Query 029078
Match_columns 199
No_of_seqs 135 out of 1162
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 3.7E-55 8E-60 356.6 21.0 178 19-196 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 3.9E-45 8.6E-50 303.4 19.7 186 12-198 8-197 (205)
3 TIGR00725 conserved hypothetic 100.0 2.5E-42 5.4E-47 276.6 19.0 157 18-193 1-158 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 2.5E-39 5.5E-44 252.0 15.6 131 63-193 1-133 (133)
5 TIGR00732 dprA DNA protecting 99.7 8.3E-15 1.8E-19 123.1 17.3 155 19-192 45-219 (220)
6 PF02481 DNA_processg_A: DNA r 99.3 3.2E-11 7E-16 100.8 13.2 143 18-170 44-206 (212)
7 PRK10736 hypothetical protein; 99.2 5.9E-10 1.3E-14 100.3 16.9 156 19-193 108-283 (374)
8 COG0758 Smf Predicted Rossmann 99.0 1.3E-08 2.8E-13 90.9 15.8 142 19-170 112-272 (350)
9 PF12694 MoCo_carrier: Putativ 97.2 0.0074 1.6E-07 47.7 11.3 94 53-153 1-99 (145)
10 PF05014 Nuc_deoxyrib_tr: Nucl 95.8 0.025 5.5E-07 42.1 5.6 46 102-153 49-98 (113)
11 KOG3614 Ca2+/Mg2+-permeable ca 95.6 0.28 6E-06 50.6 13.6 155 19-177 119-328 (1381)
12 PF13528 Glyco_trans_1_3: Glyc 95.3 0.56 1.2E-05 40.1 13.0 124 49-196 192-317 (318)
13 COG3660 Predicted nucleoside-d 94.3 1.5 3.3E-05 38.4 12.8 136 15-177 158-299 (329)
14 PF11071 DUF2872: Protein of u 94.2 1.3 2.8E-05 34.7 10.9 71 105-194 63-137 (141)
15 TIGR01133 murG undecaprenyldip 93.5 4.4 9.5E-05 34.8 15.9 34 110-153 246-279 (348)
16 PF06908 DUF1273: Protein of u 92.9 1.8 3.9E-05 35.3 10.5 91 32-122 21-137 (177)
17 TIGR03646 YtoQ_fam YtoQ family 92.7 3.5 7.6E-05 32.4 11.2 74 105-194 66-140 (144)
18 cd03784 GT1_Gtf_like This fami 92.2 2.9 6.3E-05 37.0 11.9 48 110-170 300-347 (401)
19 PRK13609 diacylglycerol glucos 91.8 8.5 0.00018 33.9 14.5 71 106-196 265-335 (380)
20 PF10686 DUF2493: Protein of u 91.5 2.3 5E-05 29.4 8.2 61 20-83 5-66 (71)
21 COG0707 MurG UDP-N-acetylgluco 91.3 11 0.00023 34.0 15.6 79 102-196 240-321 (357)
22 PF04101 Glyco_tran_28_C: Glyc 91.3 0.87 1.9E-05 35.6 6.7 53 109-171 67-120 (167)
23 cd03785 GT1_MurG MurG is an N- 91.0 9.3 0.0002 32.8 15.8 37 106-152 244-280 (350)
24 TIGR01426 MGT glycosyltransfer 91.0 5.5 0.00012 35.4 12.3 32 110-151 287-318 (392)
25 PRK00025 lpxB lipid-A-disaccha 90.7 2.1 4.5E-05 37.6 9.3 32 109-151 256-287 (380)
26 TIGR03590 PseG pseudaminic aci 90.7 5.3 0.00011 34.3 11.6 36 106-152 233-268 (279)
27 PLN02605 monogalactosyldiacylg 90.6 11 0.00025 33.4 14.0 70 107-196 275-344 (382)
28 PRK10565 putative carbohydrate 90.6 1.5 3.2E-05 41.4 8.6 99 49-154 254-356 (508)
29 PRK12446 undecaprenyldiphospho 89.9 14 0.0003 32.9 14.2 31 110-150 248-278 (352)
30 PRK13660 hypothetical protein; 89.5 11 0.00023 31.0 11.7 102 48-151 40-167 (182)
31 TIGR00661 MJ1255 conserved hyp 86.2 21 0.00046 30.8 12.9 54 107-171 240-293 (321)
32 TIGR00215 lpxB lipid-A-disacch 85.5 23 0.0005 31.8 12.7 32 111-153 264-295 (385)
33 PF06258 Mito_fiss_Elm1: Mitoc 83.9 30 0.00065 30.6 17.4 76 111-195 225-307 (311)
34 PRK05749 3-deoxy-D-manno-octul 83.5 33 0.00071 30.7 17.1 80 97-196 303-385 (425)
35 COG3613 Nucleoside 2-deoxyribo 83.4 11 0.00024 30.8 8.6 53 105-163 59-119 (172)
36 COG1597 LCB5 Sphingosine kinas 82.8 2.5 5.5E-05 37.1 5.1 46 37-83 45-91 (301)
37 cd00587 HCP_like The HCP famil 80.2 20 0.00044 31.1 9.6 157 15-193 91-257 (258)
38 PRK13608 diacylglycerol glucos 80.0 7.3 0.00016 34.9 7.2 39 104-152 263-301 (391)
39 COG2185 Sbm Methylmalonyl-CoA 79.2 6.3 0.00014 31.2 5.7 44 37-81 27-70 (143)
40 PRK00726 murG undecaprenyldiph 78.4 16 0.00035 31.7 8.7 77 103-196 241-321 (357)
41 PRK00696 sucC succinyl-CoA syn 77.8 53 0.0012 29.6 13.8 71 115-196 311-384 (388)
42 TIGR00196 yjeF_cterm yjeF C-te 76.8 18 0.00039 30.8 8.4 44 107-154 85-128 (272)
43 PRK03501 ppnK inorganic polyph 74.9 32 0.00069 29.8 9.4 32 19-54 3-34 (264)
44 COG1819 Glycosyl transferases, 73.5 54 0.0012 29.9 11.1 90 46-151 234-327 (406)
45 PF13607 Succ_CoA_lig: Succiny 71.1 33 0.00071 26.6 7.9 123 51-194 4-136 (138)
46 KOG4022 Dihydropteridine reduc 69.9 31 0.00066 28.5 7.6 70 49-125 3-83 (236)
47 cd03808 GT1_cap1E_like This fa 69.1 18 0.00039 29.8 6.5 70 108-196 257-326 (359)
48 cd02201 FtsZ_type1 FtsZ is a G 68.6 28 0.00061 30.4 7.8 72 43-122 79-154 (304)
49 PRK08105 flavodoxin; Provision 68.5 5.7 0.00012 31.1 3.1 34 18-54 1-34 (149)
50 PRK02155 ppnK NAD(+)/NADH kina 68.4 30 0.00064 30.3 7.9 62 15-80 2-93 (291)
51 cd03795 GT1_like_4 This family 68.1 33 0.00071 28.9 8.0 72 105-196 254-329 (357)
52 COG1832 Predicted CoA-binding 67.7 11 0.00023 29.8 4.4 34 17-55 15-48 (140)
53 PRK02645 ppnK inorganic polyph 67.6 10 0.00022 33.4 4.8 107 17-171 2-117 (305)
54 TIGR02113 coaC_strep phosphopa 67.5 22 0.00047 28.8 6.4 84 113-196 75-176 (177)
55 cd03804 GT1_wbaZ_like This fam 67.4 33 0.00071 29.4 8.0 72 105-197 252-324 (351)
56 PRK09004 FMN-binding protein M 67.3 6.6 0.00014 30.6 3.2 34 18-54 1-34 (146)
57 COG0163 UbiX 3-polyprenyl-4-hy 66.8 12 0.00027 30.9 4.8 80 115-194 81-169 (191)
58 PRK09267 flavodoxin FldA; Vali 66.6 60 0.0013 25.3 9.0 27 18-47 1-27 (169)
59 smart00046 DAGKc Diacylglycero 66.0 8.5 0.00018 29.0 3.5 33 118-150 52-84 (124)
60 cd03820 GT1_amsD_like This fam 65.6 42 0.00092 27.4 8.0 71 106-196 244-316 (348)
61 PRK04539 ppnK inorganic polyph 65.1 32 0.00069 30.2 7.4 61 16-81 3-99 (296)
62 TIGR00519 asnASE_I L-asparagin 65.0 18 0.00039 32.2 6.0 51 112-165 75-130 (336)
63 cd00411 Asparaginase Asparagin 64.7 20 0.00042 31.8 6.1 50 113-165 77-131 (323)
64 PF00781 DAGK_cat: Diacylglyce 64.6 11 0.00023 28.4 3.8 44 40-84 43-91 (130)
65 COG0063 Predicted sugar kinase 64.4 99 0.0022 27.1 12.7 102 48-154 31-138 (284)
66 TIGR00060 L18_bact ribosomal p 64.0 21 0.00046 27.1 5.3 39 36-74 65-111 (114)
67 PRK09330 cell division protein 63.9 35 0.00075 31.3 7.6 71 44-122 93-167 (384)
68 COG0206 FtsZ Cell division GTP 63.4 65 0.0014 29.0 9.1 112 2-123 44-166 (338)
69 KOG2968 Predicted esterase of 63.2 5.2 0.00011 40.4 2.3 46 40-87 829-885 (1158)
70 cd02191 FtsZ FtsZ is a GTPase 63.1 60 0.0013 28.5 8.8 88 28-123 59-155 (303)
71 PF13692 Glyco_trans_1_4: Glyc 62.1 14 0.0003 27.0 4.0 71 107-198 63-134 (135)
72 PRK07313 phosphopantothenoylcy 61.8 38 0.00083 27.5 6.9 87 111-197 74-178 (182)
73 PRK06029 3-octaprenyl-4-hydrox 60.6 16 0.00035 29.9 4.5 80 114-194 78-167 (185)
74 PRK11914 diacylglycerol kinase 60.2 20 0.00043 31.0 5.2 44 38-83 52-96 (306)
75 cd03825 GT1_wcfI_like This fam 59.9 53 0.0011 27.7 7.8 42 106-155 256-299 (365)
76 cd06259 YdcF-like YdcF-like. Y 59.7 51 0.0011 25.0 7.0 9 118-126 37-45 (150)
77 PRK00861 putative lipid kinase 59.6 17 0.00037 31.3 4.7 43 39-83 46-89 (300)
78 cd03799 GT1_amsK_like This is 59.6 43 0.00093 28.1 7.2 72 106-196 247-324 (355)
79 PRK15484 lipopolysaccharide 1, 59.5 63 0.0014 28.6 8.5 41 106-154 268-311 (380)
80 PTZ00032 60S ribosomal protein 59.3 22 0.00047 29.9 5.0 39 36-74 162-208 (211)
81 cd07025 Peptidase_S66 LD-Carbo 59.0 77 0.0017 27.3 8.7 43 105-148 48-95 (282)
82 TIGR03702 lip_kinase_YegS lipi 58.7 20 0.00044 30.8 5.0 44 39-83 41-88 (293)
83 PF09152 DUF1937: Domain of un 58.7 11 0.00024 28.8 2.9 39 106-150 71-114 (116)
84 PF00534 Glycos_transf_1: Glyc 58.3 60 0.0013 24.6 7.2 74 105-197 83-156 (172)
85 cd03816 GT1_ALG1_like This fam 58.2 85 0.0018 28.2 9.2 70 106-196 306-378 (415)
86 PRK05723 flavodoxin; Provision 58.1 12 0.00026 29.4 3.2 33 19-54 1-33 (151)
87 PRK08227 autoinducer 2 aldolas 57.8 1.3E+02 0.0027 26.2 11.8 52 144-195 192-244 (264)
88 TIGR00421 ubiX_pad polyprenyl 57.7 65 0.0014 26.1 7.5 80 114-195 75-165 (181)
89 PRK14569 D-alanyl-alanine synt 57.6 27 0.00058 30.2 5.6 38 18-55 3-40 (296)
90 cd03818 GT1_ExpC_like This fam 57.3 49 0.0011 29.2 7.4 70 106-196 292-363 (396)
91 PRK03372 ppnK inorganic polyph 57.1 64 0.0014 28.5 7.9 62 15-80 2-102 (306)
92 cd01171 YXKO-related B.subtili 57.0 41 0.0009 28.0 6.5 42 110-155 73-114 (254)
93 cd03801 GT1_YqgM_like This fam 57.0 32 0.0007 28.1 5.8 68 108-196 269-338 (374)
94 PF14359 DUF4406: Domain of un 57.0 29 0.00064 25.1 4.9 38 105-148 50-90 (92)
95 PRK09922 UDP-D-galactose:(gluc 57.0 63 0.0014 28.1 7.9 72 105-197 248-322 (359)
96 PF00781 DAGK_cat: Diacylglyce 57.0 12 0.00027 28.0 3.0 38 111-150 48-88 (130)
97 cd04728 ThiG Thiazole synthase 56.9 1.3E+02 0.0028 26.0 13.4 107 13-136 88-195 (248)
98 PRK03378 ppnK inorganic polyph 56.7 63 0.0014 28.3 7.8 61 16-80 3-93 (292)
99 PF01182 Glucosamine_iso: Gluc 56.7 53 0.0012 26.7 7.0 83 112-195 18-109 (199)
100 cd03786 GT1_UDP-GlcNAc_2-Epime 56.4 1.3E+02 0.0028 25.8 15.8 36 106-152 269-304 (363)
101 COG1057 NadD Nicotinic acid mo 56.4 17 0.00036 30.2 3.9 41 17-57 1-42 (197)
102 COG1010 CobJ Precorrin-3B meth 55.9 1.3E+02 0.0029 25.9 10.7 108 42-153 64-196 (249)
103 COG3573 Predicted oxidoreducta 55.9 22 0.00047 32.7 4.7 83 51-142 141-245 (552)
104 PF00861 Ribosomal_L18p: Ribos 55.6 47 0.001 25.1 6.0 40 36-75 70-117 (119)
105 PRK00208 thiG thiazole synthas 55.6 1.4E+02 0.003 25.9 13.5 109 11-136 86-195 (250)
106 PRK13054 lipid kinase; Reviewe 55.4 25 0.00055 30.3 5.1 43 40-83 46-92 (300)
107 PRK08185 hypothetical protein; 54.5 1.5E+02 0.0032 26.0 11.4 100 28-135 100-217 (283)
108 TIGR00065 ftsZ cell division p 54.5 71 0.0015 28.7 7.9 59 56-122 112-171 (349)
109 TIGR02153 gatD_arch glutamyl-t 54.4 33 0.00072 31.6 5.9 49 115-165 140-193 (404)
110 cd04951 GT1_WbdM_like This fam 54.3 44 0.00096 28.1 6.4 67 109-196 257-323 (360)
111 COG0593 DnaA ATPase involved i 54.1 55 0.0012 30.3 7.2 102 37-149 96-213 (408)
112 COG0716 FldA Flavodoxins [Ener 53.8 21 0.00045 27.7 3.9 33 18-53 1-33 (151)
113 PRK11914 diacylglycerol kinase 53.4 1.5E+02 0.0032 25.6 10.1 28 118-150 67-94 (306)
114 PRK13337 putative lipid kinase 53.3 31 0.00067 29.8 5.3 44 39-83 46-91 (304)
115 PRK12738 kbaY tagatose-bisphos 53.1 1.6E+02 0.0034 25.8 11.7 95 32-135 110-221 (286)
116 CHL00139 rpl18 ribosomal prote 53.0 38 0.00083 25.4 5.0 38 37-74 61-106 (109)
117 cd03822 GT1_ecORF704_like This 52.8 59 0.0013 27.1 6.9 68 106-196 259-331 (366)
118 PRK02649 ppnK inorganic polyph 52.6 69 0.0015 28.3 7.4 21 60-80 78-98 (305)
119 PF01820 Dala_Dala_lig_N: D-al 52.6 17 0.00038 27.2 3.2 36 19-54 1-36 (117)
120 PF01256 Carb_kinase: Carbohyd 52.6 1.1E+02 0.0024 25.9 8.4 124 53-194 2-132 (242)
121 PRK14077 pnk inorganic polypho 52.4 62 0.0013 28.3 7.0 58 18-81 10-95 (287)
122 PRK04183 glutamyl-tRNA(Gln) am 52.1 41 0.00089 31.1 6.1 48 115-165 153-205 (419)
123 cd07062 Peptidase_S66_mccF_lik 51.7 1.2E+02 0.0026 26.5 8.8 43 105-148 52-99 (308)
124 PRK13055 putative lipid kinase 51.6 31 0.00067 30.4 5.1 43 40-83 49-93 (334)
125 PLN02275 transferase, transfer 51.4 1.3E+02 0.0027 26.5 9.0 71 105-196 297-370 (371)
126 PRK09195 gatY tagatose-bisphos 51.3 1.7E+02 0.0037 25.6 11.2 31 105-135 191-221 (284)
127 cd05844 GT1_like_7 Glycosyltra 51.2 65 0.0014 27.4 7.0 67 108-196 258-333 (367)
128 PRK01231 ppnK inorganic polyph 51.0 82 0.0018 27.6 7.6 27 54-81 67-93 (295)
129 PRK12361 hypothetical protein; 50.8 33 0.00071 32.4 5.4 43 39-83 286-329 (547)
130 PF01116 F_bP_aldolase: Fructo 50.8 1.7E+02 0.0037 25.5 10.8 97 32-135 109-224 (287)
131 TIGR01501 MthylAspMutase methy 50.7 1.2E+02 0.0025 23.6 12.7 41 40-81 19-59 (134)
132 PRK09461 ansA cytoplasmic aspa 50.1 47 0.001 29.6 6.0 51 113-165 80-135 (335)
133 PRK05835 fructose-bisphosphate 50.1 1.9E+02 0.004 25.8 11.6 93 33-132 111-220 (307)
134 PRK06756 flavodoxin; Provision 50.0 28 0.00061 26.6 4.1 32 19-53 2-33 (148)
135 PRK07998 gatY putative fructos 49.9 1.8E+02 0.0039 25.5 10.3 93 32-134 110-217 (283)
136 cd03814 GT1_like_2 This family 49.9 48 0.001 27.6 5.8 39 108-154 260-300 (364)
137 TIGR00640 acid_CoA_mut_C methy 49.8 61 0.0013 24.9 5.9 43 37-80 17-59 (132)
138 smart00046 DAGKc Diacylglycero 49.3 40 0.00086 25.2 4.7 31 52-83 52-86 (124)
139 TIGR03449 mycothiol_MshA UDP-N 49.1 85 0.0018 27.5 7.5 41 106-154 294-336 (405)
140 cd03807 GT1_WbnK_like This fam 49.0 56 0.0012 26.9 6.1 65 110-196 264-329 (365)
141 KOG3974 Predicted sugar kinase 48.9 1.5E+02 0.0031 26.2 8.5 48 106-156 93-143 (306)
142 cd03800 GT1_Sucrose_synthase T 48.8 70 0.0015 27.4 6.8 68 108-196 296-365 (398)
143 PF05159 Capsule_synth: Capsul 48.7 18 0.00039 30.6 3.0 38 109-158 194-231 (269)
144 KOG3349 Predicted glycosyltran 48.5 43 0.00092 27.1 4.9 124 18-173 3-130 (170)
145 PLN02958 diacylglycerol kinase 48.5 40 0.00087 31.6 5.6 44 39-83 157-207 (481)
146 PRK14572 D-alanyl-alanine synt 48.3 36 0.00078 30.1 5.0 39 18-56 1-39 (347)
147 cd04949 GT1_gtfA_like This fam 48.0 64 0.0014 27.8 6.5 67 111-197 275-343 (372)
148 TIGR01016 sucCoAbeta succinyl- 48.0 2.1E+02 0.0045 25.7 13.0 70 115-195 311-383 (386)
149 cd03821 GT1_Bme6_like This fam 47.6 1E+02 0.0023 25.4 7.5 40 107-154 274-315 (375)
150 PRK03708 ppnK inorganic polyph 47.3 35 0.00076 29.6 4.7 35 19-56 1-35 (277)
151 COG0252 AnsB L-asparaginase/ar 47.1 35 0.00075 30.9 4.7 34 116-152 102-135 (351)
152 PRK12737 gatY tagatose-bisphos 46.8 2E+02 0.0043 25.2 11.2 95 32-135 110-221 (284)
153 TIGR00253 RNA_bind_YhbY putati 46.5 61 0.0013 23.7 5.1 53 141-195 13-66 (95)
154 cd03819 GT1_WavL_like This fam 46.3 97 0.0021 26.1 7.2 66 108-194 257-325 (355)
155 PLN02586 probable cinnamyl alc 45.7 2E+02 0.0043 25.3 9.3 81 51-134 186-267 (360)
156 PRK13059 putative lipid kinase 45.6 61 0.0013 28.0 5.9 32 115-150 57-88 (295)
157 COG0703 AroK Shikimate kinase 45.5 56 0.0012 26.6 5.3 82 42-125 65-155 (172)
158 PRK01372 ddl D-alanine--D-alan 45.3 36 0.00077 29.1 4.4 37 20-56 6-42 (304)
159 PRK10343 RNA-binding protein Y 45.2 64 0.0014 23.7 5.1 53 141-195 15-68 (97)
160 cd01400 6PGL 6PGL: 6-Phosphogl 45.0 1.3E+02 0.0029 24.8 7.7 43 112-156 20-62 (219)
161 PRK08610 fructose-bisphosphate 44.6 2.2E+02 0.0047 25.0 11.3 95 32-135 113-222 (286)
162 COG1063 Tdh Threonine dehydrog 44.6 63 0.0014 28.6 6.0 29 50-80 170-198 (350)
163 PRK09250 fructose-bisphosphate 44.6 2.4E+02 0.0053 25.5 10.8 113 20-134 164-300 (348)
164 COG0703 AroK Shikimate kinase 44.5 1.2E+02 0.0026 24.6 7.1 33 115-153 72-104 (172)
165 cd00432 Ribosomal_L18_L5e Ribo 43.8 73 0.0016 23.2 5.3 38 37-74 57-102 (103)
166 PRK02649 ppnK inorganic polyph 43.7 55 0.0012 28.9 5.4 118 18-171 1-126 (305)
167 PRK15427 colanic acid biosynth 43.7 1.2E+02 0.0027 27.2 7.8 68 108-196 292-367 (406)
168 PF04016 DUF364: Domain of unk 43.6 28 0.00061 27.2 3.2 76 105-195 53-130 (147)
169 COG0300 DltE Short-chain dehyd 43.5 1E+02 0.0022 26.8 6.9 60 18-85 6-65 (265)
170 PF13614 AAA_31: AAA domain; P 43.5 53 0.0011 24.7 4.7 33 19-54 1-33 (157)
171 TIGR03702 lip_kinase_YegS lipi 43.3 1.7E+02 0.0036 25.1 8.3 31 118-150 55-86 (293)
172 cd07227 Pat_Fungal_NTE1 Fungal 43.2 19 0.00041 31.2 2.4 30 41-72 1-30 (269)
173 PRK06703 flavodoxin; Provision 43.2 32 0.0007 26.3 3.5 32 19-53 2-33 (151)
174 TIGR02919 accessory Sec system 43.1 1.2E+02 0.0027 28.1 7.8 80 97-197 329-409 (438)
175 PRK13057 putative lipid kinase 43.1 54 0.0012 28.0 5.2 42 39-83 40-82 (287)
176 cd07225 Pat_PNPLA6_PNPLA7 Pata 42.9 26 0.00056 30.8 3.2 31 40-72 5-35 (306)
177 cd03798 GT1_wlbH_like This fam 42.8 1.1E+02 0.0023 25.1 6.9 70 106-196 270-341 (377)
178 PRK09880 L-idonate 5-dehydroge 42.8 1.5E+02 0.0033 25.5 8.1 30 165-194 301-331 (343)
179 TIGR00642 mmCoA_mut_beta methy 42.8 59 0.0013 31.7 5.8 46 16-65 544-589 (619)
180 PRK14138 NAD-dependent deacety 42.6 56 0.0012 27.7 5.1 71 105-196 169-240 (244)
181 TIGR02717 AcCoA-syn-alpha acet 42.6 2.8E+02 0.006 25.6 13.6 139 42-196 283-443 (447)
182 cd03823 GT1_ExpE7_like This fa 42.4 1.3E+02 0.0029 24.7 7.4 70 106-196 254-326 (359)
183 PRK07709 fructose-bisphosphate 42.4 2.4E+02 0.0051 24.7 11.4 95 33-135 114-222 (285)
184 PLN02871 UDP-sulfoquinovose:DA 42.2 94 0.002 28.3 6.9 73 106-196 323-397 (465)
185 PRK12359 flavodoxin FldB; Prov 42.1 67 0.0015 25.9 5.3 18 66-83 104-121 (172)
186 PRK08862 short chain dehydroge 42.0 1.3E+02 0.0029 24.5 7.2 54 19-80 6-59 (227)
187 TIGR01182 eda Entner-Doudoroff 41.6 1E+02 0.0022 25.6 6.4 107 18-136 8-119 (204)
188 cd03802 GT1_AviGT4_like This f 41.6 1.3E+02 0.0029 25.0 7.3 39 108-154 237-278 (335)
189 PF01985 CRS1_YhbY: CRS1 / Yhb 41.1 32 0.00068 24.3 2.9 55 139-195 11-66 (84)
190 PRK14077 pnk inorganic polypho 40.8 72 0.0016 27.9 5.6 52 114-171 64-122 (287)
191 PRK09271 flavodoxin; Provision 40.7 39 0.00084 26.4 3.6 31 20-53 2-32 (160)
192 KOG4175 Tryptophan synthase al 40.1 1.3E+02 0.0028 25.6 6.7 33 127-162 78-110 (268)
193 cd01408 SIRT1 SIRT1: Eukaryoti 39.9 80 0.0017 26.6 5.6 70 105-193 166-235 (235)
194 TIGR02699 archaeo_AfpA archaeo 39.6 92 0.002 25.3 5.7 37 114-150 78-121 (174)
195 TIGR00147 lipid kinase, YegS/R 39.6 82 0.0018 26.8 5.8 37 46-83 53-91 (293)
196 PRK13337 putative lipid kinase 39.2 1.9E+02 0.004 25.0 8.0 30 118-150 60-89 (304)
197 PRK14568 vanB D-alanine--D-lac 39.0 56 0.0012 28.8 4.7 36 19-54 4-39 (343)
198 COG2081 Predicted flavoprotein 39.0 29 0.00064 32.0 3.0 27 52-80 6-32 (408)
199 PRK01966 ddl D-alanyl-alanine 38.8 56 0.0012 28.7 4.7 36 19-54 4-39 (333)
200 PRK13937 phosphoheptose isomer 38.5 1E+02 0.0022 24.7 5.9 31 32-62 21-51 (188)
201 cd03812 GT1_CapH_like This fam 38.5 1.3E+02 0.0029 25.2 6.9 70 108-197 260-329 (358)
202 PRK04885 ppnK inorganic polyph 38.4 1.9E+02 0.0041 24.9 7.8 55 20-80 2-67 (265)
203 cd04180 UGPase_euk_like Eukary 38.4 1E+02 0.0023 26.4 6.2 38 117-165 2-43 (266)
204 TIGR01007 eps_fam capsular exo 38.4 84 0.0018 25.1 5.4 37 15-54 14-50 (204)
205 PRK05568 flavodoxin; Provision 38.0 50 0.0011 24.8 3.8 31 19-52 2-32 (142)
206 TIGR01858 tag_bisphos_ald clas 37.8 2.8E+02 0.006 24.3 11.0 95 32-135 108-219 (282)
207 PRK10494 hypothetical protein; 37.3 1.3E+02 0.0028 25.7 6.6 12 114-125 78-89 (259)
208 COG3967 DltE Short-chain dehyd 37.2 41 0.00088 28.7 3.3 25 53-78 9-33 (245)
209 PRK14489 putative bifunctional 37.2 75 0.0016 28.5 5.3 18 180-197 347-364 (366)
210 PRK14571 D-alanyl-alanine synt 37.2 69 0.0015 27.4 4.9 36 20-55 2-37 (299)
211 PF04007 DUF354: Protein of un 37.2 1.9E+02 0.0042 25.8 7.9 62 111-195 245-306 (335)
