6.0 154 11-164 41-243 (467)
171 3avx_A Elongation factor TS, e 99.8 8.6E-20 2.9E-24 154.6 11.7 161 9-172 292-485 (1289)
172 1f60_A Elongation factor EEF1A 99.8 2.1E-20 7.2E-25 147.8 6.0 151 11-163 5-202 (458)
173 2aka_B Dynamin-1; fusion prote 99.8 6.7E-20 2.3E-24 137.6 8.4 158 10-169 23-249 (299)
174 3mca_A HBS1, elongation factor 99.8 3.6E-20 1.2E-24 150.3 5.3 151 10-161 174-371 (592)
175 2h5e_A Peptide chain release f 99.8 6.1E-19 2.1E-23 141.3 11.9 119 10-131 10-148 (529)
176 2dy1_A Elongation factor G; tr 99.8 1.6E-18 5.4E-23 142.6 12.3 117 11-130 7-139 (665)
177 1dar_A EF-G, elongation factor 99.8 2.3E-18 7.9E-23 142.1 12.9 119 10-131 9-143 (691)
178 1udx_A The GTP-binding protein 99.8 5.1E-18 1.7E-22 131.9 13.6 158 15-176 159-328 (416)
179 2qnr_A Septin-2, protein NEDD5 99.8 7.1E-19 2.4E-23 132.0 7.7 164 9-176 14-217 (301)
180 1h65_A Chloroplast outer envel 99.8 3.4E-17 1.2E-21 121.2 15.5 119 11-131 37-168 (270)
181 3def_A T7I23.11 protein; chlor 99.8 6.5E-18 2.2E-22 124.6 11.4 119 10-130 33-164 (262)
182 2rdo_7 EF-G, elongation factor 99.7 6.2E-17 2.1E-21 133.8 15.5 119 10-131 7-148 (704)
183 2xex_A Elongation factor G; GT 99.7 3.8E-17 1.3E-21 134.9 13.9 119 10-131 7-141 (693)
184 1u0l_A Probable GTPase ENGC; p 99.7 1.9E-18 6.6E-23 129.7 5.0 133 28-168 32-168 (301)
185 1jwy_B Dynamin A GTPase domain 99.7 5.7E-17 1.9E-21 122.5 13.1 113 62-176 131-265 (315)
186 2j69_A Bacterial dynamin-like 99.7 3.8E-17 1.3E-21 135.0 13.0 109 63-173 175-325 (695)
187 1wxq_A GTP-binding protein; st 99.7 1.4E-18 4.9E-23 134.7 4.1 85 14-98 1-114 (397)
188 2qag_C Septin-7; cell cycle, c 99.7 2.9E-17 1E-21 127.7 10.5 160 9-171 27-225 (418)
189 1azs_C GS-alpha; complex (lyas 99.7 4.6E-17 1.6E-21 125.7 9.2 113 61-173 216-385 (402)
190 3vqt_A RF-3, peptide chain rel 99.7 2.8E-16 9.6E-21 126.4 12.4 117 12-131 30-166 (548)
191 3p32_A Probable GTPase RV1496/ 99.7 6.4E-17 2.2E-21 124.1 6.3 103 61-173 171-284 (355)
192 3t34_A Dynamin-related protein 99.7 5.8E-17 2E-21 124.7 6.0 103 62-166 136-254 (360)
193 2x2e_A Dynamin-1; nitration, h 99.7 2.6E-17 8.9E-22 126.3 3.9 158 10-169 28-254 (353)
194 2wsm_A Hydrogenase expression/ 99.6 3.7E-16 1.3E-20 112.2 7.9 152 12-173 29-214 (221)
195 1n0u_A EF-2, elongation factor 99.6 1.2E-15 4.3E-20 128.3 8.3 117 11-130 17-163 (842)
196 1jal_A YCHF protein; nucleotid 99.6 3E-14 1E-18 108.7 14.6 82 14-97 3-108 (363)
197 2www_A Methylmalonic aciduria 99.6 9.3E-16 3.2E-20 117.3 6.0 102 61-172 166-278 (349)
198 2hf9_A Probable hydrogenase ni 99.6 7.9E-15 2.7E-19 105.6 10.3 153 11-173 36-224 (226)
199 2qpt_A EH domain-containing pr 99.6 2.3E-15 7.8E-20 121.3 6.8 120 11-132 63-233 (550)
200 3j25_A Tetracycline resistance 99.6 9.2E-16 3.2E-20 125.7 3.3 115 14-131 3-133 (638)
201 2p67_A LAO/AO transport system 99.6 4.2E-15 1.4E-19 113.4 6.2 102 61-172 148-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.6 1.7E-14 5.8E-19 106.1 9.2 112 61-174 108-258 (262)
203 4fn5_A EF-G 1, elongation fact 99.5 1.4E-13 4.8E-18 114.2 12.8 117 12-131 12-151 (709)
204 2dby_A GTP-binding protein; GD 99.5 2.7E-13 9.1E-18 104.0 11.1 84 14-97 2-111 (368)
205 3zvr_A Dynamin-1; hydrolase, D 99.4 5E-13 1.7E-17 110.4 10.2 165 11-177 49-285 (772)
206 4a9a_A Ribosome-interacting GT 99.4 2.6E-12 8.8E-17 98.6 11.1 116 12-131 71-196 (376)
207 2yv5_A YJEQ protein; hydrolase 99.4 1.6E-12 5.5E-17 97.5 9.8 95 72-168 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 2.6E-12 8.9E-17 97.7 9.1 102 61-172 147-260 (337)
209 3l82_B F-box only protein 4; T 99.3 3.4E-12 1.2E-16 89.3 5.2 104 69-173 109-223 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 3.3E-12 1.1E-16 98.4 5.5 90 11-100 20-131 (396)
211 3l2o_B F-box only protein 4; s 99.2 4.4E-11 1.5E-15 87.6 6.5 104 69-173 194-308 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.3E-09 4.6E-14 84.1 14.8 87 11-97 18-127 (392)
213 3h2y_A GTPase family protein; 98.9 1.2E-09 4.2E-14 84.0 6.7 96 71-171 55-158 (368)
214 2qag_B Septin-6, protein NEDD5 98.9 2.8E-09 9.6E-14 82.9 7.9 139 13-155 42-218 (427)
215 3h2y_A GTPase family protein; 98.9 2.7E-10 9.3E-15 87.6 1.7 135 13-153 160-310 (368)
216 2j37_W Signal recognition part 98.9 1.2E-09 4.2E-14 86.9 5.4 152 11-170 99-310 (504)
217 3ec1_A YQEH GTPase; atnos1, at 98.9 2E-10 6.7E-15 88.5 0.7 142 13-160 162-318 (369)
218 1tq4_A IIGP1, interferon-induc 98.9 1.8E-08 6.2E-13 78.3 10.8 160 12-179 68-259 (413)
219 1puj_A YLQF, conserved hypothe 98.8 7.6E-09 2.6E-13 76.7 7.6 101 67-172 4-105 (282)
220 3sop_A Neuronal-specific septi 98.8 1.4E-08 4.9E-13 74.8 8.0 135 13-151 2-178 (270)
221 3ec1_A YQEH GTPase; atnos1, at 98.8 4.7E-09 1.6E-13 80.8 5.0 96 71-171 57-160 (369)
222 3tif_A Uncharacterized ABC tra 98.7 1.9E-08 6.6E-13 72.6 4.6 40 152-198 143-182 (235)
223 3gfo_A Cobalt import ATP-bindi 98.7 3.8E-09 1.3E-13 77.9 0.7 40 152-198 141-180 (275)
224 1puj_A YLQF, conserved hypothe 98.6 3.4E-08 1.2E-12 73.2 5.7 59 11-73 118-176 (282)
225 3cnl_A YLQF, putative uncharac 98.6 1.7E-08 5.8E-13 74.1 3.3 57 14-74 100-156 (262)
226 3tui_C Methionine import ATP-b 98.6 5.4E-08 1.8E-12 74.3 5.6 40 152-198 161-200 (366)
227 3fvq_A Fe(3+) IONS import ATP- 98.5 3.7E-08 1.3E-12 75.1 3.2 39 152-197 136-174 (359)
228 4g1u_C Hemin import ATP-bindin 98.5 5.4E-08 1.9E-12 71.5 3.5 39 153-198 140-184 (266)
229 2pcj_A ABC transporter, lipopr 98.5 9.9E-08 3.4E-12 68.4 4.8 40 152-198 138-177 (224)
230 1sgw_A Putative ABC transporte 98.5 4E-07 1.4E-11 64.7 7.8 33 161-198 138-170 (214)
231 3dm5_A SRP54, signal recogniti 98.5 1.8E-07 6.1E-12 73.2 6.3 140 12-160 99-278 (443)
232 3rlf_A Maltose/maltodextrin im 98.5 3.5E-07 1.2E-11 70.2 7.6 39 152-197 131-169 (381)
233 1v43_A Sugar-binding transport 98.5 4.3E-07 1.5E-11 69.7 7.8 40 152-198 139-178 (372)
234 2olj_A Amino acid ABC transpor 98.5 2.3E-07 7.8E-12 68.0 5.9 39 153-198 158-196 (263)
235 1g29_1 MALK, maltose transport 98.5 5.4E-07 1.8E-11 69.2 7.9 39 152-197 137-175 (372)
236 2ihy_A ABC transporter, ATP-bi 98.5 1.3E-07 4.6E-12 69.9 4.4 40 152-198 159-198 (279)
237 2nq2_C Hypothetical ABC transp 98.5 3.9E-07 1.3E-11 66.5 6.8 40 152-198 126-165 (253)
238 2onk_A Molybdate/tungstate ABC 98.4 2.8E-07 9.5E-12 66.7 5.7 40 152-198 124-163 (240)
239 1b0u_A Histidine permease; ABC 98.4 2.6E-07 8.8E-12 67.8 5.0 40 152-198 151-190 (262)
240 1z47_A CYSA, putative ABC-tran 98.4 8.9E-07 3.1E-11 67.5 7.6 40 152-198 143-182 (355)
241 1vpl_A ABC transporter, ATP-bi 98.4 7.5E-07 2.6E-11 65.0 6.8 40 152-198 144-183 (256)
242 1ji0_A ABC transporter; ATP bi 98.4 4.4E-07 1.5E-11 65.7 5.5 40 152-198 137-176 (240)
243 2it1_A 362AA long hypothetical 98.4 8.5E-07 2.9E-11 67.8 7.3 39 152-197 131-169 (362)
244 3kl4_A SRP54, signal recogniti 98.4 4.8E-07 1.6E-11 70.7 6.0 91 61-160 179-277 (433)
245 2yyz_A Sugar ABC transporter, 98.4 7.3E-07 2.5E-11 68.1 6.8 38 153-197 132-169 (359)
246 2v3c_C SRP54, signal recogniti 98.4 1.1E-06 3.6E-11 68.9 7.6 86 60-153 179-272 (432)
247 1g6h_A High-affinity branched- 98.4 7.9E-07 2.7E-11 65.0 6.3 40 152-198 151-190 (257)
248 2pjz_A Hypothetical protein ST 98.3 3.8E-07 1.3E-11 66.9 4.5 40 152-198 126-165 (263)
249 3cnl_A YLQF, putative uncharac 98.3 3.1E-07 1.1E-11 67.3 3.7 93 69-169 4-97 (262)
250 3d31_A Sulfate/molybdate ABC t 98.3 2.6E-07 8.9E-12 70.3 3.3 39 152-197 125-163 (348)
251 2yz2_A Putative ABC transporte 98.3 9.2E-08 3.2E-12 70.3 0.7 39 153-198 137-175 (266)
252 1oxx_K GLCV, glucose, ABC tran 98.3 1.1E-06 3.6E-11 67.1 6.5 39 152-197 138-176 (353)
253 1f5n_A Interferon-induced guan 98.3 8.4E-07 2.9E-11 71.9 5.6 65 10-74 35-103 (592)
254 2cbz_A Multidrug resistance-as 98.2 1E-05 3.4E-10 58.4 9.3 32 161-197 132-163 (237)
255 2d2e_A SUFC protein; ABC-ATPas 98.2 9.9E-07 3.4E-11 64.2 4.0 37 155-198 144-180 (250)
256 1j8m_F SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 62.3 7.4 93 60-162 179-280 (297)
257 3nh6_A ATP-binding cassette SU 98.2 2.6E-07 9E-12 69.1 0.7 32 161-197 195-226 (306)
258 3e70_C DPA, signal recognition 98.2 6.1E-06 2.1E-10 62.4 8.1 91 62-161 212-308 (328)
259 3szr_A Interferon-induced GTP- 98.2 5.8E-06 2E-10 67.6 7.9 22 15-36 47-68 (608)
260 1t9h_A YLOQ, probable GTPase E 98.1 2E-06 6.9E-11 64.3 4.6 85 76-162 77-166 (307)
261 3b5x_A Lipid A export ATP-bind 98.1 4.4E-06 1.5E-10 68.1 6.5 33 161-198 485-517 (582)
262 1bif_A 6-phosphofructo-2-kinas 98.1 1.3E-07 4.4E-12 75.1 -3.2 102 11-114 37-148 (469)
263 3bk7_A ABC transporter ATP-bin 98.1 2.1E-06 7.3E-11 70.0 3.7 40 152-198 469-508 (607)
264 2rcn_A Probable GTPase ENGC; Y 98.0 2.3E-05 7.9E-10 59.8 8.6 81 82-165 127-211 (358)
265 3ozx_A RNAse L inhibitor; ATP 98.0 2.6E-06 9E-11 68.6 3.3 39 152-197 136-174 (538)
266 3ozx_A RNAse L inhibitor; ATP 98.0 4.4E-06 1.5E-10 67.3 4.1 40 152-198 383-422 (538)
267 3j16_B RLI1P; ribosome recycli 98.0 5.1E-06 1.7E-10 67.8 4.0 39 152-197 465-503 (608)
268 1yqt_A RNAse L inhibitor; ATP- 97.9 3.1E-06 1.1E-10 68.2 1.7 40 152-198 399-438 (538)
269 1ye8_A Protein THEP1, hypothet 97.9 8.1E-06 2.8E-10 56.3 3.2 21 14-34 1-21 (178)
270 1ex7_A Guanylate kinase; subst 97.9 3E-06 1E-10 58.7 1.0 21 16-36 4-24 (186)
271 3qf4_B Uncharacterized ABC tra 97.9 7.6E-06 2.6E-10 66.9 3.5 32 161-197 496-527 (598)
272 3qf4_A ABC transporter, ATP-bi 97.9 1.5E-05 5.2E-10 64.9 5.1 32 161-197 484-515 (587)
273 4f4c_A Multidrug resistance pr 97.8 1.7E-05 5.7E-10 70.4 5.0 31 161-196 1222-1252(1321)
274 4a82_A Cystic fibrosis transme 97.8 3E-05 1E-09 63.1 6.1 32 161-197 482-513 (578)
275 3ux8_A Excinuclease ABC, A sub 97.8 2.4E-05 8.3E-10 64.8 5.4 40 152-198 200-241 (670)
276 3q5d_A Atlastin-1; G protein, 97.7 5.8E-05 2E-09 59.2 6.3 65 10-74 64-152 (447)
277 1kgd_A CASK, peripheral plasma 97.7 2E-05 7E-10 54.2 3.1 22 14-35 6-27 (180)
278 1lvg_A Guanylate kinase, GMP k 97.7 2.2E-05 7.5E-10 55.0 3.1 22 14-35 5-26 (198)
279 4gp7_A Metallophosphoesterase; 97.7 2E-05 6.7E-10 53.9 2.7 33 158-195 85-117 (171)
280 3g5u_A MCG1178, multidrug resi 97.7 3.6E-05 1.2E-09 68.0 5.0 32 161-197 1176-1207(1284)
281 3ney_A 55 kDa erythrocyte memb 97.7 1.5E-05 5E-10 55.7 1.8 24 12-35 18-41 (197)
282 3a00_A Guanylate kinase, GMP k 97.6 2.7E-05 9.1E-10 53.9 3.0 20 16-35 4-23 (186)
283 1znw_A Guanylate kinase, GMP k 97.6 2.6E-05 8.9E-10 54.9 2.9 21 15-35 22-42 (207)
284 2ff7_A Alpha-hemolysin translo 97.6 7.8E-05 2.7E-09 54.1 5.4 33 161-198 150-182 (247)
285 3tr0_A Guanylate kinase, GMP k 97.6 2.8E-05 9.7E-10 54.4 3.0 21 15-35 9-29 (205)
286 3g5u_A MCG1178, multidrug resi 97.6 0.00016 5.3E-09 64.1 8.0 32 161-197 531-562 (1284)
287 1s96_A Guanylate kinase, GMP k 97.6 3.3E-05 1.1E-09 55.0 3.0 21 15-35 18-38 (219)
288 1htw_A HI0065; nucleotide-bind 97.6 3.5E-05 1.2E-09 51.9 2.9 21 15-35 35-55 (158)
289 1zp6_A Hypothetical protein AT 97.6 3.6E-05 1.2E-09 53.3 3.0 22 14-35 10-31 (191)
290 2ixe_A Antigen peptide transpo 97.6 9.9E-05 3.4E-09 54.3 5.4 39 153-198 155-193 (271)
291 1z6g_A Guanylate kinase; struc 97.6 3.6E-05 1.2E-09 54.7 2.9 21 15-35 25-45 (218)
292 3c8u_A Fructokinase; YP_612366 97.6 4.9E-05 1.7E-09 53.5 3.5 24 11-34 20-43 (208)
293 4f4c_A Multidrug resistance pr 97.6 8.9E-05 3.1E-09 65.8 5.7 31 161-196 559-589 (1321)
294 2pze_A Cystic fibrosis transme 97.5 6.8E-05 2.3E-09 53.7 4.1 33 161-198 135-167 (229)
295 2xxa_A Signal recognition part 97.5 0.00053 1.8E-08 53.7 9.4 83 61-151 183-272 (433)
296 2bbw_A Adenylate kinase 4, AK4 97.5 5.8E-05 2E-09 54.6 3.5 22 13-34 27-48 (246)
297 1mv5_A LMRA, multidrug resista 97.5 7.2E-05 2.5E-09 54.1 3.8 32 161-197 144-175 (243)
298 1t9h_A YLOQ, probable GTPase E 97.5 2.9E-05 9.9E-10 58.0 1.5 22 14-35 174-195 (307)
299 3tau_A Guanylate kinase, GMP k 97.5 6E-05 2E-09 53.1 3.1 23 14-36 9-31 (208)
300 2cdn_A Adenylate kinase; phosp 97.5 9.9E-05 3.4E-09 51.6 3.9 27 8-34 15-41 (201)
301 3b85_A Phosphate starvation-in 97.5 5.9E-05 2E-09 53.2 2.7 21 15-35 24-44 (208)
302 3asz_A Uridine kinase; cytidin 97.4 8.1E-05 2.8E-09 52.4 3.4 23 13-35 6-28 (211)
303 2qi9_C Vitamin B12 import ATP- 97.4 7.5E-05 2.6E-09 54.2 3.2 40 152-198 124-170 (249)
304 2bdt_A BH3686; alpha-beta prot 97.4 7.4E-05 2.5E-09 51.7 3.0 20 15-34 4-23 (189)
305 2i3b_A HCR-ntpase, human cance 97.4 6.9E-05 2.4E-09 52.1 2.7 21 15-35 3-23 (189)
306 2zu0_C Probable ATP-dependent 97.4 8.7E-05 3E-09 54.4 3.4 33 161-198 169-201 (267)
307 2ghi_A Transport protein; mult 97.4 8.5E-05 2.9E-09 54.3 3.2 33 161-198 160-192 (260)
308 1kag_A SKI, shikimate kinase I 97.4 8.9E-05 3E-09 50.4 3.1 21 14-34 5-25 (173)
309 2j41_A Guanylate kinase; GMP, 97.4 0.00012 4.2E-09 51.2 3.6 23 14-36 7-29 (207)
310 3lw7_A Adenylate kinase relate 97.4 0.00011 3.7E-09 49.9 3.2 20 14-33 2-21 (179)
311 4eun_A Thermoresistant glucoki 97.4 0.0001 3.5E-09 51.5 3.1 21 14-34 30-50 (200)
312 2qor_A Guanylate kinase; phosp 97.4 0.0001 3.5E-09 51.7 3.1 22 14-35 13-34 (204)
313 3t61_A Gluconokinase; PSI-biol 97.4 0.00012 4E-09 51.2 3.3 22 13-34 18-39 (202)
314 2rcn_A Probable GTPase ENGC; Y 97.4 0.00012 3.9E-09 55.9 3.4 22 15-36 217-238 (358)
315 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 50.3 3.4 22 13-34 3-24 (192)
316 2eyu_A Twitching motility prot 97.3 0.0001 3.5E-09 53.8 3.0 21 14-34 26-46 (261)
317 2ehv_A Hypothetical protein PH 97.3 0.00011 3.7E-09 53.0 3.1 20 15-34 32-51 (251)
318 2bbs_A Cystic fibrosis transme 97.3 0.00013 4.6E-09 54.1 3.6 39 153-198 158-196 (290)
319 2v9p_A Replication protein E1; 97.3 0.00011 3.9E-09 54.8 3.1 21 14-34 127-147 (305)
320 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.3E-09 49.4 3.6 22 14-35 4-25 (178)
321 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.6E-09 49.4 3.2 20 15-34 3-22 (173)
322 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.1E-09 50.1 3.5 23 12-34 2-24 (196)
323 1knq_A Gluconate kinase; ALFA/ 97.3 0.00019 6.4E-09 48.9 3.9 22 13-34 8-29 (175)
324 3fb4_A Adenylate kinase; psych 97.3 0.00013 4.5E-09 51.5 3.2 21 14-34 1-21 (216)
325 3cwq_A Para family chromosome 97.3 0.0024 8.3E-08 44.9 9.6 86 60-150 66-153 (209)
326 3lnc_A Guanylate kinase, GMP k 97.3 7.6E-05 2.6E-09 53.4 1.8 20 15-34 29-48 (231)
327 1ly1_A Polynucleotide kinase; 97.3 0.00017 5.9E-09 49.2 3.5 22 14-35 3-24 (181)
328 3dl0_A Adenylate kinase; phosp 97.3 0.00015 5.1E-09 51.2 3.3 21 14-34 1-21 (216)
329 2if2_A Dephospho-COA kinase; a 97.3 0.00015 5.1E-09 50.7 3.2 22 14-35 2-23 (204)
330 4dzz_A Plasmid partitioning pr 97.3 8.4E-05 2.9E-09 52.0 1.9 85 61-150 75-162 (206)
331 2yvu_A Probable adenylyl-sulfa 97.3 0.00023 7.8E-09 49.1 4.1 26 9-34 9-34 (186)
332 1uf9_A TT1252 protein; P-loop, 97.3 0.00019 6.3E-09 50.1 3.7 27 9-35 4-30 (203)
333 1cke_A CK, MSSA, protein (cyti 97.3 0.00019 6.4E-09 51.0 3.7 21 14-34 6-26 (227)
334 3aez_A Pantothenate kinase; tr 97.3 0.00018 6.2E-09 53.9 3.7 25 10-34 87-111 (312)
335 2jeo_A Uridine-cytidine kinase 97.3 0.00019 6.5E-09 51.9 3.7 24 12-35 24-47 (245)
336 2plr_A DTMP kinase, probable t 97.3 0.00021 7.2E-09 50.1 3.8 23 12-34 3-25 (213)
337 3tqc_A Pantothenate kinase; bi 97.3 0.00026 8.7E-09 53.3 4.4 25 10-34 89-113 (321)
338 3vaa_A Shikimate kinase, SK; s 97.3 0.00018 6E-09 50.3 3.3 21 14-34 26-46 (199)
339 3uie_A Adenylyl-sulfate kinase 97.3 0.00016 5.5E-09 50.5 3.0 23 12-34 24-46 (200)
340 4a74_A DNA repair and recombin 97.2 0.00015 5.3E-09 51.5 2.9 21 15-35 27-47 (231)
341 1jjv_A Dephospho-COA kinase; P 97.2 0.00019 6.5E-09 50.3 3.3 22 14-35 3-24 (206)
342 3cm0_A Adenylate kinase; ATP-b 97.2 0.00023 7.7E-09 49.0 3.6 22 13-34 4-25 (186)
343 2yv5_A YJEQ protein; hydrolase 97.2 0.00016 5.6E-09 54.0 3.0 21 14-34 166-186 (302)
344 3ec2_A DNA replication protein 97.2 0.00014 4.9E-09 49.8 2.5 21 14-34 39-59 (180)
345 1y63_A LMAJ004144AAA protein; 97.2 0.00025 8.4E-09 48.9 3.7 24 12-35 9-32 (184)
346 3sr0_A Adenylate kinase; phosp 97.2 0.00021 7.1E-09 50.3 3.3 21 14-34 1-21 (206)
347 1lw7_A Transcriptional regulat 97.2 0.00015 5.1E-09 55.6 2.7 22 13-34 170-191 (365)
348 2rhm_A Putative kinase; P-loop 97.2 0.00025 8.5E-09 49.0 3.6 22 13-34 5-26 (193)
349 3tlx_A Adenylate kinase 2; str 97.2 0.00026 9E-09 51.1 3.8 23 12-34 28-50 (243)
350 1np6_A Molybdopterin-guanine d 97.2 0.00021 7.2E-09 48.9 3.1 22 14-35 7-28 (174)
351 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.7E-09 49.6 3.3 20 15-34 2-21 (205)
352 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.2E-09 48.8 3.3 22 13-34 5-26 (185)
353 1ukz_A Uridylate kinase; trans 97.2 0.00037 1.2E-08 48.7 4.3 24 11-34 13-36 (203)
354 1u0l_A Probable GTPase ENGC; p 97.2 0.00018 6.3E-09 53.7 2.8 21 15-35 171-191 (301)
355 3iij_A Coilin-interacting nucl 97.2 0.00026 8.9E-09 48.5 3.4 24 11-34 9-32 (180)
356 2f1r_A Molybdopterin-guanine d 97.2 0.00011 3.6E-09 50.3 1.3 20 15-34 4-23 (171)
357 4e22_A Cytidylate kinase; P-lo 97.2 0.00032 1.1E-08 51.0 3.9 23 12-34 26-48 (252)
358 1e4v_A Adenylate kinase; trans 97.2 0.00024 8.2E-09 50.2 3.1 21 14-34 1-21 (214)
359 1nks_A Adenylate kinase; therm 97.2 0.00026 9E-09 48.8 3.3 20 15-34 3-22 (194)
360 2qt1_A Nicotinamide riboside k 97.2 0.00037 1.3E-08 48.8 4.0 25 11-35 19-43 (207)
361 1aky_A Adenylate kinase; ATP:A 97.1 0.00031 1.1E-08 49.7 3.5 22 13-34 4-25 (220)
362 2wwf_A Thymidilate kinase, put 97.1 0.00037 1.3E-08 48.9 3.8 23 12-34 9-31 (212)
363 1gvn_B Zeta; postsegregational 97.1 0.00035 1.2E-08 51.8 3.8 24 11-34 31-54 (287)
364 1odf_A YGR205W, hypothetical 3 97.1 0.00041 1.4E-08 51.5 4.1 25 10-34 28-52 (290)
365 3b60_A Lipid A export ATP-bind 97.1 0.00057 1.9E-08 55.7 5.2 33 161-198 485-517 (582)
366 3jvv_A Twitching mobility prot 97.1 0.00027 9.4E-09 53.9 3.1 21 14-34 124-144 (356)
367 1via_A Shikimate kinase; struc 97.1 0.00026 9E-09 48.2 2.8 20 15-34 6-25 (175)
368 1sq5_A Pantothenate kinase; P- 97.1 0.00037 1.3E-08 52.1 3.8 25 11-35 78-102 (308)
369 2v54_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 48.5 3.6 23 13-35 4-26 (204)
370 2pt5_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 47.2 3.2 21 14-34 1-21 (168)
371 2c95_A Adenylate kinase 1; tra 97.1 0.00038 1.3E-08 48.2 3.5 23 12-34 8-30 (196)
372 1rj9_A FTSY, signal recognitio 97.1 0.00028 9.5E-09 52.7 2.9 84 63-153 186-281 (304)
373 3b9q_A Chloroplast SRP recepto 97.1 0.00028 9.6E-09 52.7 3.0 23 13-35 100-122 (302)
374 2kjq_A DNAA-related protein; s 97.1 0.00022 7.6E-09 47.5 2.1 21 14-34 37-57 (149)
375 1zd8_A GTP:AMP phosphotransfer 97.1 0.00034 1.2E-08 49.8 3.3 21 14-34 8-28 (227)
376 1rz3_A Hypothetical protein rb 97.1 0.00041 1.4E-08 48.5 3.6 23 12-34 21-43 (201)
377 3gd7_A Fusion complex of cysti 97.1 0.00029 9.9E-09 54.4 2.9 32 161-197 160-191 (390)
378 2x8a_A Nuclear valosin-contain 97.1 0.00031 1.1E-08 51.7 2.9 20 16-35 47-66 (274)
379 1uj2_A Uridine-cytidine kinase 97.0 0.00041 1.4E-08 50.3 3.5 25 11-35 20-44 (252)
380 3kta_A Chromosome segregation 97.0 0.00035 1.2E-08 47.9 3.0 20 15-34 28-47 (182)
381 2xb4_A Adenylate kinase; ATP-b 97.0 0.0004 1.4E-08 49.4 3.3 21 14-34 1-21 (223)
382 2yl4_A ATP-binding cassette SU 97.0 0.00061 2.1E-08 55.7 4.7 32 161-197 488-519 (595)
383 1zak_A Adenylate kinase; ATP:A 97.0 0.00037 1.3E-08 49.4 3.1 21 14-34 6-26 (222)
384 2vli_A Antibiotic resistance p 97.0 0.00027 9.3E-09 48.4 2.3 23 12-34 4-26 (183)
385 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00032 1.1E-08 53.0 2.8 20 15-34 173-192 (330)
386 3r20_A Cytidylate kinase; stru 97.0 0.00042 1.4E-08 49.7 3.3 24 11-34 7-30 (233)
387 2gza_A Type IV secretion syste 97.0 0.00034 1.2E-08 53.6 2.9 21 14-34 176-196 (361)
388 1nn5_A Similar to deoxythymidy 97.0 0.0005 1.7E-08 48.3 3.5 22 13-34 9-30 (215)
389 2f6r_A COA synthase, bifunctio 97.0 0.00084 2.9E-08 49.6 4.8 24 11-34 73-96 (281)
390 1ak2_A Adenylate kinase isoenz 97.0 0.00055 1.9E-08 49.0 3.7 23 12-34 15-37 (233)
391 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00032 1.1E-08 55.5 2.6 21 15-35 140-160 (460)
392 2vp4_A Deoxynucleoside kinase; 97.0 0.00055 1.9E-08 48.9 3.6 24 11-34 18-41 (230)
393 2ewv_A Twitching motility prot 97.0 0.00041 1.4E-08 53.4 3.1 22 13-34 136-157 (372)
394 2ze6_A Isopentenyl transferase 97.0 0.00043 1.5E-08 50.3 3.1 20 15-34 3-22 (253)
395 3k9g_A PF-32 protein; ssgcid, 97.0 0.0086 2.9E-07 43.5 10.0 65 61-128 144-208 (267)
396 1xjc_A MOBB protein homolog; s 97.0 0.00051 1.7E-08 46.7 3.1 22 14-35 5-26 (169)
397 2pbr_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 47.5 3.2 20 15-34 2-21 (195)
398 1vht_A Dephospho-COA kinase; s 97.0 0.00062 2.1E-08 48.1 3.7 23 13-35 4-26 (218)
399 1ixz_A ATP-dependent metallopr 97.0 0.00047 1.6E-08 49.9 3.1 20 16-35 52-71 (254)
400 1p9r_A General secretion pathw 97.0 0.00041 1.4E-08 54.1 2.9 22 14-35 168-189 (418)
401 2z0h_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 47.4 3.3 20 15-34 2-21 (197)
402 2pez_A Bifunctional 3'-phospho 96.9 0.00065 2.2E-08 46.4 3.6 23 12-34 4-26 (179)
403 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.00049 1.7E-08 48.8 3.0 20 15-34 25-44 (235)
404 1qf9_A UMP/CMP kinase, protein 96.9 0.00075 2.6E-08 46.5 3.9 21 14-34 7-27 (194)
405 2p5t_B PEZT; postsegregational 96.9 0.00047 1.6E-08 50.0 2.9 24 11-34 30-53 (253)
406 2obl_A ESCN; ATPase, hydrolase 96.9 0.00049 1.7E-08 52.4 3.1 22 15-36 73-94 (347)
407 1yqt_A RNAse L inhibitor; ATP- 96.9 0.00053 1.8E-08 55.3 3.4 39 152-197 156-194 (538)
408 2og2_A Putative signal recogni 96.9 0.00048 1.6E-08 52.6 3.0 23 13-35 157-179 (359)
409 3be4_A Adenylate kinase; malar 96.9 0.00058 2E-08 48.3 3.2 21 14-34 6-26 (217)
410 2bwj_A Adenylate kinase 5; pho 96.9 0.00059 2E-08 47.3 3.2 21 14-34 13-33 (199)
411 1jbk_A CLPB protein; beta barr 96.9 0.00064 2.2E-08 46.5 3.3 22 13-34 43-64 (195)
412 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0031 1.1E-07 49.5 7.4 65 10-74 64-152 (457)
413 2yhs_A FTSY, cell division pro 96.9 0.00052 1.8E-08 54.5 3.0 90 62-160 376-477 (503)
414 2oap_1 GSPE-2, type II secreti 96.9 0.00053 1.8E-08 54.9 3.0 21 15-35 262-282 (511)
415 1gtv_A TMK, thymidylate kinase 96.9 0.00022 7.4E-09 50.2 0.7 20 15-34 2-21 (214)
416 1e6c_A Shikimate kinase; phosp 96.9 0.00062 2.1E-08 46.1 3.0 20 15-34 4-23 (173)
417 1in4_A RUVB, holliday junction 96.9 0.00055 1.9E-08 51.8 2.9 20 15-34 53-72 (334)
418 1nij_A Hypothetical protein YJ 96.9 0.00047 1.6E-08 51.8 2.5 22 15-36 6-27 (318)
419 2iyv_A Shikimate kinase, SK; t 96.8 0.00065 2.2E-08 46.6 2.9 20 15-34 4-23 (184)
420 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00076 2.6E-08 44.9 3.1 20 15-34 25-44 (149)
421 3umf_A Adenylate kinase; rossm 96.8 0.00072 2.5E-08 47.9 3.1 19 16-34 32-50 (217)
422 1iy2_A ATP-dependent metallopr 96.8 0.00068 2.3E-08 49.8 3.1 20 16-35 76-95 (278)
423 1zuh_A Shikimate kinase; alpha 96.8 0.0008 2.7E-08 45.4 3.2 20 15-34 9-28 (168)
424 2grj_A Dephospho-COA kinase; T 96.8 0.00088 3E-08 46.5 3.5 24 11-34 10-33 (192)
425 1sxj_E Activator 1 40 kDa subu 96.8 0.0017 5.8E-08 49.3 5.4 20 16-35 39-58 (354)
426 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0009 3.1E-08 48.8 3.6 21 14-34 5-25 (260)
427 3end_A Light-independent proto 96.8 0.046 1.6E-06 40.6 12.9 67 61-129 156-225 (307)
428 3euj_A Chromosome partition pr 96.8 0.0007 2.4E-08 53.7 3.0 22 14-35 30-51 (483)
429 3j16_B RLI1P; ribosome recycli 96.8 0.001 3.5E-08 54.4 3.9 38 153-197 220-257 (608)
430 3nwj_A ATSK2; P loop, shikimat 96.7 0.00078 2.7E-08 48.8 2.8 21 14-34 49-69 (250)
431 1n0w_A DNA repair protein RAD5 96.7 0.0009 3.1E-08 47.9 3.1 21 15-35 26-46 (243)
432 1cr0_A DNA primase/helicase; R 96.7 0.00081 2.8E-08 49.9 2.9 21 15-35 37-57 (296)
433 2dpy_A FLII, flagellum-specifi 96.7 0.00083 2.9E-08 52.7 3.1 21 15-35 159-179 (438)
434 3bk7_A ABC transporter ATP-bin 96.7 0.00087 3E-08 54.8 3.2 39 152-197 226-264 (607)
435 2cvh_A DNA repair and recombin 96.7 0.00093 3.2E-08 47.0 3.0 21 15-35 22-42 (220)
436 2p65_A Hypothetical protein PF 96.7 0.00074 2.5E-08 46.0 2.4 22 13-34 43-64 (187)
437 1lv7_A FTSH; alpha/beta domain 96.7 0.00097 3.3E-08 48.3 3.1 21 14-34 46-66 (257)
438 4eaq_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 46.8 3.8 23 12-34 25-47 (229)
439 1m7g_A Adenylylsulfate kinase; 96.7 0.0013 4.5E-08 46.2 3.6 22 13-34 25-46 (211)
440 3bos_A Putative DNA replicatio 96.7 0.0011 3.9E-08 47.1 3.3 22 13-34 52-73 (242)
441 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.9E-08 45.6 3.5 20 15-34 4-23 (208)
442 3gmt_A Adenylate kinase; ssgci 96.6 0.0014 4.6E-08 46.9 3.3 23 12-34 7-29 (230)
443 1a7j_A Phosphoribulokinase; tr 96.6 0.00075 2.6E-08 50.1 2.0 23 12-34 4-26 (290)
444 2w58_A DNAI, primosome compone 96.6 0.0014 4.9E-08 45.6 3.3 21 14-34 55-75 (202)
445 3n70_A Transport activator; si 96.6 0.0014 4.8E-08 43.2 3.0 24 12-35 23-46 (145)
446 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0013 4.3E-08 50.5 3.1 29 164-197 287-321 (365)
447 1q3t_A Cytidylate kinase; nucl 96.6 0.0017 5.9E-08 46.5 3.6 24 11-34 14-37 (236)
448 1ltq_A Polynucleotide kinase; 96.6 0.0016 5.5E-08 48.3 3.5 22 14-35 3-24 (301)
449 2iw3_A Elongation factor 3A; a 96.5 0.0015 5E-08 56.1 3.4 39 152-197 546-584 (986)
450 1svm_A Large T antigen; AAA+ f 96.5 0.0014 4.8E-08 50.4 3.0 22 13-34 169-190 (377)
451 1nlf_A Regulatory protein REPA 96.5 0.0014 4.7E-08 48.2 2.9 21 15-35 32-52 (279)
452 2h92_A Cytidylate kinase; ross 96.5 0.0015 5E-08 46.1 2.9 23 12-34 2-24 (219)
453 3syl_A Protein CBBX; photosynt 96.5 0.0022 7.6E-08 47.6 3.9 24 11-34 65-88 (309)
454 3zvl_A Bifunctional polynucleo 96.5 0.0026 8.8E-08 49.7 4.3 23 12-34 257-279 (416)
455 3crm_A TRNA delta(2)-isopenten 96.5 0.0023 7.7E-08 48.1 3.8 21 14-34 6-26 (323)
456 2iw3_A Elongation factor 3A; a 96.4 0.0017 5.8E-08 55.7 3.3 39 152-197 899-937 (986)
457 1njg_A DNA polymerase III subu 96.4 0.0018 6.2E-08 45.9 3.0 20 15-34 47-66 (250)
458 4fcw_A Chaperone protein CLPB; 96.4 0.0028 9.7E-08 47.1 4.2 24 12-35 46-69 (311)
459 2chg_A Replication factor C sm 96.4 0.0019 6.6E-08 45.1 3.0 20 15-34 40-59 (226)
460 3b9p_A CG5977-PA, isoform A; A 96.4 0.002 6.7E-08 47.7 3.2 24 12-35 53-76 (297)
461 3qks_A DNA double-strand break 96.4 0.0021 7.1E-08 45.0 3.1 20 15-34 25-44 (203)
462 2px0_A Flagellar biosynthesis 96.4 0.002 6.8E-08 47.9 3.1 86 60-153 181-273 (296)
463 3t15_A Ribulose bisphosphate c 96.4 0.0026 9E-08 47.1 3.8 22 13-34 36-57 (293)
464 3h4m_A Proteasome-activating n 96.4 0.0024 8.2E-08 46.9 3.5 23 12-34 50-72 (285)
465 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0026 8.9E-08 46.0 3.6 22 13-34 39-60 (262)
466 2qmh_A HPR kinase/phosphorylas 96.4 0.0022 7.5E-08 44.7 2.9 25 12-36 33-57 (205)
467 1tue_A Replication protein E1; 96.3 0.002 6.7E-08 45.1 2.7 22 13-34 58-79 (212)
468 3exa_A TRNA delta(2)-isopenten 96.3 0.0029 1E-07 47.3 3.7 23 13-35 3-25 (322)
469 2dr3_A UPF0273 protein PH0284; 96.3 0.0022 7.5E-08 45.9 3.0 20 15-34 25-44 (247)
470 3cf0_A Transitional endoplasmi 96.3 0.0027 9.4E-08 47.2 3.5 23 13-35 49-71 (301)
471 1tf7_A KAIC; homohexamer, hexa 96.3 0.002 6.7E-08 51.9 2.9 19 15-33 41-59 (525)
472 1pzn_A RAD51, DNA repair and r 96.3 0.0021 7.2E-08 48.9 2.9 21 15-35 133-153 (349)
473 1d2n_A N-ethylmaleimide-sensit 96.3 0.0037 1.3E-07 45.7 4.0 25 11-35 62-86 (272)
474 1vma_A Cell division protein F 96.3 0.0025 8.6E-08 47.6 3.1 87 61-154 186-284 (306)
475 1l8q_A Chromosomal replication 96.3 0.0024 8E-08 48.0 3.0 21 14-34 38-58 (324)
476 1p5z_B DCK, deoxycytidine kina 96.3 0.0019 6.4E-08 47.1 2.3 24 11-34 22-45 (263)
477 3co5_A Putative two-component 96.2 0.0015 5.1E-08 43.0 1.5 22 13-34 27-48 (143)
478 1azs_C GS-alpha; complex (lyas 96.2 0.0035 1.2E-07 48.6 3.7 26 9-34 36-61 (402)
479 3d3q_A TRNA delta(2)-isopenten 96.2 0.0029 9.8E-08 47.9 3.0 21 14-34 8-28 (340)
480 2qby_A CDC6 homolog 1, cell di 96.2 0.0028 9.7E-08 48.3 3.0 23 13-35 45-67 (386)
481 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0044 1.5E-07 47.1 3.9 23 12-34 23-45 (359)
482 1qhl_A Protein (cell division 96.2 0.00036 1.2E-08 49.8 -2.0 20 16-35 30-49 (227)
483 3tqf_A HPR(Ser) kinase; transf 96.1 0.0038 1.3E-07 42.4 3.1 24 13-36 16-39 (181)
484 1sxj_C Activator 1 40 kDa subu 96.1 0.0032 1.1E-07 47.6 3.0 20 16-35 49-68 (340)
485 1ofh_A ATP-dependent HSL prote 96.1 0.0034 1.1E-07 46.5 3.1 22 13-34 50-71 (310)
486 3cr8_A Sulfate adenylyltranfer 96.1 0.0021 7.1E-08 52.0 2.0 23 12-34 368-390 (552)
487 1fnn_A CDC6P, cell division co 96.1 0.0037 1.3E-07 47.9 3.3 21 15-35 46-66 (389)
488 3ux8_A Excinuclease ABC, A sub 96.1 0.0024 8.3E-08 52.9 2.3 40 152-198 541-583 (670)
489 3qkt_A DNA double-strand break 96.1 0.0036 1.2E-07 47.4 3.1 28 165-197 263-290 (339)
490 1c9k_A COBU, adenosylcobinamid 96.1 0.0039 1.3E-07 42.7 3.0 21 16-36 2-22 (180)
491 3uc9_A Increased recombination 96.1 0.013 4.6E-07 41.5 5.7 154 12-174 28-200 (233)
492 1e69_A Chromosome segregation 96.1 0.0028 9.5E-08 47.7 2.4 32 161-197 224-259 (322)
493 4edh_A DTMP kinase, thymidylat 96.1 0.0051 1.8E-07 43.4 3.6 24 11-34 4-27 (213)
494 3eie_A Vacuolar protein sortin 96.0 0.0046 1.6E-07 46.4 3.6 23 12-34 50-72 (322)
495 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0046 1.6E-07 46.5 3.5 24 12-35 44-67 (322)
496 4aby_A DNA repair protein RECN 96.0 0.001 3.5E-08 51.7 -0.1 33 161-198 300-334 (415)
497 4b4t_M 26S protease regulatory 96.0 0.0047 1.6E-07 48.3 3.6 23 12-34 214-236 (434)
498 3foz_A TRNA delta(2)-isopenten 96.0 0.0059 2E-07 45.5 3.9 21 14-34 11-31 (316)
499 2o5v_A DNA replication and rep 96.0 0.004 1.4E-07 47.6 3.1 30 163-197 272-310 (359)
500 3lda_A DNA repair protein RAD5 96.0 0.0037 1.3E-07 48.5 2.9 20 15-34 180-199 (400)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.6e-39 Score=232.19 Aligned_cols=174 Identities=29% Similarity=0.520 Sum_probs=138.5
Q ss_pred CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
|........+++.+||+|+|++|||||||+++|+.+.+...+.+|.|.++.......++..+.+.+|||+|+++++.++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555667899999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+++.++++++|||++++.+|+.+..|+..+.... ++.|+++||||.|+.+. .+.. +...+++..++.|++|||++|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg 160 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG 160 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence 99999999999999999999999999999987764 68999999999999763 4443 456899999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 029077 158 YNFEKPFLYLARKLAGD 174 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~ 174 (199)
.||+++|..|++.+...
T Consensus 161 ~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 161 YNVKQLFRRVAAALPGM 177 (216)
T ss_dssp BSHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999988643
No 2
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.9e-36 Score=218.62 Aligned_cols=191 Identities=79% Similarity=1.287 Sum_probs=172.9
