BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029078
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2A33|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At2g37210
pdb|2Q4O|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
pdb|2Q4O|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At2g37210
Length = 215
Score = 283 bits (725), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 146/183 (79%), Positives = 163/183 (89%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
KS+F+R+CVFCGSS GK SYQ AA+ LG +LV RNIDLVYGGGSIGL GLVSQAV+DGG
Sbjct: 10 KSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDGG 69
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
RHV+G+IPKTL PRE+TG+TVGEV+AV+ HQRKAE A+ +DAFIALPGGYGTLEELLEV
Sbjct: 70 RHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLEV 129
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194
ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAV+EGFI+P AR IIVSA TA EL+ KLE
Sbjct: 130 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLE 189
Query: 195 SKA 197
A
Sbjct: 190 EYA 192
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|1YDH|B Chain B, X-Ray Structure Of A Lysine Decarboxylase-Like Protein
From Arabidopsis Thaliana Gene At5g11950
pdb|2Q4D|A Chain A, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
pdb|2Q4D|B Chain B, Ensemble Refinement Of The Crystal Structure Of A Lysine
Decarboxylase-Like Protein From Arabidopsis Thaliana
Gene At5g11950
Length = 216
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/172 (65%), Positives = 139/172 (80%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
+SRF+++CVFCGS G + AAI+LG +LV+R IDLVYGGGS+GL GL+S+ VY+GG
Sbjct: 6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLXGLISRRVYEGG 65
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
HVLG+IPK L P EI+G+TVG+V+ V+ H+RKA A++A+AFIALPGGYGT EELLE
Sbjct: 66 LHVLGIIPKALXPIEISGETVGDVRVVADXHERKAAXAQEAEAFIALPGGYGTXEELLEX 125
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186
ITW+QLGIH K VGLLNVDGYYN+LL+ D V+EGFI P AR I+VSA TA
Sbjct: 126 ITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTA 177
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|B Chain B, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|C Chain C, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|D Chain D, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|E Chain E, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|F Chain F, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|G Chain G, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
pdb|1T35|H Chain H, Crystal Structure Of A Hypothetical Protein Yvdd- A
Putative Lysine Decarboxylase
Length = 191
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 105/172 (61%)
Query: 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVL 78
K +CVF GS+PG + +Y+ A +LG E+ I LVYGG +GL G ++ A+ + G +
Sbjct: 2 KTICVFAGSNPGGNEAYKRKAAELGVYXAEQGIGLVYGGSRVGLXGTIADAIXENGGTAI 61
Query: 79 GVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWA 138
GV P L E+ + E+ V+G H+RKA+ + AD FI+ PGG+GT EEL EV+ WA
Sbjct: 62 GVXPSGLFSGEVVHQNLTELIEVNGXHERKAKXSELADGFISXPGGFGTYEELFEVLCWA 121
Query: 139 QLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELI 190
Q+GIH KP+GL NV+GY+ + ++ EGF + +I S+ ELI
Sbjct: 122 QIGIHQKPIGLYNVNGYFEPXXKXVKYSIQEGFSNESHLKLIHSSSRPDELI 173
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
pdb|3QUA|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
And Possible Molybdenum Cofactor Protein From
Mycobacterium Smegmatis
Length = 199
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGG 74
+ R VCV+C S P +LAA ++G + R LV GGG++ MG V+QA G
Sbjct: 19 QDRQWAVCVYCASGPTHPELLELAA-EVGSSIAARGWTLVSGGGNVSAMGAVAQAARAKG 77
Query: 75 RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134
H +GVIPK L+ RE+ E+ M +RK EM ++DAFIALPGG GTLEE E
Sbjct: 78 GHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRSDAFIALPGGIGTLEEFFEA 137
Query: 135 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 173
T LG+HDKP+ LL+ G+Y+ LL+++ V G+++
Sbjct: 138 WTAGYLGMHDKPLILLDPFGHYDGLLTWLRGLVPTGYVS 176
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|C Chain C, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|D Chain D, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|E Chain E, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|F Chain F, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|G Chain G, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
pdb|3SBX|H Chain H, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Marinum Bound To Adenosine
5'-Monophosphate Amp
Length = 189
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80
V V+C ++P +LA + R LV+GGG + MG VS A G +GV
Sbjct: 16 VAVYCAAAPTHPELLELAGAVG-AAIAARGWTLVWGGGHVSAMGAVSSAARAHGGWTVGV 74
Query: 81 IPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQL 140
IPK L+ RE+ E+ M +RK M +A+AFI LPGG GTL+ELL+V T L
Sbjct: 75 IPKMLVHRELADHDADELVVTETMWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGYL 134
Query: 141 GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA--RYIIVS 182
G+HDK + +L+ G+++ L +++ + D G+++ A R I+V
Sbjct: 135 GMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD 178
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDK 165
RK R A F+ LPGG+GTL+EL EV+ Q +H PV LL+ GY+ L+ ++
Sbjct: 124 RKVLFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLD-RGYWEGLVRWLAF 182
Query: 166 AVDEGFIAPAARYIIVSAQTAHELICKLESKA 197
D+ + P + E++ L+++A
Sbjct: 183 LRDQKAVGPEDLQLFRLTDEPEEVVQALKAEA 214