212 PF00106 adh_short: short chai 37.1 46 0.001 25.1 3.5 29 52-81 3-31 (167)
213 PRK09536 btuD corrinoid ABC tr 37.0 75 0.0016 29.1 5.3 74 61-134 277-358 (402)
214 PRK14046 malate--CoA ligase su 36.8 3.3E+02 0.0071 24.8 14.4 120 49-195 256-383 (392)
215 cd00947 TBP_aldolase_IIB Tagat 36.8 2.9E+02 0.0062 24.1 11.9 96 32-135 105-215 (276)
216 COG4671 Predicted glycosyl tra 36.7 3.1E+02 0.0067 25.3 9.0 76 104-195 284-361 (400)
217 COG2382 Fes Enterochelin ester 36.6 49 0.0011 29.3 3.9 49 113-175 80-131 (299)
218 PF02608 Bmp: Basic membrane p 36.5 59 0.0013 28.1 4.5 58 19-82 162-221 (306)
219 cd03811 GT1_WabH_like This fam 36.5 1.2E+02 0.0026 24.6 6.1 36 111-154 260-297 (353)
220 COG0549 ArcC Carbamate kinase 36.5 78 0.0017 28.1 5.0 28 97-124 208-235 (312)
221 PRK02261 methylaspartate mutas 36.3 2E+02 0.0043 22.1 12.2 41 40-81 21-61 (137)
222 cd03805 GT1_ALG2_like This fam 35.9 1.6E+02 0.0035 25.3 7.2 40 107-154 292-333 (392)
223 TIGR03575 selen_PSTK_euk L-ser 35.9 1.2E+02 0.0026 27.2 6.4 49 144-195 125-174 (340)
224 PF14947 HTH_45: Winged helix- 35.8 47 0.001 22.8 3.0 40 156-196 33-72 (77)
225 TIGR01205 D_ala_D_alaTIGR D-al 35.8 49 0.0011 28.3 3.8 38 20-57 1-38 (315)
226 PTZ00187 succinyl-CoA syntheta 35.8 3.2E+02 0.0069 24.4 10.2 94 101-197 209-313 (317)
227 PRK00861 putative lipid kinase 35.7 96 0.0021 26.6 5.6 30 115-150 58-87 (300)
228 PRK13059 putative lipid kinase 35.7 75 0.0016 27.4 5.0 39 44-83 50-90 (295)
229 PRK11840 bifunctional sulfur c 35.7 3.3E+02 0.0072 24.5 13.2 106 13-136 162-269 (326)
230 PRK12422 chromosomal replicati 35.6 3.1E+02 0.0067 25.4 9.2 104 38-150 121-241 (445)
231 PRK06703 flavodoxin; Provision 35.2 97 0.0021 23.6 5.1 14 66-79 105-118 (151)
232 TIGR00236 wecB UDP-N-acetylglu 35.2 2.1E+02 0.0045 24.9 7.8 33 107-150 267-299 (365)
233 PRK12857 fructose-1,6-bisphosp 34.8 3.1E+02 0.0068 23.9 11.1 31 105-135 191-221 (284)
234 TIGR02690 resist_ArsH arsenica 34.8 66 0.0014 27.1 4.3 48 106-153 82-137 (219)
235 cd00384 ALAD_PBGS Porphobilino 34.7 3.4E+02 0.0073 24.3 9.8 131 31-175 132-284 (314)
236 PRK06806 fructose-bisphosphate 34.7 3.1E+02 0.0067 23.9 14.5 97 31-135 109-220 (281)
237 COG0112 GlyA Glycine/serine hy 34.2 48 0.001 30.6 3.5 42 36-77 290-341 (413)
238 KOG0832 Mitochondrial/chloropl 34.1 1.3E+02 0.0028 25.9 5.8 48 32-79 90-137 (251)
239 PF03492 Methyltransf_7: SAM d 34.1 46 0.001 29.6 3.4 42 154-195 198-242 (334)
240 KOG2683 Sirtuin 4 and related 33.9 67 0.0015 27.9 4.1 42 110-154 242-283 (305)
241 PF04230 PS_pyruv_trans: Polys 33.8 54 0.0012 26.3 3.6 41 113-153 62-108 (286)
242 TIGR03492 conserved hypothetic 33.7 3.6E+02 0.0078 24.3 13.7 32 109-151 291-322 (396)
243 COG0794 GutQ Predicted sugar p 33.7 2.8E+02 0.0061 23.1 10.5 89 41-151 30-120 (202)
244 PF00549 Ligase_CoA: CoA-ligas 33.5 2.4E+02 0.0053 22.3 8.4 50 101-150 58-114 (153)
245 COG1534 Predicted RNA-binding 33.3 1.5E+02 0.0032 22.0 5.4 51 143-195 16-67 (97)
246 TIGR00167 cbbA ketose-bisphosp 33.2 3.3E+02 0.0072 23.8 11.5 30 105-134 195-224 (288)
247 cd06353 PBP1_BmpA_Med_like Per 33.2 1.2E+02 0.0026 25.5 5.8 42 37-81 166-207 (258)
248 PRK02645 ppnK inorganic polyph 33.0 2.5E+02 0.0054 24.6 7.8 29 50-80 59-87 (305)
249 cd02072 Glm_B12_BD B12 binding 32.9 2.3E+02 0.0049 21.8 9.9 41 40-81 17-57 (128)
250 cd03817 GT1_UGDG_like This fam 32.9 2.1E+02 0.0046 23.5 7.2 41 106-154 270-312 (374)
251 PF00710 Asparaginase: Asparag 32.8 1.2E+02 0.0027 26.5 5.9 50 113-164 71-125 (313)
252 TIGR00936 ahcY adenosylhomocys 32.8 1.2E+02 0.0025 28.1 5.9 71 50-130 195-266 (406)
253 CHL00200 trpA tryptophan synth 32.8 2.5E+02 0.0053 24.2 7.6 40 127-170 75-119 (263)
254 TIGR02149 glgA_Coryne glycogen 32.7 1.3E+02 0.0028 25.9 6.0 39 108-154 274-314 (388)
255 PRK06443 chorismate mutase; Va 32.6 81 0.0018 25.8 4.3 42 34-79 91-132 (177)
256 cd00453 FTBP_aldolase_II Fruct 32.5 3.8E+02 0.0082 24.2 11.7 97 32-135 134-261 (340)
257 PRK08887 nicotinic acid mononu 32.5 59 0.0013 26.0 3.5 24 18-41 1-24 (174)
258 TIGR01198 pgl 6-phosphoglucono 32.4 3E+02 0.0064 23.0 8.4 41 113-156 26-66 (233)
259 PLN02496 probable phosphopanto 32.3 1.2E+02 0.0025 25.5 5.3 87 111-197 93-197 (209)
260 PRK11199 tyrA bifunctional cho 32.1 70 0.0015 28.8 4.3 35 12-54 92-126 (374)
261 cd03794 GT1_wbuB_like This fam 32.1 2.9E+02 0.0063 22.7 14.7 72 106-196 286-362 (394)
262 PRK13057 putative lipid kinase 32.0 1.1E+02 0.0024 26.0 5.4 31 114-150 50-80 (287)
263 cd04962 GT1_like_5 This family 31.9 1.5E+02 0.0034 25.1 6.3 38 109-154 265-304 (371)
264 PRK01231 ppnK inorganic polyph 31.7 1E+02 0.0023 26.9 5.2 112 16-171 2-120 (295)
265 TIGR03087 stp1 sugar transfera 31.5 2.1E+02 0.0046 25.2 7.2 65 110-197 293-360 (397)
266 PRK07454 short chain dehydroge 31.3 2.7E+02 0.0058 22.3 7.3 34 16-57 4-37 (241)
267 KOG4175 Tryptophan synthase al 31.3 51 0.0011 28.0 3.0 53 97-149 153-212 (268)
268 COG0256 RplR Ribosomal protein 31.2 1.6E+02 0.0034 22.8 5.5 39 36-74 76-122 (125)
269 PF09314 DUF1972: Domain of un 31.1 99 0.0022 25.3 4.7 36 18-53 1-37 (185)
270 KOG2467 Glycine/serine hydroxy 31.0 60 0.0013 30.0 3.6 37 37-73 328-374 (477)
271 cd01412 SIRT5_Af1_CobB SIRT5_A 30.9 1.6E+02 0.0035 24.3 6.0 67 106-193 156-223 (224)
272 PF12831 FAD_oxidored: FAD dep 30.8 38 0.00082 30.9 2.4 28 52-81 2-29 (428)
273 TIGR01753 flav_short flavodoxi 30.8 1.2E+02 0.0027 22.2 4.9 13 67-79 103-115 (140)
274 PRK07308 flavodoxin; Validated 30.7 67 0.0014 24.4 3.4 29 20-51 3-31 (146)
275 PF13380 CoA_binding_2: CoA bi 30.7 1E+02 0.0023 22.8 4.4 31 19-54 1-31 (116)
276 PRK05333 NAD-dependent deacety 30.7 94 0.002 26.9 4.7 69 105-195 205-275 (285)
277 TIGR01754 flav_RNR ribonucleot 30.7 70 0.0015 24.2 3.5 30 20-52 2-31 (140)
278 TIGR03088 stp2 sugar transfera 30.6 3.5E+02 0.0075 23.2 14.9 66 110-196 268-335 (374)
279 PF00290 Trp_syntA: Tryptophan 30.5 2.8E+02 0.0061 23.9 7.6 50 99-149 147-203 (259)
280 PLN02271 serine hydroxymethylt 30.4 62 0.0014 31.3 3.8 41 37-77 442-492 (586)
281 CHL00200 trpA tryptophan synth 30.3 3E+02 0.0066 23.6 7.8 50 99-149 151-207 (263)
282 PRK14106 murD UDP-N-acetylmura 30.3 1.4E+02 0.003 27.1 5.9 13 112-124 66-78 (450)
283 cd05009 SIS_GlmS_GlmD_2 SIS (S 30.3 2.3E+02 0.005 21.0 7.2 92 39-151 3-96 (153)
284 KOG1201 Hydroxysteroid 17-beta 30.2 65 0.0014 28.6 3.6 26 49-75 38-63 (300)
285 COG1582 FlgEa Uncharacterized 30.2 45 0.00098 22.8 2.0 20 178-197 36-55 (67)
286 PRK00625 shikimate kinase; Pro 30.1 2.1E+02 0.0046 22.8 6.4 78 41-120 65-148 (173)
287 PRK06973 nicotinic acid mononu 29.9 83 0.0018 26.8 4.2 32 18-49 21-52 (243)
288 PF03358 FMN_red: NADPH-depend 29.9 1.2E+02 0.0026 22.8 4.8 48 106-153 62-115 (152)
289 PRK13018 cell division protein 29.7 1.9E+02 0.0042 26.3 6.7 27 56-82 123-150 (378)
290 PRK00481 NAD-dependent deacety 29.7 1.3E+02 0.0028 25.2 5.3 69 106-195 169-238 (242)
291 TIGR02482 PFKA_ATP 6-phosphofr 29.7 1.5E+02 0.0033 26.0 5.9 55 22-80 64-121 (301)
292 cd04240 AAK_UC AAK_UC: Unchara 29.6 3E+02 0.0065 22.5 7.4 46 109-157 85-143 (203)
293 COG0394 Wzb Protein-tyrosine-p 29.5 2E+02 0.0043 22.2 5.9 36 18-57 2-37 (139)
294 PRK13234 nifH nitrogenase redu 29.4 73 0.0016 27.5 3.8 36 15-54 1-36 (295)
295 PRK14076 pnk inorganic polypho 29.3 2.9E+02 0.0063 26.5 8.1 64 13-80 285-378 (569)
296 PHA01630 putative group 1 glyc 29.2 1.4E+02 0.0031 26.2 5.7 43 105-155 200-244 (331)
297 PRK03372 ppnK inorganic polyph 29.1 1.3E+02 0.0027 26.7 5.3 53 113-171 71-130 (306)
298 COG0148 Eno Enolase [Carbohydr 29.1 2.1E+02 0.0046 26.6 6.7 70 105-175 318-387 (423)
299 PF13524 Glyco_trans_1_2: Glyc 29.0 73 0.0016 21.8 3.2 20 179-198 42-61 (92)
300 COG1597 LCB5 Sphingosine kinas 28.9 75 0.0016 27.8 3.8 31 115-150 58-89 (301)
301 PRK05476 S-adenosyl-L-homocyst 28.7 1.6E+02 0.0034 27.4 6.0 86 52-155 215-301 (425)
302 cd04823 ALAD_PBGS_aspartate_ri 28.7 4.3E+02 0.0094 23.7 10.8 131 31-175 137-289 (320)
303 PF12146 Hydrolase_4: Putative 28.5 95 0.0021 21.4 3.6 16 40-55 33-48 (79)
304 PRK13054 lipid kinase; Reviewe 28.5 1.7E+02 0.0037 25.2 6.0 34 115-150 57-90 (300)
305 PF11802 CENP-K: Centromere-as 28.5 1.2E+02 0.0026 26.5 4.9 44 125-172 208-251 (268)
306 PRK01911 ppnK inorganic polyph 28.3 2.9E+02 0.0063 24.1 7.4 30 50-81 66-95 (292)
307 PF00289 CPSase_L_chain: Carba 28.2 2.5E+02 0.0054 20.8 7.5 78 66-170 17-99 (110)
308 PRK14557 pyrH uridylate kinase 28.2 94 0.002 26.5 4.2 43 17-59 3-54 (247)
309 cd06313 PBP1_ABC_sugar_binding 28.2 2.5E+02 0.0054 23.1 6.8 38 110-152 51-88 (272)
310 PF12965 DUF3854: Domain of un 28.2 2.7E+02 0.0059 21.3 7.1 50 18-68 68-124 (130)
311 COG2085 Predicted dinucleotide 28.1 1.4E+02 0.003 25.2 5.0 51 18-79 1-51 (211)
312 PRK06924 short chain dehydroge 28.0 1E+02 0.0022 24.9 4.3 29 18-54 1-29 (251)
313 cd01411 SIR2H SIR2H: Uncharact 28.0 70 0.0015 26.7 3.3 46 105-154 162-207 (225)
314 COG3604 FhlA Transcriptional r 27.9 1.5E+02 0.0032 28.5 5.7 55 106-161 236-291 (550)
315 PLN02929 NADH kinase 27.9 68 0.0015 28.4 3.4 34 113-153 63-96 (301)
316 PLN02591 tryptophan synthase 27.8 3.3E+02 0.0072 23.3 7.5 40 127-170 62-106 (250)
317 PRK14075 pnk inorganic polypho 27.8 2.3E+02 0.005 24.2 6.5 53 19-81 1-69 (256)
318 PRK03708 ppnK inorganic polyph 27.4 3.2E+02 0.007 23.6 7.5 29 50-81 59-87 (277)
319 COG0159 TrpA Tryptophan syntha 27.4 3.1E+02 0.0067 23.9 7.2 58 127-193 77-139 (265)
320 TIGR03201 dearomat_had 6-hydro 27.3 3.5E+02 0.0077 23.3 7.9 30 50-81 168-197 (349)
321 PRK08569 rpl18p 50S ribosomal 27.3 1.5E+02 0.0033 24.6 5.1 39 36-74 79-127 (193)
322 PF04127 DFP: DNA / pantothena 27.2 1.5E+02 0.0033 24.1 5.1 65 51-120 20-88 (185)
323 PF10087 DUF2325: Uncharacteri 27.2 2.3E+02 0.005 20.0 10.4 91 53-165 3-95 (97)
324 PRK02231 ppnK inorganic polyph 27.2 2.1E+02 0.0046 24.8 6.3 50 113-168 41-97 (272)
325 COG0061 nadF NAD kinase [Coenz 27.2 90 0.002 27.0 4.0 47 118-169 58-107 (281)
326 COG1763 MobB Molybdopterin-gua 27.0 1.3E+02 0.0028 24.1 4.6 33 18-54 2-34 (161)
327 TIGR00147 lipid kinase, YegS/R 27.0 2.1E+02 0.0045 24.3 6.2 32 115-151 58-90 (293)
328 PF03205 MobB: Molybdopterin g 26.7 87 0.0019 24.1 3.4 58 19-81 1-64 (140)
329 PRK05867 short chain dehydroge 26.6 3.5E+02 0.0075 21.9 7.3 54 19-80 10-63 (253)
330 PRK11780 isoprenoid biosynthes 26.4 69 0.0015 26.7 3.0 38 19-57 2-40 (217)
331 KOG4321 Predicted phosphate ac 26.4 87 0.0019 25.9 3.5 30 105-134 68-97 (279)
332 TIGR01752 flav_long flavodoxin 26.3 1.7E+02 0.0038 22.8 5.2 20 63-82 100-119 (167)
333 PRK08264 short chain dehydroge 26.2 3.4E+02 0.0073 21.6 7.6 29 51-80 8-37 (238)
334 PTZ00286 6-phospho-1-fructokin 26.2 5.5E+02 0.012 24.1 9.3 33 49-81 88-126 (459)
335 COG2515 Acd 1-aminocyclopropan 26.2 2.3E+02 0.005 25.4 6.3 47 113-162 179-225 (323)
336 PF11834 DUF3354: Domain of un 26.0 1.6E+02 0.0034 20.3 4.2 33 116-154 19-51 (69)
337 PLN02565 cysteine synthase 25.9 4.6E+02 0.0099 23.0 11.2 43 40-83 159-208 (322)
338 KOG1584 Sulfotransferase [Gene 25.7 58 0.0013 28.9 2.5 32 123-164 152-183 (297)
339 PRK13146 hisH imidazole glycer 25.7 2.1E+02 0.0045 23.5 5.7 10 113-122 151-160 (209)
340 COG4098 comFA Superfamily II D 25.5 2.7E+02 0.0059 25.7 6.7 53 33-85 100-155 (441)
341 PRK05866 short chain dehydroge 25.3 2.9E+02 0.0063 23.4 6.8 33 19-59 41-73 (293)
342 COG2022 ThiG Uncharacterized e 25.3 4.5E+02 0.0098 22.8 12.8 120 11-152 93-212 (262)
343 PF13580 SIS_2: SIS domain; PD 25.1 2E+02 0.0044 21.7 5.2 94 32-129 18-118 (138)
344 PRK05920 aromatic acid decarbo 25.0 1.4E+02 0.0031 24.8 4.6 78 114-194 93-182 (204)
345 cd06320 PBP1_allose_binding Pe 25.0 1.3E+02 0.0029 24.5 4.5 33 21-55 2-34 (275)
346 PF00290 Trp_syntA: Tryptophan 25.0 1.2E+02 0.0026 26.2 4.3 41 127-170 70-115 (259)
347 KOG1014 17 beta-hydroxysteroid 24.9 90 0.0019 27.9 3.5 51 15-72 45-95 (312)
348 cd00952 CHBPH_aldolase Trans-o 24.9 4.3E+02 0.0092 23.0 7.9 66 19-85 44-114 (309)
349 PRK06801 hypothetical protein; 24.7 4.7E+02 0.01 22.8 11.7 95 32-134 110-221 (286)
350 COG2242 CobL Precorrin-6B meth 24.7 2.4E+02 0.0051 23.3 5.8 122 39-171 24-153 (187)
351 PRK05569 flavodoxin; Provision 24.7 1.1E+02 0.0023 22.9 3.6 60 112-171 46-112 (141)
352 TIGR03371 cellulose_yhjQ cellu 24.7 1.6E+02 0.0034 24.0 4.9 34 18-54 1-34 (246)
353 PRK07102 short chain dehydroge 24.6 1.3E+02 0.0029 24.2 4.4 31 18-56 1-31 (243)
354 KOG0503 Asparaginase [Amino ac 24.6 1.2E+02 0.0026 27.7 4.3 37 113-152 120-156 (368)
355 PRK15454 ethanol dehydrogenase 24.6 2E+02 0.0044 26.0 5.9 13 113-125 105-117 (395)
356 PRK03378 ppnK inorganic polyph 24.5 2E+02 0.0043 25.1 5.7 52 114-171 63-121 (292)
357 PRK07109 short chain dehydroge 24.5 3.3E+02 0.0071 23.7 7.1 54 19-80 9-62 (334)
358 smart00516 SEC14 Domain in hom 24.4 2.2E+02 0.0048 21.1 5.4 63 127-194 79-145 (158)
359 PRK09860 putative alcohol dehy 24.4 3.1E+02 0.0068 24.6 7.1 13 113-125 87-99 (383)
360 cd04261 AAK_AKii-LysC-BS AAK_A 24.4 2.1E+02 0.0046 23.7 5.7 34 24-58 6-41 (239)
361 PLN02494 adenosylhomocysteinas 24.3 2.7E+02 0.0058 26.4 6.7 72 52-133 257-329 (477)
362 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.3 54 0.0012 25.0 1.9 33 118-150 40-77 (147)
363 PRK02155 ppnK NAD(+)/NADH kina 24.2 1.8E+02 0.0039 25.4 5.3 52 114-171 63-121 (291)
364 PF01320 Colicin_Pyocin: Colic 24.2 1.1E+02 0.0023 22.1 3.2 45 150-198 27-76 (85)
365 PRK10834 vancomycin high tempe 24.1 2.4E+02 0.0052 24.1 5.9 10 115-124 45-54 (239)
366 PRK07677 short chain dehydroge 24.1 1.3E+02 0.0028 24.5 4.3 30 20-57 3-32 (252)
367 PRK14072 6-phosphofructokinase 24.1 2.2E+02 0.0047 26.3 6.0 55 22-80 73-138 (416)
368 cd04260 AAK_AKi-DapG-BS AAK_AK 24.1 1.1E+02 0.0023 25.8 3.8 25 24-48 6-30 (244)
369 cd00763 Bacterial_PFK Phosphof 24.0 2.5E+02 0.0053 24.9 6.2 55 21-80 64-121 (317)
370 PF06819 Arc_PepC: Archaeal Pe 23.8 3.2E+02 0.007 20.6 6.1 54 100-175 54-107 (110)
371 KOG1322 GDP-mannose pyrophosph 23.8 49 0.0011 30.0 1.7 45 115-170 9-54 (371)
372 TIGR00521 coaBC_dfp phosphopan 23.8 2.1E+02 0.0045 26.1 5.9 83 115-197 79-177 (390)
373 PLN02695 GDP-D-mannose-3',5'-e 23.8 81 0.0018 28.0 3.1 42 5-54 8-49 (370)
374 PLN02945 nicotinamide-nucleoti 23.7 2E+02 0.0043 24.1 5.3 40 15-54 18-57 (236)
375 PF00201 UDPGT: UDP-glucoronos 23.6 2.1E+02 0.0045 26.2 5.9 80 99-196 326-406 (500)
376 PF00464 SHMT: Serine hydroxym 23.6 51 0.0011 30.3 1.9 44 36-79 306-359 (399)
377 PF13407 Peripla_BP_4: Peripla 23.6 1.9E+02 0.0042 23.3 5.2 38 111-153 52-89 (257)
378 TIGR02329 propionate_PrpR prop 23.6 6.4E+02 0.014 24.0 11.5 116 37-159 132-278 (526)
379 PRK01911 ppnK inorganic polyph 23.6 1.9E+02 0.0041 25.3 5.3 115 19-171 1-122 (292)
380 PF10727 Rossmann-like: Rossma 23.5 1.2E+02 0.0025 23.2 3.6 27 19-54 11-37 (127)
381 PRK04155 chaperone protein Hch 23.5 77 0.0017 27.7 2.9 16 117-132 149-164 (287)
382 PRK08177 short chain dehydroge 23.4 1.4E+02 0.0031 23.8 4.3 31 19-57 2-32 (225)
383 PRK01185 ppnK inorganic polyph 23.3 1.8E+02 0.004 25.1 5.2 33 20-56 2-34 (271)
384 TIGR02472 sucr_P_syn_N sucrose 23.3 2E+02 0.0044 25.9 5.7 59 116-196 342-403 (439)
385 PRK07102 short chain dehydroge 23.1 1.2E+02 0.0027 24.4 3.9 30 51-81 3-32 (243)
386 PRK05854 short chain dehydroge 23.1 1.3E+02 0.0028 25.9 4.2 20 39-58 27-46 (313)
387 TIGR02418 acolac_catab acetola 23.0 6.2E+02 0.013 23.6 9.7 19 39-57 2-20 (539)
388 cd08184 Fe-ADH3 Iron-containin 23.0 4.2E+02 0.0092 23.6 7.6 12 114-125 81-92 (347)
389 PRK07035 short chain dehydroge 22.9 1.3E+02 0.0028 24.4 4.1 31 19-57 9-39 (252)
390 PRK09426 methylmalonyl-CoA mut 22.9 4.4E+02 0.0094 26.3 8.2 46 35-81 595-640 (714)
391 PF01202 SKI: Shikimate kinase 22.9 1.8E+02 0.0039 22.3 4.7 37 42-80 55-91 (158)
392 TIGR01832 kduD 2-deoxy-D-gluco 22.9 1.3E+02 0.0029 24.2 4.1 31 19-57 6-36 (248)
393 PF05690 ThiG: Thiazole biosyn 22.9 5E+02 0.011 22.4 11.3 119 12-152 87-205 (247)
394 cd06300 PBP1_ABC_sugar_binding 22.9 1.7E+02 0.0036 23.8 4.7 27 21-49 2-28 (272)
395 PRK06180 short chain dehydroge 22.7 1.2E+02 0.0027 25.2 3.9 32 18-57 4-35 (277)
396 PRK08617 acetolactate synthase 22.6 6.4E+02 0.014 23.6 9.9 20 38-57 7-26 (552)
397 PRK04885 ppnK inorganic polyph 22.6 2.2E+02 0.0047 24.6 5.5 53 114-171 35-95 (265)
398 PLN02949 transferase, transfer 22.6 3.1E+02 0.0066 25.5 6.8 43 109-159 349-393 (463)
399 PF04412 DUF521: Protein of un 22.6 6.1E+02 0.013 23.4 14.0 151 16-170 179-348 (400)
400 PRK13111 trpA tryptophan synth 22.5 2.4E+02 0.0052 24.2 5.7 42 127-171 72-118 (258)
401 PF09587 PGA_cap: Bacterial ca 22.4 1.9E+02 0.0041 24.2 5.0 22 38-59 204-225 (250)
402 PRK06194 hypothetical protein; 22.3 4.5E+02 0.0097 21.7 7.4 31 19-57 7-37 (287)
403 cd03792 GT1_Trehalose_phosphor 22.3 4E+02 0.0086 23.0 7.2 41 108-156 267-309 (372)
404 PF01113 DapB_N: Dihydrodipico 22.2 3.3E+02 0.0072 20.1 8.4 51 111-168 64-114 (124)
405 TIGR00520 asnASE_II L-asparagi 22.0 1.3E+02 0.0028 27.1 4.0 34 115-151 106-139 (349)
406 cd03796 GT1_PIG-A_like This fa 21.9 3.5E+02 0.0077 23.7 6.9 40 107-154 262-303 (398)
407 CHL00162 thiG thiamin biosynth 21.8 5.4E+02 0.012 22.5 15.2 105 16-136 105-209 (267)
408 PF02187 GAS2: Growth-Arrest-S 21.8 48 0.001 23.3 1.0 20 114-133 45-64 (73)
409 PRK07775 short chain dehydroge 21.6 4.7E+02 0.01 21.6 7.3 32 18-57 10-41 (274)
410 TIGR03282 methan_mark_13 putat 21.6 3.2E+02 0.007 24.8 6.4 32 51-83 53-84 (352)
411 COG0205 PfkA 6-phosphofructoki 21.6 2.8E+02 0.006 25.1 6.1 55 22-80 67-124 (347)
412 PRK08105 flavodoxin; Provision 21.5 2.1E+02 0.0045 22.1 4.7 18 62-79 103-120 (149)
413 TIGR01127 ilvA_1Cterm threonin 21.4 5.2E+02 0.011 23.0 7.9 22 116-137 307-328 (380)
414 PRK12361 hypothetical protein; 21.3 1.1E+02 0.0025 28.8 3.8 28 118-150 300-327 (547)
415 cd02040 NifH NifH gene encodes 21.3 2E+02 0.0043 23.8 4.9 33 18-54 1-33 (270)
416 PRK00414 gmhA phosphoheptose i 21.3 4E+02 0.0086 21.5 6.5 30 33-62 28-57 (192)
417 PRK08217 fabG 3-ketoacyl-(acyl 21.3 1.5E+02 0.0033 23.7 4.1 30 20-57 7-36 (253)
418 PRK00207 sulfur transfer compl 21.2 2.2E+02 0.0047 21.6 4.7 33 20-53 2-34 (128)
419 PRK04539 ppnK inorganic polyph 21.1 2E+02 0.0043 25.2 5.0 52 114-171 68-126 (296)
420 PRK09355 hydroxyethylthiazole 21.0 91 0.002 26.5 2.8 41 111-155 51-94 (263)