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.+......+||+++|.+|||||||+++|+.+.+...+.++.|.+........++..+.+.+||++|++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 34556788999999999999999999988888888888999999999888888889999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+|++++|||++++.++..+..|+..+....++.|+++|+||+|+.+.....+...+++..++.++++||++|.|++++|.
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999999998889999999999999876666666678888899999999999999999999
Q ss_pred HHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 166 YLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 166 ~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
+|.+.+...+.....+.|...+++..++...
T Consensus 168 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (221)
T 3gj0_A 168 WLARKLIGDPNLEFVAMPALAPPEVVMDPAL 198 (221)
T ss_dssp HHHHHHHTCTTCCEEECCCBCCCSSCCCHHH
T ss_pred HHHHHHHhCcccccccCCCCCCCCCCcchhh
Confidence 9999999999999999998888777665543
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=202.74 Aligned_cols=171 Identities=33% Similarity=0.522 Sum_probs=139.1
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
++......+||+|+|++|||||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+...+..++++
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 44455667999999999999999999999888877788888877777777778888999999999999999989999999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCC-cEEEeccCCCCChH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNL-QYYEISAKSNYNFE 161 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~-~~~~~s~~~~~~v~ 161 (199)
+|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..++ .++++||++|.|++
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 999999999999999999999999988775 67999999999999763 333 345678888898 99999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 029077 162 KPFLYLARKLAGDPN 176 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~ 176 (199)
++|.+|++.+.+...
T Consensus 182 ~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 182 EAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876544
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=8.9e-34 Score=203.78 Aligned_cols=170 Identities=20% Similarity=0.338 Sum_probs=141.8
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
+...+..+||+|+|.+|||||||+++|..+.+...+.+|.+.++ ......++..+.+.+||++|++.+...+..+++++
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 35557889999999999999999999999998888888988765 44566677889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCC-------------cccc-HHHHHHHHHcCC-cEE
Q 029077 87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVK-AKQVTFHRKKNL-QYY 150 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~~-~~~~~~~~~~~~-~~~ 150 (199)
|++|+|||++++.++.. +..|+..+....++.|+++|+||+|+.+ +... .+...+++..++ +++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL 179 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence 99999999999999998 6899999998888999999999999975 2233 345678888998 899
Q ss_pred EeccCCCCC-hHHHHHHHHHHHhCCCCC
Q 029077 151 EISAKSNYN-FEKPFLYLARKLAGDPNL 177 (199)
Q Consensus 151 ~~s~~~~~~-v~~~~~~i~~~~~~~~~~ 177 (199)
++||++|.| ++++|.+|++.+......
T Consensus 180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 180 EGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999998 999999999999866543
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.4e-33 Score=195.25 Aligned_cols=169 Identities=32% Similarity=0.520 Sum_probs=143.9
Q ss_pred CCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077 4 PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (199)
Q Consensus 4 ~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (199)
+..++...+.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++
T Consensus 9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 87 (183)
T 3kkq_A 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87 (183)
T ss_dssp -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence 34445667899999999999999999999998888888888887666 55666778889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccC-CCC
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAK-SNY 158 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~-~~~ 158 (199)
+++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...+++..+++++++||+ +|.
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 99999999999999999999999999887643 5789999999999976 3333 34567888889999999999 999
Q ss_pred ChHHHHHHHHHHHhC
Q 029077 159 NFEKPFLYLARKLAG 173 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~ 173 (199)
|++++|.+|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
No 6
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.1e-33 Score=195.94 Aligned_cols=171 Identities=33% Similarity=0.576 Sum_probs=151.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+|+|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999988888888889888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.++... .+...+++..++.++++||++|.|++++|.+|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 57899999999999765544 34567888889999999999999999999999
Q ss_pred HHHHhCCCCCceec
Q 029077 168 ARKLAGDPNLHFVE 181 (199)
Q Consensus 168 ~~~~~~~~~~~~~~ 181 (199)
.+.+.+.+.....+
T Consensus 173 ~~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 173 VEKIIQTPGLWESE 186 (195)
T ss_dssp HHHHHTSGGGTCC-
T ss_pred HHHHHhhhhhhccc
Confidence 99998776554433
No 7
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-32 Score=191.38 Aligned_cols=166 Identities=31% Similarity=0.622 Sum_probs=141.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 44579999999999999999999998888888888988888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHH-HcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~~v~~ 162 (199)
++|||+++..++..+..|+..+.... .+.|+++|+||+|+.++.... +...+++ ..+.+++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999999887654 578999999999998654444 3446666 5678999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 029077 163 PFLYLARKLAGDP 175 (199)
Q Consensus 163 ~~~~i~~~~~~~~ 175 (199)
+|.+|.+.+.+.+
T Consensus 164 l~~~l~~~~~~~~ 176 (177)
T 1wms_A 164 AFEEAVRRVLATE 176 (177)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 8
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=192.42 Aligned_cols=165 Identities=32% Similarity=0.553 Sum_probs=145.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+++|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 34679999999999999999999988888778888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
++|+|++++.++..+..|+..+....++.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|++|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999998888899999999999987643 22 34567888889999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
.+.+...
T Consensus 166 ~~~~~~~ 172 (181)
T 3tw8_B 166 TELVLRA 172 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 9
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.2e-32 Score=194.56 Aligned_cols=168 Identities=32% Similarity=0.530 Sum_probs=142.6
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.+......+||+|+|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..++++
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 34455778999999999999999999999888877777888877777777778888999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+|++++|+|+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..++.++++||++|.|+++
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999887764 58999999999999753 333 345578888899999999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+|.+|++.+.+
T Consensus 174 l~~~l~~~i~~ 184 (191)
T 2a5j_A 174 AFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 10
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=9.6e-33 Score=190.71 Aligned_cols=163 Identities=30% Similarity=0.596 Sum_probs=144.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988888888888887877777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+|+|++++.++..+..|+..+.....+.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|+++++.+|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999988887789999999999999753 33 3344577888899999999999999999999999
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98764
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.1e-32 Score=192.37 Aligned_cols=164 Identities=33% Similarity=0.535 Sum_probs=144.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|.+|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 45679999999999999999999998888888888888888777788888889999999999999999899999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE 171 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888765 68999999999999753 333 3456788888999999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|.+.+.+
T Consensus 172 l~~~i~~ 178 (179)
T 1z0f_A 172 AAKKIYQ 178 (179)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9998754
No 12
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.6e-32 Score=194.21 Aligned_cols=167 Identities=25% Similarity=0.407 Sum_probs=144.7
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.+||+++|.+|||||||+++|..+.+...+.+|.+..+.. ....++..+.+.+||++|++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 34667999999999999999999999988888888888866654 56677788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC---ccc-cHHHHHHHHHcCCc-EEEeccCCCCChHH
Q 029077 89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKNLQ-YYEISAKSNYNFEK 162 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~---~~~-~~~~~~~~~~~~~~-~~~~s~~~~~~v~~ 162 (199)
+++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+ +.. ..+...+++..++. ++++||++|.|+++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 9999999999999997 679998888888999999999999974 233 33455788888888 99999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 029077 163 PFLYLARKLAGDPN 176 (199)
Q Consensus 163 ~~~~i~~~~~~~~~ 176 (199)
+|.+|.+.+.....
T Consensus 178 l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 178 VFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999886653
No 13
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-33 Score=196.48 Aligned_cols=164 Identities=34% Similarity=0.607 Sum_probs=145.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999998888888889988888888888888899999999999999988999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999888765 57899999999999753 333 34456777888999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
++.+.+.
T Consensus 184 ~~~i~~~ 190 (201)
T 2ew1_A 184 ACRLISE 190 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 14
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8.6e-33 Score=191.22 Aligned_cols=163 Identities=33% Similarity=0.593 Sum_probs=143.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++.+||+++|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988888888888888888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887764 68999999999998653 333 34557788889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1r2q_A 164 AKKLPK 169 (170)
T ss_dssp HHTSCC
T ss_pred HHHHhh
Confidence 987653
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=3.1e-32 Score=191.99 Aligned_cols=163 Identities=25% Similarity=0.520 Sum_probs=144.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++..+|+++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 44689999999999999999999988888788888888887777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888765 58999999999999763 333 34567888889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 180 ~~~i~~ 185 (189)
T 2gf9_A 180 VDVICE 185 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 16
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-32 Score=193.51 Aligned_cols=162 Identities=21% Similarity=0.398 Sum_probs=135.5
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.....++.+||+++|++|||||||+++|+.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 345668899999999999999999999999988877777743 33 3666778888999999999998766 7788
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCC---Ccccc-HHHHHHHHHcC-CcEEEeccCCCC
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKKN-LQYYEISAKSNY 158 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~---~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~ 158 (199)
+|++++|||++++.+++.+..|+..+.... .+.|+++|+||.|+. .+... .+...++...+ +.++++||++|.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 999999999999999999999999998764 579999999999984 23333 34457888886 899999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 029077 159 NFEKPFLYLARKLAGD 174 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~ 174 (199)
|++++|.+|++.+.+.
T Consensus 166 gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 166 NVERVFQDVAQKVVAL 181 (184)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.6e-32 Score=189.98 Aligned_cols=163 Identities=29% Similarity=0.533 Sum_probs=137.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999988888788888888887777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887654 57999999999999763 333 34567888889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998764
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=192.53 Aligned_cols=166 Identities=30% Similarity=0.548 Sum_probs=148.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 35679999999999999999999999888888888988888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.+
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887775 478999999999997543 33 3456788889999999999999999999999
Q ss_pred HHHHHhCCC
Q 029077 167 LARKLAGDP 175 (199)
Q Consensus 167 i~~~~~~~~ 175 (199)
|.+.+.+..
T Consensus 173 l~~~i~~~~ 181 (196)
T 3tkl_A 173 MAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999987544
No 19
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.8e-32 Score=189.67 Aligned_cols=163 Identities=28% Similarity=0.551 Sum_probs=138.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999888877788888877777777778888999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
|+|++++.++..+..|+..+.... ++.|+++|+||+|+.++.... +...+++..+++++++||++|.|++++|.+|.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999888765 579999999999996654444 345778888999999999999999999999999
Q ss_pred HHhCC
Q 029077 170 KLAGD 174 (199)
Q Consensus 170 ~~~~~ 174 (199)
.+.+.
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88654
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=190.52 Aligned_cols=161 Identities=33% Similarity=0.597 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 56899999999999999999999888888888899888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc----ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~----~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998887765 68999999999998643 233 334577788899999999999999999999
Q ss_pred HHHHHHh
Q 029077 166 YLARKLA 172 (199)
Q Consensus 166 ~i~~~~~ 172 (199)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987664
No 21
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=198.67 Aligned_cols=181 Identities=29% Similarity=0.476 Sum_probs=138.9
Q ss_pred CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
|..++........+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444444456779999999999999999999998888877888888887777777888889999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+++.+|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999999999999999999999887764 57899999999999753 333 3455788888999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCceec
Q 029077 158 YNFEKPFLYLARKLAGDPNLHFVE 181 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~~~~~~~~ 181 (199)
.|++++|.+|++.+.+.......+
T Consensus 161 ~gi~~l~~~l~~~i~~~~~~~~~~ 184 (223)
T 3cpj_B 161 ENVDKAFEELINTIYQKVSKHQMD 184 (223)
T ss_dssp CCHHHHHHHHHHHHTTCC------
T ss_pred CCHHHHHHHHHHHHHHHhhhcccC
Confidence 999999999999998765554443
No 22
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=193.40 Aligned_cols=164 Identities=21% Similarity=0.341 Sum_probs=136.2
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
...++.+||+++|.+|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.++.. ..+++.+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3446789999999999999999999999888888888888665 345566778899999999999988775 56889999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEecc-CCCCCh
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISA-KSNYNF 160 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~-~~~~~v 160 (199)
++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...+++..+++++++|| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999999888764 6899999999999975 3333 3456788888999999999 899999
Q ss_pred HHHHHHHHHHHhC
Q 029077 161 EKPFLYLARKLAG 173 (199)
Q Consensus 161 ~~~~~~i~~~~~~ 173 (199)
+++|..|++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.6e-32 Score=190.99 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|.+|||||||+++|..+.+...+.++.+.++ ......++..+.+.+||++|++.+......+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4579999999999999999999998888888888888776 566677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|++++|.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999887764 47999999999999653 33 34456788899999999999999999999999
Q ss_pred HHHHHhCCC
Q 029077 167 LARKLAGDP 175 (199)
Q Consensus 167 i~~~~~~~~ 175 (199)
|++.+....
T Consensus 163 l~~~~~~~~ 171 (181)
T 3t5g_A 163 IILEAEKMD 171 (181)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999998655
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.7e-32 Score=190.81 Aligned_cols=166 Identities=33% Similarity=0.528 Sum_probs=144.0
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
..+..+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34677999999999999999999999888887777888888877777788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999999888765 58999999999999653 333 345578888899999999999999999999
Q ss_pred HHHHHHhCC
Q 029077 166 YLARKLAGD 174 (199)
Q Consensus 166 ~i~~~~~~~ 174 (199)
+|.+.+...
T Consensus 168 ~l~~~~~~~ 176 (181)
T 2efe_B 168 EIARRLPRV 176 (181)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhc
Confidence 999887654
No 25
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.1e-32 Score=192.19 Aligned_cols=166 Identities=26% Similarity=0.455 Sum_probs=142.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccccccccCCcE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
.++.+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+++ ..+.+.+||++|++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999998887777778888777777777765 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc---CCCc-EEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p-~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+++|||++++.++..+..|+..+.... .+.| +++|+||+|+.+. ... .+...+++..+++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999998887653 2556 7899999999763 333 344577888899999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 029077 163 PFLYLARKLAGDP 175 (199)
Q Consensus 163 ~~~~i~~~~~~~~ 175 (199)
+|.+|.+.+.+.+
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987665
No 26
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.1e-32 Score=187.89 Aligned_cols=162 Identities=28% Similarity=0.515 Sum_probs=143.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||+++|..+.+...+.++.|.+.........+..+.+.+||+||.+.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 35699999999999999999999998888888899998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|++++.++..+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999999988876 367899999999999763 333 34457788889999999999999999999999
Q ss_pred HHHHh
Q 029077 168 ARKLA 172 (199)
Q Consensus 168 ~~~~~ 172 (199)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 98774
No 27
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-32 Score=192.05 Aligned_cols=162 Identities=24% Similarity=0.370 Sum_probs=140.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..+++++|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4679999999999999999999998888777778876554 345566777899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEecc
Q 029077 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISA 154 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~ 154 (199)
+|||++++.++..+. .|+..+....++.|+++|+||+|+.+. ... .+...+++..++ +++++||
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 999999999999987 799999888789999999999999753 222 344577878887 8999999
Q ss_pred CCCCChHHHHHHHHHHHhC
Q 029077 155 KSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~ 173 (199)
++|.|++++|.+|++.+..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-32 Score=193.66 Aligned_cols=165 Identities=29% Similarity=0.495 Sum_probs=145.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+|+|++|||||||+++|..+.+...+.++.|.++......+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45799999999999999999999988888788899998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|+++..++..+..|+..+.... ++.|+++|+||+|+.+ +.. ..+...+++..+++++++||++|.|++++|.+|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 9999999999999999999888765 5799999999999975 333 334567888889999999999999999999999
Q ss_pred HHHHhCCC
Q 029077 168 ARKLAGDP 175 (199)
Q Consensus 168 ~~~~~~~~ 175 (199)
.+.+.+.+
T Consensus 181 ~~~i~~~~ 188 (192)
T 2fg5_A 181 SRQIPPLD 188 (192)
T ss_dssp HHTCC---
T ss_pred HHHHHhhC
Confidence 99876543
No 29
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2e-32 Score=192.99 Aligned_cols=166 Identities=30% Similarity=0.552 Sum_probs=139.6
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-ccccccccC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIH 85 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~ 85 (199)
....++.+||+|+|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+. ..+..++++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 3445678999999999999999999999888888888888888877778888888999999999999887 778888999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC---C
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN---Y 158 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~---~ 158 (199)
+|++|+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++| .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999999999988764 67999999999999753 333 3445788888999999999999 9
Q ss_pred ChHHHHHHHHHHHh
Q 029077 159 NFEKPFLYLARKLA 172 (199)
Q Consensus 159 ~v~~~~~~i~~~~~ 172 (199)
|++++|.+|++.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 30
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=191.88 Aligned_cols=164 Identities=29% Similarity=0.514 Sum_probs=144.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|++|||||||+++|..+.+...+.++.|.++......+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999999998888878888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++|.+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 181 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887764 57899999999999763 333 3455778888999999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|.+.+.+
T Consensus 182 l~~~i~~ 188 (193)
T 2oil_A 182 VLKEIFA 188 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 31
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=194.17 Aligned_cols=170 Identities=24% Similarity=0.299 Sum_probs=135.1
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-ccccccc
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYI 84 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~ 84 (199)
.+......+||+++|++|||||||+++|..........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 95 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ 95 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence 445567789999999999999999999764333333444555555556667788889999999999987664 6677788
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCCh
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.+|++|+|||++++.+|..+..|+..+.... .+.|+++|+||+|+.+ +.+.. +...+++..++.++++||++|.|+
T Consensus 96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 9999999999999999999999999887765 4799999999999975 33333 445788888899999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 029077 161 EKPFLYLARKLAGDP 175 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~ 175 (199)
+++|.+|++.+....
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887543
No 32
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.2e-32 Score=187.90 Aligned_cols=167 Identities=28% Similarity=0.555 Sum_probs=136.5
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
.....+||+++|++|||||||+++|..+.+. ..+.++.+.++.......++..+.+.+||+||++.+...+..++.++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3466799999999999999999999887774 466778888877777777888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999888765 58999999999999763 333 34457778889999999999999999999
Q ss_pred HHHHHHHhCCC
Q 029077 165 LYLARKLAGDP 175 (199)
Q Consensus 165 ~~i~~~~~~~~ 175 (199)
.+|.+.+.+..
T Consensus 166 ~~l~~~~~~~~ 176 (180)
T 2g6b_A 166 TAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999887543
No 33
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.4e-32 Score=192.66 Aligned_cols=163 Identities=29% Similarity=0.559 Sum_probs=115.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 34699999999999999999999888777778888888887777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887764 57999999999999763 333 34567888889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 166 ~~~i~~ 171 (183)
T 2fu5_C 166 ARDIKA 171 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 34
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=195.02 Aligned_cols=166 Identities=27% Similarity=0.511 Sum_probs=132.6
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
....+.+||+|+|++|||||||+++|+.+.+...+.++.|.++......+++..+.+.+||++|++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 33466799999999999999999999988887788888888887778888888899999999999999888889999999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-------cccc-HHHHHHHHHcCCcEEEeccCCCC
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQVK-AKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-------~~~~-~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 9999999999999999999999887764 5799999999999852 2333 34457788889999999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 029077 159 NFEKPFLYLARKLAG 173 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~ 173 (199)
|++++|.+|++.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998864
No 35
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.2e-32 Score=191.21 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+++|++|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999998888877888887655 34556677889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEec
Q 029077 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s 153 (199)
++|||++++.++..+ ..|+..+....++.|+++|+||.|+.+. .+. .+...+++..+ .+++++|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 999999999999988 6899988887789999999999999742 233 33456777776 6899999
Q ss_pred cC-CCCChHHHHHHHHHHHhC
Q 029077 154 AK-SNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 154 ~~-~~~~v~~~~~~i~~~~~~ 173 (199)
|+ +|.|++++|..+++.+..
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998764
No 36
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.9e-32 Score=186.23 Aligned_cols=161 Identities=32% Similarity=0.567 Sum_probs=138.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++.+||+++|.+|||||||+++|..+.+...+.++.+.... .....++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999988887778888875543 45566778899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHc-CCcEEEeccCCCCChHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~ 165 (199)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. .. .+...+++.. +.+++++||++|.|+++++.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 9999999999999999998887753 589999999999997633 32 3445677776 78999999999999999999
Q ss_pred HHHHHHh
Q 029077 166 YLARKLA 172 (199)
Q Consensus 166 ~i~~~~~ 172 (199)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998774
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=194.03 Aligned_cols=167 Identities=28% Similarity=0.555 Sum_probs=136.8
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
+......+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34456679999999999999999999988887777788888888888888888889999999999999988889999999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHc-CCcEEEeccCCCCChHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK-NLQYYEISAKSNYNFEK 162 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~~ 162 (199)
|++|+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. .... +...+++.. +..++++||++|.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999998887765 47999999999999753 3333 345666663 78999999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+|.+|.+.+.+
T Consensus 180 l~~~l~~~i~~ 190 (192)
T 2il1_A 180 IFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 38
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.4e-32 Score=189.94 Aligned_cols=166 Identities=27% Similarity=0.480 Sum_probs=141.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
.++.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 35689999999999999999999998888777777776444 44556677889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEec
Q 029077 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s 153 (199)
++|||++++.++..+. .|+..+....++.|+++|+||+|+.+. ... .+...+++..+. +++++|
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 9999999999999887 799888887789999999999998653 122 234567777887 899999
Q ss_pred cCCCCChHHHHHHHHHHHhCCCC
Q 029077 154 AKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
|++|.|++++|.+|.+.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCCC
T ss_pred CCCccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999876553
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.3e-32 Score=192.28 Aligned_cols=166 Identities=29% Similarity=0.532 Sum_probs=146.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45699999999999999999999998888888888888888777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887765 57999999999999763 333 34457788889999999999999999999999
Q ss_pred HHHHhCCCC
Q 029077 168 ARKLAGDPN 176 (199)
Q Consensus 168 ~~~~~~~~~ 176 (199)
.+.+.+...