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|B Chain B, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|C Chain C, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
pdb|1RCU|D Chain D, X-Ray Structure Of Tm1055 Northeast Structural Genomics
Consortium Target Vt76
Length = 195
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 14 LKSRFKRVCVFCGSSP-GKSPSYQLAAI--QLGKQLVERNIDLVYGGGSIGLMGLVSQAV 70
+ K+V V S P KSP +L I +LG+ L ++ LV+ GG G+ LVSQ V
Sbjct: 19 FQGHXKKVVVVGYSGPVNKSPVSELRDICLELGRTLAKKGY-LVFNGGRDGVXELVSQGV 77
Query: 71 YDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGM--HQRKAEMARQADAFIALPGGYGTL 128
+ G V+G++P E G+ V +G+ R + R AD +++ G GT
Sbjct: 78 REAGGTVVGILPD-----EEAGNPYLSVAVKTGLDFQXRSFVLLRNADVVVSIGGEIGT- 131
Query: 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS 161
+E++ LG KPV LL G + +S
Sbjct: 132 --AIEILGAYALG---KPVILLRGTGGWTDRIS 159
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 19 KRVCVFCGSSPGKSPSYQLAA--IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH 76
+ + VF S SP L A ++ G+ L E L GG G L ++ V G
Sbjct: 2 RLLAVFVSSR--LSPEDPLYARWVRYGEVLAEEGFGLACGGYQGGXEAL-ARGVKAKGGL 58
Query: 77 VLGVIPKTLMPREITGDTVGEVK-AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 135
V+GV P + +++ + + QR + ++ALPGG GTL EL V+
Sbjct: 59 VVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLGAGYLALPGGVGTLAEL--VL 116
Query: 136 TWAQLGIHDKPVGLLNVDGYYNSLLS 161
W L + L VD Y+ LL
Sbjct: 117 AWNLLYLRRGVGRPLAVDPYWLGLLK 142
>pdb|2PMB|A Chain A, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|B Chain B, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|C Chain C, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|2PMB|D Chain D, Crystal Structure Of Predicted Nucleotide-binding Protein
From Vibrio Cholerae
pdb|3GH1|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|C Chain C, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
pdb|3GH1|D Chain D, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Vibrio Cholerae
Length = 462
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 78 LGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITW 137
LG+ +++ E V E+ + +R R A I PGG GT EELL +
Sbjct: 211 LGLTEPSIIAAEPPNPIVNELVIXPDIEKRLEAFVRXAHGIIIFPGGPGTAEELLYI--- 267
Query: 138 AQLGIHDKP-----------VGLLNVDGYYNSLLSFIDKAVDEG 170
LGI P G + Y+ SL FI + E
Sbjct: 268 --LGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITDTLGEA 309
>pdb|3BQ9|A Chain A, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
pdb|3BQ9|B Chain B, Crystal Structure Of Predicted Nucleotide-Binding Protein
From Idiomarina Baltica Os145
Length = 460
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 63 MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122
+G Q V +GGR+ LG+ ++ E V E+ + + +R R A + P
Sbjct: 196 IGHAKQRV-EGGRY-LGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFP 253
Query: 123 GGYGTLEELL 132
GG GT EELL
Sbjct: 254 GGAGTAEELL 263
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 25 CGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKT 84
C P PS + I++ +QL E+ ID V G + L+G Y+G ++ + P +
Sbjct: 56 CALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEG--RIVNIHP-S 112
Query: 85 LMP 87
L+P
Sbjct: 113 LLP 115
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 85 LMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHD 144
++PR + G V G+ R+ E A++ +A+P YG+ EEL + D
Sbjct: 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKXAKELAIPVAYGSYEELCK----------D 65
Query: 145 KPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLESKAV 198
+ + ++ + Y S A+ +G + ++A A EL + + V
Sbjct: 66 ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV 119
>pdb|2IZ5|A Chain A, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|B Chain B, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|C Chain C, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ5|D Chain D, Function And Structure Of The Molybdenum Cofactor Carrier
Protein Mcp From Chlamydomonas Reinhardtii
pdb|2IZ6|A Chain A, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ6|B Chain B, Structure Of The Chlamydomonas Rheinhardtii Moco Carrier
Protein
pdb|2IZ7|A Chain A, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
pdb|2IZ7|B Chain B, Structure Of Moco Carrier Protein From Chlamydomonas
Reinhardtii
Length = 176
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 29 PGKSPSYQ---LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL 85
PGK+ + + + A +LGKQ+ L+ GG S+G+M + + G +GV+P
Sbjct: 21 PGKADTAENQLVMANELGKQIATHGWILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPD 80
Query: 86 MPREITGDTVGEVKAVSGMHQRKAEM-ARQADAFIALPGGYGTLEEL 131
EI+ D V ++ V+G+ + + A ++ +A+ G GT E+
Sbjct: 81 T-SEIS-DAV-DIPIVTGLGSARDNINALSSNVLVAVGMGPGTAAEV 124
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183
AQ D P G L VD S F DK EG I A+ +++SA
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISA 135
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 138 AQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183
AQ D P G L VD S F DK EG I A+ +++SA
Sbjct: 90 AQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISA 135
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 72 DGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEEL 131
DG +HV I KT++ RE G +VGE + M Q GT E++
Sbjct: 45 DGAQHVSSNI-KTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQ-------EGTKEKV 96
Query: 132 LEVIT 136
LE +
Sbjct: 97 LEYVN 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,710,776
Number of Sequences: 62578
Number of extensions: 240553
Number of successful extensions: 553
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 27
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)