421 TIGR00216 ispH_lytB (E)-4-hydr 20.9 1.4E+02 0.003 26.1 4.0 32 49-80 209-240 (280)
422 PRK06015 keto-hydroxyglutarate 20.9 3.6E+02 0.0077 22.4 6.2 43 37-80 16-60 (201)
423 TIGR01949 AroFGH_arch predicte 20.8 5.1E+02 0.011 21.7 10.5 54 143-196 191-246 (258)
424 PRK09124 pyruvate dehydrogenas 20.8 7.1E+02 0.015 23.4 11.6 17 110-126 261-277 (574)
425 PRK05593 rplR 50S ribosomal pr 20.8 3E+02 0.0064 20.8 5.2 38 37-74 69-114 (117)
426 PRK08327 acetolactate synthase 20.8 7.2E+02 0.016 23.5 11.5 79 38-127 209-292 (569)
427 PF03486 HI0933_like: HI0933-l 20.7 62 0.0013 29.7 1.8 17 52-68 3-19 (409)
428 PRK05993 short chain dehydroge 20.7 1.8E+02 0.004 24.2 4.6 32 15-54 1-32 (277)
429 cd02190 epsilon_tubulin The tu 20.6 4.2E+02 0.0091 24.0 7.1 52 33-84 79-142 (379)
430 PF00995 Sec1: Sec1 family; I 20.6 1.5E+02 0.0033 27.6 4.4 42 115-158 516-557 (564)
431 PRK11096 ansB L-asparaginase I 20.6 1.4E+02 0.003 26.9 4.0 50 113-165 99-153 (347)
432 PF07287 DUF1446: Protein of u 20.6 2.5E+02 0.0055 25.5 5.6 55 29-83 50-108 (362)
433 PF10432 bact-PGI_C: Bacterial 20.4 1.1E+02 0.0024 24.1 3.0 48 33-84 2-55 (155)
434 PF00158 Sigma54_activat: Sigm 20.4 3.4E+02 0.0074 21.4 5.9 48 112-159 18-65 (168)
435 cd03809 GT1_mtfB_like This fam 20.4 4.9E+02 0.011 21.4 11.4 66 108-196 266-333 (365)
436 PRK08339 short chain dehydroge 20.3 1.6E+02 0.0036 24.3 4.2 31 19-57 9-39 (263)
437 PRK06696 uridine kinase; Valid 20.2 3.2E+02 0.0069 22.3 5.9 36 16-55 20-55 (223)
438 TIGR02822 adh_fam_2 zinc-bindi 20.2 1.2E+02 0.0027 26.1 3.5 31 50-82 167-197 (329)
439 cd00578 L-fuc_L-ara-isomerases 20.1 6.7E+02 0.015 22.9 12.4 36 113-153 62-97 (452)
440 PRK09291 short chain dehydroge 20.1 1.5E+02 0.0033 23.9 3.9 31 19-57 3-33 (257)
441 TIGR01019 sucCoAalpha succinyl 20.0 5.9E+02 0.013 22.2 8.5 17 180-196 269-285 (286)
442 PRK10037 cell division protein 20.0 2.2E+02 0.0048 23.6 4.9 34 18-54 1-34 (250)
443 PLN02740 Alcohol dehydrogenase 20.0 2.1E+02 0.0045 25.3 5.0 31 50-82 200-231 (381)
444 PRK07062 short chain dehydroge 20.0 1.6E+02 0.0035 24.0 4.1 31 19-57 9-39 (265)
445 cd06309 PBP1_YtfQ_like Peripla 20.0 2.2E+02 0.0048 23.2 4.9 25 32-56 11-35 (273)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=3.7e-55 Score=356.55 Aligned_cols=178 Identities=46% Similarity=0.834 Sum_probs=170.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCcee
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~ 98 (199)
++|||||||+.+.++.|++.|++||++||++|+.||||||..|+|++++++|+++||.|+||+|..+...+..++.+++.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 48999999999999999999999999999999999999996699999999999999999999999887777777778888
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccc
Q 029078 99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 178 (199)
+++++|++||..|++.||+||++|||+|||+|++++|+|.|++.|+||++++|.+|||+++++|+++++++||++++..+
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCHHHHHHHHHhh
Q 029078 179 IIVSAQTAHELICKLESK 196 (199)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~ 196 (199)
.++++||++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 999999999999999764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=3.9e-45 Score=303.43 Aligned_cols=186 Identities=36% Similarity=0.614 Sum_probs=168.1
Q ss_pred HHhhcccceEEEEcCCCCCCCHH-HHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCC
Q 029078 12 AALKSRFKRVCVFCGSSPGKSPS-YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREI 90 (199)
Q Consensus 12 ~~~~~~~~~I~V~ggs~~~~~~~-~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~ 90 (199)
......+++|||||||+...++. |++.|++||+.||++|+.|++|||+ |+|+|+++||+++||.||||+|......+.
T Consensus 8 ~~~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~ 86 (205)
T COG1611 8 RLLFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEP 86 (205)
T ss_pred hhcccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhcc
Confidence 33445578999999999876666 9999999999999999888888886 999999999999999999999987766553
Q ss_pred CCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCC--CCcEEEEecCCcchHHHHHHH-HHH
Q 029078 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIH--DKPVGLLNVDGYYNSLLSFID-KAV 167 (199)
Q Consensus 91 ~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~--~kPvvll~~~g~w~~l~~~l~-~~~ 167 (199)
.+...++++++.+|++||..|+++||+||++|||+||++|++++|+|.|++.+ .+|.++++.++||+++.+|++ +++
T Consensus 87 ~~~~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i 166 (205)
T COG1611 87 PNYEVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLI 166 (205)
T ss_pred CccccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHH
Confidence 44456788999999999999999999999999999999999999999999987 788888999999999999998 899
Q ss_pred HcCCCCcccccceEEcCCHHHHHHHHHhhhc
Q 029078 168 DEGFIAPAARYIIVSAQTAHELICKLESKAV 198 (199)
Q Consensus 168 ~~g~i~~~~~~~i~~~~d~ee~~~~l~~~~~ 198 (199)
.++++++...+++.++||++++++.+.++..
T Consensus 167 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (205)
T COG1611 167 VEGLISEADRELLIVVDDAEEAIDAILKYLP 197 (205)
T ss_pred HhhcCChhhhhheeeecCHHHHHHHHHHhcc
Confidence 9999999999999999999999999987753
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=2.5e-42 Score=276.55 Aligned_cols=157 Identities=26% Similarity=0.396 Sum_probs=134.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~ 97 (199)
|++|||||||+ .++.|++.|++||++||++|+.|||||+. |+|++++++|+++||.||||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~--~~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSN--KSEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCC--CChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 57899999887 47899999999999999999999998875 99999999999999999999998663 2334444
Q ss_pred ee-ecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccc
Q 029078 98 VK-AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAA 176 (199)
Q Consensus 98 ~~-~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~ 176 (199)
+. ....+++||++|++.||+||++|||+|||+|++++|+ ++|||+++|.+|||+++++++ +.+.+|++ +
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~------~~kpv~~l~~~g~~~~~l~~~--~~~~~~~~-~- 143 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYA------LGGPVVVLRGTGGWTDRLSQV--LIEGVYLD-E- 143 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHH------cCCCEEEEECCCcchHHHHHH--Hhcccccc-c-
Confidence 44 4444488999999999999999999999999999998 789999999999999988864 44444444 2
Q ss_pred ccceEEcCCHHHHHHHH
Q 029078 177 RYIIVSAQTAHELICKL 193 (199)
Q Consensus 177 ~~~i~~~~d~ee~~~~l 193 (199)
.+.+++|++|+++.+
T Consensus 144 --~~~~~~~~~e~~~~~ 158 (159)
T TIGR00725 144 --RVIVEITPAEAVKLA 158 (159)
T ss_pred --eeEecCCHHHHHHhh
Confidence 699999999999865
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=100.00 E-value=2.5e-39 Score=251.98 Aligned_cols=131 Identities=42% Similarity=0.743 Sum_probs=124.3
Q ss_pred hHHHHHHHHhcCCeEEEEeCCCCCC-CCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcC
Q 029078 63 MGLVSQAVYDGGRHVLGVIPKTLMP-REITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG 141 (199)
Q Consensus 63 M~a~a~gA~~~gg~viGv~P~~~~~-~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~ 141 (199)
|+|+++||+++||.|+||+|+...+ ++..++.+++++.+++|++||..|+++||+||++|||+|||+|++++|+|.|++
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999888 666677788899999999999999999999999999999999999999999999
Q ss_pred CCCC-cEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHH
Q 029078 142 IHDK-PVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (199)
Q Consensus 142 ~~~k-Pvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (199)
.++| |++|+|.+|||+++++|+++++++||++++..+.++++||++|+++.|
T Consensus 81 ~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 81 RHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred cccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 8777 999999999999999999999999999999999999999999999976
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.66 E-value=8.3e-15 Score=123.11 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=116.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCC---CCCCC----
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREIT---- 91 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~---~~e~~---- 91 (199)
+.|+|. |++.. ++.-.+.|+++++.|+++|+.||+|++. |+|.++.++|+++||.+|+|+|..+. |.+..
T Consensus 45 ~~iaIv-GsR~~-s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIV-GTRRP-TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEE-cCCCC-CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 579999 56644 5566788999999999999999999986 99999999999999999999987652 22100
Q ss_pred ---CCC---Cce-----eeecCCHHHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 029078 92 ---GDT---VGE-----VKAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (199)
Q Consensus 92 ---~~~---~~~-----~~~~~~m~~R~~~~v~~sDa~IvlpGG--~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~ 158 (199)
.+. +.+ ......|..|++++...||++|++..+ .||+.++-.++. .+|||+++-. ..+++
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~------~gr~v~~~pg-~~~~~ 194 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALE------QGREVFAYPG-DLNSP 194 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHH------hCCcEEEEcC-CCCCc
Confidence 000 011 112345689999999999999999987 699999988876 5899999843 35565
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 029078 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 192 (199)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 192 (199)
..+.-..|+.+|. ..+.+++|+++.
T Consensus 195 ~~~G~~~Li~~GA---------~~i~~~~d~~~~ 219 (220)
T TIGR00732 195 ESDGCHKLIEQGA---------ALITSAKDILET 219 (220)
T ss_pred cchHHHHHHHCCC---------EEECCHHHHHHh
Confidence 5555667777762 235778887764
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.32 E-value=3.2e-11 Score=100.82 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=87.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCC---CCCCC---
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM---PREIT--- 91 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~---~~e~~--- 91 (199)
.+.|+|. ||+.. ++.-.+.|+++++.|+++|+.||+|+.. |+..++.++|+++||.+|+|+|..+. |.+..
T Consensus 44 ~~~iaIv-GsR~~-s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIV-GSRNP-SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE---SS---HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEE-cCCCC-CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 4689999 56654 6677899999999999999999999986 99999999999999999999987652 32210
Q ss_pred -----CCCC-------ceeeecCCHHHHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcch
Q 029078 92 -----GDTV-------GEVKAVSGMHQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYN 157 (199)
Q Consensus 92 -----~~~~-------~~~~~~~~m~~R~~~~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~ 157 (199)
.+.+ ..-.....|..|++++...||++|++-- ..||+.-+-.++. .+|||+++.. ..++
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~------~gr~v~~vp~-~~~~ 193 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALE------QGRPVFAVPG-PIDD 193 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHH------HT--EEE-----TT-
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHH------cCCeEEEEeC-CCCC
Confidence 1100 1112234567999999999999999874 4599988887776 5799998733 3666
Q ss_pred HHHHHHHHHHHcC
Q 029078 158 SLLSFIDKAVDEG 170 (199)
Q Consensus 158 ~l~~~l~~~~~~g 170 (199)
+..+.-..++++|
T Consensus 194 ~~~~G~~~Li~~G 206 (212)
T PF02481_consen 194 PNSEGNNELIKEG 206 (212)
T ss_dssp GGGHHHHHHHHTT
T ss_pred cccHHHHHHHHcC
Confidence 6666666777776
No 7
>PRK10736 hypothetical protein; Provisional
Probab=99.23 E-value=5.9e-10 Score=100.27 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC---CCCCC-----
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPREI----- 90 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~---~~~e~----- 90 (199)
+.|+|. |||.. ++.-.+.++.+++.|+++|+.||+|+.. |+..++.++|+++||.+|+|++..+ .|.+.
T Consensus 108 ~~iaiV-GsR~~-s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVV-GSRAH-SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEE-CCCCC-CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 579999 56653 5566788999999999999999999986 9999999999999999999987544 23221
Q ss_pred ---CCCCC--ce-----eeecCCHHHHHHHHHHhcCEEEEecCC--cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 029078 91 ---TGDTV--GE-----VKAVSGMHQRKAEMARQADAFIALPGG--YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (199)
Q Consensus 91 ---~~~~~--~~-----~~~~~~m~~R~~~~v~~sDa~IvlpGG--~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~ 158 (199)
..+.+ .| -....+|..||+++...|+++||+--+ .|||.=.-.++. .+|+|+.+-+ ...++
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~------~gR~VfavPG-~i~~~ 257 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALE------QGRDVFALPG-PIGNP 257 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHH------hCCeEEEEcC-CCCCc
Confidence 00100 11 112356789999999999999998754 488876666665 6899998832 35555
Q ss_pred HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHH
Q 029078 159 LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (199)
Q Consensus 159 l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (199)
...-..+++.+|. ..+.+++|+++.+
T Consensus 258 ~s~G~n~LI~~GA---------~lv~~~~Di~~~l 283 (374)
T PRK10736 258 GSEGPHWLIKQGA---------YLVTSPEDILENL 283 (374)
T ss_pred cchhHHHHHHCCC---------EEeCCHHHHHHHh
Confidence 5555556666662 2456677777666
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.02 E-value=1.3e-08 Score=90.95 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=102.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC---CCCCC-----
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL---MPREI----- 90 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~---~~~e~----- 90 (199)
+.|+|. |||.. +..-.+.++.+++.|+++|+++|+|+.. |+..++.++|++++|.+|+|+...+ .|++.
T Consensus 112 ~~vaIV-GsR~~-S~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIV-GSRKP-SKYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEE-eCCCC-CHhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 589999 56654 5556789999999999999999999986 9999999999999999999987544 23221
Q ss_pred --CCCC-------CceeeecCCHHHHHHHHHHhcCEEEEecCCc--CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 029078 91 --TGDT-------VGEVKAVSGMHQRKAEMARQADAFIALPGGY--GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 159 (199)
Q Consensus 91 --~~~~-------~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~--GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l 159 (199)
..+. ...-....+|..||+++...||++||+-.+. |+|.=.-.++. .++.|+.+-++ ..++-
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Ale------qgR~VfavPg~-~~~~~ 261 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALE------QGRDVFAVPGS-IDNPR 261 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHH------cCCeeEEcCCC-ccccc
Confidence 0110 1112234578999999999999999998775 88877766666 67888776433 32322
Q ss_pred HHHHHHHHHcC
Q 029078 160 LSFIDKAVDEG 170 (199)
Q Consensus 160 ~~~l~~~~~~g 170 (199)
..=-..++.+|
T Consensus 262 s~G~~~LI~~G 272 (350)
T COG0758 262 SEGCNKLIKEG 272 (350)
T ss_pred ccchHHHHHcc
Confidence 22223355555
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=97.24 E-value=0.0074 Score=47.69 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=52.3
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC-CCCCc-eeeecCCHHHHHHHHHHhcCEEEEecCCc---Cc
Q 029078 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT-GDTVG-EVKAVSGMHQRKAEMARQADAFIALPGGY---GT 127 (199)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~-~~~~~-~~~~~~~m~~R~~~~v~~sDa~IvlpGG~---GT 127 (199)
||+||- .|+..|+-+.|+++|-..=|-.|......+.. +..|. ......++..|.+..++.||+-++|-=|. ||
T Consensus 1 IiSGGQ-TGvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQ-TGVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE-----TTHHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCcc-ccHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 688886 59999999999999988888888655433322 12221 22345778999999999999977766443 55
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 128 LEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 128 l~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
..=+..+ ..+.||+.+++..
T Consensus 80 ~lT~~~a------~~~~KP~l~i~~~ 99 (145)
T PF12694_consen 80 ALTVEFA------RKHGKPCLHIDLS 99 (145)
T ss_dssp HHHHHHH------HHTT--EEEETS-
T ss_pred HHHHHHH------HHhCCCEEEEecC
Confidence 3222222 2378999988554
No 10
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=95.80 E-value=0.025 Score=42.12 Aligned_cols=46 Identities=37% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhcCEEEEecCC----cCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 102 SGMHQRKAEMARQADAFIALPGG----YGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 102 ~~m~~R~~~~v~~sDa~IvlpGG----~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
....+|....++.||++|+.-.+ .||.-|+..++. .+|||+++..+
T Consensus 49 ~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a------lgkpv~~~~~d 98 (113)
T PF05014_consen 49 REIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYA------LGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHH------TTSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHH------CCCEEEEEEcC
Confidence 34478888899999998887776 799999999987 68999998654
No 11
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.62 E-value=0.28 Score=50.60 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=92.4
Q ss_pred ceEEEEcCCCCCC-CHHHHHHHHH-HHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCC-----e--EEEEeCCCCC---
Q 029078 19 KRVCVFCGSSPGK-SPSYQLAAIQ-LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGR-----H--VLGVIPKTLM--- 86 (199)
Q Consensus 19 ~~I~V~ggs~~~~-~~~~~~~A~~-lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg-----~--viGv~P~~~~--- 86 (199)
..|+|-||...-. .|.+.+.-++ |-+..-..|-=|+|||-..|+|.-+..++++++- + +|||-|-...