T Consensus 166 ~~~i~~~~~ 174 (206)
T 2bcg_Y 166 ARQIKESMS 174 (206)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 998875443
No 40
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-32 Score=191.82 Aligned_cols=163 Identities=26% Similarity=0.534 Sum_probs=144.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35699999999999999999999988888888888888888888888888899999999999999988899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999888765 57999999999999763 333 34457788889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 166 ~~~i~~ 171 (203)
T 1zbd_A 166 VDVICE 171 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 41
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.2e-31 Score=191.42 Aligned_cols=166 Identities=34% Similarity=0.639 Sum_probs=144.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35679999999999999999999998888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHH-HcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~~v~~ 162 (199)
|+|+|++++.++..+..|+..+.... .+.|+++|+||.|+.++.... +...++. ..+++++++||++|.|+++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999999887664 478999999999998654443 3445665 6678999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 029077 163 PFLYLARKLAGDP 175 (199)
Q Consensus 163 ~~~~i~~~~~~~~ 175 (199)
+|.+|++.+.+.+
T Consensus 165 l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 165 AFQTIARNALKQE 177 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887543
No 42
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.1e-32 Score=190.22 Aligned_cols=164 Identities=32% Similarity=0.588 Sum_probs=144.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999988888888888888888778888888899999999999999988899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...++...+++++++||++|.|++++|.++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999998887764 6799999999999965 3333 34567888889999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
.+.+.+.
T Consensus 168 ~~~~~~~ 174 (186)
T 2bme_A 168 ARKILNK 174 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 43
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.9e-32 Score=187.97 Aligned_cols=166 Identities=30% Similarity=0.508 Sum_probs=142.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
+.++.+||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+||++|++.+...+..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 4567899999999999999999999988888888888876655 555667778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
+++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 999999999999999999998885543 57999999999999763 333 34457778889999999999999999999
Q ss_pred HHHHHHHhCCC
Q 029077 165 LYLARKLAGDP 175 (199)
Q Consensus 165 ~~i~~~~~~~~ 175 (199)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999887543
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.8e-32 Score=185.95 Aligned_cols=162 Identities=30% Similarity=0.528 Sum_probs=137.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++.+||+++|++|||||||+++|..+.+...+.++.+.... .....++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 56799999999999999999999988887777777765543 44566777899999999999998888899999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|||++++.++..+..|+..+..... +.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|++++|.+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999998887754 8999999999999753 33 33455778888899999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=5.2e-32 Score=188.86 Aligned_cols=165 Identities=30% Similarity=0.566 Sum_probs=143.3
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
.+++.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..++.++|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34677999999999999999999999888888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998887664 57999999999999753 332 344577778889999999999999999999
Q ss_pred HHHHHHhC
Q 029077 166 YLARKLAG 173 (199)
Q Consensus 166 ~i~~~~~~ 173 (199)
+|.+.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99987643
No 46
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1e-31 Score=191.21 Aligned_cols=165 Identities=28% Similarity=0.456 Sum_probs=139.2
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
.+....+||+++|.+|||||||+++|..+.+...+.++.+.++.. ....++..+.+.+||++|++.+...+..+++++|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 455677999999999999999999999888877777777655443 3566777899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEE
Q 029077 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYE 151 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~ 151 (199)
++++|||++++.++..+ ..|...+....++.|+++|+||+|+.+. ... .+...+++..+. .+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999988 6788888887789999999999999753 122 234567777787 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+||++|.|++++|.+|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=193.65 Aligned_cols=167 Identities=23% Similarity=0.320 Sum_probs=138.1
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
+..+.+||+|+|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 346789999999999999999999999888888888887666 5555556677899999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
+++|||+++..++..+..|+..+.... .++|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999887763 47899999999999753 333 34567888899999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 029077 165 LYLARKLAGDPN 176 (199)
Q Consensus 165 ~~i~~~~~~~~~ 176 (199)
.+|.+.+.+...
T Consensus 179 ~~l~~~i~~~~~ 190 (201)
T 3oes_A 179 TKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhhhh
Confidence 999999876543
No 48
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.6e-32 Score=194.45 Aligned_cols=165 Identities=27% Similarity=0.457 Sum_probs=139.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+..+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 5679999999999999999999998888877888877544 345566778899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc----------ccHHHHHHHHHcCC-cEEEeccCCCC
Q 029077 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY 158 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
+|||++++.++..+. .|+..+....++.|+++|+||.|+.+.. ...+...++...+. +++++||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 999999999999987 7999998887899999999999986532 23344577777886 89999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 029077 159 NFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~ 176 (199)
|++++|.+|++.+.+...
T Consensus 166 gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp THHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHhhhhh
Confidence 999999999999986653
No 49
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=193.18 Aligned_cols=164 Identities=31% Similarity=0.581 Sum_probs=134.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45789999999999999999999988887777788887777777777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..++.++++||++|.|++++|.+|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887754 58999999999999753 333 34567888889999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
++.+.++
T Consensus 183 ~~~i~~~ 189 (200)
T 2o52_A 183 ARTILNK 189 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988653
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=8.8e-32 Score=186.18 Aligned_cols=161 Identities=24% Similarity=0.313 Sum_probs=124.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII 91 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 91 (199)
.+||+++|++|||||||+++|..........++.+.+........++..+.+.+||++|++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999876666555555555666666777788889999999999988776 66677889999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|||+++++++..+..|+..+..... +.|+++|+||.|+.+ +... .+...+++..+++++++||++|.|++++|.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999888764 899999999999974 3333 34457888899999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+..
T Consensus 162 ~~~i~~ 167 (169)
T 3q85_A 162 VRQIRL 167 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 51
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=191.03 Aligned_cols=166 Identities=25% Similarity=0.369 Sum_probs=132.2
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
......+||+++|.+|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 4557789999999999999999999998887777777776444 445566777899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEE
Q 029077 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYE 151 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~ 151 (199)
++++|||++++.++..+. .|+..+....++.|+++|+||+|+.+. ... .+...++...+. ++++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999987 799999888789999999999998652 222 344567777777 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhCC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+||++|.|++++|.+|.+.+.+.
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999987643
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-33 Score=197.69 Aligned_cols=165 Identities=26% Similarity=0.516 Sum_probs=146.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|.+|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 35678999999999999999999998888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 179 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER 179 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998865 68999999999999753 333 3445788888999999999999999999999
Q ss_pred HHHHHhCC
Q 029077 167 LARKLAGD 174 (199)
Q Consensus 167 i~~~~~~~ 174 (199)
|.+.+.+.
T Consensus 180 l~~~i~~~ 187 (191)
T 3dz8_A 180 LVDAICDK 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988653
No 53
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-32 Score=193.13 Aligned_cols=163 Identities=24% Similarity=0.414 Sum_probs=138.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35679999999999999999999999888887888887665 34556677889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEec
Q 029077 90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s 153 (199)
|+|||++++.++..+ ..|+..+....++.|+++|+||+|+.+. .+. .+...+++..+ ..++++|
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 999999999999998 6899988887789999999999999742 233 33457777776 6899999
Q ss_pred cC-CCCChHHHHHHHHHHHhC
Q 029077 154 AK-SNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 154 ~~-~~~~v~~~~~~i~~~~~~ 173 (199)
|+ +|.|++++|..|++.+..
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHhh
Confidence 99 689999999999988763
No 54
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=193.87 Aligned_cols=167 Identities=28% Similarity=0.501 Sum_probs=120.8
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
+...+.+||+++|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++.++|
T Consensus 29 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 29 PPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp ---CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEE
T ss_pred CCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 3446789999999999999999999998887777777775443 445666778899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------cc-HHHHHHHHHcCC-cEEE
Q 029077 88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYE 151 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~ 151 (199)
++++|||++++.++..+. .|+..+....++.|+++|+||+|+.+.. +. .+...+++..++ ++++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 999999999999999986 7999988887899999999999997532 22 234577778887 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhCCC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
+||++|.|++++|.+|++.+.+.+
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=191.06 Aligned_cols=168 Identities=29% Similarity=0.508 Sum_probs=142.4
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.+...++.+||+|+|++|||||||+++|..+.+...+.++.+... ...+.+++..+.+.+||++|++.+...+..++..
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 85 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS 85 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh
Confidence 344567889999999999999999999998888777778877554 3455667778899999999999998888999999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|++++|||+++..++..+..|+..+..... +.|+++|+||.|+.+. ... .+...++...+++++++||++|.|++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999999887754 8999999999999763 333 34557788888999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029077 162 KPFLYLARKLAGD 174 (199)
Q Consensus 162 ~~~~~i~~~~~~~ 174 (199)
++|.+|.+.+.+.
T Consensus 166 ~l~~~l~~~i~~~ 178 (206)
T 2bov_A 166 KVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988653
No 56
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-31 Score=191.28 Aligned_cols=166 Identities=28% Similarity=0.527 Sum_probs=143.1
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
.....++|+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34567999999999999999999999888877788888888877777778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+..+.... +...++...+++++++||++|.|++++|.+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887765 378999999999996554443 345677888899999999999999999999
Q ss_pred HHHHHhCC
Q 029077 167 LARKLAGD 174 (199)
Q Consensus 167 i~~~~~~~ 174 (199)
|.+.+.+.
T Consensus 176 l~~~~~~~ 183 (213)
T 3cph_A 176 LAKLIQEK 183 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888643
No 57
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.9e-32 Score=194.30 Aligned_cols=176 Identities=45% Similarity=0.825 Sum_probs=146.3
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccccccccccCC
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.........+. .+.+.+||++|++.+......++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 34567899999999999999999998888888888888887777776655444 48999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-cccHH-HHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
|++|+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+. ....+ ...++...+++++++||++|.|++++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 999999999999999999999998887764 5899999999999764 33333 34777788899999999999999999
Q ss_pred HHHHHHHHhCCCCCceecCC
Q 029077 164 FLYLARKLAGDPNLHFVESP 183 (199)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~p 183 (199)
|.+|.+.+.+.........+
T Consensus 166 ~~~l~~~~~~~~~~~~~~~~ 185 (218)
T 4djt_A 166 FLHLARIFTGRPDLIFVSNV 185 (218)
T ss_dssp HHHHHHHHHCCTTCCBCSCC
T ss_pred HHHHHHHHhccccccccccc
Confidence 99999999887766655443
No 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.1e-31 Score=188.08 Aligned_cols=164 Identities=29% Similarity=0.528 Sum_probs=141.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe-eEEEEecCc---------EEEEEEEeCCCcccccccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR 79 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~~~ 79 (199)
....+||+|+|++|||||||+++|..+.+...+.++.+.++. ......++. .+.+.+||+||++.+....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 355799999999999999999999988888788888888776 455555555 7899999999999998888
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccC
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAK 155 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~ 155 (199)
..+++++|++|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999999999999999999999999888765 58999999999999763 333 34457788889999999999
Q ss_pred CCCChHHHHHHHHHHHhC
Q 029077 156 SNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 156 ~~~~v~~~~~~i~~~~~~ 173 (199)
+|.|++++|.+|.+.+.+
T Consensus 168 ~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 59
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.5e-31 Score=181.69 Aligned_cols=162 Identities=28% Similarity=0.517 Sum_probs=138.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
|+.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 4568999999999999999999998887777777766443 445566777889999999999998888888999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|+|+++..++..+..|+..+..... +.|+++|+||+|+.++.... +...+++..+++++++|+++|.|+++++.+|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999998877654 79999999999998754433 4457788889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 60
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-31 Score=189.84 Aligned_cols=166 Identities=28% Similarity=0.442 Sum_probs=135.3
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
-+.+..+||+++|.+|||||||+++|..+.+...+.++.+..... ....++..+.+.+||+||++.+...+..++.++|
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence 445678999999999999999999999888877777777655543 3566777899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------cc-HHHHHHHHHcCC-cEEE
Q 029077 88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYE 151 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~ 151 (199)
++++|||+++..++..+ ..|+..+....++.|+++|+||+|+.+.. .. .+...++...+. .+++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999988 67888888877899999999999996531 22 234567777777 8999
Q ss_pred eccCCCCChHHHHHHHHHHHhCC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+||++|.|++++|.+|.+.+...
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.9e-31 Score=188.18 Aligned_cols=162 Identities=30% Similarity=0.490 Sum_probs=139.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-----------------------------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK----------------------------- 61 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 61 (199)
...+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999988888888888877777666665544
Q ss_pred --------EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 62 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
..+.+||+||++.+......+++.+|++++|+|++++.++..+..|+..+..... .|+++|+||+|..+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQ 163 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CC
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCccccc
Confidence 8999999999999999999999999999999999999999999999998877654 9999999999954444
Q ss_pred cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 134 VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
.. .+...+++..+++++++||++|.|++++|.+|.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 44 44567888889999999999999999999999988764
No 62
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=5.1e-31 Score=185.85 Aligned_cols=165 Identities=27% Similarity=0.499 Sum_probs=129.8
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
...++.+||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+|
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 4457889999999999999999999998887777777766443 345566777889999999999999899999999999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
++++|||+++..++..+..|+..+.... .+.|+++|+||+|+.++... .+...+++..+++++++||++|.|+++++
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887765 37999999999999775443 34557888889999999999999999999
Q ss_pred HHHHHHHhC
Q 029077 165 LYLARKLAG 173 (199)
Q Consensus 165 ~~i~~~~~~ 173 (199)
.+|.+.+.+
T Consensus 175 ~~l~~~~~~ 183 (190)
T 3con_A 175 YTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.2e-31 Score=187.57 Aligned_cols=164 Identities=27% Similarity=0.549 Sum_probs=127.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
..+.+||+++|++|||||||+++|..+.+...+.++.+.+.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3567999999999999999999999888887788888877777766666 556899999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCc--ccc-HHHHHHHH-HcCCcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVK-AKQVTFHR-KKNLQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~--~~~-~~~~~~~~-~~~~~~~~~s~~~~~~ 159 (199)
+++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++. ..+.+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 999999999999999999998887654 57899999999999542 222 33446666 4678899999999999
Q ss_pred hHHHHHHHHHHHhC
Q 029077 160 FEKPFLYLARKLAG 173 (199)
Q Consensus 160 v~~~~~~i~~~~~~ 173 (199)
++++|.+|.+.+.+
T Consensus 165 i~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 165 VDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.4e-31 Score=184.54 Aligned_cols=161 Identities=28% Similarity=0.515 Sum_probs=138.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
|+.+||+++|++|||||||+++|..+.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777777776433 556667778889999999999999888888999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
+|+|++++.++..+..|...+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|+++++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 9999999999999999988887764 47999999999998653 333 3445778888999999999999999999999
Q ss_pred HHHHHh
Q 029077 167 LARKLA 172 (199)
Q Consensus 167 i~~~~~ 172 (199)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998775
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.1e-31 Score=185.41 Aligned_cols=163 Identities=27% Similarity=0.517 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||+++|..+.+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999998888777777765 444455667778899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
+|||+++..++..+..|...+.... .+.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|.+|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887754 579999999999998755544 4457888889999999999999999999999
Q ss_pred HHHHhCC
Q 029077 168 ARKLAGD 174 (199)
Q Consensus 168 ~~~~~~~ 174 (199)
.+.+...
T Consensus 161 ~~~~~~~ 167 (189)
T 4dsu_A 161 VREIRKH 167 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988643
No 66
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.1e-31 Score=190.54 Aligned_cols=167 Identities=19% Similarity=0.339 Sum_probs=131.5
Q ss_pred CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83 (199)
Q Consensus 5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (199)
+.++......||+|+|.+|||||||+++|..+.+.. .+.+|.+...... +...+.+.+||++|++.+...+..++
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 455677889999999999999999999999888877 7788888655543 34678999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc---------CCCcEEEEEeCCCCCCccccHHHH------HHHHHcCCc
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQ 148 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---------~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~~~~ 148 (199)
+++|++|+|||+++..+|..+..|+..+.... .+.|+++|+||+|+.+.....+.. .+++..++.
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence 99999999999999999999998888776542 289999999999998753322221 112456788
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 149 YYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
++++||++|.|++++|++|.+.+....
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887543
No 67
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.5e-31 Score=186.66 Aligned_cols=165 Identities=29% Similarity=0.517 Sum_probs=139.8
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
...++.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3457789999999999999999999998888777777776554 344566777889999999999999888899999999
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++++|||+++..++..+..|+..+..... +.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 99999999999999999999998887764 8999999999999763 333 3456788888999999999999999999
Q ss_pred HHHHHHHHhC
Q 029077 164 FLYLARKLAG 173 (199)
Q Consensus 164 ~~~i~~~~~~ 173 (199)
|.+|.+.+.+
T Consensus 172 ~~~l~~~i~~ 181 (187)
T 2a9k_A 172 FFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 68
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.3e-32 Score=193.58 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=138.2
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------ccceeEEEeeEEE-EecCcEEEEEEEeCCCccccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG 76 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~ 76 (199)
.....+||+++|++|||||||++. +.+.+...+ .+|.+.++..... ..++..+.+.+||++|++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345679999999999999999975 555555543 3466666666655 567788999999999999999
Q ss_pred ccccccccCCcEEEEEEeCC------ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cE
Q 029077 77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY 149 (199)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~ 149 (199)
..+..+++++|++|+|||++ +.+++..+..|+..+.....+.|+++|+||+|+.+.....+..++++..++ ++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence 99999999999999999999 556777788888877555578999999999999887666667788888898 99
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+++||++|.|++++|.+|.+.+.+.
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=4.1e-32 Score=190.02 Aligned_cols=162 Identities=28% Similarity=0.450 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
+..+||+++|++|||||||+++|..+.+...+.+|.+..+. .....++..+.+.+||++|++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 56799999999999999999999988887777777764432 23344556788899999999999999999999999999
Q ss_pred EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc------------ccHHHHHHHHHcCC-cEEEeccCC
Q 029077 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS 156 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~------------~~~~~~~~~~~~~~-~~~~~s~~~ 156 (199)
+|||++++.++..+. .|+..+....++.|+++|+||+|+.+.. ...+...+++..+. +++++||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 999999999999987 6999888877899999999999986532 22344577777886 899999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 029077 157 NYNFEKPFLYLARKLAG 173 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~~ 173 (199)
|.|++++|.+|.+.+.+
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 70
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3.4e-31 Score=182.71 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=114.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+.+||+++|++|||||||+++|..... ....++.+.++ .....+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 368999999999999999999764433 34445666555 3455678888999999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i 167 (199)
|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 999999999999999999887653 58999999999999753 3333 3457888889999999999999999999999
Q ss_pred HHHHhC
Q 029077 168 ARKLAG 173 (199)
Q Consensus 168 ~~~~~~ 173 (199)
.+.+..
T Consensus 159 ~~~~~~ 164 (166)
T 3q72_A 159 VRQIRL 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.8e-31 Score=183.88 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccccccccCCcE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC 88 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~ 88 (199)
+..+||+++|++|||||||+++|..+.+... .++.|.+.....+.+++..+.+.+||++|++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4579999999999999999999887665433 34566676666777788889999999999887 55666778899999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~ 164 (199)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 58999999999999763 3333 3456777888999999999999999999
Q ss_pred HHHHHHHhC
Q 029077 165 LYLARKLAG 173 (199)
Q Consensus 165 ~~i~~~~~~ 173 (199)
.+|.+.+..
T Consensus 161 ~~l~~~~~~ 169 (175)
T 2nzj_A 161 EGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 72
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=3.9e-31 Score=184.56 Aligned_cols=156 Identities=20% Similarity=0.374 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++.+||+++|++|||||||+++|..+.+.. +.+|.+..+ .....+++..+.+.+||++|++. ..+++++|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 578999999999999999999999888765 667776443 45566677889999999999876 45678899999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCC---CccccH-HHHHHHHHc-CCcEEEeccCCCCChH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKA-KQVTFHRKK-NLQYYEISAKSNYNFE 161 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~---~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~ 161 (199)
+|||++++.++..+..|+..+.... ++.|+++|+||.|+. .+.... +...++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999877665542 478999999999994 233333 345666665 6899999999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
++|.+|++.+..
T Consensus 158 ~lf~~l~~~~~~ 169 (178)
T 2iwr_A 158 RVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.98 E-value=3.6e-32 Score=194.16 Aligned_cols=163 Identities=24% Similarity=0.398 Sum_probs=106.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCcccccccccccccCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG 86 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (199)
...+||+|+|++|||||||+++|..+ .+...+.+|.+.+.....+.+++. .+.+.+||++|++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999998877 677777888887777777777776 89999999999999989999999999
Q ss_pred cEEEEEEeCCChhhHhcHHHHHHHHHhhcC----CCcEEEEEeCCCCCC--cccc-HHHHHHHHHcCCcEEEeccCC-CC
Q 029077 87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY 158 (199)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~p~iiv~~K~D~~~--~~~~-~~~~~~~~~~~~~~~~~s~~~-~~ 158 (199)
|++|+|||++++.++..+..|+..+..... +.|+++|+||+|+.+ +... .+...+++..+++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988754 899999999999976 3333 455678888899999999999 99
Q ss_pred ChHHHHHHHHHHHhC
Q 029077 159 NFEKPFLYLARKLAG 173 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~ 173 (199)
|++++|.+|.+.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 74
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.8e-31 Score=187.51 Aligned_cols=163 Identities=28% Similarity=0.405 Sum_probs=138.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
.++.+||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 45689999999999999999999998888878888887554 44556677889999999999888 67778889999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCC-ChHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNY-NFEKPF 164 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~ 164 (199)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887753 58999999999999763 333 34557788889999999999999 999999
Q ss_pred HHHHHHHhCC
Q 029077 165 LYLARKLAGD 174 (199)
Q Consensus 165 ~~i~~~~~~~ 174 (199)
.+|++.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 75
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=1.2e-31 Score=192.89 Aligned_cols=164 Identities=32% Similarity=0.532 Sum_probs=141.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc----------EEEEEEEeCCCccccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~~ 80 (199)
...+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++. .+.+.+||++|++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45689999999999999999999988887778888887777766666665 78999999999999988889
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKS 156 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~ 156 (199)
.+++.+|++|+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 99999999999999999999999999988776654 57999999999999763 333 345578888899999999999
Q ss_pred CCChHHHHHHHHHHHhCC
Q 029077 157 NYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~~~ 174 (199)
|.|++++|.+|.+.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988653
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=3.9e-31 Score=188.63 Aligned_cols=162 Identities=26% Similarity=0.472 Sum_probs=134.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
..++.+||+++|.+|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+......+++++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 346789999999999999999999998888877777775 3445556677788999999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEe
Q 029077 89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI 152 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~ 152 (199)
+++|||++++.++..+. .|+..+....++.|+++|+||+|+.+.. . ..+...+++..+. +++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 99999999999999987 7999988888899999999999986532 2 2334567777776 49999
Q ss_pred ccCCCCChHHHHHHHHHHH
Q 029077 153 SAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~ 171 (199)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 77
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.4e-31 Score=186.86 Aligned_cols=167 Identities=25% Similarity=0.400 Sum_probs=140.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....++|+++|++|||||||+++|..+.+...+.++.+.+.. .....++..+.+.+||++|++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 356799999999999999999999988887777777775544 3445677788999999999999888888899999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~ 165 (199)
++|||++++.++..+..|+..+.... ++.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888887776653 478999999999998755443 44577788889999999999999999999
Q ss_pred HHHHHHhCCCCC
Q 029077 166 YLARKLAGDPNL 177 (199)
Q Consensus 166 ~i~~~~~~~~~~ 177 (199)
+|.+.+......
T Consensus 164 ~l~~~~~~~~~~ 175 (199)
T 2gf0_A 164 ELLTLETRRNMS 175 (199)
T ss_dssp HHHHHCSSSCEE
T ss_pred HHHHHHhhhhcc
Confidence 999988765433
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-30 Score=180.76 Aligned_cols=161 Identities=25% Similarity=0.422 Sum_probs=134.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+.+||+++|++|||||||+++|..+.+...+.++.+.+.. .....++..+.+.+||+||++.+......++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999988877777777765543 334556677899999999999988888889999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 999999999999888888777653 57999999999998753 333 3445677788899999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|.+.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9987653
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=184.86 Aligned_cols=162 Identities=20% Similarity=0.327 Sum_probs=127.2
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.....+.+||+++|.+|||||||+++|..+. +...+.+|.+...... .+ .++.+.+||++|++.+...+..++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF--KS--SSLSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE--EC--SSCEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE--EE--CCEEEEEEECCCCHHHHHHHHHHHhc
Confidence 3455778999999999999999999988766 4566777777443333 22 34789999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCC
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKS 156 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~ 156 (199)
+|++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+...... ..++.++++||++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 999999999999999999988888877653 5799999999999976543333333332 2356899999999
Q ss_pred CCChHHHHHHHHHHHh
Q 029077 157 NYNFEKPFLYLARKLA 172 (199)
Q Consensus 157 ~~~v~~~~~~i~~~~~ 172 (199)
|.|++++|++|.+.+.
T Consensus 171 ~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp TBTHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999998774
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=6.3e-31 Score=185.22 Aligned_cols=162 Identities=22% Similarity=0.378 Sum_probs=130.9
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.+||+|+|.+|||||||+++|..+.+...+.+|.+.+..... ...+.+.+||++|++.+...+..+++++|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 3456799999999999999999999988887778888887765432 356889999999999999888999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~ 161 (199)
+++|+|+++..++..+..|+..+... ..+.|+++|+||+|+.+.....+.... +...++.++++||++|.|++
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999999999999998888877654 368999999999999764322222211 11234579999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029077 162 KPFLYLARKLAGD 174 (199)
Q Consensus 162 ~~~~~i~~~~~~~ 174 (199)
++|.+|.+.+...
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877543
No 81
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.1e-30 Score=182.10 Aligned_cols=159 Identities=17% Similarity=0.267 Sum_probs=130.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||+++|..+. ...+.+|.+........ ..+.+.+||+||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 578999999999999999999988776 66777888765544433 3588999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..+.. ...+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 170 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence 999999999999998888877654 3689999999999997654333222221 134567999999999999999
Q ss_pred HHHHHHHHhCC
Q 029077 164 FLYLARKLAGD 174 (199)
Q Consensus 164 ~~~i~~~~~~~ 174 (199)
|++|.+.+.++
T Consensus 171 ~~~l~~~i~~~ 181 (186)
T 1ksh_A 171 IDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 82
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=3.1e-31 Score=185.69 Aligned_cols=161 Identities=22% Similarity=0.304 Sum_probs=124.4
Q ss_pred CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc
Q 029077 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (199)
Q Consensus 5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (199)
+.++...+.+||+++|.+|||||||+++|..+.+ ..+.++.|........ .++.+.+||++|++.+...+..+++
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGT
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhc
Confidence 3445667889999999999999999999887776 5666777755433332 3488999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCC
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSN 157 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~ 157 (199)
++|++++|+|+++..++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...++.++++||++|
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 999999999999999999998888887765 3689999999999997643322222221 224557999999999
Q ss_pred CChHHHHHHHHHH
Q 029077 158 YNFEKPFLYLARK 170 (199)
Q Consensus 158 ~~v~~~~~~i~~~ 170 (199)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999998764
No 83
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.7e-30 Score=184.85 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=129.8
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIH 85 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~ 85 (199)
.....+||+|+|++|||||||+++|.... +...+ ++.|.++....+.+++..+.+.+||++|.+. +......+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 34567999999999999999999987533 23332 3456566666677788889999999999876 45556677889
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
++++|+|||++++.+|..+..|...+... ..++|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999998887653 35799999999999975 33333 3346677888999999999999999
Q ss_pred HHHHHHHHHHh
Q 029077 162 KPFLYLARKLA 172 (199)
Q Consensus 162 ~~~~~i~~~~~ 172 (199)
++|.+|++.+.
T Consensus 192 elf~~l~~~i~ 202 (211)
T 2g3y_A 192 ELFEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.8e-31 Score=184.02 Aligned_cols=160 Identities=23% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|.+|||||||+++|..+.+. .+.+|.+........ .++.+.+||++|++.+...+..+++++|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 56799999999999999999998877765 666777644433332 3488999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..... ...+++++++||++|.|++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 168 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence 999999999999999998888765 3689999999999998643333332222 234568999999999999999
Q ss_pred HHHHHHHHhCCC
Q 029077 164 FLYLARKLAGDP 175 (199)
Q Consensus 164 ~~~i~~~~~~~~ 175 (199)
+++|++.+...+
T Consensus 169 ~~~l~~~~~~~~ 180 (187)
T 1zj6_A 169 LEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHHHh
Confidence 999999886554
No 85
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=195.55 Aligned_cols=165 Identities=30% Similarity=0.551 Sum_probs=135.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
....+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35579999999999999999999888887777778888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++|.+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999887765 4789999999999975332 23445778888999999999999999999999
Q ss_pred HHHHHhCC
Q 029077 167 LARKLAGD 174 (199)
Q Consensus 167 i~~~~~~~ 174 (199)
|.+.+.+.
T Consensus 190 l~~~l~~~ 197 (199)
T 3l0i_B 190 MAAEIKKR 197 (199)
T ss_dssp HTTTTTTT
T ss_pred HHHHHHHh
Confidence 98877643
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.3e-29 Score=175.52 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=128.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||+++|..+.+. .+.+|.+........ ....+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 45799999999999999999998877764 456677655444333 3688999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.....+... .+...+++++++||++|.|++++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 9999999999998888887776543 6899999999999976533222221 22334568999999999999999
Q ss_pred HHHHHHHHhCC
Q 029077 164 FLYLARKLAGD 174 (199)
Q Consensus 164 ~~~i~~~~~~~ 174 (199)
|.+|.+.+.++
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999988764
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2e-30 Score=184.10 Aligned_cols=158 Identities=17% Similarity=0.234 Sum_probs=119.3
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.+||+++|++|||||||+++|..+.+ ..+.+|.+.+.. .+.+++ +.+.+||+||++.++..+..+++.+|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 345678999999999999999999876665 345667665433 333333 889999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-----------------cCCcE
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQY 149 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (199)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..+++.. .+..+
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 99999999999999999998888654 368999999999999864333333344331 34579
Q ss_pred EEeccCCCCChHHHHHHHHHHH
Q 029077 150 YEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
++|||++|.|++++|.+|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998643
No 88
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=5e-30 Score=180.96 Aligned_cols=157 Identities=18% Similarity=0.281 Sum_probs=123.1
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.+||+++|++|||||||+++|..+.+. .+.+|.+..... +.++ ++.+.+||++|++.++..+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3466789999999999999999998877664 456677665433 3333 3889999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH------------HcCCcEEEecc
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA 154 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~ 154 (199)
+++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..+... ..+++++++||
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 99999999999999999998888654 36899999999999987333333333332 13467999999
Q ss_pred CCCCChHHHHHHHHHH
Q 029077 155 KSNYNFEKPFLYLARK 170 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~ 170 (199)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998764
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=7.4e-31 Score=184.28 Aligned_cols=163 Identities=18% Similarity=0.327 Sum_probs=123.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEe---cCcEEEEEEEeCCCcccccccccccccCCc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (199)
.+||+++|++|||||||+++|... .+...+.+|.|.++....... ++..+.+.+||++|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999998764 455566778887766655443 235678999999999998888888899999
Q ss_pred EEEEEEeCCCh-hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-----HHHHHHHHcCCc----EEEeccCCC
Q 029077 88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKKNLQ----YYEISAKSN 157 (199)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-----~~~~~~~~~~~~----~~~~s~~~~ 157 (199)
++++|||++++ .++..+..|+..+....++.|+++|+||+|+.+..... ....+++..+++ ++++||++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 57999999999988776789999999999997643221 123455556776 999999999
Q ss_pred C-ChHHHHHHHHHHHhCCC
Q 029077 158 Y-NFEKPFLYLARKLAGDP 175 (199)
Q Consensus 158 ~-~v~~~~~~i~~~~~~~~ 175 (199)
. +++++++.|.+.+....