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~~~s~~~~ivaiGiApWGvv~nr 198 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHSLASSGGKIVAIGIAPWGIVKNR 198 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhccchhccCceEEEeeccceeeech
Confidence 4799999876554 4555433333 2223333799999999999999999999998742 3 3676553221
Q ss_pred --------CCCC-----CCC-------CCceeeecCC---------HHHHHHH--HHHh----cC-------EEEEecCC
Q 029078 87 --------PREI-----TGD-------TVGEVKAVSG---------MHQRKAE--MARQ----AD-------AFIALPGG 124 (199)
Q Consensus 87 --------~~e~-----~~~-------~~~~~~~~~~---------m~~R~~~--~v~~----sD-------a~IvlpGG 124 (199)
+..+ +.+ .....+.+++ ..-|+++ -+.. +. +.+++.||
T Consensus 199 ~~lI~~d~~~~Y~~~~~~~~~L~~Ln~nhShFiLvDnGTvGkygae~~lR~~LEk~Is~q~~~~~~~~~iPvvc~v~eGg 278 (1381)
T KOG3614|consen 199 DDLIGGDFTVSYQTDDNPLNKLTILNNNHSHFILVDNGTVGKYGAETKLRLRLEKYISLQKINSGGTGKIPVVCLVLEGG 278 (1381)
T ss_pred hhhccCCcceeeeecCCCCcceeeccCCCceeEEecCCccCccchHHHHHHhchhhHhhhccCCCCCCccceEEEEecCC
Confidence 1110 001 1111222211 1233322 1111 11 57889999
Q ss_pred cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcccc
Q 029078 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAAR 177 (199)
Q Consensus 125 ~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~-~~~~g~i~~~~~ 177 (199)
.+|+.=|.+..+ ...+.|++++.++|--.++++++-+ ....|.++....
T Consensus 279 ~nti~~I~~~v~----~~~~iPvvVc~GSGraADilA~~~~~~~~~g~l~~~~~ 328 (1381)
T KOG3614|consen 279 PNTLAIILDYVT----DKPPIPVVVCAGSGRAADILAFAHEEHGAPGILSDAER 328 (1381)
T ss_pred chHHHHHHHHhc----cCCCCceEEEcCCchHHHHHHHHHHhhcCCCcccHHHH
Confidence 999988876554 1235699999998888888888754 555566565533
No 12
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=95.30 E-value=0.56 Score=40.13 Aligned_cols=124 Identities=24% Similarity=0.227 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCc
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGT 127 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~gg-~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GT 127 (199)
..+.+||=||. |.- .+.+.+.+..+ .++-+-|... +.....+ .+.... ...-.-++..||++|.- ||++|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~~---~~~~~ni-~~~~~~--~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNAA---DPRPGNI-HVRPFS--TPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCcc---cccCCCE-EEeecC--hHHHHHHHHhCCEEEEC-CCHHH
Confidence 56778886653 555 55565555554 3333322211 1111211 122111 12223346889988776 88999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEE-cCCHHHHHHHHHhh
Q 029078 128 LEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS-AQTAHELICKLESK 196 (199)
Q Consensus 128 l~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~-~~d~ee~~~~l~~~ 196 (199)
+.|+.. .++|++++-..++++.... .+.+.+.|.... +.. .-+++.+.++|++.
T Consensus 263 ~~Ea~~---------~g~P~l~ip~~~~~EQ~~~-a~~l~~~G~~~~-----~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 263 ISEALA---------LGKPALVIPRPGQDEQEYN-ARKLEELGLGIV-----LSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHH---------cCCCEEEEeCCCCchHHHH-HHHHHHCCCeEE-----cccccCCHHHHHHHHhcC
Confidence 988863 5899999976666665433 244555554321 111 12788888888764
No 13
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.31 E-value=1.5 Score=38.40 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=85.9
Q ss_pred hcccceEEEEcCCCCCC----CHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE-eCCCCCCCC
Q 029078 15 KSRFKRVCVFCGSSPGK----SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV-IPKTLMPRE 89 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~----~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv-~P~~~~~~e 89 (199)
+...+.|+|+-|...+. ++...+.|..+-+.+.+.|+.++-.-.+ =-.+.+..--..+=-.+-|+ -|+.+
T Consensus 158 p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSR-RTp~~~~s~l~~~l~s~~~i~w~~~d---- 232 (329)
T COG3660 158 PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSR-RTPDTVKSILKNNLNSSPGIVWNNED---- 232 (329)
T ss_pred CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeec-CCcHHHHHHHHhccccCceeEeCCCC----
Confidence 55567899988776663 3344455555566666678887766554 44444443333321222333 23221
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCc-chHHHHHHHHHHH
Q 029078 90 ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY-YNSLLSFIDKAVD 168 (199)
Q Consensus 90 ~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~-w~~l~~~l~~~~~ 168 (199)
...|+|. -|+..+|++|+---++.-..|.. + .+|||.++-.+++ -+.+.-|++.+++
T Consensus 233 ~g~NPY~-------------~~La~Adyii~TaDSinM~sEAa---s------TgkPv~~~~~~~~~s~K~r~Fi~~L~e 290 (329)
T COG3660 233 TGYNPYI-------------DMLAAADYIISTADSINMCSEAA---S------TGKPVFILEPPNFNSLKFRIFIEQLVE 290 (329)
T ss_pred CCCCchH-------------HHHhhcceEEEecchhhhhHHHh---c------cCCCeEEEecCCcchHHHHHHHHHHHH
Confidence 2344442 35688999999888887777665 2 5899999988888 6778888888888
Q ss_pred cCCCCcccc
Q 029078 169 EGFIAPAAR 177 (199)
Q Consensus 169 ~g~i~~~~~ 177 (199)
++..++-..
T Consensus 291 q~~AR~f~~ 299 (329)
T COG3660 291 QKIARPFEG 299 (329)
T ss_pred hhhccccCc
Confidence 776665444
No 14
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=94.22 E-value=1.3 Score=34.69 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCEEEEecCCc----CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccce
Q 029078 105 HQRKAEMARQADAFIALPGGY----GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~----GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (199)
..|.+.+++.||.+|+.-|-- .|--....+.+ .+||+|++.....--+|.+. + ....
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEv-d------------a~A~ 123 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEV-D------------AAAL 123 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHH-h------------HhhH
Confidence 588999999999999987742 23222222332 58999999877666676663 1 1224
Q ss_pred EEcCCHHHHHHHHH
Q 029078 181 VSAQTAHELICKLE 194 (199)
Q Consensus 181 ~~~~d~ee~~~~l~ 194 (199)
.++++|+++++.|+
T Consensus 124 a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 124 AVAETPEQVVEILR 137 (141)
T ss_pred hhhCCHHHHHHHHH
Confidence 57899999999775
No 15
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=93.52 E-value=4.4 Score=34.79 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
-++..||++|. ++|..|+-|.. . .++|++..+..
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~Ea~---~------~g~Pvv~~~~~ 279 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAELA---A------AGVPAILIPYP 279 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHHHH---H------cCCCEEEeeCC
Confidence 46788999886 45555665554 3 68999997654
No 16
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=92.92 E-value=1.8 Score=35.31 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHH---HHhCCCeEEEcCCCcChhHHHHHHHHhcC-----CeEEEEeCCCCCCCCCCCC----------
Q 029078 32 SPSYQLAAIQLGKQ---LVERNIDLVYGGGSIGLMGLVSQAVYDGG-----RHVLGVIPKTLMPREITGD---------- 93 (199)
Q Consensus 32 ~~~~~~~A~~lG~~---lA~~G~~lv~GGg~~GlM~a~a~gA~~~g-----g~viGv~P~~~~~~e~~~~---------- 93 (199)
+|.+...-..|-+. +-++|++-+.-||.-|+---++..+++.- -+.+-++|=..........
T Consensus 21 ~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~q~~~W~~~~q~~y~~il~ 100 (177)
T PF06908_consen 21 DPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFENQGNNWNEANQERYQSILE 100 (177)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-TTTTS-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccchhhcCCHHHHHHHHHHHH
Confidence 55554444455443 34578876544445699999999888853 3445556643222211100
Q ss_pred CCceeeec--------CCHHHHHHHHHHhcCEEEEec
Q 029078 94 TVGEVKAV--------SGMHQRKAEMARQADAFIALP 122 (199)
Q Consensus 94 ~~~~~~~~--------~~m~~R~~~~v~~sDa~Ivlp 122 (199)
..+..... .-|..|++.|+++||.+|++=
T Consensus 101 ~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavy 137 (177)
T PF06908_consen 101 QADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVY 137 (177)
T ss_dssp H-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE-
T ss_pred hCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEE
Confidence 01122211 235799999999999888774
No 17
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=92.73 E-value=3.5 Score=32.35 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCEEEEecCCc-CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 105 HQRKAEMARQADAFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~-GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
..|-+.+++.||.+|+.-|-- =-.+-.|.+=... ..+||+|++.....--+|.+. +. ....++
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aa---AlgKplI~lh~~~~~HpLKEv-da------------aA~ava 129 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAA---ALGKPLIILRPEELIHPLKEV-DN------------KAQAVV 129 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHH---HcCCCeEEecchhccccHHHH-hH------------HHHHHh
Confidence 578899999999999987742 2223233221111 158999999777666666663 11 124478
Q ss_pred CCHHHHHHHHH
Q 029078 184 QTAHELICKLE 194 (199)
Q Consensus 184 ~d~ee~~~~l~ 194 (199)
++|+++++.|+
T Consensus 130 etp~Qvv~iL~ 140 (144)
T TIGR03646 130 ETPEQAIETLK 140 (144)
T ss_pred cCHHHHHHHHH
Confidence 99999999775
No 18
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=92.25 E-value=2.9 Score=37.00 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 170 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g 170 (199)
.++..+|+|| -.||.||..|... +++|++++-. +.|. ..+.+.+.+.|
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~~P~--~~dQ-~~~a~~~~~~G 347 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLVVPF--FGDQ-PFWAARVAELG 347 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEeeCC--CCCc-HHHHHHHHHCC
Confidence 3467799887 6677899888763 6899999832 2332 23345566666
No 19
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=91.84 E-value=8.5 Score=33.87 Aligned_cols=71 Identities=24% Similarity=0.193 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
.....++..||++|.-+|| .|+.|. +. .++|+|+++..+-++. +-.+.+.+.|+ .+...|
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~EA---~a------~g~PvI~~~~~~g~~~--~n~~~~~~~G~--------~~~~~~ 324 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLSEA---AA------LGVPVILYKPVPGQEK--ENAMYFERKGA--------AVVIRD 324 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHHHH---HH------hCCCEEECCCCCCcch--HHHHHHHhCCc--------EEEECC
Confidence 3444567899998865554 465554 44 5899988753221211 11112333333 334567
Q ss_pred HHHHHHHHHhh
Q 029078 186 AHELICKLESK 196 (199)
Q Consensus 186 ~ee~~~~l~~~ 196 (199)
++++.+.|.+.
T Consensus 325 ~~~l~~~i~~l 335 (380)
T PRK13609 325 DEEVFAKTEAL 335 (380)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 20
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=91.46 E-value=2.3 Score=29.45 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=44.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVER-NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~-G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
+|.| +|++.-.|-. ..-..|-+.+++. ...||+||.+.|.-..+.+=|.+.|-.++-+-|+
T Consensus 5 rVli-~GgR~~~D~~--~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ad 66 (71)
T PF10686_consen 5 RVLI-TGGRDWTDHE--LIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPAD 66 (71)
T ss_pred EEEE-EECCccccHH--HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcC
Confidence 4544 5666654433 3445577777775 6678999985699999999999998888877655
No 21
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=91.32 E-value=11 Score=34.04 Aligned_cols=79 Identities=19% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc--hHHHHHHHHHHHcCCCCcccccc
Q 029078 102 SGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY--NSLLSFIDKAVDEGFIAPAARYI 179 (199)
Q Consensus 102 ~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w--~~l~~~l~~~~~~g~i~~~~~~~ 179 (199)
..|.......+..||.+|.=+| ..|+.|++. .++|.|++-.. ++ ++=..-.+.+.+.|...-
T Consensus 240 ~~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~p-~~~~~~Q~~NA~~l~~~gaa~~----- 303 (357)
T COG0707 240 LPFIDDMAALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPYP-PGADGHQEYNAKFLEKAGAALV----- 303 (357)
T ss_pred eeHHhhHHHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCCC-CCccchHHHHHHHHHhCCCEEE-----
Confidence 3444445566788998776655 589999974 47999998433 44 121111234555554221
Q ss_pred eEEcC-CHHHHHHHHHhh
Q 029078 180 IVSAQ-TAHELICKLESK 196 (199)
Q Consensus 180 i~~~~-d~ee~~~~l~~~ 196 (199)
+.-.+ +++++.+.|.+.
T Consensus 304 i~~~~lt~~~l~~~i~~l 321 (357)
T COG0707 304 IRQSELTPEKLAELILRL 321 (357)
T ss_pred eccccCCHHHHHHHHHHH
Confidence 11111 356777666654
No 22
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=91.31 E-value=0.87 Score=35.58 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc-hHHHHHHHHHHHcCC
Q 029078 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY-NSLLSFIDKAVDEGF 171 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w-~~l~~~l~~~~~~g~ 171 (199)
..++..|| +|+--||.||+.|+.. .++|.|++-..+.. +.-....+.+.+.|.
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ip~~~~~~~~q~~na~~~~~~g~ 120 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIVIPLPGAADNHQEENAKELAKKGA 120 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEEE--TTT-T-CHHHHHHHHHHCCC
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeeccCCCCcchHHHHHHHHHHHHcCC
Confidence 34578899 6777788999988864 68999887332212 122222334566554
No 23
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.02 E-value=9.3 Score=32.78 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
..-..++..||++|. ++|..|+.|. +. .++|++....
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t~~Ea---m~------~G~Pvv~~~~ 280 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGASTVAEL---AA------LGLPAILIPL 280 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhHHHHH---HH------hCCCEEEeec
Confidence 344556789999885 5555665554 44 6899998754
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=90.97 E-value=5.5 Score=35.36 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=24.3
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
.++..||++| ..||.||+.|... +++|++++-
T Consensus 287 ~ll~~~~~~I-~hgG~~t~~Eal~---------~G~P~v~~p 318 (392)
T TIGR01426 287 EILKKADAFI-THGGMNSTMEALF---------NGVPMVAVP 318 (392)
T ss_pred HHHhhCCEEE-ECCCchHHHHHHH---------hCCCEEecC
Confidence 3457888554 6889999888753 689999974
No 25
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.75 E-value=2.1 Score=37.57 Aligned_cols=32 Identities=34% Similarity=0.269 Sum_probs=23.3
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
..++..||++|. ++|..|+ |.. . .++|+++..
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea~---a------~G~PvI~~~ 287 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-ELA---L------LKVPMVVGY 287 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HHH---H------hCCCEEEEE
Confidence 456789998887 6677776 663 2 589998763
No 26
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=90.67 E-value=5.3 Score=34.32 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
..-.-++..||.+|. .|| +|+.|+.. .++|++++-.
T Consensus 233 ~~m~~lm~~aDl~Is-~~G-~T~~E~~a---------~g~P~i~i~~ 268 (279)
T TIGR03590 233 ENMAELMNEADLAIG-AAG-STSWERCC---------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHHCCEEEE-CCc-hHHHHHHH---------cCCCEEEEEe
Confidence 344556789999999 566 89888763 5899998743
No 27
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=90.63 E-value=11 Score=33.40 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 029078 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (199)
Q Consensus 107 R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (199)
.-..++..||++|.-+| .+|+.|. +. .++|+|+.+.-. ....-+ .+.+.+.|. -..+.|+
T Consensus 275 ~~~~l~~aaDv~V~~~g-~~ti~EA---ma------~g~PvI~~~~~p-gqe~gn-~~~i~~~g~--------g~~~~~~ 334 (382)
T PLN02605 275 NMEEWMGACDCIITKAG-PGTIAEA---LI------RGLPIILNGYIP-GQEEGN-VPYVVDNGF--------GAFSESP 334 (382)
T ss_pred cHHHHHHhCCEEEECCC-cchHHHH---HH------cCCCEEEecCCC-ccchhh-HHHHHhCCc--------eeecCCH
Confidence 34566799999997555 4786665 44 689999986310 000001 122333332 1234788
Q ss_pred HHHHHHHHhh
Q 029078 187 HELICKLESK 196 (199)
Q Consensus 187 ee~~~~l~~~ 196 (199)
+++.+.|.+.
T Consensus 335 ~~la~~i~~l 344 (382)
T PLN02605 335 KEIARIVAEW 344 (382)
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 28
>PRK10565 putative carbohydrate kinase; Provisional
Probab=90.62 E-value=1.5 Score=41.42 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCCeEEEcCCCcChhHH---HHHHHHhcC-CeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCC
Q 029078 49 RNIDLVYGGGSIGLMGL---VSQAVYDGG-RHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGG 124 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a---~a~gA~~~g-g~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG 124 (199)
+|+.+|.||.. +.++| ++++|++.| |.|.-+.|....+. .....-++++.+...+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~~--~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIAP--LLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHHH--HhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 68999999965 66666 567777776 55555556532111 011112333222111212233477899887776
Q ss_pred cCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 125 ~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
.|+-++...++.. +...++|+|| +.++
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~VL-DAda 356 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPMLW-DADA 356 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCEEE-EchH
Confidence 6775555443322 2235689755 7776
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=89.86 E-value=14 Score=32.89 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.++..||++|. -||.+|+.|+.. .++|.+++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~~---------~g~P~I~i 278 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFLT---------LQKPMLLI 278 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHHH---------cCCCEEEE
Confidence 46789995555 556678888863 68999998
No 30
>PRK13660 hypothetical protein; Provisional
Probab=89.48 E-value=11 Score=31.04 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=54.2
Q ss_pred hCCCeEEEcCCCcChhHHHHHHHHhc----C-CeEEEEeCCCCCCCCCCC----------CCCcee--e-e-----cCCH
Q 029078 48 ERNIDLVYGGGSIGLMGLVSQAVYDG----G-RHVLGVIPKTLMPREITG----------DTVGEV--K-A-----VSGM 104 (199)
Q Consensus 48 ~~G~~lv~GGg~~GlM~a~a~gA~~~----g-g~viGv~P~~~~~~e~~~----------~~~~~~--~-~-----~~~m 104 (199)
+.|+.-+.-||.-|+---++.-|++. . -+.+-++|=......... ...+.+ + . +.-|
T Consensus 40 e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~ 119 (182)
T PRK13660 40 EEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFEEHGENWNEANQEKLANILKQADFVKSISKRPYESPAQF 119 (182)
T ss_pred HCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHH
Confidence 36776654444569988888888775 2 245555663221111100 011111 1 1 1127
Q ss_pred HHHHHHHHHhcCEEEEecCC---cCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 105 HQRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG---~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
..|++.|+++||.+|++=-| .||---+-. +..+-..++.||.+++
T Consensus 120 ~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~--A~k~~~~~~y~i~~I~ 167 (182)
T PRK13660 120 RQYNQFMLEHTDGALLVYDEENEGSPKYFYEA--AKKKQEKEDYPLDLIT 167 (182)
T ss_pred HHHHHHHHHccCeEEEEEcCCCCCChHHHHHH--HHHhhhccCceEEEeC
Confidence 89999999999988876432 234322211 1112223578888874
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=86.19 E-value=21 Score=30.85 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=35.6
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCC
Q 029078 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (199)
Q Consensus 107 R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~ 171 (199)
.-.-++..||++|.- ||.+|+.|.. . +++|++++...+.++...+ .+.+.+.|.
T Consensus 240 ~~~~~l~~ad~vI~~-~G~~t~~Ea~---~------~g~P~l~ip~~~~~eQ~~n-a~~l~~~g~ 293 (321)
T TIGR00661 240 NFKELIKNAELVITH-GGFSLISEAL---S------LGKPLIVIPDLGQFEQGNN-AVKLEDLGC 293 (321)
T ss_pred HHHHHHHhCCEEEEC-CChHHHHHHH---H------cCCCEEEEcCCCcccHHHH-HHHHHHCCC
Confidence 445567889988775 6778877764 3 6899999876555554433 344556554
No 32
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=85.55 E-value=23 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.072 Sum_probs=22.8
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
.+..||++|.-. |..|+ |++. .++|+|+...-
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv~yk~ 295 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVVGYRM 295 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEEEEcC
Confidence 568899887665 56677 6652 58999987543
No 33
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=83.89 E-value=30 Score=30.55 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccc--c-----eEEc
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY--I-----IVSA 183 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~--~-----i~~~ 183 (199)
++..||.+||-+-+.-=+.|. ++ .++||.++...+-.+.+..+++.|.+.|.+.+-... . +.-.
T Consensus 225 ~La~ad~i~VT~DSvSMvsEA---~~------tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~~~~~~~~pl 295 (311)
T PF06258_consen 225 FLAAADAIVVTEDSVSMVSEA---AA------TGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDLEQWTPYEPL 295 (311)
T ss_pred HHHhCCEEEEcCccHHHHHHH---HH------cCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccccccccCCCc
Confidence 578899999988876655554 44 689999998877666788888999999988765333 1 3445
Q ss_pred CCHHHHHHHHHh
Q 029078 184 QTAHELICKLES 195 (199)
Q Consensus 184 ~d~ee~~~~l~~ 195 (199)
|+.+.+.+.|.+
T Consensus 296 ~et~r~A~~i~~ 307 (311)
T PF06258_consen 296 DETDRVAAEIRE 307 (311)
T ss_pred cHHHHHHHHHHH
Confidence 666666666655
No 34
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=83.48 E-value=33 Score=30.72 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=43.7
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCC
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIA 173 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~Ivlp---GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~ 173 (199)
+++..+++. ....+...||.+++.| .+.|.- +.|++. .++||+.-...+-+..+. +.+.+.|+
T Consensus 303 ~v~l~~~~~-el~~~y~~aDi~~v~~S~~e~~g~~--~lEAma------~G~PVI~g~~~~~~~e~~---~~~~~~g~-- 368 (425)
T PRK05749 303 DVLLGDTMG-ELGLLYAIADIAFVGGSLVKRGGHN--PLEPAA------FGVPVISGPHTFNFKEIF---ERLLQAGA-- 368 (425)
T ss_pred cEEEEecHH-HHHHHHHhCCEEEECCCcCCCCCCC--HHHHHH------hCCCEEECCCccCHHHHH---HHHHHCCC--
Confidence 344555544 3445679999977642 123332 566666 689999732211223332 33333343
Q ss_pred cccccceEEcCCHHHHHHHHHhh
Q 029078 174 PAARYIIVSAQTAHELICKLESK 196 (199)
Q Consensus 174 ~~~~~~i~~~~d~ee~~~~l~~~ 196 (199)
++..+|++++.+.|.+.
T Consensus 369 ------~~~~~d~~~La~~l~~l 385 (425)
T PRK05749 369 ------AIQVEDAEDLAKAVTYL 385 (425)
T ss_pred ------eEEECCHHHHHHHHHHH
Confidence 34467788777776653
No 35
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=83.44 E-value=11 Score=30.76 Aligned_cols=53 Identities=28% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCEEEEecCC------cCcHHHHHHHHHHHHcCCCCCcEEEEecC--CcchHHHHHH
Q 029078 105 HQRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNSLLSFI 163 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG------~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w~~l~~~l 163 (199)
.+=..-++++||++|+.-=+ .||.-|+-.++. .+||++.+..+ .+..++...+
T Consensus 59 ~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A------lgKPv~~~~~d~~~~~~r~~~~~ 119 (172)
T COG3613 59 YEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA------LGKPVYAYRKDAANYASRLNAHL 119 (172)
T ss_pred HHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH------cCCceEEEeecccchhhHHHHhH
Confidence 34455678999998887655 589999999887 68999988653 2334444433
No 36
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=82.81 E-value=2.5 Score=37.06 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 37 LAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
..|.++.+.++..++.+ +.+|| .|...+++.|....+...+||+|.
T Consensus 45 g~a~~~a~~a~~~~~D~via~GG-DGTv~evingl~~~~~~~LgilP~ 91 (301)
T COG1597 45 GDAIEIAREAAVEGYDTVIAAGG-DGTVNEVANGLAGTDDPPLGILPG 91 (301)
T ss_pred ccHHHHHHHHHhcCCCEEEEecC-cchHHHHHHHHhcCCCCceEEecC
Confidence 35677788888777755 55666 699999999999998888999995
No 37
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=80.25 E-value=20 Score=31.06 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=78.8
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCC
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~ 94 (199)
.-+++-|.+++|-.... .+.+...+++++|-++++-|++.|+ +.+...-.+-.+.-|...|+ |..+ +.. .
T Consensus 91 ~G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC--~a~~l~k~gl~~~~g~~~gi-P~vl-~~G----s 160 (258)
T cd00587 91 DGTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC--AAEALLKLGLEDGAGILGGL-PIVF-DMG----N 160 (258)
T ss_pred cCCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch--HHHHHHhcCCccccccccCC-Ccee-ecc----c
Confidence 34778888887765442 3334567899999999999998876 33333222211001555554 3322 211 2
Q ss_pred CceeeecCCHHHHHHHHHH---hcC--EEEEecCCcCcHHHHHH--HHHHHHcCCCCCcEEEEecC--Ccc-hHHHHHHH
Q 029078 95 VGEVKAVSGMHQRKAEMAR---QAD--AFIALPGGYGTLEELLE--VITWAQLGIHDKPVGLLNVD--GYY-NSLLSFID 164 (199)
Q Consensus 95 ~~~~~~~~~m~~R~~~~v~---~sD--a~IvlpGG~GTl~Ei~~--~~~~~~~~~~~kPvvll~~~--g~w-~~l~~~l~ 164 (199)
+++....-.+..|-..... ..| ++++.||. ++|=.. .+.+..+| .|+++ ++. .|- +.+.++|.
T Consensus 161 CvD~~~ai~~A~~lA~~fg~~~in~LP~~~~a~~~---~sqKAvAi~~g~l~lG---Ipv~~-Gp~~P~~~s~~v~~~L~ 233 (258)
T cd00587 161 CVDNSHAANLALKLANMFGGYDRSDLPAVASAPGA---YSQKAAAIATGAVFLG---VPVHV-GPPLPVDGSIPVWKVLT 233 (258)
T ss_pred chhHHHHHHHHHHHHHHhCCCCcccCceEEEccch---hhHHHHHHHHHHHHcC---Cceee-CCCCccccChhHHHHHH
Confidence 3333222333444443322 233 57777763 444433 23333344 46655 221 121 23333332
Q ss_pred HHHHcCCCCcccccceEEcCCHHHHHHHH
Q 029078 165 KAVDEGFIAPAARYIIVSAQTAHELICKL 193 (199)
Q Consensus 165 ~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (199)
+ + .+.-....+.+..||+++.+.+
T Consensus 234 ~----~-~~~~~g~~~~~~~dp~~~a~~i 257 (258)
T cd00587 234 P----E-ASDNEGGYFISVTDYQDIVQKA 257 (258)
T ss_pred h----c-chhccCcEEEecCCHHHHHHHh
Confidence 1 1 1112234578889999988765
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.98 E-value=7.3 Score=34.89 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 104 MHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 104 m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
+..+-..++..||.+|.-|||. |+.|.. . .++|+++.+.
T Consensus 263 ~~~~~~~~~~~aDl~I~k~gg~-tl~EA~---a------~G~PvI~~~~ 301 (391)
T PRK13608 263 YTKHMNEWMASSQLMITKPGGI-TISEGL---A------RCIPMIFLNP 301 (391)
T ss_pred ccchHHHHHHhhhEEEeCCchH-HHHHHH---H------hCCCEEECCC
Confidence 3344556789999999877764 755554 4 5899999864
No 39
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=79.18 E-value=6.3 Score=31.21 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.-|.-+.+.|+..|+.++++|.. =-.+.+++.|.+....+|||.
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 45677889999999999999986 667888899999999999994
No 40
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=78.38 E-value=16 Score=31.68 Aligned_cols=77 Identities=21% Similarity=0.168 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC--cchHHHHHHHHHHHcCCCCcccccce
Q 029078 103 GMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG--YYNSLLSFIDKAVDEGFIAPAARYII 180 (199)
Q Consensus 103 ~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g--~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (199)
++...-..++..||++|. ++|.+|+-|.. . .++|++.....+ ..+... ..+.+.+.|. ..+
T Consensus 241 g~~~~~~~~~~~~d~~i~-~~g~~~~~Ea~---~------~g~Pvv~~~~~~~~~~~~~~-~~~~i~~~~~------g~~ 303 (357)
T PRK00726 241 PFIDDMAAAYAAADLVIC-RAGASTVAELA---A------AGLPAILVPLPHAADDHQTA-NARALVDAGA------ALL 303 (357)
T ss_pred ehHhhHHHHHHhCCEEEE-CCCHHHHHHHH---H------hCCCEEEecCCCCCcCcHHH-HHHHHHHCCC------EEE
Confidence 333344566789999986 55567765553 3 589999875422 111111 1223444331 122
Q ss_pred EEcCC--HHHHHHHHHhh
Q 029078 181 VSAQT--AHELICKLESK 196 (199)
Q Consensus 181 ~~~~d--~ee~~~~l~~~ 196 (199)
.-.+| ++++.+.|.+.
T Consensus 304 ~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred EEcccCCHHHHHHHHHHH
Confidence 23344 88888877754
No 41
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=77.76 E-value=53 Score=29.55 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=41.6
Q ss_pred cCEEE-EecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 029078 115 ADAFI-ALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 191 (199)
Q Consensus 115 sDa~I-vlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 191 (199)
.|+++ .++|++...+++.+.+....-. .++||+++. ..| ..+...+ .+.+.|+ .+.+++|++++++
T Consensus 311 vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~-~~g~~~~~~~~---~L~~~Gi-------~ip~f~~pe~A~~ 379 (388)
T PRK00696 311 VKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVR-LEGTNVELGKK---ILAESGL-------NIIAADTLDDAAQ 379 (388)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEE-eCCCCHHHHHH---HHHHCCC-------CceecCCHHHHHH
Confidence 45544 4667777777777766543322 157899554 333 2222222 2333331 2567899999999
Q ss_pred HHHhh
Q 029078 192 KLESK 196 (199)
Q Consensus 192 ~l~~~ 196 (199)
.+.+.
T Consensus 380 al~~~ 384 (388)
T PRK00696 380 KAVEA 384 (388)
T ss_pred HHHHH
Confidence 88753
No 42
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=76.84 E-value=18 Score=30.77 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 107 R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
+-.-++..+|++++ .+|.++-+.+.++..... .+++|+++ +.+|
T Consensus 85 ~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pvVl-Da~g 128 (272)
T TIGR00196 85 EDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPVVL-DADA 128 (272)
T ss_pred HHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCEEE-EhHH
Confidence 33344566777666 666888655443333222 24678654 6654
No 43
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.92 E-value=32 Score=29.78 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
.+|+++.- .. . ...+.+.++.++|.++|+.++
T Consensus 3 ~~i~iv~~--~~-~-~a~~~~~~l~~~l~~~g~~~~ 34 (264)
T PRK03501 3 RNLFFFYK--RD-K-ELVEKVKPLKKIAEEYGFTVV 34 (264)
T ss_pred cEEEEEEC--CC-H-HHHHHHHHHHHHHHHCCCEEE
Confidence 46888832 22 2 555788889999999998876
No 44
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=73.55 E-value=54 Score=29.92 Aligned_cols=90 Identities=26% Similarity=0.284 Sum_probs=52.5
Q ss_pred HHhCCCeEEEcCCCcC----hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEe
Q 029078 46 LVERNIDLVYGGGSIG----LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIAL 121 (199)
Q Consensus 46 lA~~G~~lv~GGg~~G----lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~Ivl 121 (199)
.+.+....++=|+ .+ +-+.+.+...+.+.++|--... ... .. .+-....++..... ...++..||+|| -
T Consensus 234 ~~d~~~vyvslGt-~~~~~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~~-~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGT-VGNAVELLAIVLEALADLDVRVIVSLGG-ARD-TL-VNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCC-cccHHHHHHHHHHHHhcCCcEEEEeccc-ccc-cc-ccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 3445555565554 36 4456667777788887766544 111 11 11111223333332 233788899875 5
Q ss_pred cCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 122 pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
.||.||..|... .++|++++-
T Consensus 307 hGG~gtt~eaL~---------~gvP~vv~P 327 (406)
T COG1819 307 HGGAGTTSEALY---------AGVPLVVIP 327 (406)
T ss_pred cCCcchHHHHHH---------cCCCEEEec
Confidence 899999888763 689999974
No 45
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=71.15 E-value=33 Score=26.65 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=54.2
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHH--hcCEEEEecCCcCcH
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMAR--QADAFIALPGGYGTL 128 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~--~sDa~IvlpGG~GTl 128 (199)
..+++=.| ++..++.+.+.+.| +|+. .... . .|.. ++ ++.+=...+.+ ..+++++.--|++--
T Consensus 4 valisQSG--~~~~~~~~~~~~~g---~g~s--~~vs--~-Gn~~-dv----~~~d~l~~~~~D~~t~~I~ly~E~~~d~ 68 (138)
T PF13607_consen 4 VALISQSG--ALGTAILDWAQDRG---IGFS--YVVS--V-GNEA-DV----DFADLLEYLAEDPDTRVIVLYLEGIGDG 68 (138)
T ss_dssp EEEEES-H--HHHHHHHHHHHHTT----EES--EEEE----TT-S-SS-----HHHHHHHHCT-SS--EEEEEES--S-H
T ss_pred EEEEECCH--HHHHHHHHHHHHcC---CCee--EEEE--e-Cccc-cC----CHHHHHHHHhcCCCCCEEEEEccCCCCH
Confidence 44555433 56677777788776 2331 0000 0 1111 11 23332333333 356788888899998
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc--------cccceEEcCCHHHHHHHHH
Q 029078 129 EELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA--------ARYIIVSAQTAHELICKLE 194 (199)
Q Consensus 129 ~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~--------~~~~i~~~~d~ee~~~~l~ 194 (199)
.+++++.. ..... |||+++..+. ++.=.... .-..|-+..+ .+.-++.++|+||+++..+
T Consensus 69 ~~f~~~~~--~a~~~-KPVv~lk~Gr-t~~g~~aa--~sHTgslag~~~~~~a~~~~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 69 RRFLEAAR--RAARR-KPVVVLKAGR-TEAGARAA--ASHTGSLAGDDAVYDAALRQAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp HHHHHHHH--HHCCC-S-EEEEE------------------------HHHHHHHHHHCTEEEESSHHHHHHHHC
T ss_pred HHHHHHHH--HHhcC-CCEEEEeCCC-chhhhhhh--hccCCcccCcHHHHHHHHHHcCceEECCHHHHHHHHH
Confidence 89887765 33334 9999996642 11100000 0000000000 1123788999999998754
No 46
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=69.89 E-value=31 Score=28.51 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=44.0
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeee--cCCHHHHHHHHH---------HhcCE
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA--VSGMHQRKAEMA---------RQADA 117 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~--~~~m~~R~~~~v---------~~sDa 117 (199)
.|-.||||| . |..+.++-.++++++..++-+ .+...|++.. .+++ .+++-+..+..+ +.-|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 567899997 5 999999999999988776653 1222232211 1222 234444444433 33689
Q ss_pred EEEecCCc
Q 029078 118 FIALPGGY 125 (199)
Q Consensus 118 ~IvlpGG~ 125 (199)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99888887
No 47
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=69.14 E-value=18 Score=29.77 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 029078 108 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (199)
Q Consensus 108 ~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (199)
..-++..||++|.-...-|.-.=+.|++. .++|++.-+..+. . +++ .+ .....++-.+|++
T Consensus 257 ~~~~~~~adi~i~ps~~e~~~~~~~Ea~~------~G~Pvi~s~~~~~-~---~~i----~~-----~~~g~~~~~~~~~ 317 (359)
T cd03808 257 VPELLAAADVFVLPSYREGLPRVLLEAMA------MGRPVIATDVPGC-R---EAV----ID-----GVNGFLVPPGDAE 317 (359)
T ss_pred HHHHHHhccEEEecCcccCcchHHHHHHH------cCCCEEEecCCCc-h---hhh----hc-----CcceEEECCCCHH
Confidence 33557889987754432222233566666 7899998765432 2 211 11 1122334446788
Q ss_pred HHHHHHHhh
Q 029078 188 ELICKLESK 196 (199)
Q Consensus 188 e~~~~l~~~ 196 (199)
++.+.|.+.
T Consensus 318 ~~~~~i~~l 326 (359)
T cd03808 318 ALADAIERL 326 (359)
T ss_pred HHHHHHHHH
Confidence 888877654
No 48
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=68.61 E-value=28 Score=30.42 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=40.9
Q ss_pred HHHHHhCCCeEEE---cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEE
Q 029078 43 GKQLVERNIDLVY---GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAF 118 (199)
Q Consensus 43 G~~lA~~G~~lv~---GGg~-~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~ 118 (199)
-+.|-.....+++ |||. .|.--.+++-+.+.|-.+++|.|..+. .|.. .....-......|.+.+|.+
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg~-------~~~~nA~~~l~~L~~~~d~~ 150 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEGK-------KRMRQAEEGLEELRKHVDTL 150 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hHHHHHHHHHHHHHHhCCEE
Confidence 3444445665665 5554 345555678888888888998754321 1110 00111124455567888988
Q ss_pred EEec
Q 029078 119 IALP 122 (199)
Q Consensus 119 Ivlp 122 (199)
|+++
T Consensus 151 ivid 154 (304)
T cd02201 151 IVIP 154 (304)
T ss_pred EEEe
Confidence 8887
No 49
>PRK08105 flavodoxin; Provisional
Probab=68.51 E-value=5.7 Score=31.08 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|.+|.|+.||..++.+ +.|+++++.+.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnte---~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNAL---LVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHhCCCceE
Confidence 4578899899888555 568999999998888764
No 50
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=68.39 E-value=30 Score=30.29 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=37.3
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC------------------------------eEEEcCCCcChhH
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI------------------------------DLVYGGGSIGLMG 64 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~------------------------------~lv~GGg~~GlM~ 64 (199)
++++++|+|+.-. . .+...+.+.++.++|.++|+ .+++-|| .|.|-
T Consensus 2 ~~~~~~v~iv~~~--~-~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GG-DGt~l 77 (291)
T PRK02155 2 KSQFKTVALIGRY--Q-TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGG-DGTML 77 (291)
T ss_pred CCcCCEEEEEecC--C-CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECC-cHHHH
Confidence 4556778888322 2 34444556666666644432 2344556 48887
Q ss_pred HHHHHHHhcCCeEEEE
Q 029078 65 LVSQAVYDGGRHVLGV 80 (199)
Q Consensus 65 a~a~gA~~~gg~viGv 80 (199)
-+++.....+-.++||
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
Confidence 7777766667778887
No 51
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.11 E-value=33 Score=28.86 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCEEEEec----CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccce
Q 029078 105 HQRKAEMARQADAFIALP----GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (199)
Q Consensus 105 ~~R~~~~v~~sDa~Ivlp----GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (199)
.+....+...||++|... .|+|. =+.|++. .++||+.-+.++..+.+.. . .....+
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~--~~~Ea~~------~g~Pvi~~~~~~~~~~i~~-------~-----~~~g~~ 313 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGI--VLLEAMA------FGKPVISTEIGTGGSYVNL-------H-----GVTGLV 313 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccch--HHHHHHH------cCCCEEecCCCCchhHHhh-------C-----CCceEE
Confidence 344566778899987642 45564 2556665 6899998776554332221 0 111223
Q ss_pred EEcCCHHHHHHHHHhh
Q 029078 181 VSAQTAHELICKLESK 196 (199)
Q Consensus 181 ~~~~d~ee~~~~l~~~ 196 (199)
+-.+|++++.+.|.+.
T Consensus 314 ~~~~d~~~~~~~i~~l 329 (357)
T cd03795 314 VPPGDPAALAEAIRRL 329 (357)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 3456788888877654
No 52
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=67.67 E-value=11 Score=29.78 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=26.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 029078 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (199)
Q Consensus 17 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 55 (199)
+-++|+|+|-|..+..+. +.+.+.|-++||.|+=
T Consensus 15 ~~K~IAvVG~S~~P~r~s-----y~V~kyL~~~GY~ViP 48 (140)
T COG1832 15 SAKTIAVVGASDKPDRPS-----YRVAKYLQQKGYRVIP 48 (140)
T ss_pred hCceEEEEecCCCCCccH-----HHHHHHHHHCCCEEEe
Confidence 446999998777655454 4688999999999963
No 53
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.61 E-value=10 Score=33.41 Aligned_cols=107 Identities=26% Similarity=0.334 Sum_probs=62.2
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCc
Q 029078 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (199)
Q Consensus 17 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~ 96 (199)
++++|.++.- ++ .+...+.+.++.++|.+.|+.+..---. . ... +. ..
T Consensus 2 ~~kkv~lI~n--~~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~-~---------~~~-----~~------------~~-- 49 (305)
T PRK02645 2 QLKQVIIAYK--AG-SSQAKEAAERCAKQLEARGCKVLMGPSG-P---------KDN-----PY------------PV-- 49 (305)
T ss_pred CcCEEEEEEe--CC-CHHHHHHHHHHHHHHHHCCCEEEEecCc-h---------hhc-----cc------------cc--
Confidence 4567888832 23 3455567888888898898886643211 0 000 00 00
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec-C--CcchHH------HHHHHHHH
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-D--GYYNSL------LSFIDKAV 167 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~-~--g~w~~l------~~~l~~~~ 167 (199)
. .....+..|.+|++ ||=||+.+++..+. ..++|++.+|. + ||.... .+.++++.
T Consensus 50 -------~---~~~~~~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~gin~~G~lGFL~~~~~~~~~~~~l~~i~ 113 (305)
T PRK02645 50 -------F---LASASELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILSVNVGGHLGFLTHPRDLLQDESVWDRLQ 113 (305)
T ss_pred -------h---hhccccCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEEEecCCcceEecCchhhcchHHHHHHHH
Confidence 0 00111346766666 89999999886553 25789999986 2 666543 35566666
Q ss_pred HcCC
Q 029078 168 DEGF 171 (199)
Q Consensus 168 ~~g~ 171 (199)
+..|
T Consensus 114 ~g~~ 117 (305)
T PRK02645 114 EDRY 117 (305)
T ss_pred cCCc
Confidence 5443
No 54
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=67.52 E-value=22 Score=28.80 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=50.8
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHH-----HHHcC-CCCCcEEEEe--cCCcch--HHHHHHHHHHHcCC--CCccccc--
Q 029078 113 RQADAFIALPGGYGTLEELLEVIT-----WAQLG-IHDKPVGLLN--VDGYYN--SLLSFIDKAVDEGF--IAPAARY-- 178 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~-----~~~~~-~~~kPvvll~--~~g~w~--~l~~~l~~~~~~g~--i~~~~~~-- 178 (199)
..+|++|+.|-..+|+.-+..=++ ..-+. ..++|+++.- ...+|+ ...+-++.+.+.|+ +++....
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la 154 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLA 154 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCccc
Confidence 368999999999999988763221 11111 2368999872 134785 34455667777663 4443311
Q ss_pred ----ceEEcCCHHHHHHHHHhh
Q 029078 179 ----IIVSAQTAHELICKLESK 196 (199)
Q Consensus 179 ----~i~~~~d~ee~~~~l~~~ 196 (199)
-.==..+++++++.+.++
T Consensus 155 ~g~~g~g~~~~~~~i~~~~~~~ 176 (177)
T TIGR02113 155 CGDYGRGALADLDDILQTIKEI 176 (177)
T ss_pred CCCccccCCCCHHHHHHHHHHh
Confidence 112235788888888764
No 55
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=67.40 E-value=33 Score=29.42 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCEEEEec-CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 105 HQRKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 105 ~~R~~~~v~~sDa~Ivlp-GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
.+...-++..||++|... .|+|.. +.|++. .++||+..+.+|. ..+ +.......++-.
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama------~G~Pvi~~~~~~~-~e~------------i~~~~~G~~~~~ 310 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMA------SGTPVIAYGKGGA-LET------------VIDGVTGILFEE 310 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHH------cCCCEEEeCCCCC-cce------------eeCCCCEEEeCC
Confidence 344566788999988533 567765 467776 7899999876542 211 111122333335
Q ss_pred CCHHHHHHHHHhhh
Q 029078 184 QTAHELICKLESKA 197 (199)
Q Consensus 184 ~d~ee~~~~l~~~~ 197 (199)
+|++++.+.|..+.
T Consensus 311 ~~~~~la~~i~~l~ 324 (351)
T cd03804 311 QTVESLAAAVERFE 324 (351)
T ss_pred CCHHHHHHHHHHHH
Confidence 78888777776543
No 56
>PRK09004 FMN-binding protein MioC; Provisional
Probab=67.34 E-value=6.6 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|.+|.|+.||..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGnae---~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGAE---YVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHHH---HHHHHHHHHHHHcCCceE
Confidence 4578899899988555 568889999888887654
No 57
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=66.77 E-value=12 Score=30.91 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=52.9
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcC-------CCCCcEEEEecCCcch--HHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLG-------IHDKPVGLLNVDGYYN--SLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~-------~~~kPvvll~~~g~w~--~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
.|+.|+.|-...||..|..=++-..+. +.++|.+|+-.+--+. .+.++++-....+.|-|.....++-=.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 679999999999999998655433332 3578998885553333 3444333222333555666667777789
Q ss_pred HHHHHHHHH
Q 029078 186 AHELICKLE 194 (199)
Q Consensus 186 ~ee~~~~l~ 194 (199)
.||+++++.
T Consensus 161 ieDlvd~~v 169 (191)
T COG0163 161 IEDLVDFVV 169 (191)
T ss_pred HHHHHHHHH
Confidence 999998875
No 58
>PRK09267 flavodoxin FldA; Validated
Probab=66.57 E-value=60 Score=25.31 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=17.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHH
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLV 47 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA 47 (199)
|++|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 3468888888877544 34666666664
No 59
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=65.99 E-value=8.5 Score=28.96 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
+|+.-||=||++|+...+.-........|+.++
T Consensus 52 ~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgii 84 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVL 84 (124)
T ss_pred EEEEEccccHHHHHHHHHHhcccccCCCcEEEe
Confidence 777899999999998766321111111577777
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=65.58 E-value=42 Score=27.36 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 106 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
+....++..||++|.-.. |+|+ =+.|++. .++|++..+..+....+. +.+ ....++-.
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~~~~~~-------~~~-----~~g~~~~~ 303 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPM--VLLEAMA------FGLPVISFDCPTGPSEII-------EDG-----VNGLLVPN 303 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCH--HHHHHHH------cCCCEEEecCCCchHhhh-------ccC-----cceEEeCC
Confidence 334456778998775432 3343 3566666 789999876543332221 111 11122233
Q ss_pred CCHHHHHHHHHhh
Q 029078 184 QTAHELICKLESK 196 (199)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (199)
+|++++.+.|.+.
T Consensus 304 ~~~~~~~~~i~~l 316 (348)
T cd03820 304 GDVEALAEALLRL 316 (348)
T ss_pred CCHHHHHHHHHHH
Confidence 4667777777654
No 61
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.11 E-value=32 Score=30.22 Aligned_cols=61 Identities=23% Similarity=0.325 Sum_probs=39.5
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe------------------------------------EEEcCCC
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------------LVYGGGS 59 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~------------------------------------lv~GGg~ 59 (199)
+.+++|+|+.- . ..+...+.+.++.++|.++|+. ++.| |
T Consensus 3 ~~~~~i~ii~~--~-~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG-G- 77 (296)
T PRK04539 3 SPFHNIGIVTR--P-NTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLG-G- 77 (296)
T ss_pred CCCCEEEEEec--C-CCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEEC-C-
Confidence 34667888832 2 2455667778888877655532 3334 4
Q ss_pred cChhHHHHHHHHhcCCeEEEEe
Q 029078 60 IGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 60 ~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.|.|=.+++-+...+-.++||-
T Consensus 78 DGT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 78 DGTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred cHHHHHHHHHhcccCCCEEEEe
Confidence 4888777777766677888873
No 62
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=64.97 E-value=18 Score=32.25 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHHH
Q 029078 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (199)
Q Consensus 112 v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~~ 165 (199)
.+..|+|||+-| .-||+|-+.++.++-- .+||||+-+.- --.|...+++..
T Consensus 75 ~~~~dG~VVtHG-TDTme~TA~~Ls~~l~--~~kPVVlTGsmrp~~~~~sDg~~NL~~A 130 (336)
T TIGR00519 75 YDDYDGFVITHG-TDTMAYTAAALSFMLE--TPKPVVFTGAQRSSDRPSSDAALNLLCA 130 (336)
T ss_pred HhcCCeEEEccC-CchHHHHHHHHHHHcC--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 345899999985 7999999988876443 38999997542 234566666554
No 63
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=64.73 E-value=20 Score=31.82 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=35.1
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~~ 165 (199)
+..|+|||..| .-||+|.+..+.+..- .+||||+-+.- -..|...++.+.