T Consensus 162 ~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 162 SDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred chhHHHHHHHHHHHHhccc
Confidence 7 99999999998887543
No 90
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.1e-29 Score=177.20 Aligned_cols=161 Identities=20% Similarity=0.335 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccCCc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ 87 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d 87 (199)
...+||+++|++|||||||+++|... .+...+ ++.|.+.....+.+++..+.+.+||++|.+. +......+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45799999999999999999998743 233333 3455566666677788888999999999776 4556677788899
Q ss_pred EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
++++|||++++.+|..+..|...+.... .+.|+++|+||.|+.+ +.... +...++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988777643 5799999999999965 33333 334567778889999999999999999
Q ss_pred HHHHHHHHh
Q 029077 164 FLYLARKLA 172 (199)
Q Consensus 164 ~~~i~~~~~ 172 (199)
|.++++.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=6.5e-30 Score=179.04 Aligned_cols=159 Identities=17% Similarity=0.300 Sum_probs=124.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
+...+||+++|++|||||||+++|..+. ...+.+|.|........ + .+.+.+||++|++.++..+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~-~~~~~~t~g~~~~~~~~--~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNIKSVQS--Q--GFKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSC-CEEEEEETTEEEEEEEE--T--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCC-CCcccCcCCeEEEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 4567999999999999999999977553 34566777755433332 2 57899999999999988888899999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~ 162 (199)
++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+..+. +...+++++++||++|.|+++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 9999999999999988888877543 368999999999999765432222221 112346799999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+|.+|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (181)
T 1fzq_A 168 GMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=8.7e-30 Score=180.01 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=120.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+++|++|||||||+++|..+.+. .+.+|.+...... ....+.+.+||+||++.+...+..+++++|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEE----EETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEE----EECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 467899999999999999999998776654 3455665433322 22558999999999999999888899999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+... .+...+++++++||++|.|+++
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 99999999999999988888876543 5899999999999976432222211 1122345799999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+|++|++.+.+
T Consensus 181 l~~~l~~~i~~ 191 (192)
T 2b6h_A 181 GLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 93
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.2e-30 Score=175.69 Aligned_cols=155 Identities=24% Similarity=0.326 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 93 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (199)
+||+++|++|||||||+++|..+.+.. +.+|.+..... +....+.+.+||+||++.++..+..+++++|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEE----EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEE----EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999988777653 45666633222 2335688999999999999888888999999999999
Q ss_pred eCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHHHHHH
Q 029077 94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 94 d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|++++.++..+..|+..+... .++.|+++|+||+|+.+.....+.... +...+++++++||++|.|++++|++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 999999999988888877653 368999999999999764322222111 1223457999999999999999999
Q ss_pred HHHHHhC
Q 029077 167 LARKLAG 173 (199)
Q Consensus 167 i~~~~~~ 173 (199)
|.+.+..
T Consensus 156 l~~~i~~ 162 (164)
T 1r8s_A 156 LSNQLRN 162 (164)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9988753
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.2e-30 Score=180.56 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=123.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||++++..+.+ ..+.++.+........ ....+.+||++|++.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5789999999999999999999876665 5566677644433332 3488999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|++++.++..+..|+..+... ..+.|+++|+||+|+.+.....+...... ..+++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 999999999999999988888765 36899999999999976433232222221 23357999999999999999
Q ss_pred HHHHHHHHhC
Q 029077 164 FLYLARKLAG 173 (199)
Q Consensus 164 ~~~i~~~~~~ 173 (199)
+++|.+.+.+
T Consensus 171 ~~~l~~~~~~ 180 (183)
T 1moz_A 171 LDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=8.3e-30 Score=180.64 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=120.3
Q ss_pred CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEec-CcEEEEEEEeCCCcccccccc---
Q 029077 6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTN-CGKIRFYCWDTAGQEKFGGLR--- 79 (199)
Q Consensus 6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~D~~g~~~~~~~~--- 79 (199)
.+....+.+||+++|.+|||||||++++. +.+... ++.+.+.. .....+. +..+.+.+||++|++.+....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 44566788999999999999999999755 444443 33333333 2333333 567899999999999987777
Q ss_pred cccccCCcEEEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--------ccH-HHHHHHH----H
Q 029077 80 DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHR----K 144 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------~~~-~~~~~~~----~ 144 (199)
..+++++|++|+|||++++ +++..+..|+..+....++.|+++|+||+|+.+.. +.. +...+++ .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 7889999999999999997 66777777888776667899999999999986521 111 2235566 5
Q ss_pred cCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 145 KNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 145 ~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
.++.++++||++ .|++++|..|++.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CCcceEEEEech-hhHHHHHHHHHHHh
Confidence 678899999999 99999999999875
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=2.5e-29 Score=177.07 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=126.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
.+.+||+++|++|||||||+++|..+.+. .+.+|.+........ ..+.+.+||+||++.+...+..+++++|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 57899999999999999999998766553 355666644333332 3688999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.....+... .+...+++++++||++|.|++++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG 174 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence 9999999999998888888776542 5899999999999976533222221 12233557999999999999999
Q ss_pred HHHHHHHHhCCC
Q 029077 164 FLYLARKLAGDP 175 (199)
Q Consensus 164 ~~~i~~~~~~~~ 175 (199)
+++|.+.+.+..
T Consensus 175 ~~~l~~~i~~~~ 186 (189)
T 2x77_A 175 MDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcc
Confidence 999999886543
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.6e-28 Score=187.09 Aligned_cols=163 Identities=25% Similarity=0.443 Sum_probs=139.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
...++|+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||++|++.+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999998888777778876444 445566778899999999999999999999999999999
Q ss_pred EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------cc-cHHHHHHHHHcCC-cEEEecc
Q 029077 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA 154 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~ 154 (199)
+|||++++.++..+. .|+..+....+++|+++|+||+|+.+. .. ..+...+++..++ +++++||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 999999999999887 788888887779999999999998542 22 2344577888887 8999999
Q ss_pred CCCCChHHHHHHHHHHHhCC
Q 029077 155 KSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~~ 174 (199)
++|.|++++|..|.+.+...
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=4.6e-28 Score=172.03 Aligned_cols=162 Identities=33% Similarity=0.578 Sum_probs=138.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..++|+++|++|||||||+++|....+...+.++.|.+.....+.+++..+.+.+||++|++.++.....+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 35899999999999999999999888877777888888777788888888999999999999988888888899999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|+|+++..++..+..|+..+.... .+.|+++++||.|+.+. .. ..+...++...++.++++|++++.|++++|+.|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888988776653 47899999999999753 22 2345678888899999999999999999999999
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1.3e-27 Score=168.67 Aligned_cols=160 Identities=33% Similarity=0.576 Sum_probs=139.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
..++|+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 46899999999999999999999888888888899988888888888888999999999999988888888899999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|+|+++..+++.+..|+..+.... .+.|+++++||.|+.+. .. ..+...++...++.++++|++++.+++++|+.|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999888988776643 47899999999999763 22 3345678888899999999999999999999998
Q ss_pred HHH
Q 029077 169 RKL 171 (199)
Q Consensus 169 ~~~ 171 (199)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.9e-31 Score=190.19 Aligned_cols=161 Identities=27% Similarity=0.480 Sum_probs=132.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35779999999999999999999887777766666665333 33445566778899999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEec
Q 029077 90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS 153 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s 153 (199)
++|||++++.++..+. .|+..+....++.|+++|+||+|+.+.. . ..+...+++..++ +++++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 9999999999999887 7888887776789999999999996532 1 1223456666776 899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 029077 154 AKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~ 171 (199)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=183.25 Aligned_cols=166 Identities=20% Similarity=0.262 Sum_probs=123.1
Q ss_pred CccCCCceEEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccce-eEEEeeEEE--------------EecC
Q 029077 7 QTVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNC 59 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 59 (199)
.+..+..+||+|+|.+ |||||||+++|.. +.+...+.++. +.++....+ ..++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3455778999999999 9999999999987 44555555543 333222111 1345
Q ss_pred cEEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEeC
Q 029077 60 GKIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDV 95 (199)
Q Consensus 60 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 95 (199)
..+.+.+|| ++|++++...+..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6667777777777776 79999999999
Q ss_pred CCh--hhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077 96 TAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK 170 (199)
Q Consensus 96 ~~~--~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~i~~~ 170 (199)
+++ .++..+..|+..+... ..+.|+++|+||+|+.+.....+...++.. .+++++++||++|.|++++|.+|++.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 998 8999999999988765 368999999999999764333455566665 47899999999999999999999987
Q ss_pred Hh
Q 029077 171 LA 172 (199)
Q Consensus 171 ~~ 172 (199)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.8e-28 Score=183.23 Aligned_cols=160 Identities=23% Similarity=0.317 Sum_probs=121.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (199)
..+.+||+|+|.+|||||||+++|..+.+... .+|.+...... ....+.+.+|||+|++.+...+..+++.+|++
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEE----EETTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEE----ecCcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 35678999999999999999999877665433 35555544433 33568999999999999999999999999999
Q ss_pred EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHH
Q 029077 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~ 162 (199)
|+|||+++..++..+..|+..+.... +++|+++|+||+|+.+.....+..... ...+++++++||++|.|+++
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999998888877765543 589999999999998754333322221 12345699999999999999
Q ss_pred HHHHHHHHHhCC
Q 029077 163 PFLYLARKLAGD 174 (199)
Q Consensus 163 ~~~~i~~~~~~~ 174 (199)
+|++|.+.+.+.
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=8.1e-28 Score=165.92 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=111.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI 84 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~ 84 (199)
|+.++|+++|++|||||||+++|....+.....++.+.+.....+..+ +..+.+|||+|+..+.. ....+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 456899999999999999999988765543333333222223333333 36899999999887643 2244443
Q ss_pred --CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 85 --HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 85 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
+++++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.+. ....+...+++..+++++++||++|.|++
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 7999999999988643 3456666655 37999999999998642 22223456777788999999999999999
Q ss_pred HHHHHHHHHH
Q 029077 162 KPFLYLARKL 171 (199)
Q Consensus 162 ~~~~~i~~~~ 171 (199)
++|.+|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2.8e-27 Score=169.67 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=112.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccc-cccccccCCcE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC 88 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~ 88 (199)
.+.+||+++|++|||||||+++|..+.+...+.++. ..... +.+++. .+.+.+||+||++.+.. .+..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 467999999999999999999999888776665433 33333 444444 68999999999998887 67888999999
Q ss_pred EEEEEeCCChh-hHhcHHH-HHHHHHhh---cCCCcEEEEEeCCCCCCccccHHHHH----HHH----------------
Q 029077 89 AIIMFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVT----FHR---------------- 143 (199)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~-~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~~~~----~~~---------------- 143 (199)
+++|+|+++.. ++..... |...+... ..+.|+++|+||+|+.+.....+... ...
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 3555444 44444332 24789999999999976432221110 000
Q ss_pred -----------------Hc--CCcEEEeccCCC------CChHHHHHHHHHHH
Q 029077 144 -----------------KK--NLQYYEISAKSN------YNFEKPFLYLARKL 171 (199)
Q Consensus 144 -----------------~~--~~~~~~~s~~~~------~~v~~~~~~i~~~~ 171 (199)
.. ++.|++|||++| .|++++|.+|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998753
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1e-26 Score=186.07 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=127.8
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
..++.+||+++|.+|||||||+++|..+.+. .+.+|.+.....+. ...+.+.+|||+|++.+...+..+++++|+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEE----SSSCEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEE----eCCEEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999877754 45567776655433 356889999999999999999999999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChH
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~ 161 (199)
+|+|||++++.++..+..|+..+.... .++|+++|+||+|+.+.....+.... ....+++++++||++|.|++
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 999999999999999998888876542 58999999999999764332222211 11233469999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 029077 162 KPFLYLARKLAGDP 175 (199)
Q Consensus 162 ~~~~~i~~~~~~~~ 175 (199)
++|++|.+.+....
T Consensus 473 ~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 473 EGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999886544
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=8.8e-27 Score=162.25 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=116.0
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (199)
...+.++|+++|++|||||||+++|..+.+...+.++.+.+.....+..++ ..+.+||+||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 446779999999999999999999988777665555544444444444443 467899999999999998889999999
Q ss_pred EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-------cC--CcEEEeccCCCCC
Q 029077 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN 159 (199)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 159 (199)
+++|+|+++....... .++..+. ..+.|+++|+||+|+.+... .+....... .+ ++++++||++|.|
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999999884221111 1222222 24899999999999976421 111222221 11 4799999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 029077 160 FEKPFLYLARKLAGDP 175 (199)
Q Consensus 160 v~~~~~~i~~~~~~~~ 175 (199)
++++|.+|++.+....
T Consensus 158 v~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999999876543
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=9.3e-27 Score=175.52 Aligned_cols=158 Identities=21% Similarity=0.308 Sum_probs=123.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-----ccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~ 82 (199)
+..+||+++|.+|||||||+++|+.+... ..+.+|.+........ . +.+.+.+||+||++.+ ......+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~--~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF--L-GNMTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE--T-TTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe--C-CceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 35689999999999999999998766322 2455666665554332 3 3689999999999887 6777888
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHH---HHhhcCCCcEEEEEeCCCCCC--cc-----c-cHHHHHHHHHcC---Cc
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRD---LCRVCENIPIVLCGNKVDVKN--RQ-----V-KAKQVTFHRKKN---LQ 148 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~---l~~~~~~~p~iiv~~K~D~~~--~~-----~-~~~~~~~~~~~~---~~ 148 (199)
++++|++|+|||+++..++..+..|... +....++.|+++|+||+|+.+ .. . ..+...+++..+ ++
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 8999999999999999999988776554 444467899999999999976 22 1 134457777776 78
Q ss_pred EEEeccCCCCChHHHHHHHHHHHh
Q 029077 149 YYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 149 ~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
++++||++ .++.++|..+++.+.
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEEeeecC-ChHHHHHHHHHHHHc
Confidence 99999999 889999988887654
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.1e-26 Score=168.30 Aligned_cols=164 Identities=12% Similarity=0.090 Sum_probs=112.8
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------ccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLR 79 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~ 79 (199)
.+...++|+|+|.+|||||||+++|+.+.+... +..+.+..............+.+|||||..... ...
T Consensus 25 ~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 102 (228)
T 2qu8_A 25 INPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI 102 (228)
T ss_dssp CCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence 346789999999999999999999886654311 122222222222222234789999999983210 112
Q ss_pred cccccCCcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH----HHHHHHHHcC--CcEE
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA----KQVTFHRKKN--LQYY 150 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~----~~~~~~~~~~--~~~~ 150 (199)
..++..+|++|+|+|++++.++.. ...|+..+....++.|+++|+||+|+.+. .... ....++...+ ++++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 334678899999999999887752 23466666555568999999999999753 3322 2235666666 7899
Q ss_pred EeccCCCCChHHHHHHHHHHHhCC
Q 029077 151 EISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
++||++|.|++++|.+|++.+...
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988643
No 109
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.9e-26 Score=172.85 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=130.7
Q ss_pred CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCccccc-------
Q 029077 5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG------- 76 (199)
Q Consensus 5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~------- 76 (199)
+..+.+++.-.|+++|.+|||||||+|+|++..+. ...+..+++........... ...+.+|||||.....
T Consensus 2 ~~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~ 80 (308)
T 3iev_A 2 HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGH 80 (308)
T ss_dssp -----CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHH
Confidence 34567788899999999999999999998866543 23334444444444444444 7889999999986544
Q ss_pred ---ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC-CccccHHH-HHHHHHcC--CcE
Q 029077 77 ---GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN--LQY 149 (199)
Q Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~-~~~~~~~~-~~~~~~~~--~~~ 149 (199)
.....++..+|++++|+|+++..++.....|+..+... +.|+++|+||+|+. +.....+. ..+....+ ..+
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 34456678999999999999988777777777777664 79999999999997 44443333 35566654 779
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 184 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~ 184 (199)
+++||++|.|++++++.|.+.+.+.+.....+..+
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t 193 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMIT 193 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCccccc
Confidence 99999999999999999999998877654444333
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.4e-26 Score=162.65 Aligned_cols=161 Identities=16% Similarity=0.196 Sum_probs=118.5
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGY 82 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~ 82 (199)
.+++.++|+++|++|||||||+++|....+.....++.+.+.....+..+ ...+.+||+||+..+.. ....+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence 35678999999999999999999988655433333433333333334333 47899999999887642 23444
Q ss_pred cc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 83 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
+. .++++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.+. ....+...+++..+++++++||++|.|
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence 43 5899999999875 4455667766655 48899999999998653 233345567777889999999999999
Q ss_pred hHHHHHHHHHHHhCCCC
Q 029077 160 FEKPFLYLARKLAGDPN 176 (199)
Q Consensus 160 v~~~~~~i~~~~~~~~~ 176 (199)
++++|.++++.+.+..+
T Consensus 156 v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 156 IEELKKAISIAVKDKKT 172 (188)
T ss_dssp HHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999876653
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.5e-27 Score=178.76 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---cccccccCCcE
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC 88 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 88 (199)
||+++|+.|||||||++++..+.... .+.+|.|.+.... +..+.+++|||+|+++|+. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999866443322 2456777665542 2458899999999999964 35788999999
Q ss_pred EEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--------ccHH-HHHHHHH----cCCcEEEec
Q 029077 89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEIS 153 (199)
Q Consensus 89 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------~~~~-~~~~~~~----~~~~~~~~s 153 (199)
+|+|||++++ ++......|+..+....++.|++++|||+|+.+.. +..+ ..++++. .++.|++||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999997 23333334455555556899999999999997532 2222 2244553 578899999
Q ss_pred cCCCCChHHHHHHHHHHHhC
Q 029077 154 AKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 154 ~~~~~~v~~~~~~i~~~~~~ 173 (199)
|++ .++.+.|..+++.+..
T Consensus 156 Akd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSST
T ss_pred cCC-CcHHHHHHHHHHHHHh
Confidence 998 5899999999987753
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=3.4e-26 Score=161.65 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=106.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------cccccccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 79 (199)
....++|+++|.+|||||||+++|+.+.+...+.++.+.+........++ .+.+||+|| ++.+....
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 45679999999999999999999887766666666766655544444433 589999999 55555556
Q ss_pred cccccCC---cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HH----HHHHcCCcEEE
Q 029077 80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYE 151 (199)
Q Consensus 80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~----~~~~~~~~~~~ 151 (199)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+....... .+ +....+.++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 6666666 9999999999876655432 2222222 48999999999999764433221 12 22234578999
Q ss_pred eccCCCCChHHHHHHHHHHHh
Q 029077 152 ISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+||++|.|++++|++|.+.+.
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHT
T ss_pred EEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.2e-26 Score=187.01 Aligned_cols=165 Identities=21% Similarity=0.297 Sum_probs=123.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEE--------EEecCcEEEEEEEeCCCccccccccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--------FFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
.....+||+++|.+|||||||+++|..+.+...+.+|.|.+..... ...++..+.+.+||++|++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4578899999999999999999999988887777888887666432 12233468999999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCC
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
.+++.+|++|+|+|+++. +....|...+....++.|+++|+||+|+.+. .... +....+...+.+++++||++|.
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 999999999999998754 6678899999888788999999999999763 3333 3446677778899999999999
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 029077 159 NFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~ 176 (199)
|+++++..|.+.+.+.+.
T Consensus 194 gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -CTTHHHHHHHHHTCTTS
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999999987654
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=4.3e-26 Score=167.81 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=116.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc------cccc-
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY- 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~- 83 (199)
++.++|+++|.+|||||||+|+|.+..+.....+ |++.......+......+.+||+||...+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999886554322222 334333444444445789999999988776532 4444
Q ss_pred -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
..+|++++|+|+++.++. ..|...+... +.|+++|+||+|+.+ +....+...+++..+++++++||++|.|++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 589999999999986543 3455555543 899999999999865 233334567788889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
++|.++.+.+..
T Consensus 156 el~~~i~~~~~~ 167 (258)
T 3a1s_A 156 ELKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc
Confidence 999999998753
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=5.6e-26 Score=155.66 Aligned_cols=148 Identities=22% Similarity=0.176 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEE--EeeEEEEecCcEEEEEEEeCCCcccc-------ccccccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI 84 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 84 (199)
.||+++|++|||||||+++|..+.+.. ..+..+.+ ........+ +..+.+||+||...+ ......+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999988765421 11222222 222333333 347899999998763 333455678
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHH-HHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHH
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK 162 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~ 162 (199)
.+|++++|+|++++.+.. ..++ ..+.. .+.|+++|+||+|+.+.. .+..+++ ..++ +++++||++|.|+++
T Consensus 79 ~~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEE 151 (161)
T ss_dssp TCSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHH
T ss_pred hCCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHH
Confidence 999999999999863322 2222 22222 389999999999997652 2222333 4566 799999999999999
Q ss_pred HHHHHHHHH
Q 029077 163 PFLYLARKL 171 (199)
Q Consensus 163 ~~~~i~~~~ 171 (199)
+|++|.+.+
T Consensus 152 l~~~l~~~l 160 (161)
T 2dyk_A 152 LLEAIWERL 160 (161)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998865
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=3.4e-25 Score=156.30 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=110.7
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------ccccc
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFG 76 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~ 76 (199)
+.+....+||+++|++|||||||+++|+.+. .....++.+.+........+ ..+.+||+|| .+.+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHH
Confidence 3445678899999999999999999988765 34445555555444333332 2477999999 44555
Q ss_pred ccccccccCC---cEEEEEEeCCChhhH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHHH-cC
Q 029077 77 GLRDGYYIHG---QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KN 146 (199)
Q Consensus 77 ~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~~-~~ 146 (199)
.....+++.+ +++++|+|+++..+. ..+..|+... +.|+++|+||+|+.+..... +...++.. ..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 5555565554 999999998875332 2333343332 79999999999997543222 22344444 34
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 147 LQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
++++++||++|.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999998754
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=2e-26 Score=162.01 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC-----------ccccccccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY 82 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~ 82 (199)
+||+++|++|||||||+++|..+.+...+.++. +......... .+.+||+|| ++.+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999998877665554433 2222223222 688999999 45555566666
Q ss_pred ccC-CcEEEEEEeCCChhhHhcH-HHHHHH--------HHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc--
Q 029077 83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-- 148 (199)
Q Consensus 83 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-- 148 (199)
++. ++++++|+++.+..++..+ ..|... +... ..+.|+++|+||+|+.+.. ..+...+++..+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence 666 7777777777777777665 455542 2221 2589999999999998654 33344666777654
Q ss_pred -----EEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077 149 -----YYEISAKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 149 -----~~~~s~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
++++||++|.|++++|.+|.+.+.+..+
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876543
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=3.6e-26 Score=158.70 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY 82 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (199)
+.++|+++|++|||||||+++|...... ....+....+.....+.+++ ..+.+||++|...+.... ..+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999998765432 11112222222333344443 458899999986543211 135
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
++.+|++++|+|++++.++. ...|+..+.... .++|+++|+||+|+.+.... ++...+.+++++||++|.|++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHH
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhhccCCceEEEeCCCCCCHH
Confidence 78999999999999988876 456777666554 47999999999998543211 122246789999999999999
Q ss_pred HHHHHHHHHHhC
Q 029077 162 KPFLYLARKLAG 173 (199)
Q Consensus 162 ~~~~~i~~~~~~ 173 (199)
++|.+|.+.+..
T Consensus 155 ~l~~~l~~~~~~ 166 (172)
T 2gj8_A 155 VLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhhh
Confidence 999999987753
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=1.3e-25 Score=166.23 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=115.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccccc--
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-- 84 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~-- 84 (199)
.++|+++|++|||||||+|+|.+...... ...|+++......+.. ...+.+||+||...+.. ....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 57999999999999999999886543222 2235555555555555 67899999999887653 3344554
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
.+|++++|+|+++.+++ ..|...+.. .+.|+++|+||+|+.+. ....+...+++.++++++++||++|.|++++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 154 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV 154 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence 69999999999886543 345555554 38999999999998642 3333445677788999999999999999999
Q ss_pred HHHHHHHHhC
Q 029077 164 FLYLARKLAG 173 (199)
Q Consensus 164 ~~~i~~~~~~ 173 (199)
|.++.+.+..
T Consensus 155 ~~~i~~~~~~ 164 (272)
T 3b1v_A 155 VKKAAHTTTS 164 (272)
T ss_dssp HHHHHHSCTT
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=6.3e-26 Score=168.39 Aligned_cols=157 Identities=14% Similarity=0.142 Sum_probs=112.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----------cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RD 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~ 80 (199)
|++++|+++|.+|||||||+|+|.+..+.....+ |++.......+......+.+||+||...+... ..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~--g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECT--TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCC--CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence 4679999999999999999999886654322223 33333333333333457889999998776532 12
Q ss_pred cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCC
Q 029077 81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
.+ ...+|++++|+|+++.+....+ ...+... +.|+++|+||+|+.+. ........+++..+++++++||++|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYL---TLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 22 2689999999999986654433 3334333 8999999999998653 2223345677778899999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 029077 158 YNFEKPFLYLARKLAGD 174 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~ 174 (199)
.|+++++.+|.+.+...
T Consensus 154 ~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 154 RGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999998877654
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.2e-25 Score=163.75 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=109.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----------cccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY 83 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 83 (199)
.+|+++|.+|||||||+|+|.+........+....+.....+..+ +..+.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 389999999999999999988665433333333333444444433 34889999999877654 234455
Q ss_pred --cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.++|++|+|+|+++.+.+..+..+ +... +.|+++|+||+|+.+.. .......+++..+++++++||++|.|+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 154 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI 154 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 889999999999987655443333 3332 79999999999986532 223344577778999999999999999
Q ss_pred HHHHHHHHHH
Q 029077 161 EKPFLYLARK 170 (199)
Q Consensus 161 ~~~~~~i~~~ 170 (199)
++++.+|.+.
T Consensus 155 ~el~~~i~~~ 164 (256)
T 3iby_A 155 PALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999999887
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=4.2e-25 Score=159.27 Aligned_cols=163 Identities=17% Similarity=0.054 Sum_probs=110.5
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcc----------cccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGG 77 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~~ 77 (199)
+....++|+|+|..|||||||+++|+..........+.|++......... .....+.+|||||.. .+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 34567899999999999999999988765333334444444443334443 445788999999943 2233
Q ss_pred cccccccC---CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHH-HHH------
Q 029077 78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVT-FHR------ 143 (199)
Q Consensus 78 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~-~~~------ 143 (199)
....++.. +|++++|+|+++..+. ....++..+.. .+.|+++|+||+|+.+..... +... +..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 44444444 7889999999875332 12334444444 378999999999997643321 1112 222
Q ss_pred HcCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077 144 KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 144 ~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
....+++++||++|.|+++++.+|.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 1567899999999999999999999988644
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=1.6e-24 Score=160.72 Aligned_cols=160 Identities=17% Similarity=0.125 Sum_probs=116.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------cccccc-
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY- 83 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~- 83 (199)
|+.++|+++|++|||||||+++|.+..+.....++.+.+......... +..+.+||+||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 457899999999999999999988665533333444444444444333 35689999999887665 334444
Q ss_pred -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
.++|++++|+|+++.+. ...|...+... ...|+++|+||+|+.+. ........+.+..+++++++|+++|.|+.
T Consensus 79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence 68999999999988642 23344444443 23999999999998642 22223556777889999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 029077 162 KPFLYLARKLAGDPN 176 (199)
Q Consensus 162 ~~~~~i~~~~~~~~~ 176 (199)
+++..+.+.+.....
T Consensus 155 ~l~~~i~~~~~~~~~ 169 (271)
T 3k53_A 155 ELKRMIALMAEGKVT 169 (271)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcccc
Confidence 999999998875543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=3.6e-24 Score=160.69 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------cccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGY 82 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~ 82 (199)
.+..+|+++|.+|||||||+|+|+...+.. ..+..+++..............+.+|||||... +......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 456789999999999999999988765531 112222232222222333567899999999876 33344567
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHH-HHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-cC-CcEEEeccCCCCC
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KN-LQYYEISAKSNYN 159 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-~~-~~~~~~s~~~~~~ 159 (199)
++.+|++++|+|++++.+.. ..|+ ..+....++.|+++|+||+|+.+.... ....... .+ .+++++||++|.|
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ 159 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence 88999999999998764332 3444 445444457999999999999754320 1122222 22 4689999999999
Q ss_pred hHHHHHHHHHHHhCCCCC
Q 029077 160 FEKPFLYLARKLAGDPNL 177 (199)
Q Consensus 160 v~~~~~~i~~~~~~~~~~ 177 (199)
++++++.|.+.+.+.+..
T Consensus 160 v~~l~~~l~~~l~~~~~~ 177 (301)
T 1wf3_A 160 VAELKADLLALMPEGPFF 177 (301)
T ss_dssp HHHHHHHHHTTCCBCCCS
T ss_pred HHHHHHHHHHhcccCCCC
Confidence 999999999988766654
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=1.2e-23 Score=166.45 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------cccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY 83 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~ 83 (199)
..++|+++|.+|||||||+|+|+.... ....+..|++.......+....+.+.+|||||...+.... ..++
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 357899999999999999999775432 1222233444333322222345789999999987755433 3367
Q ss_pred cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077 84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~ 163 (199)
..+|++++|+|++++.++..+..+...+.. ..+.|+++|+||+|+.+...... ..+......+++++||++|.|++++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999999998887654444433332 34899999999999976443221 2233332368999999999999999
Q ss_pred HHHHHHHHh
Q 029077 164 FLYLARKLA 172 (199)
Q Consensus 164 ~~~i~~~~~ 172 (199)
+++|.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999887
No 126
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=3.6e-24 Score=166.80 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=112.4
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEecCcEEEEEEEeCCCcccccccc------
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR------ 79 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~------ 79 (199)
.+....++|+|+|..|+|||||+++|+...+. ......|++.. .......+. ..+.+|||||+..+....
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~ 106 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEK 106 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHH
Confidence 34567899999999999999999997765542 11223333322 223333332 388999999998776542
Q ss_pred -cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077 80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY 158 (199)
Q Consensus 80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 158 (199)
..++..+|++|+|+|+.... ....|+..+... +.|+++|+||+|+.+.........++...+++++++||++|.
T Consensus 107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 34678999999999984332 234566666665 899999999999987665555556666778899999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 029077 159 NFEKPFLYLARKLAGD 174 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~ 174 (199)
|++++|++|.+.+.+.
T Consensus 182 gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 182 GFDDIGKTISEILPGD 197 (423)
T ss_dssp STTTHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999999999655
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=3.6e-23 Score=159.06 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=116.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---------cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LR 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~ 79 (199)
...++|+++|++|||||||+++|........ ...|.+.... ........+.+|||+|...... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG----QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE----EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE----EEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence 5678999999999999999999776543211 1112222211 1122346789999999754321 11
Q ss_pred cccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCC
Q 029077 80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
..+...+|++++|+|+++.. ++.....|+..+.....+.|+++|+||.|+.+.....+...++...+.+++++||++|
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 23445799999999998876 5677778888887765689999999999998754334455666677889999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 029077 158 YNFEKPFLYLARKLAG 173 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~ 173 (199)
.|+++++.+|.+.+..
T Consensus 321 ~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRP 336 (357)
T ss_dssp BTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999988753
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.7e-24 Score=155.58 Aligned_cols=142 Identities=17% Similarity=0.175 Sum_probs=101.7
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (199)
.....++|+++|++|||||||+++|..+.+... +.++.+. ......+.+||+||++.++..+..+++.
T Consensus 8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHh
Confidence 356789999999999999999999887765432 2233221 1145678999999999988888888776
Q ss_pred ----CcEEEEEEeCC-ChhhHhcHHHHHHHHHhh-----cCCCcEEEEEeCCCCCCcccc--------HHHHHHHHHcCC
Q 029077 86 ----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNL 147 (199)
Q Consensus 86 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~-----~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~~~~ 147 (199)
++++|+|+|++ +..++.....|+..+... ..++|+++|+||+|+.+.... .+...++...+.
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888888888888777653 258999999999999764432 223355566677
Q ss_pred cEEEeccCCCCC
Q 029077 148 QYYEISAKSNYN 159 (199)
Q Consensus 148 ~~~~~s~~~~~~ 159 (199)
.++++|+++|.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 899999998865
No 129
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=3.2e-22 Score=156.03 Aligned_cols=165 Identities=17% Similarity=0.103 Sum_probs=114.8
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE-------EE---------Ee---cCcEEEEEEE
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-------DF---------FT---NCGKIRFYCW 67 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~l~ 67 (199)
++...+.++|+++|..++|||||+++|......... .....+.... .. .. ......+.+|
T Consensus 2 ~~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred CCccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEE
Confidence 345677899999999999999999997753322110 0000000000 00 00 1123789999
Q ss_pred eCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----HHHHH
Q 029077 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHR 143 (199)
Q Consensus 68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----~~~~~ 143 (199)
||||++.+.......+..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+. .++..
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999876566666666555443 34689999999999764322221 22222
Q ss_pred H---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 144 K---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 144 ~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
. .+++++++||++|.|+++++++|.+.+..
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2 25689999999999999999999987753
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=7.7e-23 Score=155.56 Aligned_cols=157 Identities=19% Similarity=0.251 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-ccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccc---cC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKY-EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYY---IH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~ 85 (199)
+|+|+|.+|||||||+++|...... ..+ ..|...... .+.+++ ...+.+||+||... +..+...++ ..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 6899999999999999997754321 111 122221111 122222 25789999999532 333444444 45
Q ss_pred CcEEEEEEeCCC---hhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCC
Q 029077 86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 157 (199)
Q Consensus 86 ~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 157 (199)
++++|+|+|+++ +.++..+..|...+..+. .++|+++|+||+|+.+.. .....+.+... .+++++||+++
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence 999999999998 778888888998888764 479999999999997643 22234555555 68999999999
Q ss_pred CChHHHHHHHHHHHhCCCC
Q 029077 158 YNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~~~ 176 (199)
.|+++++.+|.+.+.+.+.
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999987765
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=4.5e-23 Score=162.36 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=107.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------ccccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR 79 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~ 79 (199)
+...+||+++|.+|||||||+|+|+..... ...+..|++.......+...+..+.+|||||+.. +....