T Consensus 77 ~~~dGiVVtHG-TDTmeeTA~~L~~~l~--~~kPVVlTGA~rp~~~~~sDg~~NL~~A 131 (323)
T cd00411 77 DSYDGFVITHG-TDTMEETAYFLSLTLE--NDKPVVLTGSMRPSTELSADGPLNLYNA 131 (323)
T ss_pred HhcCcEEEEcC-cccHHHHHHHHHHHhc--CCCCEEEECCCCCCCCcCcchHHHHHHH
Confidence 34899999875 8999999988876443 38999997441 234555665554
No 64
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=64.59 E-value=11 Score=28.38 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCC--eEEEcCCCcChhHHHHHHHHhcCC---eEEEEeCCC
Q 029078 40 IQLGKQLVERNI--DLVYGGGSIGLMGLVSQAVYDGGR---HVLGVIPKT 84 (199)
Q Consensus 40 ~~lG~~lA~~G~--~lv~GGg~~GlM~a~a~gA~~~gg---~viGv~P~~ 84 (199)
+++.+....... .|+..|| .|..-.+..+..+.+. ..+|++|..
T Consensus 43 ~~~~~~~~~~~~~~~ivv~GG-DGTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 43 EALARILALDDYPDVIVVVGG-DGTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHHTTS-SEEEEEES-HHHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred HHHHHHHhhccCccEEEEEcC-ccHHHHHHHHHhhcCCCccceEEEecCC
Confidence 345554444444 6666667 5999999998888765 479999853
No 65
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=64.42 E-value=99 Score=27.07 Aligned_cols=102 Identities=24% Similarity=0.220 Sum_probs=53.6
Q ss_pred hCCCeEEEcCCC--cChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeee--cCCHH-HHHHHHHHhcCEEEEe
Q 029078 48 ERNIDLVYGGGS--IGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKA--VSGMH-QRKAEMARQADAFIAL 121 (199)
Q Consensus 48 ~~G~~lv~GGg~--~GlM~a~a~gA~~~gg-~viGv~P~~~~~~e~~~~~~~~~~~--~~~m~-~R~~~~v~~sDa~Ivl 121 (199)
++|..+|.||+. .|-...++.+|..+|. .|.-.+|......- .....++++ ..+.. ..+..+.+..|++++=
T Consensus 31 ~~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~~~--~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviG 108 (284)
T COG0063 31 DYGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAASAL--KSYLPELMVIEVEGKKLLEERELVERADAVVIG 108 (284)
T ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhhhH--hhcCcceeEeecccchhhHHhhhhccCCEEEEC
Confidence 367777777752 4667777888888864 44444454221110 111112222 12222 2233566778887654
Q ss_pred cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 122 PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 122 pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
-|.|.-+|..++......... +|+++ +-++
T Consensus 109 -pGlG~~~~~~~~~~~~l~~~~-~p~Vi-DADa 138 (284)
T COG0063 109 -PGLGRDAEGQEALKELLSSDL-KPLVL-DADA 138 (284)
T ss_pred -CCCCCCHHHHHHHHHHHhccC-CCEEE-eCcH
Confidence 567887766655432222112 89877 5554
No 66
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=64.01 E-value=21 Score=27.09 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHh----CCCeE-EE--cCCC-cChhHHHHHHHHhcC
Q 029078 36 QLAAIQLGKQLVE----RNIDL-VY--GGGS-IGLMGLVSQAVYDGG 74 (199)
Q Consensus 36 ~~~A~~lG~~lA~----~G~~l-v~--GGg~-~GlM~a~a~gA~~~g 74 (199)
.+.|+.+|+.||+ .|+.- ++ ||.. .|-+.|++++|.++|
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 5778888888887 45433 33 3322 689999999999987
No 67
>PRK09330 cell division protein FtsZ; Validated
Probab=63.87 E-value=35 Score=31.25 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHhCCCeEEE---cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEE
Q 029078 44 KQLVERNIDLVY---GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFI 119 (199)
Q Consensus 44 ~~lA~~G~~lv~---GGg~-~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~I 119 (199)
+.|-..+..+++ |||. .|.=-.+++-|++.|..+++|.|..+. .|... ....=..-...|.+.+|.+|
T Consensus 93 ~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~~-------r~~nA~~gL~~L~~~~D~vI 164 (384)
T PRK09330 93 EALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGKK-------RMKQAEEGIEELRKHVDTLI 164 (384)
T ss_pred HHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccchh-------HHHHHHHHHHHHHHHCCEEE
Confidence 333334444444 3442 244447788999999999999874331 11100 00111233455678899988
Q ss_pred Eec
Q 029078 120 ALP 122 (199)
Q Consensus 120 vlp 122 (199)
++|
T Consensus 165 vi~ 167 (384)
T PRK09330 165 VIP 167 (384)
T ss_pred EEe
Confidence 887
No 68
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=63.37 E-value=65 Score=29.03 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=62.7
Q ss_pred cchHHHHhHHHHhhcccceEEE--EcCCCCCC-CHHHHHHHHHHHHHHHh--CCCe--EEE---cCCC-cChhHHHHHHH
Q 029078 2 ETQQQQQQAAAALKSRFKRVCV--FCGSSPGK-SPSYQLAAIQLGKQLVE--RNID--LVY---GGGS-IGLMGLVSQAV 70 (199)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~I~V--~ggs~~~~-~~~~~~~A~~lG~~lA~--~G~~--lv~---GGg~-~GlM~a~a~gA 70 (199)
||-.|.++..++ .+++ +|+- .-|-..+. ++...+.|++--+.|.+ .|.. .++ |||. .|.--.+++.|
T Consensus 44 nTD~q~L~~~~a-~~ki-~iG~~~t~GlGaGa~P~vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakia 121 (338)
T COG0206 44 NTDAQALKSSKA-DRKI-LIGESITRGLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIA 121 (338)
T ss_pred ccCHHHHhcccc-CeEE-EeccceeeccCCCCCcHHHHHHHHHHHHHHHHHhccCCeEEEEeeecCCccccccHHHHHHH
Confidence 455555554442 3332 3431 11222333 44556666666666665 4554 333 4443 35577789999
Q ss_pred HhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecC
Q 029078 71 YDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPG 123 (199)
Q Consensus 71 ~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpG 123 (199)
++.|-.|++|..-.+ ..| .. .....-......|-+.+|.+|++|-
T Consensus 122 ke~g~ltvavvt~Pf-~~E--G~-----~r~~~A~~gi~~L~~~~DtlIvi~N 166 (338)
T COG0206 122 KELGALTVAVVTLPF-SFE--GS-----PRMENAEEGIEELREVVDTLIVIPN 166 (338)
T ss_pred HhcCCcEEEEEEecc-hhc--Cc-----hHHHHHHHHHHHHHHhCCcEEEEec
Confidence 999999999852211 111 11 1112225677788889999999984
No 69
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=63.18 E-value=5.2 Score=40.40 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhc-----------CCeEEEEeCCCCCC
Q 029078 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDG-----------GRHVLGVIPKTLMP 87 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~-----------gg~viGv~P~~~~~ 87 (199)
.+|+|.|.-+-+.||.||| |.=+++.-|++.+ ||.+||-.-..+..
T Consensus 829 sRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA 885 (1158)
T KOG2968|consen 829 SRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYA 885 (1158)
T ss_pred HHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhh
Confidence 4688999999999999987 8888888887763 67788765444443
No 70
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=63.11 E-value=60 Score=28.52 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=46.9
Q ss_pred CCCCCHHH-HHHHHHHHHHHHh----CCCeEEE---cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCcee
Q 029078 28 SPGKSPSY-QLAAIQLGKQLVE----RNIDLVY---GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (199)
Q Consensus 28 ~~~~~~~~-~~~A~~lG~~lA~----~G~~lv~---GGg~-~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~ 98 (199)
..+.+++. ++.|.+.-+.|-+ ...-+++ |||. .|.=-.+++-+++.+..+++|.|..+.. |..
T Consensus 59 GaG~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg~------- 130 (303)
T cd02191 59 GAGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSD-EGG------- 130 (303)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCccc-CCc-------
Confidence 34445432 3444444333332 3444444 4443 3555666788999998999997654321 111
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecC
Q 029078 99 KAVSGMHQRKAEMARQADAFIALPG 123 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~IvlpG 123 (199)
....+-......|.+.+|.+|+++=
T Consensus 131 ~~~~NA~~~l~~L~~~~D~~iv~dN 155 (303)
T cd02191 131 IRMLNAAEGFQTLVREVDNLMVIPN 155 (303)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEeh
Confidence 1111113445556677888888773
No 71
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=62.07 E-value=14 Score=27.05 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHhcCEEEEec-CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 107 RKAEMARQADAFIALP-GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 107 R~~~~v~~sDa~Ivlp-GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
...-++..+|+.|..- =+.++-.-+++.+. .++|++..+. + +..+ ....... +.+.+|
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~------~G~pvi~~~~-~-~~~~------------~~~~~~~-~~~~~~ 121 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMA------AGKPVIASDN-G-AEGI------------VEEDGCG-VLVAND 121 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHC------TT--EEEEHH-H-CHCH------------S---SEE-EE-TT-
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHH------hCCCEEECCc-c-hhhh------------eeecCCe-EEECCC
Confidence 3455577899877632 13356667777775 7899998754 2 2221 1111222 444899
Q ss_pred HHHHHHHHHhhhc
Q 029078 186 AHELICKLESKAV 198 (199)
Q Consensus 186 ~ee~~~~l~~~~~ 198 (199)
++++.+.|.+...
T Consensus 122 ~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 122 PEELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
No 72
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=61.82 E-value=38 Score=27.48 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHH-----HHcC-CCCCcEEEEec--CCcchH--HHHHHHHHHHcCC--CCccccc
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITW-----AQLG-IHDKPVGLLNV--DGYYNS--LLSFIDKAVDEGF--IAPAARY 178 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~-----~~~~-~~~kPvvll~~--~g~w~~--l~~~l~~~~~~g~--i~~~~~~ 178 (199)
+...+|++|+.|-..+|+.-++.=++- .-+. ..++|+++.-. ..+|.. ..+-++.+.+.|+ +++....
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~ 153 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGL 153 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCc
Confidence 346799999999999999887632211 1111 24799998732 247753 3344666777663 3333211
Q ss_pred c------eEEcCCHHHHHHHHHhhh
Q 029078 179 I------IVSAQTAHELICKLESKA 197 (199)
Q Consensus 179 ~------i~~~~d~ee~~~~l~~~~ 197 (199)
+ ..--.|+|++++++.++.
T Consensus 154 la~~~~g~g~~~~~~~i~~~v~~~~ 178 (182)
T PRK07313 154 LACGDEGYGALADIETILETIENTL 178 (182)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHh
Confidence 1 344678999999998754
No 73
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=60.56 E-value=16 Score=29.89 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=52.0
Q ss_pred hcCEEEEecCCcCcHHHHHHHH-----HH--HHcCCCCCcEEEEecCCcchH--HHHHHHHHHHcCCC-CcccccceEEc
Q 029078 114 QADAFIALPGGYGTLEELLEVI-----TW--AQLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGFI-APAARYIIVSA 183 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~-----~~--~~~~~~~kPvvll~~~g~w~~--l~~~l~~~~~~g~i-~~~~~~~i~~~ 183 (199)
.+|++|+.|-..+|+.-+..=+ +. ...-..++|+++.-. .+|.. ..+-++.+.+.|+. =+.....+.--
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~-~M~~~p~~~~Nl~~L~~~G~~vi~P~~g~~a~p 156 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR-ETPLHLGHLRNMTKLAEMGAIIMPPVPAFYHRP 156 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec-cccCCHHHHHHHHHHHHCcCEEECCCcccccCC
Confidence 4899999999999998876322 11 011125789998864 47753 33446667777752 22233455556
Q ss_pred CCHHHHHHHHH
Q 029078 184 QTAHELICKLE 194 (199)
Q Consensus 184 ~d~ee~~~~l~ 194 (199)
.+.+|+++++.
T Consensus 157 ~~~~~~~~~~v 167 (185)
T PRK06029 157 QTLEDMVDQTV 167 (185)
T ss_pred CCHHHHHHHHH
Confidence 89999998875
No 74
>PRK11914 diacylglycerol kinase; Reviewed
Probab=60.17 E-value=20 Score=31.02 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 38 AAIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 38 ~A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
.|.++.+.+++.++ .||..|| .|....++.+.... ...+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GG-DGTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGG-DGVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECC-chHHHHHhHHhccC-CCcEEEEeC
Confidence 45667777777765 3555666 59999999887654 467999994
No 75
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=59.86 E-value=53 Score=27.70 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCc
Q 029078 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~ 155 (199)
+....++..||++|.-. .|+|. =+.|++. .++|++..+..++
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~------~g~PvI~~~~~~~ 299 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPN--TAIEALA------CGTPVVAFDVGGI 299 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccH--HHHHHHh------cCCCEEEecCCCC
Confidence 34456788999987643 33343 3556665 7899998876543
No 76
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=59.69 E-value=51 Score=24.96 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=4.3
Q ss_pred EEEecCCcC
Q 029078 118 FIALPGGYG 126 (199)
Q Consensus 118 ~IvlpGG~G 126 (199)
.|++.||.+
T Consensus 37 ~ii~sGg~~ 45 (150)
T cd06259 37 KLIVSGGQG 45 (150)
T ss_pred EEEEcCCCC
Confidence 444455544
No 77
>PRK00861 putative lipid kinase; Reviewed
Probab=59.64 E-value=17 Score=31.32 Aligned_cols=43 Identities=33% Similarity=0.507 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
|.++.+..++.++ .|+..|| .|....+..+.... +..+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vv~~GG-DGTl~evv~~l~~~-~~~lgviP~ 89 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGG-DGTLSAVAGALIGT-DIPLGIIPR 89 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECC-hHHHHHHHHHHhcC-CCcEEEEcC
Confidence 3455666666664 4566677 59999999998765 477999995
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=59.63 E-value=43 Score=28.12 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCEEEEecCC------cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccc
Q 029078 106 QRKAEMARQADAFIALPGG------YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI 179 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG------~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~ 179 (199)
+...-++..||++|...-. -|.-.=++|++. .++|++..+..+..+ ++..+ ....
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a------~G~Pvi~~~~~~~~~--------~i~~~-----~~g~ 307 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA------MGLPVISTDVSGIPE--------LVEDG-----ETGL 307 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH------cCCCEEecCCCCcch--------hhhCC-----CceE
Confidence 4555667899987764321 222234667776 789999876554321 11111 1122
Q ss_pred eEEcCCHHHHHHHHHhh
Q 029078 180 IVSAQTAHELICKLESK 196 (199)
Q Consensus 180 i~~~~d~ee~~~~l~~~ 196 (199)
++-.+|++++.+.|.++
T Consensus 308 ~~~~~~~~~l~~~i~~~ 324 (355)
T cd03799 308 LVPPGDPEALADAIERL 324 (355)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 22234788887777654
No 79
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=59.46 E-value=63 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivl---pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
+....++..||++|.- ..|+|.. +.|++. .++||+..+.+|
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma------~G~PVI~s~~gg 311 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMA------AGKPVLASTKGG 311 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHH------cCCCEEEeCCCC
Confidence 3445567899999863 2455542 566666 789999987655
No 80
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=59.25 E-value=22 Score=29.85 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHh----CCCe-EEE--cCCC-cChhHHHHHHHHhcC
Q 029078 36 QLAAIQLGKQLVE----RNID-LVY--GGGS-IGLMGLVSQAVYDGG 74 (199)
Q Consensus 36 ~~~A~~lG~~lA~----~G~~-lv~--GGg~-~GlM~a~a~gA~~~g 74 (199)
.+.|..+|+.||+ .|+. |++ ||.. .|-+.|.|++|+++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 3678888988887 4644 333 4432 689999999999987
No 81
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=58.96 E-value=77 Score=27.33 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=29.0
Q ss_pred HHHHHHHHH-----hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEE
Q 029078 105 HQRKAEMAR-----QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 148 (199)
Q Consensus 105 ~~R~~~~v~-----~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvv 148 (199)
.+|-+-|.+ ..|+++..-||.|+. ++..-+.|..+..++|+++
T Consensus 48 ~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~i 95 (282)
T cd07025 48 EERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFV 95 (282)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEE
Confidence 556555544 378999999999996 4666566666655555443
No 82
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=58.70 E-value=20 Score=30.83 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcCC---eEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGR---HVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~gg---~viGv~P~ 83 (199)
|.++.+.+++.++ .||.-|| .|....+..|..+.+- ..+||+|.
T Consensus 41 a~~~a~~~~~~~~d~vv~~GG-DGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 41 AQRYVAEALALGVSTVIAGGG-DGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred HHHHHHHHHHcCCCEEEEEcC-ChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 3455666666654 3444556 5999999999886532 35999994
No 83
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=58.69 E-value=11 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCEEEEec-----CCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 106 QRKAEMARQADAFIALP-----GGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp-----GG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
+=...+++.+|++|++. =+.|+.-|+-.+.+ +++||.++
T Consensus 71 ~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~------~~~~V~~~ 114 (116)
T PF09152_consen 71 DWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE------MGMPVFLY 114 (116)
T ss_dssp HHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH------TT-EEEEH
T ss_pred HHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH------cCCeEEEe
Confidence 34556789999999986 35599999988887 78999874
No 84
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=58.27 E-value=60 Score=24.56 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcC
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (199)
.+....++..||++|...---|.-.=+.+++. .++|+++-+.. .+.. .+.++ ....++-..
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~------~g~pvI~~~~~-~~~e-------~~~~~-----~~g~~~~~~ 143 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMA------CGCPVIASDIG-GNNE-------IINDG-----VNGFLFDPN 143 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHH------TT-EEEEESST-HHHH-------HSGTT-----TSEEEESTT
T ss_pred ccccccccccceeccccccccccccccccccc------cccceeecccc-CCce-------eeccc-----cceEEeCCC
Confidence 45567778889999987542222224556666 68999987744 2222 22222 123344456
Q ss_pred CHHHHHHHHHhhh
Q 029078 185 TAHELICKLESKA 197 (199)
Q Consensus 185 d~ee~~~~l~~~~ 197 (199)
|++++.+.|.++.
T Consensus 144 ~~~~l~~~i~~~l 156 (172)
T PF00534_consen 144 DIEELADAIEKLL 156 (172)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887643
No 85
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=58.19 E-value=85 Score=28.21 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCEEEEe-cC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEE
Q 029078 106 QRKAEMARQADAFIAL-PG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivl-pG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (199)
+....++..||++|.+ +. |.|--.-++|+++ .++||+..+.+| ..+ +++++. .. +.+
T Consensus 306 ~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama------~G~PVI~s~~~~----~~e----iv~~~~-----~G-~lv 365 (415)
T cd03816 306 EDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCALDFKC----IDE----LVKHGE-----NG-LVF 365 (415)
T ss_pred HHHHHHHHhCCEEEEccccccccCCcHHHHHHHH------cCCCEEEeCCCC----HHH----HhcCCC-----CE-EEE
Confidence 4444567899999853 21 2333345667776 789999876543 222 232221 11 222
Q ss_pred cCCHHHHHHHHHhh
Q 029078 183 AQTAHELICKLESK 196 (199)
Q Consensus 183 ~~d~ee~~~~l~~~ 196 (199)
+|++++.+.|.+.
T Consensus 366 -~d~~~la~~i~~l 378 (415)
T cd03816 366 -GDSEELAEQLIDL 378 (415)
T ss_pred -CCHHHHHHHHHHH
Confidence 6888888887654
No 86
>PRK05723 flavodoxin; Provisional
Probab=58.05 E-value=12 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
++|+|+.||..++.+ +.|+++.+.+.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478899899988665 468889999988888864
No 87
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.85 E-value=1.3e+02 Score=26.15 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=29.3
Q ss_pred CCcEEEEecCCc-chHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 144 DKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 144 ~kPvvll~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
+.||++.++.-- .+.+++.++..++.|-.--..-+.++..+||..+++.|..
T Consensus 192 ~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 192 PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHH
Confidence 567766644322 1334555555555565544455566666777777666654
No 88
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=57.69 E-value=65 Score=26.13 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=50.1
Q ss_pred hcCEEEEecCCcCcHHHHHHHH-----HHH--HcCCCCCcEEEEecCCcchH--HHHHHHHHHHcCC--CCcccccceEE
Q 029078 114 QADAFIALPGGYGTLEELLEVI-----TWA--QLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGF--IAPAARYIIVS 182 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~-----~~~--~~~~~~kPvvll~~~g~w~~--l~~~l~~~~~~g~--i~~~~~~~i~~ 182 (199)
.+|++|+.|-..+|+.-+..=+ +.. ..-..++|+++.-.+ .|.. -.+-++.+.+.|+ +++. ...+.-
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~-m~~~~~~~~Nl~~L~~~G~~ii~P~-~g~~~~ 152 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRE-TPLNSIHLENMLRLSRMGAIILPPM-PAFYTR 152 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCC-CcCCHHHHHHHHHHHHCCCEEECCC-CcccCC
Confidence 4899999999999998876321 110 111257899988544 5542 2233456666663 4332 344555
Q ss_pred cCCHHHHHHHHHh
Q 029078 183 AQTAHELICKLES 195 (199)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (199)
-.+++|+++++..
T Consensus 153 p~~~~~~~~~i~~ 165 (181)
T TIGR00421 153 PKSVEDMIDFIVG 165 (181)
T ss_pred CCCHHHHHHHHHH
Confidence 6899998887753
No 89
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=57.63 E-value=27 Score=30.17 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 55 (199)
+++|+|.+|......+.=...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 34788887777766676678999999999999998654
No 90
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=57.25 E-value=49 Score=29.17 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
+....++..||++|... .++|. =+.|+++ .++|||..+..|. .++ +. ......++-.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA------~G~PVIas~~~g~----~e~----i~-----~~~~G~lv~~ 350 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMA------CGCLVVGSDTAPV----REV----IT-----DGENGLLVDF 350 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHH------CCCCEEEcCCCCc----hhh----cc-----cCCceEEcCC
Confidence 34445678999988643 34442 3566666 7999998776542 221 11 1112223334
Q ss_pred CCHHHHHHHHHhh
Q 029078 184 QTAHELICKLESK 196 (199)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (199)
+|++++.+.|.+.
T Consensus 351 ~d~~~la~~i~~l 363 (396)
T cd03818 351 FDPDALAAAVIEL 363 (396)
T ss_pred CCHHHHHHHHHHH
Confidence 6788877777654
No 91
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.07 E-value=64 Score=28.53 Aligned_cols=62 Identities=26% Similarity=0.274 Sum_probs=37.8
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe---------------------------------------EEE
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID---------------------------------------LVY 55 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~---------------------------------------lv~ 55 (199)
++++++|+++.- .. .+...+.+.++.++|.++|+. +++
T Consensus 2 ~~~~~~I~iv~~--~~-~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 78 (306)
T PRK03372 2 MTASRRVLLVAH--TG-RDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV 78 (306)
T ss_pred CCCccEEEEEec--CC-CHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE
Confidence 456677888832 22 344556677777766544432 222
Q ss_pred cCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 56 GGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 56 GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
=|| .|.|=.+++-+...+-.++||
T Consensus 79 lGG-DGT~L~aar~~~~~~~PilGI 102 (306)
T PRK03372 79 LGG-DGTILRAAELARAADVPVLGV 102 (306)
T ss_pred EcC-CHHHHHHHHHhccCCCcEEEE
Confidence 234 488777777777777788887
No 92
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=57.05 E-value=41 Score=27.99 Aligned_cols=42 Identities=36% Similarity=0.490 Sum_probs=23.2
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCc
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~ 155 (199)
......|++++ .+|.|+-+.+..+..... .++.|++ +|.++.
T Consensus 73 ~~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvV-lDa~~~ 114 (254)
T cd01171 73 ELLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLV-LDADAL 114 (254)
T ss_pred hhhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEE-EEcHHH
Confidence 33456787665 556887544444333222 2467865 577653
No 93
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=57.04 E-value=32 Score=28.11 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
..-++..||++|... .|+|+ =++|++. .++|++..+..++. ++++ ......++-.+|
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~------~g~pvI~~~~~~~~----~~~~---------~~~~g~~~~~~~ 327 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMA------AGLPVVASDVGGIP----EVVE---------DGETGLLVPPGD 327 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHH------cCCcEEEeCCCChh----HHhc---------CCcceEEeCCCC
Confidence 445567899877543 23332 2455555 68999987764332 2111 111223333445
Q ss_pred HHHHHHHHHhh
Q 029078 186 AHELICKLESK 196 (199)
Q Consensus 186 ~ee~~~~l~~~ 196 (199)
++++.+.|.+.