T Consensus 172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 346799999999999999999998865432 1122333333333222222334689999999733 22222
Q ss_pred c-ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHH-HH----HHHcCCcEEE
Q 029077 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TF----HRKKNLQYYE 151 (199)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~-~~----~~~~~~~~~~ 151 (199)
. .+++.+|++++|+|++++.+++.. .|...+.. .++|+++|+||+|+.+.... .+.. .+ ....++++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 2 367889999999999998777664 46555544 48999999999999764321 1111 22 2234678999
Q ss_pred eccCCCCChHHHHHHHHHHHhC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+||++|.|++++|..+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 132
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=5e-22 Score=149.24 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc---------cccccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG 81 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~ 81 (199)
.+..+|+++|++|||||||+|+|++.... ...+..+++.......+......+.+|||||.. .+......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34568999999999999999998865432 111122222222222233345789999999986 23444566
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCC-cEEEeccCCCC
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNY 158 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~-~~~~~s~~~~~ 158 (199)
++..+|++++|+|+++ +.....|+..... ..+.|+++++||+|+.. .....+ ...+....++ .++++||++|.
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 7889999999999976 3333334332222 24799999999999986 222222 2345555665 69999999999
Q ss_pred ChHHHHHHHHHHHhCCCCC
Q 029077 159 NFEKPFLYLARKLAGDPNL 177 (199)
Q Consensus 159 ~v~~~~~~i~~~~~~~~~~ 177 (199)
|++++++.+.+.+.+.+..
T Consensus 161 ~v~~l~~~i~~~l~~~~~~ 179 (301)
T 1ega_A 161 NVDTIAAIVRKHLPEATHH 179 (301)
T ss_dssp THHHHHHHHHTTCCBCCCS
T ss_pred CHHHHHHHHHHhCCcCCCC
Confidence 9999999999988766654
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1.8e-22 Score=158.99 Aligned_cols=152 Identities=17% Similarity=0.207 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc---------cccccccccC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~~ 85 (199)
+|+++|.+|||||||+|+|..... .....+.|++...........+..+.+|||+|.+.. ......+++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 799999999999999999886553 223445565544443333323456899999997642 2334556899
Q ss_pred CcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HHHHHHcCC-cEEEeccCCCCChH
Q 029077 86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFE 161 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~v~ 161 (199)
+|++++|+|++++.+... +..|+. . .++|+++|+||+|+.+.. ..+. .+++ ..++ .++++||++|.|+.
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~---~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~ 154 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLR---K--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLD 154 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHH---H--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHH
Confidence 999999999987644322 223332 2 279999999999986431 1222 3343 4565 68999999999999
Q ss_pred HHHHHHHHHHhCC
Q 029077 162 KPFLYLARKLAGD 174 (199)
Q Consensus 162 ~~~~~i~~~~~~~ 174 (199)
++++++.+.+.+.
T Consensus 155 ~L~~~i~~~l~~~ 167 (439)
T 1mky_A 155 TMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccc
Confidence 9999999988643
No 134
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=3.5e-22 Score=161.53 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCC--CC-----Cc------cccceeEEEeeEEEEe-----cCcEEEEEEEeCCCcc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KK------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE 73 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~--~~-----~~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (199)
+..+|+++|+.++|||||+++|+... .. .. ...+.|.+.......+ ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999987521 11 00 1123444443332222 4557899999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEE
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (199)
.|...+..++..+|++|+|+|++++.+.+....|..... .++|+++|+||+|+.+........++....++ .++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 998888888999999999999999877777777765543 37899999999999875433333455555565 489
Q ss_pred EeccCCCCChHHHHHHHHHHHhCC
Q 029077 151 EISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
++||++|.|+++++++|.+.+...
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSCCC
T ss_pred EeecccCCCchhHHHHHhhcCCCc
Confidence 999999999999999999987643
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=2.6e-22 Score=148.00 Aligned_cols=171 Identities=10% Similarity=0.048 Sum_probs=105.1
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-------
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------- 79 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------- 79 (199)
.+....++|+|+|.+|||||||+++|+... +.....++ +++..............+.+|||||...+....
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345678999999999999999999988655 33322222 012211211222234679999999976653322
Q ss_pred ----cccccCCcEEEEEEeCCChhhH-hcHHHHHHHHHhhcCCCcEEEEEe-CCCCCCccccH--------HHHHHHHHc
Q 029077 80 ----DGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKK 145 (199)
Q Consensus 80 ----~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~p~iiv~~-K~D~~~~~~~~--------~~~~~~~~~ 145 (199)
..+++.+|++++|+|+++.... ..+..++..+.......|.++++| |+|+....... +...+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh
Confidence 2256889999999999862211 122233333322212456666666 99997543221 122244444
Q ss_pred CCcE-----EEeccCCCCChHHHHHHHHHHHhCCCCCce
Q 029077 146 NLQY-----YEISAKSNYNFEKPFLYLARKLAGDPNLHF 179 (199)
Q Consensus 146 ~~~~-----~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~ 179 (199)
+..+ +++||++|.|++++|..|.+.+..++...+
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~ 214 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY 214 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence 4322 789999999999999999999987774444
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=4e-23 Score=162.66 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc--------ccccccccccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI 84 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~ 84 (199)
..+|+++|.+|||||||+|+|..... ....++.|++...........+..+.+|||+|.. .+......+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 47999999999999999999776544 3455677877776666666666789999999985 34555566788
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHH
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP 163 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~ 163 (199)
.+|++++|+|++++.+... .++..+.. ..++|+++|+||+|+.+.... ..++. ..++ .++++||.+|.|+.++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~~~~--~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEMRAN--IYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC-----C--CCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccchhh--HHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 9999999999988755432 23333222 247899999999998753211 11222 2344 6899999999999999
Q ss_pred HHHHHHHHhCC
Q 029077 164 FLYLARKLAGD 174 (199)
Q Consensus 164 ~~~i~~~~~~~ 174 (199)
++++.+.+.+.
T Consensus 156 ~~~i~~~l~~~ 166 (436)
T 2hjg_A 156 LDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHTGGGC
T ss_pred HHHHHHhcCcc
Confidence 99999988653
No 137
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=7.5e-22 Score=144.40 Aligned_cols=173 Identities=10% Similarity=-0.003 Sum_probs=106.9
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc--------cccccc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLR 79 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~ 79 (199)
......+||+++|.+|||||||+|++++........+..+++..............+.+|||||.. .+....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 344678999999999999999999988766543333333344333333333346789999999963 222222
Q ss_pred ccc----ccCCcEEEEEEeCCChhhH-hcHHHHHHHHHh-hcCCCcEEEEEeCCCCCCcccc--------HHHHHHHHHc
Q 029077 80 DGY----YIHGQCAIIMFDVTARLTY-KNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKK 145 (199)
Q Consensus 80 ~~~----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~-~~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~~ 145 (199)
..+ ...+|++|+|+|+++.... ..+..++..+.. ...+.|+++++||.|+.+.... .....+....
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 3899999999999752211 112223333221 1236899999999999763321 2234666777
Q ss_pred CCcEEEeccCC-----CCChHHHHHHHHHHHhCCCCCcee
Q 029077 146 NLQYYEISAKS-----NYNFEKPFLYLARKLAGDPNLHFV 180 (199)
Q Consensus 146 ~~~~~~~s~~~-----~~~v~~~~~~i~~~~~~~~~~~~~ 180 (199)
+..++.++... +.|+.+++..|.+.+.++....+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~ 215 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 87777776654 579999999999998865444443
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=2.5e-22 Score=158.99 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=107.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------cccccccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR 79 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 79 (199)
....++|+++|.+|+|||||+++|+.... ....+..|++.......+......+.+||||| ++.+....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45679999999999999999999875432 12223334444332222222334889999999 45554443
Q ss_pred c-ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-c-HHHHHHHHHc-----CCcEEE
Q 029077 80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKK-----NLQYYE 151 (199)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~-~~~~~~~~~~-----~~~~~~ 151 (199)
. .+++.+|++++|+|+++....+ ...|...+.. .++|+++|+||+|+.+... . .+..+.++.. .+++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 3 3678899999999998754322 2334444444 4799999999999976332 2 2223333332 578999
Q ss_pred eccCCCCChHHHHHHHHHHHhCC
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+||++|.|++++|..+.+.+...
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999887543
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=7.2e-22 Score=143.91 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=105.2
Q ss_pred CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-----------c
Q 029077 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (199)
Q Consensus 7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~ 75 (199)
+......+||+|+|.+|||||||+|+|++........++.+++..............+.+|||||... +
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 44556789999999999999999999887666544434333333333333333446889999999432 2
Q ss_pred cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCcccc--------HHHHHHHHH
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRK 144 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~ 144 (199)
......++..+|++|+|+|+++.... ...|+..+... ....|+++|+||+|+.+.... .....+.+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 23333445678999999998753321 12233333221 124699999999998643221 234567777
Q ss_pred cCCcEEEeccCCC-----CChHHHHHHHHHHHhCCCCCcee
Q 029077 145 KNLQYYEISAKSN-----YNFEKPFLYLARKLAGDPNLHFV 180 (199)
Q Consensus 145 ~~~~~~~~s~~~~-----~~v~~~~~~i~~~~~~~~~~~~~ 180 (199)
.+..++.++...+ .++.+++..+.+.+.++....+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~ 221 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYT 221 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC-
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 8888888877644 68999999999888765444333
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.1e-22 Score=161.00 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=104.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEE--EeeEEEEecCcEEEEEEEeCCCcc-ccccc--------ccc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDG 81 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~-~~~~~--------~~~ 81 (199)
.++|+++|.+|||||||+|+|...... ......+++ .....+.++ ...+.+|||+|.. .+... ...
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 389999999999999999998865421 111122222 222233333 4678999999987 54322 234
Q ss_pred cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
++..+|++|+|+|++++.+++... +... ..++|+++|+||+|+.+.....+...++ ..+.+++++||++|.|++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~ 393 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILER----IKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE 393 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHH----HTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHH----hcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence 678999999999999876665432 2222 2488999999999997542212222222 244689999999999999
Q ss_pred HHHHHHHHHHh
Q 029077 162 KPFLYLARKLA 172 (199)
Q Consensus 162 ~~~~~i~~~~~ 172 (199)
+++.+|.+.+.
T Consensus 394 eL~~~l~~~~~ 404 (482)
T 1xzp_A 394 KLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHHh
Confidence 99999999765
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.3e-21 Score=158.08 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=114.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC--CCCC-----cc------ccceeEEEeeE--EEEe---cCcEEEEEEEeCCCcc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----KY------EPTIGVEVHPL--DFFT---NCGKIRFYCWDTAGQE 73 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~--~~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~D~~g~~ 73 (199)
+..+|+++|+.++|||||+++|+.. .... .. ....|.+.... ...+ ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4579999999999999999998742 1110 01 11233333221 1211 4456899999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEE
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY 150 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~ 150 (199)
.|......++..+|++|+|+|++++.+.+....|..... .+.|+++|+||+|+.+........++....++ .++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 998888888999999999999999877777777765443 38999999999999875433333455555565 489
Q ss_pred EeccCCCCChHHHHHHHHHHHhCC
Q 029077 151 EISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 151 ~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
++||++|.|+++++++|.+.+...
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred EEEeecCCCchHHHHHHHHhcccc
Confidence 999999999999999999988643
No 142
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.86 E-value=3.2e-21 Score=147.14 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=92.8
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
..+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.+...|+..+... ..+.|+++++||.
T Consensus 191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence 46889999999999999999999999999999999998 45677777777777653 3689999999999
Q ss_pred CCCCcc-----------------ccHHHHHHHH-----------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 128 D~~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|+.+.. ...+...++. ..++.+++|||++|.|++++|.++.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 985321 1233445554 356779999999999999999999998864
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=2.6e-21 Score=153.67 Aligned_cols=157 Identities=20% Similarity=0.166 Sum_probs=108.1
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCC----CCC-ccccceeEEEe--eEEEEecCcEEEEEEEeCCCccccccccc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FEK-KYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (199)
...++.++|+++|..++|||||+++|.... ... ......|.+.. .....+ ....+.+||+||++.+...+.
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence 445778999999999999999999987554 110 11112222221 112222 347899999999999888888
Q ss_pred ccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHc----CCcE
Q 029077 81 GYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQY 149 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~----~~~~ 149 (199)
..+..+|++++|+|+++. .+.+.+ ..+.. .++|.++|+||+|+.+... ..+..+++... +.++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 889999999999999874 333222 22222 3788899999999976322 12223444444 5789
Q ss_pred EEeccCCCCChHHHHHHHHHHHh
Q 029077 150 YEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+++||++|.|+++++++|.+.+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999999875
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=8.5e-22 Score=156.84 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecCcE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCGK 61 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (199)
.+.+||+++|.+++|||||+++|+... +.. ......|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 567999999999999999999987431 110 011122444444444555667
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhc-----HHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--c
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V 134 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~ 134 (199)
..+.+|||||++.|......++..+|++|+|+|++++.++.. ...+...+.......|+++|+||+|+.+.. .
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 889999999999999999999999999999999998754322 122222233333346799999999997621 1
Q ss_pred cH----HHHHHHHHc-----CCcEEEeccCCCCChHH
Q 029077 135 KA----KQVTFHRKK-----NLQYYEISAKSNYNFEK 162 (199)
Q Consensus 135 ~~----~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 162 (199)
.. +...+.... +++++++||++|.|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11 122333333 35799999999999975
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=2.1e-20 Score=145.98 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=101.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--ceeEEEeeEEEEe-------------c--C----cEEEEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY 65 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~ 65 (199)
..+.++|+++|+.++|||||+++|.... +..+..+ |....+....... . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3467999999999999999999976322 2222222 3333333222211 1 1 137899
Q ss_pred EEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHH
Q 029077 66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAK 137 (199)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~ 137 (199)
+||+||++.|...+...+..+|++|+|+|++++ .+.+.+.. + ......|+++++||+|+.+... ..+
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----L-EILGIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----H-HHTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----H-HHcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 999999999887777778899999999999964 33332222 2 2223458999999999976432 122
Q ss_pred HHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 138 ~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
..++++. .+++++++||++|.|+++++++|.+.+..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 3344443 35789999999999999999999987653
No 146
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.86 E-value=7.1e-21 Score=149.71 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=105.6
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEec
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTN 58 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~ 58 (199)
......++|+++|..++|||||+++|+... ... ......|.+.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 445778999999999999999999985321 110 011123444444444455
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---Hh---cHHHHHHHHHhhcCCCc-EEEEEeCCCCCC
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN 131 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~ 131 (199)
.....+.+|||||++.|...+...+..+|++++|+|++++.. |. ........+.. .++| +++++||+|+..
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 566799999999999998888888999999999999998642 21 11111111211 2566 899999999854
Q ss_pred cc--------ccHHHHHHHHHcC------CcEEEeccCCCCChHHHHH
Q 029077 132 RQ--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 132 ~~--------~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~ 165 (199)
.. ...+...+++..+ ++++++||++|.|+.++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 21 1112234444444 4699999999999998654
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=5.7e-23 Score=163.97 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (199)
+..+|+++|++++|||||+++|....+.....++.+.+......... ....+.+|||||++.|...+..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999987654433322222222222222221 23478999999999999999999999999999
Q ss_pred EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHH---HHHc--CCcEEEeccCCCCChHHH
Q 029077 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTF---HRKK--NLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~~ 163 (199)
|+|++++...+....| ..+.. .++|+++++||+|+.+... ..+.... +..+ .++++++||++|.|++++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 9999986554433332 22222 3789999999999975322 1111111 1111 247999999999999999
Q ss_pred HHHHHHHHh
Q 029077 164 FLYLARKLA 172 (199)
Q Consensus 164 ~~~i~~~~~ 172 (199)
+++|...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998764
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-21 Score=137.97 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=88.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC-
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH- 85 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 85 (199)
....++|+++|++|||||||+++|....+... ..++.+ .+.....+.+||+||...+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 35678999999999999999999887765431 111211 11145678999999999888777777665
Q ss_pred ---CcEEEEEEeCC-ChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCcccc
Q 029077 86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 86 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~ 135 (199)
+|++++|+|++ +..++..+..|+..+.... .+.|+++|+||+|+.+....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 8889988888887765532 48999999999999765443
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=2.8e-21 Score=154.67 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=85.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCcc---ccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-----------------FEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTA 70 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (199)
.+..+|+|+|.+|+|||||+++|+... ..... ....|.+.......+....+.+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 356799999999999999999986110 00000 0013333333344444457889999999
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
|+..+......+++.+|++|+|+|++++...+....|.. +.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT--TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEeCCCCccc
Confidence 999999988889999999999999998766665554432 222 37899999999999653
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=3.3e-22 Score=157.63 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY 82 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 82 (199)
..++|+++|++|||||||+|+|+..... ....+....+........+ ...+.+|||+|...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3578999999999999999998764321 1111222122222233333 4678999999976544332 335
Q ss_pred ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
+..+|++++|+|++++.+... ..|+..+ .+.|+++|+||+|+...........+. ...+++++||++|.|+++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e 373 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS 373 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence 788999999999998655433 3333333 357999999999997643322111111 356899999999999999
Q ss_pred HHHHHHHHHhCCC
Q 029077 163 PFLYLARKLAGDP 175 (199)
Q Consensus 163 ~~~~i~~~~~~~~ 175 (199)
++++|.+.+....
T Consensus 374 L~~~i~~~~~~~~ 386 (462)
T 3geh_A 374 LETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccC
Confidence 9999999886543
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=6.6e-22 Score=156.53 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=101.7
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC--------cccccccc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLR 79 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~ 79 (199)
...|...+|+++|.+|||||||+|+|...... ....+.|++..............+.+|||+| ++.+....
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 34467789999999999999999998765442 4455778887777777777777899999999 55556666
Q ss_pred cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 159 (199)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 159 (199)
..+++.+|++|+|+|..++.. ....|+..+... .++|+++|+||+|+.+.... ..++....-...+++||.+|.|
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~~--~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRAN--IYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTT
T ss_pred HhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhhh--HHHHHHcCCCceEEeecccccc
Confidence 777889999999999876432 223333333222 48999999999998653211 1111111112568999999999
Q ss_pred hHHHHHHHHHHHhC
Q 029077 160 FEKPFLYLARKLAG 173 (199)
Q Consensus 160 v~~~~~~i~~~~~~ 173 (199)
+.++++.+.+.+..
T Consensus 172 v~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 172 LGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred hHHHHHHHHhhccc
Confidence 99999999887754
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=6.6e-21 Score=143.52 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=90.0
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
+.+.+.+||++|++.++..+..++++++++|+|+|++ +..++.+...|+..+... ..+.|+++++||.
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4689999999999999999999999999999999765 445566666666666543 2689999999999
Q ss_pred CCCCcc------------------ccHHHHHH----------HHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 128 DVKNRQ------------------VKAKQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 128 D~~~~~------------------~~~~~~~~----------~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
|+.+.. ...+...+ +...++.+++|||+++.|++++|..+.+.+..+.
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 985422 12233334 2345567899999999999999999999887543
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=6.7e-21 Score=150.11 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCcccccccc---------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR--------- 79 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~--------- 79 (199)
...++|+++|++|||||||+|+|++... ....+..|++... ..+.+++ ..+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence 4568999999999999999999775443 1222333433332 3334444 367899999975432211
Q ss_pred ---cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHH--HH----HHHcCCcE
Q 029077 80 ---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV--TF----HRKKNLQY 149 (199)
Q Consensus 80 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~--~~----~~~~~~~~ 149 (199)
..+++.+|++++++|++++.+.+.. .+...+.. .++|+++|+||+|+.+.. ...+.. .+ ......++
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 2346779999999999876554432 22222222 479999999999987532 212111 22 22345789
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+++||++|.|++++|..+.+.+...
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999877543
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.9e-21 Score=149.59 Aligned_cols=159 Identities=13% Similarity=0.046 Sum_probs=111.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC-------CCCCc-------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTG-------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
+.+||+++|+.++|||||+++|... .+... .....|.+.......+......+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5689999999999999999998753 11100 011334444444444555667899999999999888
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcc-c----cHHHHHHHHHcC-----
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V----KAKQVTFHRKKN----- 146 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~-~----~~~~~~~~~~~~----- 146 (199)
.+..++..+|++|+|+|+++....+....| ..+.. .++| +++++||+|+.+.. . ..+..++++..+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 888889999999999999986443333333 33322 3778 68999999997521 1 123335555555
Q ss_pred CcEEEeccCCCCC----------hHHHHHHHHHHHhC
Q 029077 147 LQYYEISAKSNYN----------FEKPFLYLARKLAG 173 (199)
Q Consensus 147 ~~~~~~s~~~~~~----------v~~~~~~i~~~~~~ 173 (199)
++++++||++|.| +.++++.|.+.+..
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999998764 88889888887653
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=3.9e-20 Score=144.63 Aligned_cols=160 Identities=16% Similarity=0.114 Sum_probs=109.0
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcC---CCCCcccc--ceeEEEeeEEEEe-------------c--C----cEEEE
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF 64 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 64 (199)
...+.++|+++|+.++|||||+++|... .+..+..+ |....+....... . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3466799999999999999999997732 22223223 3333333222211 0 1 13789
Q ss_pred EEEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cH
Q 029077 65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KA 136 (199)
Q Consensus 65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~ 136 (199)
.+||+||++.|...+...+..+|++|+|+|+++. .+.+.+.. +. .....|+++++||+|+.+... ..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~-~~~~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQ-IIGQKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HH-HHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HH-HcCCCcEEEEEECccCCCHHHHHHHHH
Confidence 9999999998877777778899999999999964 23332222 21 123468999999999986432 12
Q ss_pred HHHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 137 KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 137 ~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+...+++. .+.+++++||++|.|+++++++|.+.+..
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 22344433 35789999999999999999999987753
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=6.3e-22 Score=155.69 Aligned_cols=155 Identities=19% Similarity=0.204 Sum_probs=102.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCcc---------------------------ccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~ 60 (199)
..+.++|+++|+.++|||||+++|+.. .+.... ....|.+.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 356799999999999999999998753 222110 001233333333344556
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHh------hcCCCcEEEEEeCCCCCCcc-
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------VCENIPIVLCGNKVDVKNRQ- 133 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~------~~~~~p~iiv~~K~D~~~~~- 133 (199)
...+.+|||||++.|...+..++..+|++|+|+|+++ .+|+....|.....+ .....|+++++||+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 6789999999999998888889999999999999998 556544333222221 11234689999999997621
Q ss_pred -------ccHHHHHHHHHcC-----CcEEEeccCCCCChHHHHH
Q 029077 134 -------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL 165 (199)
Q Consensus 134 -------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~ 165 (199)
...+...+++..+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1223345555555 6799999999999976543
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=3.1e-21 Score=143.22 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCcc-------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF------- 75 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------- 75 (199)
...++|+++|.+|+|||||+|+|+.... ...+ .+|.+.+........++..+.+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4579999999999999999999765433 2333 455555665555555556679999999997322
Q ss_pred cccc-------cccc-------------cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 76 GGLR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
.... ..++ ..+|+++++++.+.......-..++..+.. ++|+++|+||+|+......
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 1111 1111 236788888876642211111233444433 8999999999998653222
Q ss_pred H----HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
. .........++.++.+|+.++.|+.+++.+|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 22345556788999999999999999999988765
No 158
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=3.8e-20 Score=142.03 Aligned_cols=157 Identities=17% Similarity=0.070 Sum_probs=102.9
Q ss_pred eE-EEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCccc---------ccccccc
Q 029077 14 FK-LVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDG 81 (199)
Q Consensus 14 ~~-i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 81 (199)
++ |+++|++|||||||+|+|........ ...|. +.....+.+++ ..+.+|||+|.-. +... ..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HH
Confidence 44 99999999999999999876554211 11222 12223344444 5689999999622 2122 22
Q ss_pred cccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH---HHHHHHHHc---CCcEEEe
Q 029077 82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEI 152 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~---~~~~~~~~~---~~~~~~~ 152 (199)
.+..+|++++|+|++++. .......|...+.... .+.|+++|+||+|+.+..... ....++... +.+++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999998876 4555555655555432 578999999999997643211 111223333 2368999
Q ss_pred ccCCCCChHHHHHHHHHHHhCCC
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
||++|.|++++++.|.+.+....
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ECCCCcCHHHHHHHHHHHhcccC
Confidence 99999999999999998776433
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.1e-20 Score=153.73 Aligned_cols=154 Identities=20% Similarity=0.183 Sum_probs=103.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------------------ccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 60 (199)
..+.+||+++|.+++|||||+++|+.....-.. ....|++.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 466899999999999999999998754221000 001244433333444456
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-c
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V 134 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~ 134 (199)
...+.+|||||++.+......++..+|++|+|+|++++. ++ .........+.......|+++|+||+|+.+.. .
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 678999999999999888888999999999999999753 11 11122222222222334599999999997621 1
Q ss_pred -----cHHHHHHHHHc-----CCcEEEeccCCCCChHHH
Q 029077 135 -----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 135 -----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~ 163 (199)
..+...+.... .++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11222334333 357999999999999875
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=4.7e-21 Score=149.59 Aligned_cols=162 Identities=15% Similarity=0.093 Sum_probs=112.4
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHhcC--------CCCCc-------cccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (199)
......++|+++|+.++|||||+++|... .+... ...+.|.+.......+......+.+|||||+
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 34567899999999999999999998752 11110 0113444444444455556678999999999
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc-cc----cHHHHHHHHHcC
Q 029077 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QV----KAKQVTFHRKKN 146 (199)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~-~~----~~~~~~~~~~~~ 146 (199)
+.|......++..+|++|+|+|++++...+ ...++..+... ++| +++++||+|+.+. .. ..+...++...+
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888888889999999999998865333 33444444333 778 8899999999742 11 112334555554
Q ss_pred -----CcEEEeccCCCCC------------------hHHHHHHHHHHHh
Q 029077 147 -----LQYYEISAKSNYN------------------FEKPFLYLARKLA 172 (199)
Q Consensus 147 -----~~~~~~s~~~~~~------------------v~~~~~~i~~~~~ 172 (199)
.+++++||++|.| +.++++.|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6799999999977 6777777776654
No 161
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.84 E-value=6.3e-21 Score=145.50 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=89.0
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
..+.+.+||++|++.++..+..++++++++|+|||++ +..++.+...|+..+... .++.|+++|+||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 677888888888877654 3689999999999
Q ss_pred CCCCccc-----------------------cHHHHHHHHH----------------cCCcEEEeccCCCCChHHHHHHHH
Q 029077 128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
|+.+... ..+...++.. ..+.+++|||+++.|++++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9853211 1222333221 223468999999999999999999
Q ss_pred HHHhC
Q 029077 169 RKLAG 173 (199)
Q Consensus 169 ~~~~~ 173 (199)
+.+..
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 162
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=4.1e-20 Score=141.53 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=84.9
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~ 127 (199)
..+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.+...|+..+... ..+.|+|+++||.
T Consensus 199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~ 278 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 278 (362)
T ss_dssp TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence 35789999999999999999999999999999999998 67888888888877654 3689999999999
Q ss_pred CCCCcc-----------------cc-HHHHHHH--------H---HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 128 DVKNRQ-----------------VK-AKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 128 D~~~~~-----------------~~-~~~~~~~--------~---~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
|+.+.. .. .+...++ + ..++.+++|||+++.|++++|.++.+.+..
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 985321 22 2333333 1 345778999999999999999999988763
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=4.8e-20 Score=149.21 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEE------------EecCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~ 74 (199)
++..+|+++|+.++|||||+++|+...... ....+.|........ ..+.....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 456899999999999999999987543321 122233333222110 0011123689999999999
Q ss_pred ccccccccccCCcEEEEEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cH-
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA- 136 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~- 136 (199)
|...+..++..+|++|+|+|+++ +.++..+.. +.. .++|+++++||+|+..... ..
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 99998888999999999999998 555443322 222 4899999999999864211 00
Q ss_pred ----------HHHHHHHHc---------------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 137 ----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+........ ..+++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 011111122 237999999999999999999998765
No 164
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.9e-21 Score=147.11 Aligned_cols=161 Identities=17% Similarity=0.289 Sum_probs=86.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC-CCCcc--------ccceeEEEeeEEEEecCcEEEEEEEeCCCc-------cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (199)
...++|+|+|++|+|||||+++|+... +...+ .++.+...........+..+.+.+|||+|. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999966432 22222 134444444444444555678999999998 55
Q ss_pred cccccc-------ccccCCcE-----------EEEEEeCCC-hhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077 75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (199)
Q Consensus 75 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~ 134 (199)
+..... .++..+++ .+++|++++ ..++..+. .|+..+ ..++|+|+|+||+|+.....
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 555554 44433322 234555444 34454444 343333 35799999999999976332
Q ss_pred c----HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077 135 K----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (199)
Q Consensus 135 ~----~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~ 175 (199)
. .+...++...+++++++||++|.+ .+.|..+.+.+.+..
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 2 233456667789999999999998 888888888776543
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=3.6e-20 Score=142.51 Aligned_cols=143 Identities=7% Similarity=-0.032 Sum_probs=103.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (199)
+|+++|..++|||||+++|+ ..|.+.......+......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999976 23333333333444456679999999999988777778899999999999
Q ss_pred CCChhhHhcHHHHHHHHHhhcCCCcE-EEEEe-CCCCCCccccH----HHHHHHHHc---CCcEEE--eccCC---CCCh
Q 029077 95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF 160 (199)
Q Consensus 95 ~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~-K~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~~v 160 (199)
++. .+.....+...+... +.|. ++++| |+|+ +..... +..++++.. .+++++ +||++ |.|+
T Consensus 93 -~~g-~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CCC-CcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 543 233344444444333 6777 88888 9999 532211 222334333 368999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 029077 161 EKPFLYLARKLA 172 (199)
Q Consensus 161 ~~~~~~i~~~~~ 172 (199)
+++++.|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988765
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=6e-20 Score=144.46 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC--CCc----------cccc-------------------eeEEEeeEEEEecC
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC 59 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~ 59 (199)
...+||+++|..++|||||+++|+.... ... ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999875431 000 0011 12222222223344
Q ss_pred cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc------
Q 029077 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------ 133 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~------ 133 (199)
....+.+|||||++.|...+..++..+|++|+|+|++++...+ ...++..+... ...|+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence 5678999999999998888888899999999999999864322 22333333222 233689999999997621
Q ss_pred ccHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077 134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (199)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
...+...+++..+ .+++++||++|.|+.++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1122335566666 67999999999999874
No 167
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=2.1e-20 Score=141.24 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=90.2
Q ss_pred CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeC
Q 029077 59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126 (199)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K 126 (199)
.+.+.+.+||++|++.++..+..++++++++|+|+|++ +..++.+...|+..+... ..++|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 35688999999999999999999999999999999998 567777777777776653 368999999999
Q ss_pred CCCCCccc-----------------cHHHHHHHH----------------H-----------cCCcEEEeccCCCCChHH
Q 029077 127 VDVKNRQV-----------------KAKQVTFHR----------------K-----------KNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 127 ~D~~~~~~-----------------~~~~~~~~~----------------~-----------~~~~~~~~s~~~~~~v~~ 162 (199)
.|+.+... ..+...+.. . ..+.+++|||+++.+++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 99854211 112222111 1 246789999999999999
Q ss_pred HHHHHHHHHhC
Q 029077 163 PFLYLARKLAG 173 (199)
Q Consensus 163 ~~~~i~~~~~~ 173 (199)
+|..+.+.+..
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=7.9e-20 Score=130.37 Aligned_cols=156 Identities=14% Similarity=0.056 Sum_probs=96.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------cccccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~ 80 (199)
....+|+++|++|||||||++++.+..+...+.++.|.+........++ .+.+||++|... ++....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4567999999999999999999765554444556667655433333332 577999999742 122222
Q ss_pred ccc---cCCcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcC--CcE
Q 029077 81 GYY---IHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQY 149 (199)
Q Consensus 81 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~--~~~ 149 (199)
.++ ..++++++++|+++..+... +..|+. . .+.|+++++||+|+.+... ......++.... +.+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 233 56899999999987654321 222322 2 3789999999999875321 122334444443 568
Q ss_pred EEeccCCCCChHHHHHHHHHHHhCC
Q 029077 150 YEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 150 ~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
+++|++++.|++++++.|.+.+.+.
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC--
T ss_pred EEEeecCCCCHHHHHHHHHHHHhhc
Confidence 8999999999999999998877543
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=3.4e-21 Score=152.59 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=103.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (199)
++..+|+++|+.++|||||+++|....+.....+ |.+.......+...+..+.+|||||++.|...+...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 4567999999999999999999875443322211 11111111122223457899999999999999988899999999
Q ss_pred EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---ccHHH---HHHHHHc--CCcEEEeccCCCCChHH
Q 029077 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQ---VTFHRKK--NLQYYEISAKSNYNFEK 162 (199)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~~~~~---~~~~~~~--~~~~~~~s~~~~~~v~~ 162 (199)
+|+|++++...+....| ..+.. .++|+++++||+|+.+.. ...+. ..+...+ .++++++||++|.|+++
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EEeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 99999885433333332 22222 488999999999996421 11110 0011222 26899999999999999
Q ss_pred HHHHHHH
Q 029077 163 PFLYLAR 169 (199)
Q Consensus 163 ~~~~i~~ 169 (199)
++++|..