T Consensus 328 ~~~l~~~i~~~ 338 (374)
T cd03801 328 PEALAEAILRL 338 (374)
T ss_pred HHHHHHHHHHH
Confidence 78887777654
No 94
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=57.01 E-value=29 Score=25.07 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCEEEEecC---CcCcHHHHHHHHHHHHcCCCCCcEE
Q 029078 105 HQRKAEMARQADAFIALPG---GYGTLEELLEVITWAQLGIHDKPVG 148 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpG---G~GTl~Ei~~~~~~~~~~~~~kPvv 148 (199)
..+...++..||+++.||| +-|...|...+-. .++||+
T Consensus 50 m~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~------lGl~V~ 90 (92)
T PF14359_consen 50 MRICLAMLSDCDAIYMLPGWENSRGARLEHELAKK------LGLPVI 90 (92)
T ss_pred HHHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHH------CCCeEe
Confidence 4556667779999999998 4599999987665 466665
No 95
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=57.00 E-value=63 Score=28.11 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEe-cCCcchHHHHHHHHHHHcCCCCcccccceE
Q 029078 105 HQRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLN-VDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~-~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (199)
.+...-+...+|++|.-.- |+| .=+.|+++ .++||+..+ .+| ..+ ++..| ....++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~--~~~lEAma------~G~Pvv~s~~~~g-~~e-------iv~~~-----~~G~lv 306 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFP--MTLLEAMS------YGIPCISSDCMSG-PRD-------IIKPG-----LNGELY 306 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcC--hHHHHHHH------cCCCEEEeCCCCC-hHH-------HccCC-----CceEEE
Confidence 3444445677899885433 333 24566666 789999987 444 222 22221 122344
Q ss_pred EcCCHHHHHHHHHhhh
Q 029078 182 SAQTAHELICKLESKA 197 (199)
Q Consensus 182 ~~~d~ee~~~~l~~~~ 197 (199)
-.+|++++.+.|.++.
T Consensus 307 ~~~d~~~la~~i~~l~ 322 (359)
T PRK09922 307 TPGNIDEFVGKLNKVI 322 (359)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4578899888887654
No 96
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=56.99 E-value=12 Score=28.01 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=23.6
Q ss_pred HHHhcCE--EEEecCCcCcHHHHHHHHHHHHcCCC-CCcEEEE
Q 029078 111 MARQADA--FIALPGGYGTLEELLEVITWAQLGIH-DKPVGLL 150 (199)
Q Consensus 111 ~v~~sDa--~IvlpGG~GTl~Ei~~~~~~~~~~~~-~kPvvll 150 (199)
.....+. .|+.-||=||++|+...+. ..... ..|+.++
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~--~~~~~~~~~l~ii 88 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLM--GSDREDKPPLGII 88 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHC--TSTSSS--EEEEE
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHh--hcCCCccceEEEe
Confidence 3444544 8888899999999987663 11111 2267676
No 97
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=56.92 E-value=1.3e+02 Score=25.99 Aligned_cols=107 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred HhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC
Q 029078 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT 91 (199)
Q Consensus 13 ~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~ 91 (199)
......-++=|.+....-.++. ...-+-.+.|.+.|+.++ |-.- -+ ..++...+.|-..+ .|-. .|...
T Consensus 88 ~~~~~~iKlEVi~d~~~Llpd~--~~tv~aa~~L~~~Gf~vlpyc~d--d~--~~ar~l~~~G~~~v--mPlg-~pIGs- 157 (248)
T cd04728 88 ALGTDWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFTVLPYCTD--DP--VLAKRLEDAGCAAV--MPLG-SPIGS- 157 (248)
T ss_pred HhCCCeEEEEEecCccccccCH--HHHHHHHHHHHHCCCEEEEEeCC--CH--HHHHHHHHcCCCEe--CCCC-cCCCC-
Confidence 3344445777886555433322 234566788889999998 7653 23 33455555666655 4411 11111
Q ss_pred CCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 029078 92 GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (199)
Q Consensus 92 ~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~ 136 (199)
...+. + .+.-..+.+..+.-|+..||++|.+++..++.
T Consensus 158 g~Gi~------~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 158 GQGLL------N-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred CCCCC------C-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 11111 1 33333566668999999999999999998876
No 98
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.73 E-value=63 Score=28.27 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=38.3
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe------------------------------EEEcCCCcChhHH
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------LVYGGGSIGLMGL 65 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~------------------------------lv~GGg~~GlM~a 65 (199)
+++++|+++.- . ..+...+.+.++.++|.++|+. +++=|| .|.+-.
T Consensus 3 ~~~~~i~iv~~--~-~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGG-DGT~L~ 78 (292)
T PRK03378 3 NHFKCIGIVGH--P-RHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGG-DGNMLG 78 (292)
T ss_pred ccCCEEEEEEe--C-CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECC-cHHHHH
Confidence 44677888832 2 2455566777777777554432 223344 488877
Q ss_pred HHHHHHhcCCeEEEE
Q 029078 66 VSQAVYDGGRHVLGV 80 (199)
Q Consensus 66 ~a~gA~~~gg~viGv 80 (199)
+++.+...+-.++||
T Consensus 79 aa~~~~~~~~Pilgi 93 (292)
T PRK03378 79 AARVLARYDIKVIGI 93 (292)
T ss_pred HHHHhcCCCCeEEEE
Confidence 777776666677887
No 99
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=56.65 E-value=53 Score=26.72 Aligned_cols=83 Identities=27% Similarity=0.242 Sum_probs=45.3
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHH-cCCCCCcEEEEecCCcc----h--HHHHHHH-HHHHcCCCCcccccceE-E
Q 029078 112 ARQADAFIALPGGYGTLEELLEVITWAQ-LGIHDKPVGLLNVDGYY----N--SLLSFID-KAVDEGFIAPAARYIIV-S 182 (199)
Q Consensus 112 v~~sDa~IvlpGG~GTl~Ei~~~~~~~~-~~~~~kPvvll~~~g~w----~--~l~~~l~-~~~~~g~i~~~~~~~i~-~ 182 (199)
-+..++.|+|+||. |...+++.+.-.. .+..-+.|.+++.+.+| + .-..+++ .+.+..-|+++....+. -
T Consensus 18 ~~~~~~~i~LsgGs-tp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~ 96 (199)
T PF01182_consen 18 AERGRAVIALSGGS-TPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLLDPLPIPPENIHPIDGE 96 (199)
T ss_dssp HHCSSEEEEE--SC-THHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTGGGSGGGGGGEETSSTT
T ss_pred HHCCCEEEEEcCCH-HHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhhccCCCCcceEEeCCCC
Confidence 46688999999994 5567777666443 12233678888887777 1 2233333 34443333333222222 1
Q ss_pred cCCHHHHHHHHHh
Q 029078 183 AQTAHELICKLES 195 (199)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (199)
.+|+++..+.+.+
T Consensus 97 ~~~~~~~~~~y~~ 109 (199)
T PF01182_consen 97 ADDPEEAAERYEQ 109 (199)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4577777777654
No 100
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=56.42 E-value=1.3e+02 Score=25.81 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
..-..++..||.+|.=+| |..+|.+ . .++|++.++.
T Consensus 269 ~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~~ 304 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLRD 304 (363)
T ss_pred HHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeCC
Confidence 445566788999986555 5544443 2 5799999864
No 101
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=56.40 E-value=17 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=30.0
Q ss_pred ccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE-EcC
Q 029078 17 RFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGG 57 (199)
Q Consensus 17 ~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GG 57 (199)
++++|++||||=.+...-+...|+++.+.+...-...+ ++.
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 46799999999888777777788888887776553333 443
No 102
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=55.93 E-value=1.3e+02 Score=25.87 Aligned_cols=108 Identities=21% Similarity=0.295 Sum_probs=58.5
Q ss_pred HHHHHHhCCC--eEEEcCCCcCh--hHHHHHHHHh-cC--CeEEEEeCCCC--------CCCCCCCCCCceeeecC----
Q 029078 42 LGKQLVERNI--DLVYGGGSIGL--MGLVSQAVYD-GG--RHVLGVIPKTL--------MPREITGDTVGEVKAVS---- 102 (199)
Q Consensus 42 lG~~lA~~G~--~lv~GGg~~Gl--M~a~a~gA~~-~g--g~viGv~P~~~--------~~~e~~~~~~~~~~~~~---- 102 (199)
.+-.+|+.|+ .+|++|=+ |+ |.++.-.+.+ .| ..=+=|+|..- +.....|+ ++.+-..+
T Consensus 64 ~AielA~~G~~ValVSsGDp-gVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hD-F~~ISLSDlLtP 141 (249)
T COG1010 64 EAIELAAEGRDVALVSSGDP-GVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHD-FCVISLSDLLTP 141 (249)
T ss_pred HHHHHHhcCCeEEEEeCCCc-cHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccc-eEEEEhHhcCCc
Confidence 3445666655 56888866 98 6555555555 44 23456677532 11112222 22222222
Q ss_pred -CHHHHHHHHHHhcCEEEEe--cCCcC---cHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 103 -GMHQRKAEMARQADAFIAL--PGGYG---TLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 103 -~m~~R~~~~v~~sDa~Ivl--pGG~G---Tl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
.--++.......+|.+|+| |=+-+ -+.+.++++. ++.....||++...-
T Consensus 142 we~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~--~~r~~~tpVgivrna 196 (249)
T COG1010 142 WEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILR--EHRSPDTPVGIVRNA 196 (249)
T ss_pred HHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHH--HhcCCCCcEEEEecC
Confidence 2235555567889988887 55555 4455555543 344456899998543
No 103
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=55.85 E-value=22 Score=32.69 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=50.5
Q ss_pred CeEEEcCCCcChhHHHHHHHHh--------------------cCCeEEEEeCCCCCCCCCCC-CCCceeeecCCHHHHHH
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYD--------------------GGRHVLGVIPKTLMPREITG-DTVGEVKAVSGMHQRKA 109 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~--------------------~gg~viGv~P~~~~~~e~~~-~~~~~~~~~~~m~~R~~ 109 (199)
|.|.+|-|| |+.+--.+-+.+ .+|++.||--+.+.|..... ++... .+..+|
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR-~~~GdF----- 213 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSR-EVVGDF----- 213 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccc-eeecce-----
Confidence 678899998 999888877776 25677787433333221110 11111 111222
Q ss_pred HHHHhcCEEEEecCCcCcHHHHH-HHHHHHHcCC
Q 029078 110 EMARQADAFIALPGGYGTLEELL-EVITWAQLGI 142 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~-~~~~~~~~~~ 142 (199)
--++.++||-.||+|--.|+. ..|--..+|.
T Consensus 214 --ef~A~aviv~SGGIGGnhelVRrnWP~eRlG~ 245 (552)
T COG3573 214 --EFSASAVIVASGGIGGNHELVRRNWPTERLGR 245 (552)
T ss_pred --EEeeeeEEEecCCcCCCHHHHHhcCchhhcCC
Confidence 245789999999999988887 4554445553
No 104
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=55.58 E-value=47 Score=25.09 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHh----CCC-eEEEcCC---CcChhHHHHHHHHhcCC
Q 029078 36 QLAAIQLGKQLVE----RNI-DLVYGGG---SIGLMGLVSQAVYDGGR 75 (199)
Q Consensus 36 ~~~A~~lG~~lA~----~G~-~lv~GGg---~~GlM~a~a~gA~~~gg 75 (199)
.+.|+.+|+.||+ .|. .++++=+ ..|-+.|+++++.++|-
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 3677888888876 686 5555322 26899999999999874
No 105
>PRK00208 thiG thiazole synthase; Reviewed
Probab=55.56 E-value=1.4e+02 Score=25.87 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=65.9
Q ss_pred HHHhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE-EcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCC
Q 029078 11 AAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV-YGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPRE 89 (199)
Q Consensus 11 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv-~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e 89 (199)
.+......-++=|.+......++. ....+-++.|.+.|+.++ |-.-. + ..++...+.|-..+ .|-. .+..
T Consensus 86 re~~~~~~iKlEVi~d~~~llpd~--~~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v--mPlg-~pIG 156 (250)
T PRK00208 86 REALGTNWIKLEVIGDDKTLLPDP--IETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV--MPLG-APIG 156 (250)
T ss_pred HHHhCCCeEEEEEecCCCCCCcCH--HHHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CCCC-cCCC
Confidence 334444555788886655443322 245667788889999998 76532 3 33444555566655 4411 1111
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 029078 90 ITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (199)
Q Consensus 90 ~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~ 136 (199)
. ...+ .+ .+....+.+..+.-|+..||++|.+++..++.
T Consensus 157 s-g~gi------~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 157 S-GLGL------LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred C-CCCC------CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH
Confidence 1 1111 11 34466666768899999999999999998886
No 106
>PRK13054 lipid kinase; Reviewed
Probab=55.43 E-value=25 Score=30.33 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcC-C--eEEEEeCC
Q 029078 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-R--HVLGVIPK 83 (199)
Q Consensus 40 ~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g-g--~viGv~P~ 83 (199)
.++.+..++.++ .||..|| .|....++.+..... + ..+||+|.
T Consensus 46 ~~~a~~~~~~~~d~vvv~GG-DGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 46 ARYVEEALALGVATVIAGGG-DGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHcCCCEEEEECC-ccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 344444445554 4455666 599888888887642 2 47999994
No 107
>PRK08185 hypothetical protein; Provisional
Probab=54.54 E-value=1.5e+02 Score=25.96 Aligned_cols=100 Identities=12% Similarity=-0.000 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcC-----------hhHHHHHHHHhcCCeEEEEeCCCCCCCC-C
Q 029078 28 SPGKSPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG-----------LMGLVSQAVYDGGRHVLGVIPKTLMPRE-I 90 (199)
Q Consensus 28 ~~~~~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G-----------lM~a~a~gA~~~gg~viGv~P~~~~~~e-~ 90 (199)
+....+++.+.++++-+.....|..| ..||...+ =.+.+.+-..+-|-..+.+.-......- .
T Consensus 100 S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 100 SLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 33446778889999988888877776 22331111 1222333233335555555211111000 0
Q ss_pred C-CCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 91 T-GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 91 ~-~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
. .+.+ + .+|...+.+..|.-+|+-||+|+-+|-+.-.
T Consensus 180 ~~kp~L-------~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~a 217 (283)
T PRK08185 180 DKKPEL-------Q-MDLLKEINERVDIPLVLHGGSANPDAEIAES 217 (283)
T ss_pred CCCCCc-------C-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHH
Confidence 0 0111 1 6778887777899999999999999887533
No 108
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=54.50 E-value=71 Score=28.72 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=33.3
Q ss_pred cCCC-cChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEec
Q 029078 56 GGGS-IGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALP 122 (199)
Q Consensus 56 GGg~-~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~Ivlp 122 (199)
|||. .|.=-.+++-|.+.+-.+++|.|..+. .|.. .....-..-...|.+.+|.+|+++
T Consensus 112 GGGTGSG~apvia~~ake~~~l~vaivt~Pf~-~Eg~-------~r~~nA~~~l~~L~~~~D~vivid 171 (349)
T TIGR00065 112 GGGTGTGAAPVVAKIAKELGALTVAVVTKPFK-FEGL-------KRRKKAEEGLERLKQAVDTLIVIP 171 (349)
T ss_pred cCccchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccch-------hhHHHHHHHHHHHHHhCCEEEEEe
Confidence 4443 355556678888889899999754321 1111 000111233455567788888776
No 109
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=54.36 E-value=33 Score=31.56 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=35.0
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHHH
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~~ 165 (199)
.|+|||..| .-||+|-+.++.++--. .+|||||.+.- --.|...+++..
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVlTGAqrp~~~~~sDa~~NL~~A 193 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVLVGAQRSSDRPSSDAALNLICA 193 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEEECCCCCCCCCCchHHHHHHHH
Confidence 789999886 89999999888764432 37999997542 124566666554
No 110
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=54.29 E-value=44 Score=28.09 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 029078 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (199)
..++..||++|.-...-|.-.=++|++. .++|++..+..+. .++ +.+ ...++-.+|+++
T Consensus 257 ~~~~~~ad~~v~~s~~e~~~~~~~Ea~a------~G~PvI~~~~~~~----~e~---------i~~--~g~~~~~~~~~~ 315 (360)
T cd04951 257 AAYYNAADLFVLSSAWEGFGLVVAEAMA------CELPVVATDAGGV----REV---------VGD--SGLIVPISDPEA 315 (360)
T ss_pred HHHHHhhceEEecccccCCChHHHHHHH------cCCCEEEecCCCh----hhE---------ecC--CceEeCCCCHHH
Confidence 3467889997765432222224667676 6899998765432 111 111 223445578888
Q ss_pred HHHHHHhh
Q 029078 189 LICKLESK 196 (199)
Q Consensus 189 ~~~~l~~~ 196 (199)
+.+.|.+.
T Consensus 316 ~~~~i~~l 323 (360)
T cd04951 316 LANKIDEI 323 (360)
T ss_pred HHHHHHHH
Confidence 87777654
No 111
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.07 E-value=55 Score=30.27 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHh-----CCCeEEEcCCCcC---hhHHHHHHHHhcCC--eEEEEeCCCCCCCCCCCCCCceeeecCCHH-
Q 029078 37 LAAIQLGKQLVE-----RNIDLVYGGGSIG---LMGLVSQAVYDGGR--HVLGVIPKTLMPREITGDTVGEVKAVSGMH- 105 (199)
Q Consensus 37 ~~A~~lG~~lA~-----~G~~lv~GGg~~G---lM~a~a~gA~~~gg--~viGv~P~~~~~~e~~~~~~~~~~~~~~m~- 105 (199)
+.|..+++.+|+ .+...+|||-..| ||.|+...+.+.+- +++.+....+. +++..-+....|.
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~------~~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT------NDFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH------HHHHHHHHhhhHHH
Confidence 567788888887 4567788874333 69999999999875 45554322110 1111111123332
Q ss_pred HHHHHHHHhcCEEEE-----ecCCcCcHHHHHHHHHHHHcCCCCCcEEE
Q 029078 106 QRKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGL 149 (199)
Q Consensus 106 ~R~~~~v~~sDa~Iv-----lpGG~GTl~Ei~~~~~~~~~~~~~kPvvl 149 (199)
-|+.+ +.|.+++ +.|.-.|.+|+|.... .+...+|-|++
T Consensus 170 Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN--~l~~~~kqIvl 213 (408)
T COG0593 170 FKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFN--ALLENGKQIVL 213 (408)
T ss_pred HHHhh---ccCeeeechHhHhcCChhHHHHHHHHHH--HHHhcCCEEEE
Confidence 23333 7887775 7788899999998765 33334554444
No 112
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=53.79 E-value=21 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=26.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 53 (199)
|++|+||-+|..++.+ ..|+.+.+.|...|+.+
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~ 33 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEV 33 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceE
Confidence 5688999899988654 46788888888888776
No 113
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.44 E-value=1.5e+02 Score=25.55 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=17.9
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.|+.-||=||++|+...+. ..+.|+.++
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgii 94 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGII 94 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEE
Confidence 4566777888888876552 134566666
No 114
>PRK13337 putative lipid kinase; Reviewed
Probab=53.34 E-value=31 Score=29.85 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g-g~viGv~P~ 83 (199)
|.++.+.++++++ .||..|| .|....+..+....+ ...+||+|.
T Consensus 46 a~~~a~~~~~~~~d~vvv~GG-DGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 46 ATLAAERAVERKFDLVIAAGG-DGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred HHHHHHHHHhcCCCEEEEEcC-CCHHHHHHHHHhhCCCCCcEEEECC
Confidence 3445555556654 4555566 599999999887654 357999995
No 115
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=53.14 E-value=1.6e+02 Score=25.85 Aligned_cols=95 Identities=16% Similarity=0.080 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh-----------hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~ 95 (199)
-++-.+.++++.+..-..|..| .-||...|+ .+.+.+=+.+-|-..+.|.-...+ -.|
T Consensus 110 ~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H------G~Y 183 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH------GLY 183 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCccc------CCC
Confidence 3445567788888777778777 224433331 233333344445454444211111 111
Q ss_pred ceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 96 GEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 96 ~~~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
.. .+.+ ++|...+-+..|.-+||-||.|+-+|-+.-.
T Consensus 184 ~~---~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ka 221 (286)
T PRK12738 184 SK---TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRT 221 (286)
T ss_pred CC---CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 00 0112 6788888888899999999999999987543
No 116
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=53.03 E-value=38 Score=25.42 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHh----CCCeE-EE--cCC-CcChhHHHHHHHHhcC
Q 029078 37 LAAIQLGKQLVE----RNIDL-VY--GGG-SIGLMGLVSQAVYDGG 74 (199)
Q Consensus 37 ~~A~~lG~~lA~----~G~~l-v~--GGg-~~GlM~a~a~gA~~~g 74 (199)
+.|+.+|+.||+ .|+.= ++ ||. +.|-+.+++++|.++|
T Consensus 61 ~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 61 DASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 578888888886 45433 33 331 3689999999999987
No 117
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=52.83 E-value=59 Score=27.14 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCEEEEec--C--Cc-CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccce
Q 029078 106 QRKAEMARQADAFIALP--G--GY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp--G--G~-GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (199)
+...-++..||++|.-. . |+ ++ +.|++. .++||+..+..+ .+.+. ......+
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a------~G~PvI~~~~~~-~~~i~-------------~~~~g~~ 315 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIG------FGKPVISTPVGH-AEEVL-------------DGGTGLL 315 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHH------cCCCEEecCCCC-hheee-------------eCCCcEE
Confidence 44556678899987432 1 33 34 444554 689999876554 22211 1112233
Q ss_pred EEcCCHHHHHHHHHhh
Q 029078 181 VSAQTAHELICKLESK 196 (199)
Q Consensus 181 ~~~~d~ee~~~~l~~~ 196 (199)
+-.+|++++.+.|...
T Consensus 316 ~~~~d~~~~~~~l~~l 331 (366)
T cd03822 316 VPPGDPAALAEAIRRL 331 (366)
T ss_pred EcCCCHHHHHHHHHHH
Confidence 3345677777776654
No 118
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.64 E-value=69 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=15.5
Q ss_pred cChhHHHHHHHHhcCCeEEEE
Q 029078 60 IGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 60 ~GlM~a~a~gA~~~gg~viGv 80 (199)
.|-|=-+++-+...+-.++||
T Consensus 78 DGTlL~aar~~~~~~iPilGI 98 (305)
T PRK02649 78 DGTVLSAARQLAPCGIPLLTI 98 (305)
T ss_pred cHHHHHHHHHhcCCCCcEEEE
Confidence 488777777666667788887
No 119
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=52.62 E-value=17 Score=27.18 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|+|+|++|....+.+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 467777777766666667899999999999999987
No 120
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=52.58 E-value=1.1e+02 Score=25.92 Aligned_cols=124 Identities=23% Similarity=0.261 Sum_probs=57.2
Q ss_pred EEEcCCCcChhHHH---HHHHHhcC-CeEEEEeCCCCCCC-CCCCCCCceeeecCCH--HHHHHHHHHhcCEEEEecCCc
Q 029078 53 LVYGGGSIGLMGLV---SQAVYDGG-RHVLGVIPKTLMPR-EITGDTVGEVKAVSGM--HQRKAEMARQADAFIALPGGY 125 (199)
Q Consensus 53 lv~GGg~~GlM~a~---a~gA~~~g-g~viGv~P~~~~~~-e~~~~~~~~~~~~~~m--~~R~~~~v~~sDa~IvlpGG~ 125 (199)
+|.||.. +..+|+ +++|++.| |.|.-+.|....+. ....++.. +..-.. ........+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m--~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEAM--VSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTSE--EEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCceeE--EecccchhhhhhHhhhccCCEEEeecC-C
Confidence 4556654 666665 66777776 56666666543211 00112111 111111 1122334577899888776 3
Q ss_pred CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHH
Q 029078 126 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLE 194 (199)
Q Consensus 126 GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~ 194 (199)
|+-++..+.+.... ...+|+ +++-+++| .+.... ......++++-.+-|+-+.+.