T Consensus 157 Lle~I~~ 163 (501)
T 1zo1_I 157 LLDAILL 163 (501)
T ss_dssp HHHHTTT
T ss_pred hhhhhhh
Confidence 9988764
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=1e-20 Score=149.84 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=89.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc--CCCCCc---------------------------cccceeEEEeeEEEEecCcE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 61 (199)
...++|+++|+.++|||||+++|+. +.+... .....|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999863 222100 00012222222212233345
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhcHHHHHHHHHh-hcCCCc-EEEEEeCCCCCCcc---
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ--- 133 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~-~~~~~p-~iiv~~K~D~~~~~--- 133 (199)
..+.+|||||++.|...+...+..+|++|+|+|++++. +|.....|...+.. ...++| +++++||+|+.+..
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 78999999999999888888899999999999999873 44322222222221 123677 99999999996421
Q ss_pred -----ccHHHHHHHHHc-------CCcEEEeccCCCCChHHHH
Q 029077 134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF 164 (199)
Q Consensus 134 -----~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~ 164 (199)
...+...+++.. +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 111233455544 3569999999999998755
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=8.6e-20 Score=154.64 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=110.8
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
..++.++|+++|+.++|||||+++|.... +.. ....+.|++.......++.....+.+|||||++.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 45678999999999999999999987521 000 1123455555544445556678899999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc-----cHHHHHHHHHcC--
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-- 146 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~-----~~~~~~~~~~~~-- 146 (199)
|...+..++..+|++|+|+|++++...+ ...++..+... ++| +|+++||+|+.+... ..+...++...+
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 9888888899999999999999875433 33344444333 778 789999999975221 123335555554
Q ss_pred ---CcEEEeccCCC--------CChHHHHHHHHHHHh
Q 029077 147 ---LQYYEISAKSN--------YNFEKPFLYLARKLA 172 (199)
Q Consensus 147 ---~~~~~~s~~~~--------~~v~~~~~~i~~~~~ 172 (199)
++++++||++| .|+.++++.|.+.+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 468888888877654
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=2.1e-20 Score=147.78 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCc------------------c---------ccceeEEEeeEEEEecCcE
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK------------------Y---------EPTIGVEVHPLDFFTNCGK 61 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~ 61 (199)
++.++|+++|..++|||||+++|+.. .+... + ....|.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999998753 22110 0 0012333322233444566
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHh---cHHHHHHHHHhhcCCCc-EEEEEeCCCCCC--c
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R 132 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~--~ 132 (199)
..+.+|||||++.|......++..+|++|+|+|++++. +|+ ........... .+.| +++++||+|+.+ .
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence 78999999999999888888899999999999999763 332 11222222222 3565 899999999973 1
Q ss_pred c----ccHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077 133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 163 (199)
Q Consensus 133 ~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~ 163 (199)
. ...+...+++..+ ++++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1122334455554 68999999999998743
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=6.7e-20 Score=137.61 Aligned_cols=158 Identities=12% Similarity=0.127 Sum_probs=99.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----cccee----------------------EEEe------------
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------ 51 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~----------------------~~~~------------ 51 (199)
.....+|+|+|.+|||||||+|+|++..+.+.. .+..+ ++..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 456689999999999999999998876653111 11111 0000
Q ss_pred -----------eEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccCCcEEE-EEEeCCChhhHhcHH
Q 029077 52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP 105 (199)
Q Consensus 52 -----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 105 (199)
...+.+. .....+.+|||||... +......++..++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0001110 1136789999999642 3334456677887666 799998765544433
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHHH-HHH--cC-CcEEEeccCCCCChHHHHHHHHH
Q 029077 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF-HRK--KN-LQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~~-~~~--~~-~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
.+...+.. .+.|+++|+||+|+.+... ..+...- ... .+ .+++++||++|.|+++++..|.+
T Consensus 183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 44444433 3789999999999975432 2222110 001 12 35788999999999999999887
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=3.6e-20 Score=150.32 Aligned_cols=151 Identities=22% Similarity=0.221 Sum_probs=81.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG 60 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 60 (199)
..+.++|+++|++++|||||+++|+... ... ......|++.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4677899999999999999999985310 000 00012344444444444455
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hH--hcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc--
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-- 132 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~-- 132 (199)
...+.+|||||+..|...+...+..+|++|+|+|++++. .+ ......+..+... .++| +|+|+||+|+.+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccH
Confidence 678999999999999888888899999999999998653 22 1111111122222 2555 8999999999751
Q ss_pred cc----cHHHHHHH-HHcCC-----cEEEeccCCCCChH
Q 029077 133 QV----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE 161 (199)
Q Consensus 133 ~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~ 161 (199)
.. ..+...+. +..++ +++++||++|.|+.
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 11 11222344 34454 69999999999997
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=6.1e-19 Score=141.29 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=80.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------ccccceeEEEeeEEEEecCcEEEEEEEeC
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (199)
..+..+|+++|++|+|||||+++|+... ... ....+.|.+.......+....+.+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 3567899999999999999999988521 100 01123344433333444456688999999
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
||+..|......++..+|++|+|+|++++...+. ..+...... .++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence 9999988888888999999999999987642221 112222221 3789999999999864
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.6e-18 Score=142.59 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC----C---------cccc---ceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----K---------KYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~----~---------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
.+..+|+++|++|+|||||+++|+..... . .+.+ ..+.+.......+....+.+++|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 34578999999999999999998732211 0 0000 123333333334444568899999999999
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
+......+++.+|++++|+|+++....+.. .+...+.. .++|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence 888888889999999999998876443322 33333333 389999999999987
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=2.3e-18 Score=142.07 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=83.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC--c------cc------cceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--K------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
..+..+|+|+|..|+|||||+++|+. +.... . .. ...+.+.......+....+.+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 35678999999999999999999873 11100 0 00 012223222223333346889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
.+......+++.+|++|+|+|+++..+.+....|.. +.. .++|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 988888888999999999999998877766665553 222 3899999999999865
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=5.1e-18 Score=131.93 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc----ccccccc---ccC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDGY---YIH 85 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~~---~~~ 85 (199)
.|+++|++|||||||++.+...... .....|...... .+..++ ...+.+||++|.... ..+...+ ...
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee--EEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 5899999999999999996644210 011111111111 122222 357889999997431 1222222 357
Q ss_pred CcEEEEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
++.++.++|++ ...+..+..|..++.... ...|.++++||.|+............+...+..++.+||+++.|+++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 99999999998 556666777776666543 36899999999999876222233345555678999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 029077 163 PFLYLARKLAGDPN 176 (199)
Q Consensus 163 ~~~~i~~~~~~~~~ 176 (199)
++.+|.+.+.+.+.
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999987654
No 179
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=7.1e-19 Score=131.98 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=84.8
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcC-CCCCcc--------ccceeEEEeeEEEEecCcEEEEEEEeCCCc-------
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ------- 72 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~------- 72 (199)
...-.++|+++|++|||||||++++.+. .++... .++.+...........+....+.+||++|.
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 3456689999999999999999997653 333222 112111111122222334578999999997
Q ss_pred cccccccc-------cccc-------------CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 73 EKFGGLRD-------GYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 73 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
+.+..... .++. .+++++++.+.+. .+++.... ..+.....+.++++|+||.|+...
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCH
Confidence 44444333 2222 1233444444332 23333331 333333457899999999999753
Q ss_pred cc----cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 133 ~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~ 176 (199)
.. ..+..++++..++.++++||++| +++++|..+++.+.+...
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 22 12445778888999999999999 999999999998875443
No 180
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=3.4e-17 Score=121.22 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccc---------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------- 81 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~--------- 81 (199)
...++|+++|.+|+|||||+|+|+...+. ...++.+.+..............+.+|||||...+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46799999999999999999998865542 12223333433334444445678999999998765433221
Q ss_pred cccCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCC---CcEEEEEeCCCCCC
Q 029077 82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN 131 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~---~p~iiv~~K~D~~~ 131 (199)
....+|++++|+|++.. ++... ..|+..+...+.. .|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 12478999999998753 34333 3667766655432 69999999999864
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.76 E-value=6.5e-18 Score=124.58 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc-----
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI----- 84 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 84 (199)
.++.++|+++|..|+|||||+++|+...... ..+..+.+.......+......+.+|||||+..+......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4578999999999999999999988665321 1222233333333333334568999999999877655544433
Q ss_pred ----CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077 85 ----HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 130 (199)
Q Consensus 85 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~---~~p~iiv~~K~D~~ 130 (199)
.+|++++|++++... +... ..|+..+..... ..|+++|+||+|+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999987654 4333 356666666543 25999999999985
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=6.2e-17 Score=133.79 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCc--------cc------cceeEEEeeEEEEe-------cCcEEEEEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--------YE------PTIGVEVHPLDFFT-------NCGKIRFYC 66 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~--------~~------~~~~~~~~~~~~~~-------~~~~~~~~l 66 (199)
..+..+|+|+|..|+|||||+++|+.. .+... .. ...|.+.......+ ++..+.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 346689999999999999999998642 11110 00 01222322221222 223489999
Q ss_pred EeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
|||||+..|......+++.+|++|+|+|+++....+....|.. ... .++|+++|+||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence 9999999988888888999999999999998765554444432 222 3799999999999864
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=3.8e-17 Score=134.88 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=83.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCCc--------ccc------ceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
..+..+|+++|.+|+|||||+++|+. +..... ... ..+.+.......+....+.+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999874 222100 000 12233322223333346889999999999
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
.+......+++.+|++|+|+|+++..+.+....|.. +.. .+.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 988888888999999999999998776666555543 333 3899999999999865
No 184
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=1.9e-18 Score=129.71 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=105.4
Q ss_pred HHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHhcHH
Q 029077 28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP 105 (199)
Q Consensus 28 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 105 (199)
+|+.++..+.|. ..+.||.|..+. ... .... .+.+||+ +++++.++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~--~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP--DETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EEC--CCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEE--cCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577777778887 788899994433 332 2222 7899999 8899999999999999999999999987 688888
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCCCChHHHHHHHH
Q 029077 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~ 168 (199)
.|+..+.. .++|+++|+||+|+.+.....+...++...+ ..++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99987765 4899999999999976433233445555555 8999999999999999997764
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=5.7e-17 Score=122.52 Aligned_cols=113 Identities=11% Similarity=0.089 Sum_probs=71.3
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077 62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV 127 (199)
Q Consensus 62 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~ 127 (199)
..+.+|||||... +......++..+|++++|+|..+.. .......+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 5789999999753 2334455678999999999974332 11222233333322 378999999999
Q ss_pred CCCCccc-cHHHHH-HHHHcCCcEEEeccCC------CCChHHHHHHHHHHHhCCCC
Q 029077 128 DVKNRQV-KAKQVT-FHRKKNLQYYEISAKS------NYNFEKPFLYLARKLAGDPN 176 (199)
Q Consensus 128 D~~~~~~-~~~~~~-~~~~~~~~~~~~s~~~------~~~v~~~~~~i~~~~~~~~~ 176 (199)
|+.+... ..+... .....+..++++++.+ +.|+.+++..+.+.+...+.
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 9975433 122211 0011225677766543 78899999999998877665
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=3.8e-17 Score=134.95 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=76.0
Q ss_pred EEEEEeCCCccc---ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccH--
Q 029077 63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-- 136 (199)
Q Consensus 63 ~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~-- 136 (199)
.+.+|||||... .......++..+|++|+|+|+++..+......|...+.. .+.|+++|+||+|+.... ...
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence 589999999654 233445678899999999999887666665555544432 267899999999986432 000
Q ss_pred ---------HHH----H-HHHH--------cCCcEEEeccC--------------CCCChHHHHHHHHHHHhC
Q 029077 137 ---------KQV----T-FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 137 ---------~~~----~-~~~~--------~~~~~~~~s~~--------------~~~~v~~~~~~i~~~~~~ 173 (199)
... . +... ....++++||+ +|.|+.+++..|.+.+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 010 0 1111 12468999999 999999999999887754
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.4e-18 Score=134.67 Aligned_cols=85 Identities=26% Similarity=0.288 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-cc-----ccceeEEEeeEE---------------EEecC-cEEEEEEEeCCC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLD---------------FFTNC-GKIRFYCWDTAG 71 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g 71 (199)
++|+++|.+|||||||+|+|....... .+ .+..|....... ..+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999987654211 11 122222111100 00122 247899999999
Q ss_pred ccc----ccccc---cccccCCcEEEEEEeCCCh
Q 029077 72 QEK----FGGLR---DGYYIHGQCAIIMFDVTAR 98 (199)
Q Consensus 72 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 98 (199)
... .+.+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 22222 2456899999999999874
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=127.74 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=80.1
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-Y-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--- 77 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--- 77 (199)
...-.++|+|+|++|||||||++.|++..+... . .++.+...........+....+.+||++|......
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 445568999999999999999999776544211 1 12222222122222223345789999999754311
Q ss_pred ----------------------cccccccCCcEEEEEEeCCCh-hhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077 78 ----------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133 (199)
Q Consensus 78 ----------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~ 133 (199)
....++.++++.+++|..... .++.... .|+..+. .++|+|+|+||+|+....
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence 113345555654455554432 3444443 4665553 479999999999987532
Q ss_pred c-c---HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077 134 V-K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 134 ~-~---~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
. . .+....+...++.++++|+.++.+++++|..+...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2 2 233466777899999999999999999887777654
No 189
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.70 E-value=4.6e-17 Score=125.71 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=91.7
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D 128 (199)
.+.+.+||++|++.++..+..++++++++|+|||+++ ..++.+...|+..+... ..+.|+++|+||.|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 4899999999999999999999999999999999998 78899999999888764 36899999999999
Q ss_pred CCCccc--------------------------------cHHHHHH-----HHH--------cCCcEEEeccCCCCChHHH
Q 029077 129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP 163 (199)
Q Consensus 129 ~~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~s~~~~~~v~~~ 163 (199)
+.+... ..+...+ +.. ..+.+++|||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 854211 1122222 222 2456789999999999999
Q ss_pred HHHHHHHHhC
Q 029077 164 FLYLARKLAG 173 (199)
Q Consensus 164 ~~~i~~~~~~ 173 (199)
|.++.+.+..
T Consensus 376 F~~v~~~I~~ 385 (402)
T 1azs_C 376 FNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=2.8e-16 Score=126.45 Aligned_cols=117 Identities=16% Similarity=0.107 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCC--------------------CCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (199)
+.=+|+|+|+.++|||||..+|+...- ........|++.......+..+++.++++||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 456899999999999999999862110 011122345555555555666789999999999
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
+..|.......++-+|++|+|+|+.++-.-+....|.... . .++|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~--~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-M--RATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-H--hCCceEEEEecccchh
Confidence 9999999999999999999999999886666655664433 2 3899999999999864
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.67 E-value=6.4e-17 Score=124.10 Aligned_cols=103 Identities=8% Similarity=-0.029 Sum_probs=70.9
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-H
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V 139 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~ 139 (199)
.+.+.++||+|... .....+..+|++++|+|.........+... ..+.|.++|+||+|+.+....... .
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 47889999999432 233445889999999998765544332211 124689999999999753222211 1
Q ss_pred HHHH----------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 140 ~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
.+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1211 125789999999999999999999988754
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=5.8e-17 Score=124.68 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=68.6
Q ss_pred EEEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCC
Q 029077 62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127 (199)
Q Consensus 62 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~ 127 (199)
..+.+|||||...+ ......++.++|++|+|++..+..... ..|...+.... .+.|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 46899999998765 445567789999999999875443222 23333333332 367999999999
Q ss_pred CCCCccc-cHHHH-HHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077 128 DVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (199)
Q Consensus 128 D~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~~ 166 (199)
|+.+... ..+.. ......+.+|+.+++.++.++++.+..
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 9875332 22211 233345678999999998888765544
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=2.6e-17 Score=126.26 Aligned_cols=158 Identities=11% Similarity=0.113 Sum_probs=91.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccceeE----------------------E--------------
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGV----------------------E-------------- 49 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~----------------------~-------------- 49 (199)
.....+|+|+|.+|||||||+|+|++..+.+.. ....+. +
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 345679999999999999999998876552111 111110 0
Q ss_pred ---------EeeEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccCCc-EEEEEEeCCChhhHhcHH
Q 029077 50 ---------VHPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVP 105 (199)
Q Consensus 50 ---------~~~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 105 (199)
.......+. .....+.+|||||... ++.....++..++ +++++.+++....-....
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000011111 1135789999999632 2334445665555 555566665432222222
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHH---HHHHcC-CcEEEeccCCCCChHHHHHHHHH
Q 029077 106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
.+...+.. .+.|+++|+||+|+.+... ..+... +....+ ..++.+||++|.|++++++.+.+
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 23333322 3789999999999975432 121111 000112 24678999999999999998876
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=3.7e-16 Score=112.17 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=90.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEE--------------eeEEEEe----------------cCcE
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGK 61 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~ 61 (199)
...+|+++|.+|||||||+++|+..............+. ....... ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999875422111000000000 0000000 1124
Q ss_pred EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc--cccHHHH
Q 029077 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVKAKQV 139 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~--~~~~~~~ 139 (199)
+.+.+||++|..... ..+....+.+++|+|+++... ....+... .+.|.++|+||+|+.+. ....+..
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHHH
Confidence 577899998851110 111125678999999876532 11111111 15788999999998653 1222333
Q ss_pred HHHHHc--CCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 140 TFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 140 ~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
..+... ..+++++|+++|.|+++++.+|.+.+..
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 344332 4689999999999999999999988754
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.61 E-value=1.2e-15 Score=128.27 Aligned_cols=117 Identities=18% Similarity=0.161 Sum_probs=85.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC------c--------cc--cceeEEEeeEEEE------------ecCc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------K--------YE--PTIGVEVHPLDFF------------TNCG 60 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~------~--------~~--~~~~~~~~~~~~~------------~~~~ 60 (199)
.+..||+|+|+.++|||||+++|+... ... . .. .|.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356799999999999999999987531 100 0 00 1111111222222 2345
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
.+.+.+|||||+.+|......+++.+|++|+|+|++++.+++....|.... . .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcc
Confidence 789999999999999998999999999999999999988777766665433 2 378999999999986
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.60 E-value=3e-14 Score=108.69 Aligned_cols=82 Identities=21% Similarity=0.062 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCc-c-ccceeEEEeeEEEEecCc---------------EEEEEEEeCCCccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK-Y-EPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG 76 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~ 76 (199)
++|+++|.+|||||||+|+|........ + ..|.+.... .+.+.+. ...+.+||+||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 7899999999999999999886553211 1 112221111 1222221 1578999999987642
Q ss_pred ----ccc---cccccCCcEEEEEEeCCC
Q 029077 77 ----GLR---DGYYIHGQCAIIMFDVTA 97 (199)
Q Consensus 77 ----~~~---~~~~~~~d~~i~v~d~~~ 97 (199)
.+. ..+++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 234789999999999986
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=9.3e-16 Score=117.28 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=62.9
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHH
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV 139 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~ 139 (199)
.+.+.++||+|... ........+|.+++|+|++.+...+.+.. .+ -+.|.++|+||+|+.+..... ...
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 46789999999532 12334678999999999987543222211 11 256889999999996432111 111
Q ss_pred HHHH----------HcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 140 ~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
.+.. .+..+++.+|+++|.|+++++++|.+.+.
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1211 12456899999999999999999988764
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.59 E-value=7.9e-15 Score=105.58 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe------------eEEEEec-Cc-----------------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG----------------- 60 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~----------------- 60 (199)
.+..+|+++|.+|||||||+++|+...+...+.++.+.+.. ......+ +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 35689999999999999999998866554444444443322 1111111 10
Q ss_pred --EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccH
Q 029077 61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA 136 (199)
Q Consensus 61 --~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~ 136 (199)
...+.+.|++|.-.. ...+-...+..+.+.|......... .....+ ..|.++|+||+|+.+.. ...
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence 113444555542110 0011122344556666432211110 001111 57889999999987532 223
Q ss_pred HHHHHHHHc--CCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 137 KQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
+....++.. +.+++++||++|.|++++|.+|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 333444433 5789999999999999999999987753
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=2.3e-15 Score=121.29 Aligned_cols=120 Identities=20% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCC---Cccccce----eEEEeeE-EEEec----------------------Cc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTI----GVEVHPL-DFFTN----------------------CG 60 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~----~~~~~~~-~~~~~----------------------~~ 60 (199)
....+|+|+|.+|+|||||+|+|++..+. ....++. ++..... ....+ ++
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45789999999999999999998876652 1111111 0000000 00000 00
Q ss_pred E----------EEEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc
Q 029077 61 K----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP 119 (199)
Q Consensus 61 ~----------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p 119 (199)
. ..+.+|||||... +......++..+|++++|+|+++.........|+..+... +.|
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK 220 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence 0 2588999999764 2234455678899999999998754444445565555432 578
Q ss_pred EEEEEeCCCCCCc
Q 029077 120 IVLCGNKVDVKNR 132 (199)
Q Consensus 120 ~iiv~~K~D~~~~ 132 (199)
+++|+||+|+.+.
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 9999999999764
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=9.2e-16 Score=125.68 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (199)
-||+|+|+.++|||||..+|+. +.... ......|++.......+..+++.++++||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999873 21110 0011235555555555666778899999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
.....++-+|++|+|+|+.++-.-+....|.... .+ ++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-KM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-HH--TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-Hc--CCCeEEEEecccccc
Confidence 9999999999999999999876555544454433 22 889999999999754
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=4.2e-15 Score=113.42 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--- 137 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--- 137 (199)
.+.+.++||||...... .....+|++++|+|++....++.+... . .+.|.++|+||+|+.+......
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCChHHHHHHHH
Confidence 46899999999654322 245889999999999765433322111 0 1467899999999976422111
Q ss_pred -HHHHHHHc-------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 138 -QVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 138 -~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
........ ..+++++||++|.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 356899999999999999999998764
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.55 E-value=1.7e-14 Score=106.13 Aligned_cols=112 Identities=15% Similarity=0.057 Sum_probs=68.7
Q ss_pred EEEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCChhh---HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
.+.+.+|||||......... ..+.. +++++++|+....+ +.....+.... ....+.|+++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEecccccc
Confidence 35899999999865432211 23455 88888888754322 22111111111 1123789999999999875
Q ss_pred ccccHHHHH----------------------------HHHHcC--CcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077 132 RQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 132 ~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~~~~~ 174 (199)
.....+..+ ++...+ .+++++||++|.|+++++.+|.+.+...
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 331111000 112322 4799999999999999999999887543
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1.4e-13 Score=114.19 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC--------CCCC--------ccccceeEEEeeEEEEe--c-----CcEEEEEEEe
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTG--------EFEK--------KYEPTIGVEVHPLDFFT--N-----CGKIRFYCWD 68 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~--~-----~~~~~~~l~D 68 (199)
+.-+|+|+|+.++|||||..+|+.. .... ......|++.....+.+ . ..++.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3448999999999999999997731 1110 01123344443333222 2 2468999999
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
|||+.+|.......++-+|++|+|+|+.++-..+....|...... ++|.++++||+|...
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence 999999999999999999999999999987665555555554433 899999999999753
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=2.7e-13 Score=103.96 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-C-----ccccceeEEEeeEE--------EEec-----CcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLD--------FFTN-----CGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~-~-----~~~~~~~~~~~~~~--------~~~~-----~~~~~~~l~D~~g~~~ 74 (199)
++|+++|.+|||||||+|++...... . ...++.|....... +... .....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999998754311 1 12233332110000 0000 0235799999999876
Q ss_pred ccc----cc---cccccCCcEEEEEEeCCC
Q 029077 75 FGG----LR---DGYYIHGQCAIIMFDVTA 97 (199)
Q Consensus 75 ~~~----~~---~~~~~~~d~~i~v~d~~~ 97 (199)
+.. +. ...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 432 21 234689999999999985
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.44 E-value=5e-13 Score=110.40 Aligned_cols=165 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCcc-ccce------------------------------------------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-EPTI------------------------------------------ 46 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~-~~~~------------------------------------------ 46 (199)
....+|+|+|..++|||||+|.|++..+ +... ..|.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4456999999999999999999887554 1110 0010
Q ss_pred -----eEEEeeEEEEec-CcEEEEEEEeCCCcccc-------------cccccccc-cCCcEEEEEEeCCChhhHhcHHH
Q 029077 47 -----GVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPT 106 (199)
Q Consensus 47 -----~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 106 (199)
+++.......+. .....+.++||||.... ......++ ..+|++++|+|++..........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000001111110 11235789999995431 11223333 57899999999986543333323
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH----cC-CcEEEeccCCCCChHHHHHHHHHH---HhCCCCC
Q 029077 107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL 177 (199)
Q Consensus 107 ~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~i~~~---~~~~~~~ 177 (199)
+...+.. .+.|+++|+||+|+.+............. .+ .+++.+||++|.|++++++.+.+. +.+.|.+
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y 285 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY 285 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence 4444433 27899999999999754332211111111 12 246778999999999999998873 5455544
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.6e-12 Score=98.56 Aligned_cols=116 Identities=14% Similarity=0.020 Sum_probs=75.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----c---cccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYI 84 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~ 84 (199)
...+|+++|.|+||||||+|+|.+.. .......+++..+....+...+..+.+.|+||.-.... . ....++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 34689999999999999999977543 22233344455554444444567899999999643211 1 123467
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCC
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN 131 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~ 131 (199)
.+|++++|+|++++..- ......++... ..+.|.+++.||.|...
T Consensus 149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 89999999999986432 22222233322 24678888999999743
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=1.6e-12 Score=97.49 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=77.8
Q ss_pred cccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCC
Q 029077 72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL 147 (199)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~ 147 (199)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+...+++..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 5677788888999999999999999886 78888889887665 4899999999999976431 2334566777789
Q ss_pred cEEEeccCCCCChHHHHHHHH
Q 029077 148 QYYEISAKSNYNFEKPFLYLA 168 (199)
Q Consensus 148 ~~~~~s~~~~~~v~~~~~~i~ 168 (199)
+++++||++|.|+++++..+.
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHhhcc
Confidence 999999999999999887653
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=2.6e-12 Score=97.73 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=61.8
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH-H
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-Q 138 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~-~ 138 (199)
.+.+.++||+|..... ......+|.+++++|.......+.+.... . ..+.++++||+|+.. ...... .
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence 5688999999964321 23357899999999986543211111111 1 235577779999753 221111 1
Q ss_pred HHHHHH----------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 139 VTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 139 ~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
..+... +..+++.+|+++|.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122111 1356889999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=89.26 Aligned_cols=104 Identities=6% Similarity=-0.085 Sum_probs=68.2
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHH----Hhh--cCCCcEEEEEeCC-CCCCccccHHHHHH
Q 029077 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF 141 (199)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l----~~~--~~~~p~iiv~~K~-D~~~~~~~~~~~~~ 141 (199)
.+|+..++.+|+.|+.++|++|||+|++|.+.++ ...-+..+ ... ..+.|++|++||. |++..-...+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3478899999999999999999999999886543 33322222 222 2578999999995 77654433333221
Q ss_pred HH----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 142 ~~----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
.. .....+..|||.+|.|+.+-++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 11 134568999999999999999999887654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=98.41 Aligned_cols=90 Identities=16% Similarity=-0.010 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc---------------EEEEEEEeCCCcccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 75 (199)
...++|+++|.+|||||||+|+|..........+....+.....+.+.+. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 34579999999999999999998765432211111111111112222221 235899999998764
Q ss_pred cc-------cccccccCCcEEEEEEeCCChhh
Q 029077 76 GG-------LRDGYYIHGQCAIIMFDVTARLT 100 (199)
Q Consensus 76 ~~-------~~~~~~~~~d~~i~v~d~~~~~s 100 (199)
.+ ....+++.+|++++|+|+++..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 43 23456789999999999986544
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.17 E-value=4.4e-11 Score=87.61 Aligned_cols=104 Identities=6% Similarity=-0.108 Sum_probs=73.8
Q ss_pred CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHH----HHHHHHhh--cCCCcEEEEEeC-CCCCCccccHHHHHH
Q 029077 69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT----WHRDLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF 141 (199)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~----~~~~l~~~--~~~~p~iiv~~K-~D~~~~~~~~~~~~~ 141 (199)
.+|+...+.+++.|+.++|++|+|+|++|.+.++ ... ....+.+. ..+.|++|++|| .|+.......+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678899999999999999999999999987544 222 22233222 368999999996 688765443333222
Q ss_pred HH----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077 142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (199)
Q Consensus 142 ~~----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~ 173 (199)
.. .....+..|||.+|+|+.+-++||.+.+..
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 11 134558999999999999999999988754
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=1.3e-09 Score=84.06 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=52.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEecCc---------------EEEEEEEeCCCccc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEK 74 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~ 74 (199)
....+|+++|++|||||||+|.|.+... .....|..........+.+.+. ...+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457999999999999999999876443 2111111111111112222221 13689999999543
Q ss_pred c-------cccccccccCCcEEEEEEeCCC
Q 029077 75 F-------GGLRDGYYIHGQCAIIMFDVTA 97 (199)
Q Consensus 75 ~-------~~~~~~~~~~~d~~i~v~d~~~ 97 (199)
. .......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 1123344688999999999864
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=1.2e-09 Score=83.95 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=73.5
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-H----HHHHHHc
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKK 145 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~----~~~~~~~ 145 (199)
..+.|+.....+.+.++++++|+|+++.. ..|...+.+...++|+++|+||+|+.+.....+ . ...++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 35678888888888999999999999853 446666666667899999999999976443221 1 2345666
Q ss_pred CC---cEEEeccCCCCChHHHHHHHHHHH
Q 029077 146 NL---QYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 146 ~~---~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
++ .++.+||++|.|++++++.|.+..
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 77 799999999999999999887654
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=2.8e-09 Score=82.89 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=67.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEEEeeEEEEecC--cEEEEEEEeCCCcccccc-----------
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG----------- 77 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~----------- 77 (199)
.++++|+|++|||||||+|.+++..+...... ..+.......+.... -...+.++|++|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 35799999999999999999765433221111 112222222222222 224788999987532100
Q ss_pred ---cc----ccc---------ccCC--cE-EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH
Q 029077 78 ---LR----DGY---------YIHG--QC-AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138 (199)
Q Consensus 78 ---~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~ 138 (199)
.. ..+ ...+ ++ ++++.|...+-+..+ ..++..+ ..+.|+|+|.||+|..........
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L---~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL---DSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT---CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH---hhCCCEEEEEcchhccchHHHHHH
Confidence 00 001 1122 23 445556543322221 1122222 258999999999998653322221
Q ss_pred H----HHHHHcCCcEEEeccC
Q 029077 139 V----TFHRKKNLQYYEISAK 155 (199)
Q Consensus 139 ~----~~~~~~~~~~~~~s~~ 155 (199)
. ......+++++.+|.-
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 1 2234456777777643
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.91 E-value=2.7e-10 Score=87.60 Aligned_cols=135 Identities=11% Similarity=0.040 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCC-----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----c---
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----D--- 80 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~--- 80 (199)
..+|+++|.+|+|||||+|+|+.... .....+..|++.....+.+... +.++||||........ .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 35899999999999999999875421 1223445566655555554433 7899999964432111 1
Q ss_pred -cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHH-HHHHcCCcEEEec
Q 029077 81 -GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS 153 (199)
Q Consensus 81 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~-~~~~~~~~~~~~s 153 (199)
.+ ....+.++++++.....-...+.. +..+. ..+.|+++++||.|..+........+ +.+..+......+
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence 11 245677888887632210010000 00011 13689999999999987655554443 3444454433333
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.91 E-value=1.2e-09 Score=86.86 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc-----CCCCC-----cccc-----------ceeEEEeeEEEE-------------
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KYEP-----------TIGVEVHPLDFF------------- 56 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~-----~~~~~-----~~~~-----------~~~~~~~~~~~~------------- 56 (199)
.+...|+++|.+||||||+++.|.. +.-.. .+.+ ..++++......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999762 11100 0000 001111110000
Q ss_pred ecCcEEEEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCC
Q 029077 57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV 129 (199)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~ 129 (199)
.....+.+.++||||...... .... . +..+|.+++|+|+..... .......+.. ..|+ ++|.||.|.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence 001356889999999654221 1111 1 227899999999987542 2222222322 2564 788999998
Q ss_pred CCccccHHHHHHHHHcCCcE------------------EEeccCCCCC-hHHHHHHHHHH
Q 029077 130 KNRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK 170 (199)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~i~~~ 170 (199)
...... ........+.++ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 753221 222233333332 3368889988 99888887765
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=2e-10 Score=88.45 Aligned_cols=142 Identities=13% Similarity=0.056 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCC----CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------c
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D 80 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~ 80 (199)
..+|+++|.+|+|||||+|+|+... ......+..|++.....+..... +.++||||........ .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3589999999999999999987541 11122223344444444444332 7899999964322111 1
Q ss_pred ccc--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCC
Q 029077 81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~ 157 (199)
.++ ...+.++++++.....-+..+.. +..+. ..+.|+++++||.|..+........ .+.+..+......++...
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~ 315 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYA 315 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGT
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhh
Confidence 111 56788889988743211100000 00011 1367999999999987655444443 344455655555555444
Q ss_pred CCh
Q 029077 158 YNF 160 (199)
Q Consensus 158 ~~v 160 (199)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 443
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=1.8e-08 Score=78.29 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce-eEE--EeeEEEEecCcEEEEEEEeCCCccccccccccc-----c
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-GVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y 83 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~ 83 (199)
....++++|++|||||||+|.+.+-.......-+. +.. ....... ......+.++|++|..........+ +
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34589999999999999999976522211111111 111 1111111 1111257889999853211111111 2
Q ss_pred cCCcEEEEEEeCC--ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC---------CccccHH----HHHHH----HH
Q 029077 84 IHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKAK----QVTFH----RK 144 (199)
Q Consensus 84 ~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~---------~~~~~~~----~~~~~----~~ 144 (199)
...+..++ ++.. ..... .....+.. .+.|+++|.||.|+- +.....+ ...++ ..
T Consensus 147 ~~~~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 6765 22111 12222222 278999999999852 1111111 12232 12
Q ss_pred cC---CcEEEecc--CCCCChHHHHHHHHHHHhCCCCCce
Q 029077 145 KN---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNLHF 179 (199)
Q Consensus 145 ~~---~~~~~~s~--~~~~~v~~~~~~i~~~~~~~~~~~~ 179 (199)
.+ ...+.+|+ .++.|++++.+.+.+.+.+.++..+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~ 259 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF 259 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence 22 35788899 6667799999999999877665543
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=7.6e-09 Score=76.71 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=70.4
Q ss_pred EeCCCcc-cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc
Q 029077 67 WDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK 145 (199)
Q Consensus 67 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~ 145 (199)
-..||+. .........+.++|+++.|+|++++.+... ..+.+...++|.++|+||+|+.+........++.+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~ 78 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQ 78 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence 3467764 233344556789999999999999877653 1122223589999999999998743333344555566
Q ss_pred CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077 146 NLQYYEISAKSNYNFEKPFLYLARKLA 172 (199)
Q Consensus 146 ~~~~~~~s~~~~~~v~~~~~~i~~~~~ 172 (199)
+++++.+||.++.|+++++..+.+.+.
T Consensus 79 g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 79 GIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 789999999999999999988877664
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=74.79 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcCCCCCccc------ccee-EEEeeEEEEecCc--EEEEEEEeCCCccccccc-----
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIG-VEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGL----- 78 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~------~~~~-~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~----- 78 (199)
.++++++|++|||||||+|.+.+...+.... +... .......+..... ...++++|++|.......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 3789999999999999999877422211100 0000 0001111111111 236789999874321000
Q ss_pred -c----------------------cccccCCcEEEEEEeCC-ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077 79 -R----------------------DGYYIHGQCAIIMFDVT-ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134 (199)
Q Consensus 79 -~----------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~ 134 (199)
. ...+..+.+.++++|.. .+-.-.. ...+..+. ...++++|.+|+|......
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KVVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TTSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hcCcEEEEEeccccCCHHH
Confidence 0 00122457888888854 2211111 22233333 2489999999999865332
Q ss_pred cH----HHHHHHHHcCCcEEE
Q 029077 135 KA----KQVTFHRKKNLQYYE 151 (199)
Q Consensus 135 ~~----~~~~~~~~~~~~~~~ 151 (199)
.. .........++.+|.
T Consensus 158 ~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 158 KSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCccccC
Confidence 22 122344556666554
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=4.7e-09 Score=80.77 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=71.5
Q ss_pred CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-H----HHHHHHc
Q 029077 71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKK 145 (199)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~----~~~~~~~ 145 (199)
.++.|+.....+...++++++|+|+++..+ .|...+.+...+.|+++|+||.|+.......+ . ...++..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 467788888888899999999999998763 34444445556899999999999976433221 1 2335566
Q ss_pred CC---cEEEeccCCCCChHHHHHHHHHHH
Q 029077 146 NL---QYYEISAKSNYNFEKPFLYLARKL 171 (199)
Q Consensus 146 ~~---~~~~~s~~~~~~v~~~~~~i~~~~ 171 (199)
+. .++.+||++|.|++++++.+.+..
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 66 689999999999999999887654
No 222
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.66 E-value=1.9e-08 Score=72.59 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=31.5
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|...+.
T Consensus 143 ~~~LSgGq--~QRv~iAral~~~p~llllDEPts~-----LD~~~~~ 182 (235)
T 3tif_A 143 PNQLSGGQ--QQRVAIARALANNPPIILADQPTWA-----LDSKTGE 182 (235)
T ss_dssp GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred hhhCCHHH--HHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence 45555543 3456699999999999999999999 9987653
No 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.65 E-value=3.8e-09 Score=77.93 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=31.3
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++|. +.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 141 ~~~LSgG--qkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~ 180 (275)
T 3gfo_A 141 THCLSFG--QKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVS 180 (275)
T ss_dssp GGGSCHH--HHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHH
T ss_pred cccCCHH--HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence 3445444 34456799999999999999999999 9987653
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3.4e-08 Score=73.22 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (199)
...++|+++|.+|+|||||+|+|.+... ....+..|++.....+..+ ..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVG---KELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEET---TTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence 4568999999999999999999775432 2333444555443333322 257899999964
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.62 E-value=1.7e-08 Score=74.06 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (199)
++++++|.+|+|||||+|+|..... ....++.|++.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 6999999999999999999775443 2334455555443333222 2578999999654
No 226
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.60 E-value=5.4e-08 Score=74.30 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=31.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|. +.-.-.|++++..+|+++++|||+.+ ||...+.
T Consensus 161 ~~~LSGG--qkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~ 200 (366)
T 3tui_C 161 PSNLSGG--QKQRVAIARALASNPKVLLCDQATSA-----LDPATTR 200 (366)
T ss_dssp TTTSCHH--HHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHH
Confidence 3455544 44456799999999999999999999 9987653
No 227
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.53 E-value=3.7e-08 Score=75.10 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
...++|. +.-.-.|++++..+|+++++|||+.+ +|...+
T Consensus 136 ~~~LSGG--q~QRValArAL~~~P~lLLLDEPts~-----LD~~~r 174 (359)
T 3fvq_A 136 PHELSGG--QQQRAALARALAPDPELILLDEPFSA-----LDEQLR 174 (359)
T ss_dssp GGGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence 3455554 44456799999999999999999999 998764
No 228
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.51 E-value=5.4e-08 Score=71.50 Aligned_cols=39 Identities=36% Similarity=0.407 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhC------CCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~------~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|...+ .-.|++++.. +|+++++|||+.+ +|...++
T Consensus 140 ~~LSgGq~Q--Rv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~ 184 (266)
T 4g1u_C 140 RVLSGGEQQ--RVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQ 184 (266)
T ss_dssp GGCCHHHHH--HHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHH
T ss_pred ccCCHHHHH--HHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHH
Confidence 445544334 4669999998 9999999999999 9987653
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.51 E-value=9.9e-08 Score=68.37 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 138 ~~~LSgGq~q--rv~laral~~~p~lllLDEPt~~-----LD~~~~~ 177 (224)
T 2pcj_A 138 PYELSGGEQQ--RVAIARALANEPILLFADEPTGN-----LDSANTK 177 (224)
T ss_dssp GGGSCHHHHH--HHHHHHHTTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHH
Confidence 3445544333 46699999999999999999999 9987653
No 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.51 E-value=4e-07 Score=64.67 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 138 qkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~ 170 (214)
T 1sgw_A 138 TIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKH 170 (214)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHH
Confidence 44456799999999999999999999 9987653
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=1.8e-07 Score=73.17 Aligned_cols=140 Identities=18% Similarity=0.084 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc-----CCCC-----Ccc-----------ccceeEEEeeEEEEe-------------
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKY-----------EPTIGVEVHPLDFFT------------- 57 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~-----~~~~-----~~~-----------~~~~~~~~~~~~~~~------------- 57 (199)
+...|+++|++||||||++..|.. +.-. ..+ ....+.+........
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988652 1100 000 001122111110000
Q ss_pred cCcEEEEEEEeCCCcccccccc-c-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077 58 NCGKIRFYCWDTAGQEKFGGLR-D-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (199)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~-~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~ 131 (199)
....+.+.++||+|........ . .....+|.+++|+|++.... .......+... -.+..+|.||.|...
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence 0123788999999954322111 1 11235789999999886532 22233333322 234568899999875
Q ss_pred ccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
..- .........+.++.+++. |+++
T Consensus 254 ~gG--~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 254 KGG--GALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp SHH--HHHHHHHTTCCCEEEEEC--SSST
T ss_pred ccc--HHHHHHHHHCCCEEEEEc--CCCh
Confidence 432 233445567888777765 6655
No 232
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.49 E-value=3.5e-07 Score=70.23 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=30.9
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+.++|. +.-.-.|++++..+|+++++|||+.+ ||...+
T Consensus 131 p~~LSGG--qrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~ 169 (381)
T 3rlf_A 131 PKALSGG--QRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALR 169 (381)
T ss_dssp GGGSCHH--HHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHH
T ss_pred hhHCCHH--HHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHH
Confidence 3455544 44456799999999999999999999 998754
No 233
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.48 E-value=4.3e-07 Score=69.72 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|..-+. -.|++++..+|+++++|||+.+ ||....+
T Consensus 139 ~~~LSGGq~QR--valArAL~~~P~lLLLDEP~s~-----LD~~~r~ 178 (372)
T 1v43_A 139 PAQLSGGQRQR--VAVARAIVVEPDVLLMDEPLSN-----LDAKLRV 178 (372)
T ss_dssp TTTCCSSCHHH--HHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred hhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence 45667665555 5699999999999999999999 9987653
No 234
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.47 E-value=2.3e-07 Score=68.03 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=30.7
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.++|... -.-.|++++..+|+++++|||+.+ +|...++
T Consensus 158 ~~LSgGqk--QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 196 (263)
T 2olj_A 158 DSLSGGQA--QRVAIARALAMEPKIMLFDEPTSA-----LDPEMVG 196 (263)
T ss_dssp GGSCHHHH--HHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred hhCCHHHH--HHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHH
Confidence 44554433 446699999999999999999999 9987653
No 235
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.46 E-value=5.4e-07 Score=69.22 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ ||....
T Consensus 137 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r 175 (372)
T 1g29_1 137 PRELSGGQ--RQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLR 175 (372)
T ss_dssp GGGSCHHH--HHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHH
T ss_pred cccCCHHH--HHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHH
Confidence 35555544 3456799999999999999999999 998765
No 236
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.46 E-value=1.3e-07 Score=69.88 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|... -.-.|++++..+|+++++|||+.+ +|...++
T Consensus 159 ~~~LSgGqk--qRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~ 198 (279)
T 2ihy_A 159 IGYLSTGEK--QRVMIARALMGQPQVLILDEPAAG-----LDFIARE 198 (279)
T ss_dssp GGGSCHHHH--HHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHH
T ss_pred hhhCCHHHH--HHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHH
Confidence 344554433 446699999999999999999999 9987653
No 237
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.46 E-value=3.9e-07 Score=66.48 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=31.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 126 ~~~LSgGq~q--rv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 165 (253)
T 2nq2_C 126 FTSLSGGQRQ--LILIARAIASECKLILLDEPTSA-----LDLANQD 165 (253)
T ss_dssp GGGSCHHHHH--HHHHHHHHHTTCSEEEESSSSTT-----SCHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence 3445544444 46699999999999999999999 9987653
No 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.44 E-value=2.8e-07 Score=66.68 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=31.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 124 ~~~LSgGqkq--Rv~lAral~~~p~lllLDEPts~-----LD~~~~~ 163 (240)
T 2onk_A 124 PARLSGGERQ--RVALARALVIQPRLLLLDEPLSA-----VDLKTKG 163 (240)
T ss_dssp GGGSCHHHHH--HHHHHHHHTTCCSSBEEESTTSS-----CCHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence 3455554444 45699999999999999999999 9987653
No 239
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.42 E-value=2.6e-07 Score=67.77 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 151 ~~~LSgGq~q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 190 (262)
T 1b0u_A 151 PVHLSGGQQQ--RVSIARALAMEPDVLLFDEPTSA-----LDPELVG 190 (262)
T ss_dssp GGGSCHHHHH--HHHHHHHHHTCCSEEEEESTTTT-----SCHHHHH
T ss_pred cccCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHH
Confidence 3445544334 46699999999999999999999 9987653
No 240
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.39 E-value=8.9e-07 Score=67.49 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=31.3
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ ||....+
T Consensus 143 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~ 182 (355)
T 1z47_A 143 PHELSGGQ--QQRVALARALAPRPQVLLFDEPFAA-----IDTQIRR 182 (355)
T ss_dssp GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHH
T ss_pred cccCCHHH--HHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence 34555543 3456799999999999999999999 9987653
No 241
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.39 E-value=7.5e-07 Score=65.03 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|... -.-.|++++..+|+++++|||+.+ +|...++
T Consensus 144 ~~~LSgGq~--qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 183 (256)
T 1vpl_A 144 VSTYSKGMV--RKLLIARALMVNPRLAILDEPTSG-----LDVLNAR 183 (256)
T ss_dssp GGGCCHHHH--HHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred hhhCCHHHH--HHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHH
Confidence 344554433 446699999999999999999999 9987653
No 242
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.38 E-value=4.4e-07 Score=65.66 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=31.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 137 ~~~LSgGq~q--rv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 176 (240)
T 1ji0_A 137 GGTLSGGEQQ--MLAIGRALMSRPKLLMMDEPSLG-----LAPILVS 176 (240)
T ss_dssp SSSSCHHHHH--HHHHHHHHTTCCSEEEEECTTTT-----CCHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHHcCCCEEEEcCCccc-----CCHHHHH
Confidence 3445544334 46699999999999999999999 9987653
No 243
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.38 E-value=8.5e-07 Score=67.81 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|....
T Consensus 131 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r 169 (362)
T 2it1_A 131 PWQLSGGQ--QQRVAIARALVKEPEVLLLDEPLSN-----LDALLR 169 (362)
T ss_dssp GGGSCHHH--HHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHH
T ss_pred hhhCCHHH--HHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence 34555543 4456799999999999999999999 998765
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=4.8e-07 Score=70.69 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCccc--ccc-cc---cc--cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077 61 KIRFYCWDTAGQEK--FGG-LR---DG--YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132 (199)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~ 132 (199)
.+.+.++||+|... ... .. .. .....+.+++|+|+..... .......+... -.+..+|.||.|....
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK 253 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence 56788999999543 111 11 11 1225689999999986533 22233333332 2456788999998743
Q ss_pred cccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 133 QVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
. ..........+.++.+++. |+++
T Consensus 254 ~--G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 254 G--GGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence 2 2234555567888877775 6655
No 245
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.38 E-value=7.3e-07 Score=68.11 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.++|. +.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 132 ~~LSgG--q~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r 169 (359)
T 2yyz_A 132 TQLSGG--QQQRVALARALVKQPKVLLFDEPLSN-----LDANLR 169 (359)
T ss_dssp GGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHH
T ss_pred hhCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence 455554 34456799999999999999999999 998765
No 246
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.36 E-value=1.1e-06 Score=68.94 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=50.3
Q ss_pred cEEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCC-c-EEEEEeCCCCCC
Q 029077 60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN 131 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~-p-~iiv~~K~D~~~ 131 (199)
..+.+.++||+|...... ... ..+..+|.+++|+|++... ........+ .... | ..+|.||.|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence 346789999999654211 111 1123689999999987653 222222222 2345 6 778899999864
Q ss_pred ccccHHHHHHHHHcCCcEEEec
Q 029077 132 RQVKAKQVTFHRKKNLQYYEIS 153 (199)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.. ..........+.++.+++
T Consensus 253 ~~--g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG--GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT--HHHHHHHHHSSCCEEEEC
T ss_pred ch--HHHHHHHHHHCCCEEEee
Confidence 32 223345566677765553
No 247
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.35 E-value=7.9e-07 Score=65.00 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=31.1
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 151 ~~~LSgGq--kQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~ 190 (257)
T 1g6h_A 151 AGELSGGQ--MKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAH 190 (257)
T ss_dssp GGGSCHHH--HHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHH
T ss_pred chhCCHHH--HHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence 34455443 3446699999999999999999999 9987653
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.35 E-value=3.8e-07 Score=66.87 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 126 ~~~LSgGq--kqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 165 (263)
T 2pjz_A 126 LYKLSAGQ--SVLVRTSLALASQPEIVGLDEPFEN-----VDAARRH 165 (263)
T ss_dssp GGGSCHHH--HHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHH
T ss_pred hhhCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHH
Confidence 34455443 3446699999999999999999999 9987653
No 249
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.33 E-value=3.1e-07 Score=67.31 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=62.3
Q ss_pred CCCccc-ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC
Q 029077 69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 147 (199)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~ 147 (199)
.||+.. ........+.++|+++.|+|++++.+..... +. .. ++|.++|+||+|+.+........++.+..+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~ 76 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGK 76 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence 355432 1223455678999999999999887654311 01 11 8899999999999875433344455666678
Q ss_pred cEEEeccCCCCChHHHHHHHHH
Q 029077 148 QYYEISAKSNYNFEKPFLYLAR 169 (199)
Q Consensus 148 ~~~~~s~~~~~~v~~~~~~i~~ 169 (199)
++ .+|+.+|.|+++++..+..
T Consensus 77 ~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 77 RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp CE-EECCTTSCHHHHHHHHCCC
T ss_pred eE-EEECCCCcCHHHHHHHHHH
Confidence 88 9999999999988766544
No 250
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.32 E-value=2.6e-07 Score=70.31 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=30.9
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|....
T Consensus 125 ~~~LSgGq--~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~ 163 (348)
T 3d31_A 125 PLTLSGGE--QQRVALARALVTNPKILLLDEPLSA-----LDPRTQ 163 (348)
T ss_dssp GGGSCHHH--HHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHH
T ss_pred hhhCCHHH--HHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence 34555543 3456799999999999999999999 998764
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.32 E-value=9.2e-08 Score=70.31 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.8
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 137 ~~LSgGq~q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 175 (266)
T 2yz2_A 137 FFLSGGEKR--RVAIASVIVHEPDILILDEPLVG-----LDREGKT 175 (266)
T ss_dssp GGSCHHHHH--HHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred hhCCHHHHH--HHHHHHHHHcCCCEEEEcCcccc-----CCHHHHH
Confidence 455554444 46699999999999999999999 9987653
No 252
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.32 E-value=1.1e-06 Score=67.14 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=30.9
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.+.++|.. .-.-.|++++..+|+++++|||+.+ +|....
T Consensus 138 ~~~LSGGq--~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r 176 (353)
T 1oxx_K 138 PRELSGAQ--QQRVALARALVKDPSLLLLDEPFSN-----LDARMR 176 (353)
T ss_dssp GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGH
T ss_pred hhhCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----CCHHHH
Confidence 34555543 3456799999999999999999999 998764
No 253
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.29 E-value=8.4e-07 Score=71.88 Aligned_cols=65 Identities=15% Similarity=0.016 Sum_probs=39.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEE--Ee-cCcEEEEEEEeCCCccc
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK 74 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~ 74 (199)
..+.++|+|+|.+|+|||||+|+|++.... .....+.+.+...... .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456789999999999999999998765421 1111111222111111 11 12345788999999654
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.21 E-value=1e-05 Score=58.41 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|...+
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~ 163 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVG 163 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHH
Confidence 33456799999999999999999999 998764
No 255
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.20 E-value=9.9e-07 Score=64.20 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 144 LSgGqkQ--rv~iAraL~~~p~lllLDEPts~-----LD~~~~~ 180 (250)
T 2d2e_A 144 FSGGEKK--RNEILQLLVLEPTYAVLDETDSG-----LDIDALK 180 (250)
T ss_dssp ----HHH--HHHHHHHHHHCCSEEEEECGGGT-----TCHHHHH
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHH
Confidence 5554444 45699999999999999999999 9987653
No 256
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.20 E-value=4.3e-06 Score=62.34 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=56.1
Q ss_pred cEEEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCC
Q 029077 60 GKIRFYCWDTAGQEK--FGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK 130 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~ 130 (199)
..+.+.++||||... ... ... .....+|.+++|+|+... .........+.. ..+ ..+|.||.|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence 356789999999755 211 111 123468999999998643 222222333322 456 66888999976
Q ss_pred CccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 162 (199)
... ..........+.++.+++ .|.++++
T Consensus 253 ~~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 AKG--GGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp TTH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred cch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 432 223456677788877766 4555543
No 257
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.19 E-value=2.6e-07 Score=69.09 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|.++++|||+.+ +|....
T Consensus 195 qrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~ 226 (306)
T 3nh6_A 195 EKQRVAIARTILKAPGIILLDEATSA-----LDTSNE 226 (306)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHH
Confidence 44557799999999999999999999 998764
No 258
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.19 E-value=6.1e-06 Score=62.36 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=51.5
Q ss_pred EEEEEEeCCCcccccccc-cc-----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077 62 IRFYCWDTAGQEKFGGLR-DG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK 135 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~ 135 (199)
+.+.+.|++|........ .. ..-..|-.+++.|..... .+......+... .....++.||.|.... .
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~ 284 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--G 284 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--C
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--h
Confidence 345678999864422221 11 112468888999976543 333333333322 2233677899997432 3
Q ss_pred HHHHHHHHHcCCcEEEeccCCCCChH
Q 029077 136 AKQVTFHRKKNLQYYEISAKSNYNFE 161 (199)
Q Consensus 136 ~~~~~~~~~~~~~~~~~s~~~~~~v~ 161 (199)
..........+.++.+++ +|.+++
T Consensus 285 G~~l~~~~~~~~pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 285 GAALSISYVIDAPILFVG--VGQGYD 308 (328)
T ss_dssp HHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred hHHHHHHHHHCCCEEEEe--CCCCcc
Confidence 334566677788877776 566653
No 259
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=5.8e-06 Score=67.65 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~ 36 (199)
.|+|+|++|||||||++.+.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 3999999999999999986643
No 260
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=2e-06 Score=64.27 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=58.8
Q ss_pred cccccccccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcCCcEE
Q 029077 76 GGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYY 150 (199)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~~~~~ 150 (199)
..+.+..+.++|.+++|+|+.++.. ...+..++.... ..++|.++|+||+|+.+... ..+........+.+++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 3444556889999999999987653 233333332222 24889999999999987533 2334456666788999
Q ss_pred EeccCCCCChHH
Q 029077 151 EISAKSNYNFEK 162 (199)
Q Consensus 151 ~~s~~~~~~v~~ 162 (199)
.+|+.+|.|+++
T Consensus 155 ~~sa~~~~g~~~ 166 (307)
T 1t9h_A 155 LTSSKDQDSLAD 166 (307)
T ss_dssp ECCHHHHTTCTT
T ss_pred EEecCCCCCHHH
Confidence 999988887654
No 261
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.12 E-value=4.4e-06 Score=68.06 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|....+
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~-----LD~~~~~ 517 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSA-----LDTESER 517 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence 34456799999999999999999999 9987653
No 262
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.08 E-value=1.3e-07 Score=75.11 Aligned_cols=102 Identities=16% Similarity=-0.027 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccc--------c
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D 80 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~ 80 (199)
...++|+++|.+||||||+.++|..... ....++.+...........+......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999998653211 11112222111111111111223345788887632 22222 3
Q ss_pred ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh
Q 029077 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114 (199)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~ 114 (199)
.++....+.++|+|.++. .......|...+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 345556788899999987 444455666655543
No 263
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.06 E-value=2.1e-06 Score=70.03 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=32.4
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++.++|...+. -.|++++..+|+++++|||+.+ +|..++.
T Consensus 469 ~~~LSGGe~QR--v~iAraL~~~p~lLlLDEPt~~-----LD~~~~~ 508 (607)
T 3bk7_A 469 VEDLSGGELQR--VAIAATLLRDADIYLLDEPSAY-----LDVEQRL 508 (607)
T ss_dssp GGGCCHHHHHH--HHHHHHHTSCCSEEEEECTTTT-----CCHHHHH
T ss_pred hhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCccC-----CCHHHHH
Confidence 45666655444 5699999999999999999999 9998754
No 264
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.03 E-value=2.3e-05 Score=59.76 Aligned_cols=81 Identities=9% Similarity=0.030 Sum_probs=54.6
Q ss_pred cccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCCcEEEeccCCC
Q 029077 82 YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN 157 (199)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~ 157 (199)
...++|.+++|.+. ++.. ...+..++..... .++|.++|+||+|+.+... ..+........|++++.+|+.+|
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 46889999988664 4432 2333344332222 3788899999999986543 22234555667889999999999
Q ss_pred CChHHHHH
Q 029077 158 YNFEKPFL 165 (199)
Q Consensus 158 ~~v~~~~~ 165 (199)
.|++++..
T Consensus 204 ~gl~~L~~ 211 (358)
T 2rcn_A 204 DGLKPLEE 211 (358)
T ss_dssp BTHHHHHH
T ss_pred cCHHHHHH
Confidence 99988654
No 265
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.02 E-value=2.6e-06 Score=68.57 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.0
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|. +...-.|++++..+|+++++|||+.+ ||..++
T Consensus 136 ~~~LSgG--e~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~ 174 (538)
T 3ozx_A 136 ANILSGG--GLQRLLVAASLLREADVYIFDQPSSY-----LDVRER 174 (538)
T ss_dssp GGGCCHH--HHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence 4455544 34456699999999999999999999 998765
No 266
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.99 E-value=4.4e-06 Score=67.27 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=32.4
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+..++|...+. -+|++++..+|+++++|||+.+ +|..++.
T Consensus 383 ~~~LSGGq~QR--v~iAraL~~~p~lLlLDEPT~g-----LD~~~~~ 422 (538)
T 3ozx_A 383 VNDLSGGELQK--LYIAATLAKEADLYVLDQPSSY-----LDVEERY 422 (538)
T ss_dssp GGGCCHHHHHH--HHHHHHHHSCCSEEEEESTTTT-----CCHHHHH
T ss_pred hhhCCHHHHHH--HHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence 45666655554 6699999999999999999999 9987653
No 267
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.96 E-value=5.1e-06 Score=67.78 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=31.8
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|.+.+. -.|++++..+|+++++|||+.+ +|..++
T Consensus 465 ~~~LSGGqkQR--v~iAraL~~~p~lLlLDEPT~g-----LD~~~~ 503 (608)
T 3j16_B 465 VQHLSGGELQR--VAIVLALGIPADIYLIDEPSAY-----LDSEQR 503 (608)
T ss_dssp SSSCCHHHHHH--HHHHHHTTSCCSEEEECCTTTT-----CCHHHH
T ss_pred hhhCCHHHHHH--HHHHHHHHhCCCEEEEECCCCC-----CCHHHH
Confidence 45666655554 5699999999999999999999 998765
No 268
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.89 E-value=3.1e-06 Score=68.21 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=32.3
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+..++|.+.+. -.|++++..+|+++++|||+.+ +|..+++
T Consensus 399 ~~~LSGGe~qr--v~lAraL~~~p~lLlLDEPt~~-----LD~~~~~ 438 (538)
T 1yqt_A 399 VNELSGGELQR--VAIAATLLRDADIYLLDEPSAY-----LDVEQRL 438 (538)
T ss_dssp GGGCCHHHHHH--HHHHHHHTSCCSEEEEECTTTT-----CCHHHHH
T ss_pred hhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence 45566655454 5699999999999999999999 9988754
No 269
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=8.1e-06 Score=56.25 Aligned_cols=21 Identities=48% Similarity=0.868 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
.+++++|++|||||||++.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999865
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.86 E-value=3e-06 Score=58.74 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029077 16 LVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~ 36 (199)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999997643
No 271
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.86 E-value=7.6e-06 Score=66.87 Aligned_cols=32 Identities=13% Similarity=0.429 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~-----LD~~~~ 527 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSN-----VDTKTE 527 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHH
Confidence 44557799999999999999999999 998764
No 272
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.85 E-value=1.5e-05 Score=64.95 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~-----LD~~~~ 515 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSS-----VDPITE 515 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence 45567799999999999999999999 998764
No 273
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.81 E-value=1.7e-05 Score=70.36 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
+.-.-.|+|++..+++++.+|||+.+ +|.+.
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSa-----LD~~t 1252 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSA-----LDTES 1252 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHH
Confidence 45567899999999999999999999 98765
No 274
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.80 E-value=3e-05 Score=63.08 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 482 q~Qrv~lAral~~~p~illlDEpts~-----LD~~~~ 513 (578)
T 4a82_A 482 QKQRLSIARIFLNNPPILILDEATSA-----LDLESE 513 (578)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence 45567799999999999999999999 998754
No 275
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.79 E-value=2.4e-05 Score=64.77 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=31.2
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCC--CceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~--~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
++.++|. +.-.-.|++++..+|+ ++++|||+.+ +|+..+.
T Consensus 200 ~~~LSGG--e~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~ 241 (670)
T 3ux8_A 200 AGTLSGG--EAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDND 241 (670)
T ss_dssp GGGSCHH--HHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHH
T ss_pred cccCCHH--HHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHH
Confidence 4556554 4445669999999988 9999999999 9987653
No 276
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.72 E-value=5.8e-05 Score=59.24 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhcC------------------CCCC---ccccceeEEEeeEEE--Ee-cCcEEEEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHLTG------------------EFEK---KYEPTIGVEVHPLDF--FT-NCGKIRFY 65 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~~~------------------~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~ 65 (199)
..+..-|+|+|++++|||||+|.|++. .+.. ....|.|+-...... .. ++....+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 456678999999999999999998742 1211 112234432222111 11 34468899
Q ss_pred EEeCCCccc
Q 029077 66 CWDTAGQEK 74 (199)
Q Consensus 66 l~D~~g~~~ 74 (199)
+.||+|...
T Consensus 144 llDTeG~~~ 152 (447)
T 3q5d_A 144 LMDTQGTFD 152 (447)
T ss_dssp EEEEECCCS
T ss_pred EEcCCcccc
Confidence 999999643
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.70 E-value=2e-05 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
-.++++|++|||||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998664
No 278
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=2.2e-05 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
-.++|+|++|||||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998653
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.68 E-value=2e-05 Score=53.87 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077 158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA 195 (199)
Q Consensus 158 ~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~ 195 (199)
.+.+.-+-.|++++..+|.++++|||+.. +|..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~ 117 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQER 117 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHH
Confidence 34456667899999999999999999998 8876
No 280
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.68 E-value=3.6e-05 Score=68.05 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~ 1207 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATSA-----LDTESE 1207 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence 44556799999999999999999999 998764
No 281
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=1.5e-05 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+.--|+|+|++|||||||++.|+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 444688999999999999999764
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=2.7e-05 Score=53.92 Aligned_cols=20 Identities=45% Similarity=0.813 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
++++|++|||||||++.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998663
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.64 E-value=2.6e-05 Score=54.92 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++++|++|||||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998653
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.63 E-value=7.8e-05 Score=54.06 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 150 q~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~ 182 (247)
T 2ff7_A 150 QRQRIAIARALVNNPKILIFDEATSA-----LDYESEH 182 (247)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence 44456799999999999999999999 9987653
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=2.8e-05 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++++|++|||||||++.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998654
No 286
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.61 E-value=0.00016 Score=64.12 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+...-.|++++..+|.++.+|||+.+ +|....
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~-----LD~~~~ 562 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSA-----LDTESE 562 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHH
Confidence 55667899999999999999999999 997653
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.60 E-value=3.3e-05 Score=55.00 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++|+|++|||||||++.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998664
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=3.5e-05 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++++|++|||||||++.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998664
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.58 E-value=3.6e-05 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
-.|+++|++|||||||++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998653
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=9.9e-05 Score=54.27 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.++|. +.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 155 ~~LSgG--q~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 193 (271)
T 2ixe_A 155 NQLSGG--QRQAVALARALIRKPRLLILDNATSA-----LDAGNQL 193 (271)
T ss_dssp TTSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHH
Confidence 344443 33446699999999999999999999 9987653
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.58 E-value=3.6e-05 Score=54.74 Aligned_cols=21 Identities=48% Similarity=0.770 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++|+|++|||||||++.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999998664
No 292
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.57 E-value=4.9e-05 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.+...|+|+|++|||||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999855
No 293
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.55 E-value=8.9e-05 Score=65.79 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA 196 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~ 196 (199)
+...-.|+|+++.++.++.+|||+.+ +|...
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tSa-----LD~~t 589 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATSA-----LDAES 589 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTT
T ss_pred HHHHHHHHHHHccCCCEEEEeccccc-----CCHHH
Confidence 56678899999999999999999999 88654
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.55 E-value=6.8e-05 Score=53.72 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 135 qkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~ 167 (229)
T 2pze_A 135 QRARISLARAVYKDADLYLLDSPFGY-----LDVLTEK 167 (229)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHH
Confidence 44456799999999999999999999 9987653
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.55 E-value=0.00053 Score=53.74 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCcccccc-cccc-----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCCCCcc
Q 029077 61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ 133 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~~~~~ 133 (199)
.+.+.++||||...... .... ....++.+++|+|+.... ........+.. ..++ -+|.||.|.....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence 56889999999644321 1111 134688999999987543 22222333322 3443 3678999986443
Q ss_pred ccHHHHHHHHHcCCcEEE
Q 029077 134 VKAKQVTFHRKKNLQYYE 151 (199)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~ 151 (199)
..........+.++.+
T Consensus 257 --g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 257 --GAALSIRHITGKPIKF 272 (433)
T ss_dssp --THHHHHHHHHCCCEEE
T ss_pred --HHHHHHHHHHCCCeEE
Confidence 2233444445555333
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.53 E-value=5.8e-05 Score=54.59 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999865
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.51 E-value=7.2e-05 Score=54.09 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|...+
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~-----LD~~~~ 175 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATAS-----LDSESE 175 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence 44456799999999999999999999 987654
No 298
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=2.9e-05 Score=58.03 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
-.++++|++|||||||+|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999999653
No 299
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=6e-05 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~ 36 (199)
--|+++|++|||||||++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45889999999999999997643
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.45 E-value=9.9e-05 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=22.2
Q ss_pred ccCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 8 TVDYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 8 ~~~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
......+.|+|+|.+||||||+.+.|.
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344566789999999999999999865
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=5.9e-05 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++++|++|||||||++.+.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998653
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.45 E-value=8.1e-05 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
...|+++|++|||||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999997653
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.45 E-value=7.5e-05 Score=54.19 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=30.8
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCC-------CceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~-------~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++|...+ .-.|++++..+|+ ++++|||+.+ +|...++
T Consensus 124 ~~~LSgGq~q--rv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~ 170 (249)
T 2qi9_C 124 TNQLSGGEWQ--RVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQS 170 (249)
T ss_dssp GGGCCHHHHH--HHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHH
T ss_pred hhhCCHHHHH--HHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHH
Confidence 3445544334 4569999999999 9999999999 9987654
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.44 E-value=7.4e-05 Score=51.66 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.++++|++|||||||++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999999865
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.43 E-value=6.9e-05 Score=52.06 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
+++++|++|||||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998653
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.42 E-value=8.7e-05 Score=54.44 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|...++
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~ 201 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSG-----LDIDALK 201 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence 34456799999999999999999999 9987653
No 307
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.41 E-value=8.5e-05 Score=54.26 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|....+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 192 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEY 192 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence 44456799999999999999999999 9987653
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=8.9e-05 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|+++|++||||||+++.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999865
No 309
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.38 E-value=0.00012 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~~ 36 (199)
..|+++|++||||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999986643
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=0.00011 Score=49.85 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 029077 14 FKLVIVGDGGTGKTTFVKRH 33 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l 33 (199)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999986
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.37 E-value=0.0001 Score=51.52 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.|+|+|++||||||+++.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.37 E-value=0.0001 Score=51.68 Aligned_cols=22 Identities=41% Similarity=0.677 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
.-|+|+|++|||||||++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999998763
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.35 E-value=0.00012 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+|+|.+||||||+++.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999865
No 314
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.35 E-value=0.00012 Score=55.92 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~ 36 (199)
.++++|++|||||||+|.|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999997643
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.35 E-value=0.00013 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+|.|.+||||||+++.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 316
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.35 E-value=0.0001 Score=53.85 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++|+|++|||||||++.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 468999999999999999865
No 317
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.35 E-value=0.00011 Score=52.97 Aligned_cols=20 Identities=40% Similarity=0.782 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999865
No 318
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.34 E-value=0.00013 Score=54.06 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=30.4
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
..++|...+ .-.|++++..+|+++++|||+.+ +|...++
T Consensus 158 ~~LSgGq~Q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~ 196 (290)
T 2bbs_A 158 ITLSGGQRA--RISLARAVYKDADLYLLDSPFGY-----LDVLTEK 196 (290)
T ss_dssp CCCCHHHHH--HHHHHHHHHSCCSEEEEESTTTT-----CCHHHHH
T ss_pred CcCCHHHHH--HHHHHHHHHCCCCEEEEECCccc-----CCHHHHH
Confidence 344444333 46699999999999999999999 9987653
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.34 E-value=0.00011 Score=54.77 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
=.++|+|++|||||||++.+.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999865
No 320
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.33 E-value=0.00015 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998653
No 321
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00013 Score=49.37 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+|.|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|++.|.+||||||+.+.|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999865
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.00019 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
--.|+++|++||||||+++.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.32 E-value=0.00013 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 325
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.30 E-value=0.0024 Score=44.86 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=53.9
Q ss_pred cEEEEEEEeCCCc-ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH
Q 029077 60 GKIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK 137 (199)
Q Consensus 60 ~~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~ 137 (199)
..+.+.++|+|+. .. ......+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+.|... .. ..+
T Consensus 66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~ 140 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDE 140 (209)
T ss_dssp GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHH
T ss_pred hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHH
Confidence 3467889999875 32 23445667899998888764 445555666666665532 566888999998765 22 233
Q ss_pred HHHHHHHcCCcEE
Q 029077 138 QVTFHRKKNLQYY 150 (199)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (199)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 3344444555443
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.30 E-value=7.6e-05 Score=53.42 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-++|+|++|||||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999866
No 327
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.30 E-value=0.00017 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999998764
No 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.30 E-value=0.00015 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|+|+|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.30 E-value=0.00015 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
.+|+|+|.+||||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998654
No 330
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.29 E-value=8.4e-05 Score=51.98 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCccccHH
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK 137 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~ 137 (199)
.+.+.++|+|+.. .......+..+|.++++...+... ..+......+... .++.++.+|.|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 4788999999754 334455667799999998876543 4455555555443 345677889999986543 2233
Q ss_pred HHHHHHHcCCcEE
Q 029077 138 QVTFHRKKNLQYY 150 (199)
Q Consensus 138 ~~~~~~~~~~~~~ 150 (199)
..+..+..+.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 3444444555544
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.29 E-value=0.00023 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.6
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
..++...|+++|.+||||||+++.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 33456789999999999999999865
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.9
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHhc
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~~ 35 (199)
++++...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHH
Confidence 345568899999999999999998664
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.28 E-value=0.00019 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
.+|+++|++||||||+++.|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999765
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.28 E-value=0.00018 Score=53.95 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
......|+|+|++|||||||++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHH
Confidence 3456789999999999999999855
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.27 E-value=0.00019 Score=51.86 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+...|+|+|++|||||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998653
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00021 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|+|.|.+||||||+++.|.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999999865
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00026 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
....+-|+|+|++|||||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4566889999999999999998754
No 338
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.00018 Score=50.28 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.|+++|++||||||+.+.|.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 379999999999999999865
No 339
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.26 E-value=0.00016 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+.-.|+++|++||||||+++.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999865
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.25 E-value=0.00015 Score=51.49 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++++|++|||||||++.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998764
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.24 E-value=0.00019 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998653
No 342
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00023 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+++|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 343
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.24 E-value=0.00016 Score=53.95 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++++|++|||||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999976
No 344
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.23 E-value=0.00014 Score=49.82 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++++|++|+|||||++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999865
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00025 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+..+|+++|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998653
No 346
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.22 E-value=0.00021 Score=50.34 Aligned_cols=21 Identities=43% Similarity=0.552 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|+++|+|||||+|...+|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 347
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.22 E-value=0.00015 Score=55.63 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-+++|+|++|||||||++.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999855
No 348
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.21 E-value=0.00025 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|++.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999865
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.21 E-value=0.00026 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+.++|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999999865
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.20 E-value=0.00021 Score=48.90 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
..++++|++|||||||+++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3688999999999999999763
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.20 E-value=0.00022 Score=49.65 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 68999999999999999865
No 352
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00024 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+++|++||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999865
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.19 E-value=0.00037 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.....|+|.|.+||||||+.+.|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 334579999999999999999865
No 354
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.19 E-value=0.00018 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++++|++|||||||+|.+.+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 678999999999999998653
No 355
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.00026 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
+....|+++|.+||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 344579999999999999999865
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.17 E-value=0.00011 Score=50.27 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.16 E-value=0.00032 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999865
No 358
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.16 E-value=0.00024 Score=50.16 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|+|.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999865
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.16 E-value=0.00026 Score=48.79 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+|.|.+||||||+++.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 360
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.15 E-value=0.00037 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~ 35 (199)
.+...|+++|++||||||+++.|..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998653
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.14 E-value=0.00031 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
..+|+|+|.+||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999865
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.13 E-value=0.00037 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|+|.|.+||||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999999865
No 363
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00035 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...-|++.|++||||||+++.|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999975
No 364
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.12 E-value=0.00041 Score=51.49 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
..+...|+|.|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998754
No 365
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.11 E-value=0.00057 Score=55.69 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|++++..+|+++++|||+.+ +|....+
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~-----LD~~~~~ 517 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSA-----LDTESER 517 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHH
Confidence 44456799999999999999999999 9987653
No 366
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.10 E-value=0.00027 Score=53.95 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.|+|+|++|||||||++.++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999865
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.10 E-value=0.00026 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
+|+++|++||||||+.+.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999864
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.10 E-value=0.00037 Score=52.14 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~ 35 (199)
.....|+|+|++|||||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998653
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.09 E-value=0.00038 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
...|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998653
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.09 E-value=0.00034 Score=47.23 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|++.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999865
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00038 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|++.|.+||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999999865
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.08 E-value=0.00028 Score=52.74 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=44.7
Q ss_pred EEEEEeCCCccccccc-c-----------cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077 63 RFYCWDTAGQEKFGGL-R-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (199)
Q Consensus 63 ~~~l~D~~g~~~~~~~-~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~ 130 (199)
.+.+.|++|....... . +......+.++++.|...... +......+.... +. .+++.||.|..
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTSS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCccc
Confidence 4567899885432111 0 122345777888999876543 222233332221 22 45678998865
Q ss_pred CccccHHHHHHHHHcCCcEEEec
Q 029077 131 NRQVKAKQVTFHRKKNLQYYEIS 153 (199)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~s 153 (199)
.. ...........+.++.++.
T Consensus 261 a~--gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 261 AK--GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp CC--CTTHHHHHHHHCCCEEEEE
T ss_pred cc--ccHHHHHHHHHCCCeEEEe
Confidence 32 2233455556677766654
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.08 E-value=0.00028 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
.-.++++|++||||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999999998653
No 374
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.08 E-value=0.00022 Score=47.46 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++++|++|+|||||++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999865
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.00034 Score=49.83 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|+|+|.+||||||+++.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999865
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.07 E-value=0.00041 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
....|+++|++||||||+++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999865
No 377
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.00029 Score=54.43 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ ||...+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~ 191 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTY 191 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence 44567799999999999999999999 987654
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.05 E-value=0.00031 Score=51.70 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
++++|++|+|||||++.+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999998653
No 379
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.05 E-value=0.00041 Score=50.29 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~ 35 (199)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998653
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.04 E-value=0.00035 Score=47.86 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-.+|+|++|||||||++.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999864
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.03 E-value=0.0004 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
+.|+|.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999865
No 382
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.03 E-value=0.00061 Score=55.67 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++..+|+++++|||+.+ +|....
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~-----LD~~~~ 519 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSA-----LDAENE 519 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSS-----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccC-----CCHHHH
Confidence 44456799999999999999999999 998764
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.00037 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00027 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=15.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999865
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.03 E-value=0.00032 Score=53.03 Aligned_cols=20 Identities=35% Similarity=0.818 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.++++|++|||||||++.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999855
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.02 E-value=0.00042 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
+..+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999864
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.01 E-value=0.00034 Score=53.57 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++|+|++|||||||++.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999865
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.0005 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+|.|.+||||||+++.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999865
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.99 E-value=0.00084 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
...+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999865
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.99 E-value=0.00055 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
...+|+|+|.+||||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999865
No 391
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00032 Score=55.46 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
+++|+|++|||||||++.+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998653
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.98 E-value=0.00055 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=20.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.+-.-|+|.|+.||||||+++.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999999754
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.98 E-value=0.00041 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.|+|+|++||||||+++.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999866
No 394
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00043 Score=50.27 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-|+|+|++|||||||.+.|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999865
No 395
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.96 E-value=0.0086 Score=43.54 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D 128 (199)
.+.+.++|+|+.. .......+..+|.+|++...+. .+...+......+.....+.++.+|.|+.+
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 4678899998743 2334455667999999998753 455556666666666555678888999984
No 396
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.96 E-value=0.00051 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
..++++|++|||||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998763
No 397
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00049 Score=47.46 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|++.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.96 E-value=0.00062 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998653
No 399
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.95 E-value=0.00047 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
++++|++|+|||||++.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998653
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.95 E-value=0.00041 Score=54.13 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
-.++|+|++|||||||++.++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998664
No 401
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.00055 Score=47.36 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|++.|.+||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00065 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+-..|+++|.+||||||+++.|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999865
No 403
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.93 E-value=0.00049 Score=48.84 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-++++|++|+|||||++.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57889999999999999866
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.00075 Score=46.45 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|++.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.92 E-value=0.00047 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.....|+++|++||||||+.+.|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999865
No 406
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.92 E-value=0.00049 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~ 36 (199)
+++++|++|||||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999986643
No 407
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.92 E-value=0.00053 Score=55.32 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|. +...-.|++++..+|+++++|||+.+ ||...+
T Consensus 156 ~~~LSgG--ekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~ 194 (538)
T 1yqt_A 156 IQHLSGG--ELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQR 194 (538)
T ss_dssp GGGCCHH--HHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence 3445443 44456799999999999999999999 998764
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00048 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
.-.|+++|++||||||+++.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45789999999999999998653
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00058 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
++|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999864
No 410
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00059 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|++.|.+||||||+.+.|.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 411
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.90 E-value=0.00064 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.+++.|++|+|||+|++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999865
No 412
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.89 E-value=0.0031 Score=49.47 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=41.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHh---c---------------CCCC---CccccceeEEEeeEEE--Ee-cCcEEEEE
Q 029077 10 DYPSFKLVIVGDGGTGKTTFVKRHL---T---------------GEFE---KKYEPTIGVEVHPLDF--FT-NCGKIRFY 65 (199)
Q Consensus 10 ~~~~~~i~viG~~~~GKStli~~l~---~---------------~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 65 (199)
..+..-|.|+|+.++|||+|+|.++ . ..|. ....-|.|+-.....+ .. ++....+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 4456778899999999999999543 1 1221 1122355554443222 22 45678899
Q ss_pred EEeCCCccc
Q 029077 66 CWDTAGQEK 74 (199)
Q Consensus 66 l~D~~g~~~ 74 (199)
+.||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999654
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.88 E-value=0.00052 Score=54.46 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccccccc-cc------c----c-ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 029077 62 IRFYCWDTAGQEKFGGL-RD------G----Y-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (199)
Q Consensus 62 ~~~~l~D~~g~~~~~~~-~~------~----~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~ 129 (199)
+.+.++||+|....... .. . + ....+-++++.|++.... .......+.... .. ..+|+||.|.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~-~i-tgvIlTKLD~ 450 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV-GL-TGITLTKLDG 450 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT-CC-SEEEEECGGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc-CC-CEEEEEcCCC
Confidence 55778999996432111 10 0 1 113567888999775532 112222232221 22 2467899986
Q ss_pred CCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (199)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 160 (199)
.. .....+.+....+.++.++. +|.++
T Consensus 451 ta--kgG~~lsi~~~~~~PI~fig--~Ge~v 477 (503)
T 2yhs_A 451 TA--KGGVIFSVADQFGIPIRYIG--VGERI 477 (503)
T ss_dssp CS--CCTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred cc--cccHHHHHHHHHCCCEEEEe--cCCCh
Confidence 32 23344566666777766643 34444
No 414
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.87 E-value=0.00053 Score=54.90 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++|+|++||||||+++.++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998653
No 415
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.87 E-value=0.00022 Score=50.19 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 416
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.87 E-value=0.00062 Score=46.08 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|++.|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999865
No 417
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.86 E-value=0.00055 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.++++|++|+|||||++.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 58999999999999999865
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.85 E-value=0.00047 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 029077 15 KLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~~ 36 (199)
-++|+|..|||||||++.+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4688999999999999997743
No 419
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.84 E-value=0.00065 Score=46.59 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+++|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999865
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00076 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-.+|+|++|+|||||+..+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999854
No 421
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.83 E-value=0.00072 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 029077 16 LVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~ 34 (199)
|+|+|+|||||+|...+|.
T Consensus 32 I~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999999998865
No 422
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.00068 Score=49.82 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
++++|++|+|||||++.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999998653
No 423
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.0008 Score=45.43 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|++.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999865
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00088 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
-.++.|+++|..||||||+.+.|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999865
No 425
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.0017 Score=49.27 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
+++.|++|+||||+++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999997654
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.80 E-value=0.0009 Score=48.76 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|++.|.+||||||+.+.|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 427
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.79 E-value=0.046 Score=40.56 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=44.0
Q ss_pred EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEE-EEEeCCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDV 129 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~i-iv~~K~D~ 129 (199)
.+.+.++|+++.-.. ......+..+|.+|++...+ ..+...+...+..+... ..+.+++ +|.|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~-~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVC-GGFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCC-GGGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccch-HHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 478899999764331 12244567899999988754 45566666666666553 2456655 78899984
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.77 E-value=0.0007 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
=.++|+|++|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999997653
No 429
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.001 Score=54.41 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=29.9
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.++|. +...-.|++++..+|+++++|||+.+ ||..+.
T Consensus 220 ~~LSgG--e~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~ 257 (608)
T 3j16_B 220 EKLSGG--ELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQR 257 (608)
T ss_dssp TTCCHH--HHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHH
T ss_pred HHCCHH--HHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHH
Confidence 444443 44456799999999999999999999 998764
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00078 Score=48.84 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-+|+++|++||||||+.+.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 431
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.0009 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++++|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999998764
No 432
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.73 E-value=0.00081 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++|+|++|+|||||++.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 578999999999999998653
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.73 E-value=0.00083 Score=52.74 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
+++++|++|||||||++.+.+
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998653
No 434
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.72 E-value=0.00087 Score=54.79 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=30.7
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|. +.-.-.|++++..+|+++++|||+.+ ||...+
T Consensus 226 ~~~LSGG--ekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~ 264 (607)
T 3bk7_A 226 LHQLSGG--ELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQR 264 (607)
T ss_dssp GGGCCHH--HHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHH
T ss_pred hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence 4455554 34456699999999999999999999 998764
No 435
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.72 E-value=0.00093 Score=47.04 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999764
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.71 E-value=0.00074 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.+++.|++|+|||+|++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4468999999999999999865
No 437
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.00097 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.++++|++|+|||||++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 359999999999999999865
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.69 E-value=0.0014 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+-..|++.|++||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999865
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.68 E-value=0.0013 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|+++|.+||||||+++.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999854
No 440
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.68 E-value=0.0011 Score=47.11 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.+++.|++|+|||+|++.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.64 E-value=0.0014 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.|+|.|.+||||||+.+.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999864
No 442
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.63 E-value=0.0014 Score=46.86 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
.+++++|+|++||||||+.+.|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999999864
No 443
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.61 E-value=0.00075 Score=50.06 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+.+.|+|.|++||||||+.+.|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999865
No 444
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.60 E-value=0.0014 Score=45.56 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.+++.|++|+|||+|++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 445
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.59 E-value=0.0014 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
....|++.|++|+|||++++.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998653
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.57 E-value=0.0013 Score=50.48 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHHHh------CCCCCceecCCCCCCcccchhHhhh
Q 029077 164 FLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 164 ~~~i~~~~~------~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
.-.|++++. .+|.++++|||+.+ +|....
T Consensus 287 r~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~ 321 (365)
T 3qf7_A 287 LISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENK 321 (365)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHH
T ss_pred HHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHH
Confidence 445666666 79999999999999 998765
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0017 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.+...|+|+|.+||||||+.+.|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999999865
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.56 E-value=0.0016 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.538 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 029077 14 FKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~~ 35 (199)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998764
No 449
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.52 E-value=0.0015 Score=56.11 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=27.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|.. ...-.|++++..+|+++++|||+.+ +|...+
T Consensus 546 ~~~LSGGq--kQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~ 584 (986)
T 2iw3_A 546 ISALSGGW--KMKLALARAVLRNADILLLDEPTNH-----LDTVNV 584 (986)
T ss_dssp GGGCCHHH--HHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHH
T ss_pred cccCCHHH--HHHHHHHHHHhcCCCEEEEECCccC-----CCHHHH
Confidence 34454443 3345688888888888888888888 887654
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.52 E-value=0.0014 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.++++|++|+|||||++.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999865
No 451
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.52 E-value=0.0014 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998664
No 452
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.50 E-value=0.0015 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+.+.|++.|.+||||||+.+.|.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999754
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.49 E-value=0.0022 Score=47.64 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 445689999999999999998644
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0026 Score=49.66 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
...-|+++|.+||||||+.++|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44568899999999999999965
No 455
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.0023 Score=48.11 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
..|+|+|++|||||||...|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 456
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.44 E-value=0.0017 Score=55.71 Aligned_cols=39 Identities=26% Similarity=0.205 Sum_probs=31.5
Q ss_pred eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
++.++|...+. -.|++++..+|.++++|||+.+ ||....
T Consensus 899 ~~~LSGGQkQR--VaLArAL~~~P~LLLLDEPT~g-----LD~~s~ 937 (986)
T 2iw3_A 899 IRGLSGGQKVK--LVLAAGTWQRPHLIVLDEPTNY-----LDRDSL 937 (986)
T ss_dssp GGGCCHHHHHH--HHHHHHHTTCCSEEEEECGGGT-----CCHHHH
T ss_pred ccccCHHHHHH--HHHHHHHHhCCCEEEEECCccC-----CCHHHH
Confidence 45666654444 5699999999999999999999 998764
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.43 E-value=0.0018 Score=45.87 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.++|.|++|+|||||++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999865
No 458
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.43 E-value=0.0028 Score=47.08 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+.-.+++.|++|+|||++++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHH
Confidence 445799999999999999998653
No 459
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0019 Score=45.13 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
.+++.|++|+|||++++.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 39999999999999999865
No 460
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.41 E-value=0.002 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+.-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346899999999999999998653
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0021 Score=45.04 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-.+|+|++|+|||||+..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999754
No 462
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.40 E-value=0.002 Score=47.91 Aligned_cols=86 Identities=10% Similarity=0.083 Sum_probs=46.6
Q ss_pred cEEEEEEEeCCCccccccc-c---ccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc
Q 029077 60 GKIRFYCWDTAGQEKFGGL-R---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR 132 (199)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~ 132 (199)
..+.+.++||+|....... . ...+. ..+.+++|+|++... ..+..+...+. ..+ .-+|.||.|....
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~----~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFS----SVPVNQYIFTKIDETTS 254 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTS----SSCCCEEEEECTTTCSC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHh----cCCCCEEEEeCCCcccc
Confidence 3467899999996543221 1 11222 367788888876431 22333222221 122 2356699998643
Q ss_pred cccHHHHHHHHHcCCcEEEec
Q 029077 133 QVKAKQVTFHRKKNLQYYEIS 153 (199)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~s 153 (199)
. ......+...+.++..++
T Consensus 255 ~--g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 L--GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp C--HHHHHHHHTCSCCCSEEC
T ss_pred h--hHHHHHHHHHCcCEEEEE
Confidence 2 244566667777755544
No 463
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.40 E-value=0.0026 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...+++.|++|+|||+|++.+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567888999999999999865
No 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.39 E-value=0.0024 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
..-.+++.|++|+|||+|++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34569999999999999999865
No 465
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.37 E-value=0.0026 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.+++.|++|+|||++++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999865
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.35 E-value=0.0022 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcC
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~ 36 (199)
....|+|+|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999997643
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.35 E-value=0.002 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
.-.+++.|++|+||||++..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3459999999999999988755
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.33 E-value=0.0029 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
..-|+|.|++|||||||...+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 34688999999999999999653
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0022 Score=45.88 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-++++|++|+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987765
No 470
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.32 E-value=0.0027 Score=47.20 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
.-.|++.|++|+|||+|++.+..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999998653
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.32 E-value=0.002 Score=51.86 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 029077 15 KLVIVGDGGTGKTTFVKRH 33 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l 33 (199)
.++|+|++|||||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999999985
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.31 E-value=0.0021 Score=48.93 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
-+.|+|++|+|||||+..+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998664
No 473
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.29 E-value=0.0037 Score=45.68 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~~ 35 (199)
.....+++.|++|+|||+|++.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556899999999999999998653
No 474
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.28 E-value=0.0025 Score=47.60 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCcccccccc-------c-c----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077 61 KIRFYCWDTAGQEKFGGLR-------D-G----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128 (199)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~-------~-~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D 128 (199)
.+.+.+.|+||........ . . .-..++.+++|.|++.... .+. ....+... .+. .-+|.||.|
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~--~l~-~a~~~~~~-~~i-~gvVlTk~D 260 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN--GLV-QAKIFKEA-VNV-TGIILTKLD 260 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH--HHH-HHHHHHHH-SCC-CEEEEECGG
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH--HHH-HHHHHHhc-CCC-CEEEEeCCC
Confidence 3568899999853221110 0 0 1134788899999874321 111 12223222 122 235679999
Q ss_pred CCCccccHHHHHHHHHcCCcEEEecc
Q 029077 129 VKNRQVKAKQVTFHRKKNLQYYEISA 154 (199)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~s~ 154 (199)
..... ..........+.++.+++.
T Consensus 261 ~~~~g--G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKG--GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCT--THHHHHHHHHCCCEEEEEC
T ss_pred Cccch--HHHHHHHHHHCCCEEEEeC
Confidence 65332 2355677777888766644
No 475
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.0024 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
-.+++.|++|+|||+|++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999865
No 476
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.26 E-value=0.0019 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
.+...|+|.|..||||||+++.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 455789999999999999999754
No 477
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.23 E-value=0.0015 Score=43.00 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...|++.|++|+|||++++.+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 3569999999999999999743
No 478
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.21 E-value=0.0035 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=22.3
Q ss_pred cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077 9 VDYPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 9 ~~~~~~~i~viG~~~~GKStli~~l~ 34 (199)
...+.+|++++|...|||||+++++-
T Consensus 36 ~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 36 VYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HhhccceEEEecCCCCchhhHHHHHH
Confidence 34668999999999999999998744
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.20 E-value=0.0029 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
.-|+|+|++|||||||...|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 469999999999999999865
No 480
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0028 Score=48.34 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhc
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~ 35 (199)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998653
No 481
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.16 E-value=0.0044 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
...+|+++|++|+||||+.+.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998644
No 482
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.15 E-value=0.00036 Score=49.84 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
++|+|++|||||||++.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46889999999999998653
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.14 E-value=0.0038 Score=42.41 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhcC
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~~~ 36 (199)
-.-|++.|++|+||||+.-.|+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346899999999999999988753
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0032 Score=47.65 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 029077 16 LVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~ 35 (199)
+++.|++|+||||+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998653
No 485
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.11 E-value=0.0034 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh
Q 029077 13 SFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 13 ~~~i~viG~~~~GKStli~~l~ 34 (199)
...+++.|++|+|||++++.+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999865
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.10 E-value=0.0021 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+-..|+|+|++|||||||++.|.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHH
Confidence 34579999999999999999865
No 487
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.0037 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 029077 15 KLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~~ 35 (199)
.++|.|++|+|||||++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998663
No 488
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.08 E-value=0.0024 Score=52.91 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=29.6
Q ss_pred eccCCCCChHHHHHHHHHHHhCCC---CCceecCCCCCCcccchhHhhhc
Q 029077 152 ISAKSNYNFEKPFLYLARKLAGDP---NLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 152 ~s~~~~~~v~~~~~~i~~~~~~~~---~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
...++|.. .-.-.|++++..+| +++++|||+.+ +|...+.
T Consensus 541 ~~~LSgG~--~qrv~iAraL~~~p~~p~llllDEPt~~-----LD~~~~~ 583 (670)
T 3ux8_A 541 ATTLSGGE--AQRVKLAAELHRRSNGRTLYILDEPTTG-----LHVDDIA 583 (670)
T ss_dssp GGGCCHHH--HHHHHHHHHHHSCCCSCEEEEEESTTTT-----CCHHHHH
T ss_pred chhCCHHH--HHHHHHHHHHhhCCCCCcEEEEeCCCCC-----CCHHHHH
Confidence 34555543 44566999998776 49999999999 9987653
No 489
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.07 E-value=0.0036 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077 165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
-.+++++..+|.++++|||+.+ +|...+
T Consensus 263 l~~a~~l~~~p~~lllDEp~~~-----LD~~~~ 290 (339)
T 3qkt_A 263 LAMSLYLAGEISLLILDEPTPY-----LDEERR 290 (339)
T ss_dssp HHHHHHTTTTTCEEEEECCCTT-----CCHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCC-----CCHHHH
Confidence 4567888899999999999999 998764
No 490
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.07 E-value=0.0039 Score=42.73 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 029077 16 LVIVGDGGTGKTTFVKRHLTG 36 (199)
Q Consensus 16 i~viG~~~~GKStli~~l~~~ 36 (199)
|+|+|.+|||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999997644
No 491
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.013 Score=41.54 Aligned_cols=154 Identities=8% Similarity=0.015 Sum_probs=69.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEE-eCCC-ccccc-cc----cccccc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-DTAG-QEKFG-GL----RDGYYI 84 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~-~~----~~~~~~ 84 (199)
+++=|++-|.++.|||+|+++++...- .......+. .....+....+.+| |.-. ...+. .. ......
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~~~-~~~~i~k~v-----~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~ 101 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHCSS-TGISIVKDQ-----TWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRN 101 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCCCC-CSSCEEEEE-----EEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHH
T ss_pred CceEEEecCcccccHHHHHHHHhcccc-cccccccCC-----eeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHH
Confidence 334444449999999999999775421 111112222 22334445666665 4321 11100 00 011122
Q ss_pred CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccC-------
Q 029077 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAK------- 155 (199)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~------- 155 (199)
...++|+|++.........+.... .....+.-+++|+.-.+...... ..+....+...++.|+.....
T Consensus 102 viggII~~f~~p~~~~~~~i~~~~---~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~~~~n 178 (233)
T 3uc9_A 102 VMAGIILITDIRQTKPQELLHQFM---IAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWKRSKPTVNHN 178 (233)
T ss_dssp TEEEEEEEECHHHHCGGGTHHHHH---HHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC----CCCBC
T ss_pred hcceEEEEEeCCCcchHHHHHHHh---ccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEecCCCcccccc
Confidence 347899999765544443333322 22212344445543332221111 111122334456777765321
Q ss_pred ---CCCChHHHHHHHHHHHhCC
Q 029077 156 ---SNYNFEKPFLYLARKLAGD 174 (199)
Q Consensus 156 ---~~~~v~~~~~~i~~~~~~~ 174 (199)
...|+..+.+.|-.....+
T Consensus 179 e~gE~~Gi~RI~E~Le~h~W~~ 200 (233)
T 3uc9_A 179 DYGEKLGLDRIQEIIDTHDWLN 200 (233)
T ss_dssp TTSCBCHHHHHHHHHHHCCCTT
T ss_pred cccchhCHHHHHHHHHhCCCCC
Confidence 2235666665555444433
No 492
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.05 E-value=0.0028 Score=47.66 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHh----CCCCCceecCCCCCCcccchhHhhh
Q 029077 161 EKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 161 ~~~~~~i~~~~~----~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
+.-.-.|++++. ..+.++++|||+.+ +|....
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~ 259 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNA 259 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHH
Confidence 334456777765 67899999999999 998754
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.05 E-value=0.0051 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh
Q 029077 11 YPSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 11 ~~~~~i~viG~~~~GKStli~~l~ 34 (199)
|+-.-|++.|.+||||||+++.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 455789999999999999999864
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.04 E-value=0.0046 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
+...|++.|++|+|||+|++.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34579999999999999999865
No 495
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.0046 Score=46.50 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhc
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHLT 35 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~~ 35 (199)
+.-.|++.|++|+|||+|++.+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999998663
No 496
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.04 E-value=0.001 Score=51.73 Aligned_cols=33 Identities=18% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCC--CCceecCCCCCCcccchhHhhhc
Q 029077 161 EKPFLYLARKLAGDP--NLHFVESPALAPPEVQIDLAAQQ 198 (199)
Q Consensus 161 ~~~~~~i~~~~~~~~--~~~~~~~p~~~~~~~~~d~~~~~ 198 (199)
+.-.-.|+.++..++ .++++|||+.+ ||...++
T Consensus 300 e~qrl~lA~~l~~~~~~~~LlLDEpt~~-----LD~~~~~ 334 (415)
T 4aby_A 300 ELSRVMLAVSTVLGADTPSVVFDEVDAG-----IGGAAAI 334 (415)
T ss_dssp HHHHHHHHHHHHHCCSSSEEEESSTTTT-----CCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCC-----CCHHHHH
Confidence 344456888999999 99999999999 9987653
No 497
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0047 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 029077 12 PSFKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 12 ~~~~i~viG~~~~GKStli~~l~ 34 (199)
..-.|++.||||+|||+|++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHH
Confidence 34589999999999999999865
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.01 E-value=0.0059 Score=45.52 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 029077 14 FKLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 14 ~~i~viG~~~~GKStli~~l~ 34 (199)
.-|+|+|++|||||||...+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 358899999999999999865
No 499
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.01 E-value=0.004 Score=47.55 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHh---------CCCCCceecCCCCCCcccchhHhhh
Q 029077 163 PFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQ 197 (199)
Q Consensus 163 ~~~~i~~~~~---------~~~~~~~~~~p~~~~~~~~~d~~~~ 197 (199)
-.-.|+.++. ..|.++++|||+.+ +|...+
T Consensus 272 q~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~ 310 (359)
T 2o5v_A 272 RTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRR 310 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHH
Confidence 3445777777 79999999999999 998764
No 500
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.00 E-value=0.0037 Score=48.48 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 029077 15 KLVIVGDGGTGKTTFVKRHL 34 (199)
Q Consensus 15 ~i~viG~~~~GKStli~~l~ 34 (199)
-++|+|++|+|||||+..+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 57899999999999999765
Done!