T Consensus 78 g~~~~~~~~~~~~~--~~~~p~-VlDADaL~--------~l~~~~---~~~~~~~IlTPH~gE~~rL~~ 132 (242)
T PF01256_consen 78 GRDEETEELLEELL--ESDKPL-VLDADALN--------LLAENP---KKRNAPVILTPHPGEFARLLG 132 (242)
T ss_dssp SSSHHHHHHHHHHH--HHCSTE-EEECHHHH--------CHHHCC---CCSSSCEEEE-BHHHHHHHHT
T ss_pred CCchhhHHHHHHHH--hhcceE-EEehHHHH--------HHHhcc---ccCCCCEEECCCHHHHHHHhC
Confidence 55555333222111 135784 45665432 122211 233456777888877766553
No 121
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.45 E-value=62 Score=28.29 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=38.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC----------------------------CeEEEcCCCcChhHHHHHH
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERN----------------------------IDLVYGGGSIGLMGLVSQA 69 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G----------------------------~~lv~GGg~~GlM~a~a~g 69 (199)
+++|+|+. +.. +...+.+.++.++|.++| +.++.| | .|.|=-+++-
T Consensus 10 ~~~i~ii~--~~~--~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iG-G-DGT~L~aa~~ 83 (287)
T PRK14077 10 IKKIGLVT--RPN--VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLG-G-DGTLISLCRK 83 (287)
T ss_pred CCEEEEEe--CCc--HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEEC-C-CHHHHHHHHH
Confidence 66799993 332 255677888888876544 333444 4 4887777776
Q ss_pred HHhcCCeEEEEe
Q 029078 70 VYDGGRHVLGVI 81 (199)
Q Consensus 70 A~~~gg~viGv~ 81 (199)
+...+-.++||-
T Consensus 84 ~~~~~~PilGIN 95 (287)
T PRK14077 84 AAEYDKFVLGIH 95 (287)
T ss_pred hcCCCCcEEEEe
Confidence 666677888883
No 122
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=52.05 E-value=41 Score=31.14 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.8
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHHH
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~~ 165 (199)
.|+|||..| .-||+|-+.++.++- ..+|||||.+.- --.|...+++..
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVlTGAqrp~~~~~sDa~~NL~~A 205 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVFVGAQRSSDRPSSDAAMNLICA 205 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 799999985 799999999887765 358999998552 134566666554
No 123
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=51.66 E-value=1.2e+02 Score=26.49 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=28.7
Q ss_pred HHHHHHHHHh-----cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEE
Q 029078 105 HQRKAEMARQ-----ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVG 148 (199)
Q Consensus 105 ~~R~~~~v~~-----sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvv 148 (199)
.+|-+-|.+. .|+++..-||.|+. ++..-+.+..+..++|+++
T Consensus 52 ~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fi 99 (308)
T cd07062 52 EERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFI 99 (308)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEE
Confidence 4555544433 58999999999985 4666666666665655543
No 124
>PRK13055 putative lipid kinase; Reviewed
Probab=51.64 E-value=31 Score=30.44 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 029078 40 IQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (199)
Q Consensus 40 ~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g-g~viGv~P~ 83 (199)
.++.+.+++.++ .||..|| .|.+..++.+....+ ...+||+|.
T Consensus 49 ~~~~~~~~~~~~d~vvv~GG-DGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 49 KNEAKRAAEAGFDLIIAAGG-DGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred HHHHHHHhhcCCCEEEEECC-CCHHHHHHHHHhhcCCCCcEEEECC
Confidence 445555555554 4445566 599999999988654 356999995
No 125
>PLN02275 transferase, transferring glycosyl groups
Probab=51.36 E-value=1.3e+02 Score=26.54 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCEEEEec-C--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceE
Q 029078 105 HQRKAEMARQADAFIALP-G--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIV 181 (199)
Q Consensus 105 ~~R~~~~v~~sDa~Ivlp-G--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~ 181 (199)
.+.-..++..||++|+.. . +.|--.=+.|+++ .++||+..+.+| ..+ ++.+| ... +
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA------~G~PVVa~~~gg----~~e----iv~~g-----~~G-~- 355 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFG------CGLPVCAVSYSC----IGE----LVKDG-----KNG-L- 355 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHH------CCCCEEEecCCC----hHH----HccCC-----CCe-E-
Confidence 344456689999998631 2 2233345677776 799999987654 222 33222 112 2
Q ss_pred EcCCHHHHHHHHHhh
Q 029078 182 SAQTAHELICKLESK 196 (199)
Q Consensus 182 ~~~d~ee~~~~l~~~ 196 (199)
+++|++++.+.|.+.
T Consensus 356 lv~~~~~la~~i~~l 370 (371)
T PLN02275 356 LFSSSSELADQLLEL 370 (371)
T ss_pred EECCHHHHHHHHHHh
Confidence 235788888887653
No 126
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.28 E-value=1.7e+02 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
++|..-+-+..|.-+||-||+|+-+|-+.-.
T Consensus 191 ~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a 221 (284)
T PRK09195 191 FDRLENIRQWVNIPLVLHGASGLPTKDIQQT 221 (284)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence 5677777777899999999999999887543
No 127
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=51.16 E-value=65 Score=27.41 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=37.5
Q ss_pred HHHHHHhcCEEEEecC---------CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCccccc
Q 029078 108 KAEMARQADAFIALPG---------GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARY 178 (199)
Q Consensus 108 ~~~~v~~sDa~IvlpG---------G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~ 178 (199)
...++..||++|. |. |+|+ =++|++. .++||+.-+..+.- ++ +......
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~--~~~EA~a------~G~PvI~s~~~~~~----e~---------i~~~~~g 315 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPV--VLLEAQA------SGVPVVATRHGGIP----EA---------VEDGETG 315 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCch--HHHHHHH------cCCCEEEeCCCCch----hh---------eecCCee
Confidence 3446788998765 32 2332 3666666 78999987665421 11 1111112
Q ss_pred ceEEcCCHHHHHHHHHhh
Q 029078 179 IIVSAQTAHELICKLESK 196 (199)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~ 196 (199)
.++-.+|++++.+.|.+.
T Consensus 316 ~~~~~~d~~~l~~~i~~l 333 (367)
T cd05844 316 LLVPEGDVAALAAALGRL 333 (367)
T ss_pred EEECCCCHHHHHHHHHHH
Confidence 233245788877777654
No 128
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.97 E-value=82 Score=27.58 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=16.2
Q ss_pred EEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 54 VYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 54 v~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
++-|| .|.+-.+++.+...+-.++||-
T Consensus 67 i~~GG-DGt~l~~~~~~~~~~~Pvlgin 93 (295)
T PRK01231 67 IVVGG-DGSLLGAARALARHNVPVLGIN 93 (295)
T ss_pred EEEeC-cHHHHHHHHHhcCCCCCEEEEe
Confidence 33444 4766666665555566788873
No 129
>PRK12361 hypothetical protein; Provisional
Probab=50.84 E-value=33 Score=32.42 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
|.++.+..++.|+ .||..|| +|.-..+..+..+. +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GG-DGTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGG-DGTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666666665 4555666 59988888888764 467999994
No 130
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=50.79 E-value=1.7e+02 Score=25.55 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh------------hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL------------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl------------M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~ 94 (199)
-++-.+.++++-+.....|..| ..||...|+ .+.+.+=+.+.|-..+.|.-...+.....
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~--- 185 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKG--- 185 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSS---
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCC---
Confidence 3445567788888887888777 224332232 24445545566777766632222111111
Q ss_pred CceeeecCCH-HHHHHHHHHhc-CEEEEecCCcCcHHHHHHHH
Q 029078 95 VGEVKAVSGM-HQRKAEMARQA-DAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 95 ~~~~~~~~~m-~~R~~~~v~~s-Da~IvlpGG~GTl~Ei~~~~ 135 (199)
- ..+.+ .+|...+-+.. +..+||-||.|+-+|-+.-.
T Consensus 186 ---~-~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 186 ---G-KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp ---S-SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHH
T ss_pred ---C-CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHH
Confidence 0 11223 68888888888 99999999999999977544
No 131
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.69 E-value=1.2e+02 Score=23.59 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.-+...|-.+||.+++-|- .=-.+...+.|.+.+...||+.
T Consensus 19 ~iv~~~l~~~GfeVi~LG~-~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV-LSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred HHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEe
Confidence 4566677789999999985 3668999999999999999993
No 132
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=50.13 E-value=47 Score=29.63 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=36.3
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFIDK 165 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~~ 165 (199)
...|+|||.-| .-||+|-+..+.++... .+|||||-+.- --.|...++.+.
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~A 135 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFMLEN-LGKPVIVTGSQIPLAELRSDGQTNLLNA 135 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHHhC-CCCCEEEeCCCCCCCCCCchHHHHHHHH
Confidence 56799999985 79999999888764432 37999997542 234666666554
No 133
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=50.08 E-value=1.9e+02 Score=25.75 Aligned_cols=93 Identities=13% Similarity=0.030 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh-----------hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCc
Q 029078 33 PSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~ 96 (199)
++-.+.++++.+..-..|..| ..||...|+ .+.+.+=+.+-|-..+.|.-...+ . .|.
T Consensus 111 eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H--G----~Yk 184 (307)
T PRK05835 111 EENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH--G----AFK 184 (307)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc--c----ccC
Confidence 444567788888777788777 224433331 233444344455555554211111 0 000
Q ss_pred eeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHH
Q 029078 97 EVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELL 132 (199)
Q Consensus 97 ~~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~ 132 (199)
. .-.+.+ ++|..-+-+..+.-+||-||.|+-+|+.
T Consensus 185 ~-~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~ 220 (307)
T PRK05835 185 F-KGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVR 220 (307)
T ss_pred C-CCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHh
Confidence 0 000112 6788778788899999999999999844
No 134
>PRK06756 flavodoxin; Provisional
Probab=49.98 E-value=28 Score=26.59 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 53 (199)
++|.|+.+|..++.. +.|+.+++.|.+.|+.+
T Consensus 2 mkv~IiY~S~tGnTe---~vA~~ia~~l~~~g~~v 33 (148)
T PRK06756 2 SKLVMIFASMSGNTE---EMADHIAGVIRETENEI 33 (148)
T ss_pred ceEEEEEECCCchHH---HHHHHHHHHHhhcCCeE
Confidence 466666677766444 35666666666555543
No 135
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.95 E-value=1.8e+02 Score=25.51 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcC---------hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G---------lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~ 97 (199)
-++-.+..+++-+.....|..| ..||...| =.+.+.+=+.+.|-..+.|.-... |-.|..
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~------HG~Y~~ 183 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV------HGLEDI 183 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc------ccCCCC
Confidence 3344567777777777778776 22332222 123334444444544433311110 111111
Q ss_pred eeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 029078 98 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEV 134 (199)
Q Consensus 98 ~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~ 134 (199)
+.+ ++|...+-+..|.-+||-||.|+-+|-+..
T Consensus 184 ----p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ 217 (283)
T PRK07998 184 ----PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRS 217 (283)
T ss_pred ----CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHH
Confidence 222 578888888899999999999999887743
No 136
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=49.85 E-value=48 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 108 KAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 108 ~~~~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
..-++..||++|.-.. |+|. =++|+++ .++||+..+..+
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a------~g~PvI~~~~~~ 300 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAMA------SGLPVVAPDAGG 300 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHHH------cCCCEEEcCCCC
Confidence 3456788998774321 2232 2556665 789999876554
No 137
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.78 E-value=61 Score=24.89 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
.-+.-+...|...||.|++-|.. =-.+.+++.|.+.+..+|++
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~i 59 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGV 59 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 34455667788899999999875 66788999999999999999
No 138
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.30 E-value=40 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCC----eEEEEeCC
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGR----HVLGVIPK 83 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg----~viGv~P~ 83 (199)
.|+..|| .|....+..+..+... ..+|++|.
T Consensus 52 ~vvv~GG-DGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 52 RVLVCGG-DGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred EEEEEcc-ccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 5555566 4999888888876654 46999885
No 139
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=49.14 E-value=85 Score=27.48 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 106 QRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
+....++..||++|.- ..|+|. =+.|++. .++||+..+..|
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~--~~lEAma------~G~Pvi~~~~~~ 336 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGL--VAMEAQA------CGTPVVAARVGG 336 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcCh--HHHHHHH------cCCCEEEecCCC
Confidence 4455678999998764 356665 2566665 689999877654
No 140
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=48.98 E-value=56 Score=26.91 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHhcCEEEEecCCc-CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 029078 110 EMARQADAFIALPGGY-GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~-GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (199)
-++..||++|. |... |.-.=+.|++. .++|++.-+..+. .+++++ .| .++-.+|+++
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a------~g~PvI~~~~~~~----~e~~~~---~g--------~~~~~~~~~~ 321 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMA------CGLPVVATDVGDN----AELVGD---TG--------FLVPPGDPEA 321 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHh------cCCCEEEcCCCCh----HHHhhc---CC--------EEeCCCCHHH
Confidence 45788998775 4322 11112455565 6899998765432 222211 12 2334467777
Q ss_pred HHHHHHhh
Q 029078 189 LICKLESK 196 (199)
Q Consensus 189 ~~~~l~~~ 196 (199)
+.+.|.+.
T Consensus 322 l~~~i~~l 329 (365)
T cd03807 322 LAEAIEAL 329 (365)
T ss_pred HHHHHHHH
Confidence 77777654
No 141
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=48.87 E-value=1.5e+02 Score=26.23 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCEEEEecCC---cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 029078 106 QRKAEMARQADAFIALPGG---YGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG---~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w 156 (199)
++-..++..=+|+|+=||= -+++-++..++.... ..++|+++ +.+|.|
T Consensus 93 ~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~--~~dvP~VI-DaDGL~ 143 (306)
T KOG3974|consen 93 DIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR--GKDVPLVI-DADGLW 143 (306)
T ss_pred hHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh--cCCCcEEE-cCCceE
Confidence 4444577888888887762 245666666654322 24689876 788888
No 142
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=48.83 E-value=70 Score=27.44 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 108 KAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 108 ~~~~v~~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
..-++..||+++.- ..|+|.- ++|++. .++||+..+..| ..++ +.++ ....++-.+|
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a------~G~Pvi~s~~~~----~~e~----i~~~-----~~g~~~~~~~ 354 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMA------CGLPVVATAVGG----PRDI----VVDG-----VTGLLVDPRD 354 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHh------cCCCEEECCCCC----HHHH----ccCC-----CCeEEeCCCC
Confidence 34457789998743 2445532 566665 789998866543 2222 2111 1122333357
Q ss_pred HHHHHHHHHhh
Q 029078 186 AHELICKLESK 196 (199)
Q Consensus 186 ~ee~~~~l~~~ 196 (199)
++++.+.|.+.
T Consensus 355 ~~~l~~~i~~l 365 (398)
T cd03800 355 PEALAAALRRL 365 (398)
T ss_pred HHHHHHHHHHH
Confidence 88777777654
No 143
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=48.74 E-value=18 Score=30.60 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=28.9
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 029078 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~ 158 (199)
.-+++.||++|.+-+..|= |++. ++|||++++.. ||+.
T Consensus 194 ~~Ll~~s~~VvtinStvGl-----EAll------~gkpVi~~G~~-~Y~~ 231 (269)
T PF05159_consen 194 YELLEQSDAVVTINSTVGL-----EALL------HGKPVIVFGRA-FYAG 231 (269)
T ss_pred HHHHHhCCEEEEECCHHHH-----HHHH------cCCceEEecCc-ccCC
Confidence 3568999999999998774 4443 79999999765 5553
No 144
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=48.51 E-value=43 Score=27.11 Aligned_cols=124 Identities=18% Similarity=0.229 Sum_probs=62.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe---EEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID---LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~---lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~ 94 (199)
++.+-|-+|+..=.+=.-.-.+.+.-+.|-++|++ |=.|=|..+.-+.. +.+...+|.+|-.. + +
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~-~~~~k~~gl~id~y-~-f--------- 70 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPI-DLIRKNGGLTIDGY-D-F--------- 70 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHH-HhhcccCCeEEEEE-e-c---------
Confidence 45667777775421111122345566777788775 33455532333333 33334444433220 0 0
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE-ecCCcchHHHHHHHHHHHcCCCC
Q 029078 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYNSLLSFIDKAVDEGFIA 173 (199)
Q Consensus 95 ~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll-~~~g~w~~l~~~l~~~~~~g~i~ 173 (199)
.+.+ +.. ++.||. |+=.+|.||.-|.. . .+||.+++ |.+=+=+.=.+..+.+.++|++-
T Consensus 71 ------~psl---~e~-I~~Adl-VIsHAGaGS~letL---~------l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~ 130 (170)
T KOG3349|consen 71 ------SPSL---TED-IRSADL-VISHAGAGSCLETL---R------LGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY 130 (170)
T ss_pred ------CccH---HHH-HhhccE-EEecCCcchHHHHH---H------cCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE
Confidence 1111 111 344554 45678999976664 3 57998876 43322233445456788888753
No 145
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=48.48 E-value=40 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcC------CeEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG------RHVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g------g~viGv~P~ 83 (199)
|+++.+.++..++ .||.-|| .|..-.+..|-.... ...+||+|.
T Consensus 157 A~~la~~~~~~~~D~VV~vGG-DGTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 157 AKEVVRTMDLSKYDGIVCVSG-DGILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHhhhcCCCEEEEEcC-CCHHHHHHHHHhhCccccccccCceEEecC
Confidence 4556666666665 3555666 599999999887542 356999995
No 146
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=48.32 E-value=36 Score=30.13 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=31.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
|.+|+|++|....+.+.=...|+.+.+.|.+.||.++.-
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 357888888777767766789999999999999998644
No 147
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=47.98 E-value=64 Score=27.79 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHH
Q 029078 111 MARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHE 188 (199)
Q Consensus 111 ~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee 188 (199)
++..||++|...- |+|. =+.|++. +++|||..+.+..-. + ++.. .....++-.+|+++
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma------~G~PvI~~~~~~g~~---~----~v~~-----~~~G~lv~~~d~~~ 334 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALS------HGLPVISYDVNYGPS---E----IIED-----GENGYLVPKGDIEA 334 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHh------CCCCEEEecCCCCcH---H----Hccc-----CCCceEeCCCcHHH
Confidence 4677998887652 4442 3566666 789999987652111 1 1211 11222332347888
Q ss_pred HHHHHHhhh
Q 029078 189 LICKLESKA 197 (199)
Q Consensus 189 ~~~~l~~~~ 197 (199)
+.+.|..+.
T Consensus 335 la~~i~~ll 343 (372)
T cd04949 335 LAEAIIELL 343 (372)
T ss_pred HHHHHHHHH
Confidence 777776543
No 148
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=47.98 E-value=2.1e+02 Score=25.70 Aligned_cols=70 Identities=16% Similarity=0.120 Sum_probs=40.1
Q ss_pred cCEEE-EecCCcCcHHHHHHHHHHHHcCC-CCCcEEEEecCC-cchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHH
Q 029078 115 ADAFI-ALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELIC 191 (199)
Q Consensus 115 sDa~I-vlpGG~GTl~Ei~~~~~~~~~~~-~~kPvvll~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~ 191 (199)
.|+++ .++||+.-.+++.+.+....-.. .+||+++-. .| -.+...+ .+.+.|+ .+.+++|++++++
T Consensus 311 vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~-~g~~~~~~~~---~L~~~G~-------~ip~~~~~~~Av~ 379 (386)
T TIGR01016 311 VKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRL-EGTNVEEGKK---ILAESGL-------NIIFATSMEEAAE 379 (386)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-CCccHHHHHH---HHHHcCC-------CccccCCHHHHHH
Confidence 45554 45788877788887665433222 248995533 33 2222222 2334342 2557899999998
Q ss_pred HHHh
Q 029078 192 KLES 195 (199)
Q Consensus 192 ~l~~ 195 (199)
...+
T Consensus 380 ~~~~ 383 (386)
T TIGR01016 380 KAVE 383 (386)
T ss_pred HHHH
Confidence 7754
No 149
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=47.64 E-value=1e+02 Score=25.39 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 107 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 107 R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
...-++..||++|.-. .|+|+ =+.|++. .++|+|..+..|
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~--~~~Eama------~G~PvI~~~~~~ 315 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGI--VVAEALA------CGTPVVTTDKVP 315 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCc--HHHHHHh------cCCCEEEcCCCC
Confidence 3444567899987644 45555 3566666 789999976554
No 150
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.28 E-value=35 Score=29.60 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
++|+|+. +.+ .+.-.+.+.++.++|.++|+.+..-
T Consensus 1 m~v~iv~--~~~-k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 1 MRFGIVA--RRD-KEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred CEEEEEe--cCC-CHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 3688883 333 3555678899999999999987753
No 151
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=47.11 E-value=35 Score=30.88 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.7
Q ss_pred CEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 116 Da~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
|+||+..| .-||+|-+..+.++.. .+|||||.+.
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~--~~kPVVlTGa 135 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLN--TPKPVVLTGA 135 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhc--CCCCEEEeCC
Confidence 88888875 7999999988877665 3899999754
No 152
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=46.82 E-value=2e+02 Score=25.16 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh-----------hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-----------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl-----------M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~ 95 (199)
-++-.+.++++.+..-..|..| ..||...|+ .+.+.+=+.+-|-..+.|.-...+ -.|
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~H------G~y 183 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAH------GLY 183 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccc------ccc
Confidence 3444567788888777778777 224443342 133444344455444444211111 001
Q ss_pred ceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 96 GEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 96 ~~~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
.. .+.+ ++|..-+-+..|.-+||-||.|+-+|-+.-.
T Consensus 184 ~~---~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~ka 221 (284)
T PRK12737 184 KG---EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKA 221 (284)
T ss_pred CC---CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 00 0111 5677777777799999999999999987543
No 153
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=46.46 E-value=61 Score=23.71 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 141 GIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 141 ~~~~kPvvll~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
+.+-+|++.++.+|.-+.+++.++. +-.+..|.-.....- -+|..|+.+.|++
T Consensus 13 ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~ 66 (95)
T TIGR00253 13 AHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVK 66 (95)
T ss_pred hCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHH
Confidence 3345899999999999999999875 666666664422211 2455666666653
No 154
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=46.30 E-value=97 Score=26.05 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=39.7
Q ss_pred HHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcC
Q 029078 108 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp---GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (199)
...++..||++|... .|+|+ =++|++. .++|+|..+..+. ..+ +.++. ...++-.+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a------~G~PvI~~~~~~~-~e~-------i~~~~-----~g~~~~~~ 315 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQA------MGRPVIASDHGGA-RET-------VRPGE-----TGLLVPPG 315 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHh------cCCCEEEcCCCCc-HHH-------HhCCC-----ceEEeCCC
Confidence 345678899987643 34553 3566666 7899999876542 222 21111 22344457
Q ss_pred CHHHHHHHHH
Q 029078 185 TAHELICKLE 194 (199)
Q Consensus 185 d~ee~~~~l~ 194 (199)
|++++.+.|.
T Consensus 316 ~~~~l~~~i~ 325 (355)
T cd03819 316 DAEALAQALD 325 (355)
T ss_pred CHHHHHHHHH
Confidence 8888888774
No 155
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=45.69 E-value=2e+02 Score=25.27 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=36.6
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC-CCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHH
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT-GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE 129 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~-~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~ 129 (199)
..+|.|+|+.|++ +..-|+..|..++.+........+.. .-..+.++...+- ++-..+....|.+|=.-|+..|++
T Consensus 186 ~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~~ 262 (360)
T PLN02586 186 HLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHALG 262 (360)
T ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHHH
Confidence 4456565544444 45567777888877643321111110 0111222221221 111111123577777767656666
Q ss_pred HHHHH
Q 029078 130 ELLEV 134 (199)
Q Consensus 130 Ei~~~ 134 (199)
+.+..
T Consensus 263 ~~~~~ 267 (360)
T PLN02586 263 PLLGL 267 (360)
T ss_pred HHHHH
Confidence 65543
No 156
>PRK13059 putative lipid kinase; Reviewed
Probab=45.64 E-value=61 Score=27.96 Aligned_cols=32 Identities=31% Similarity=0.748 Sum_probs=22.3
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.| .|+.-||=||++|+...+. +.+ .+.|+.++
T Consensus 57 ~d-~vi~~GGDGTv~evv~gl~--~~~-~~~~lgvi 88 (295)
T PRK13059 57 YK-YILIAGGDGTVDNVVNAMK--KLN-IDLPIGIL 88 (295)
T ss_pred CC-EEEEECCccHHHHHHHHHH--hcC-CCCcEEEE
Confidence 45 5667899999999987663 221 24678777
No 157
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=45.50 E-value=56 Score=26.56 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC-----CCCCCCCCCCcee----eecCCHHHHHHHHH
Q 029078 42 LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL-----MPREITGDTVGEV----KAVSGMHQRKAEMA 112 (199)
Q Consensus 42 lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~-----~~~e~~~~~~~~~----~~~~~m~~R~~~~v 112 (199)
+-+.+...+..|-|||| =+|-.-++.++...|.||-+-.+.. ...+..-+.+.+. ...+-|.+|+.+.-
T Consensus 65 l~~l~~~~~~ViaTGGG--~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 65 LKELLEEDNAVIATGGG--AVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR 142 (172)
T ss_pred HHHHhhcCCeEEECCCc--cccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 34444444566667776 4788888889988888887721110 0111111111111 12344578888876
Q ss_pred HhcCEEEEecCCc
Q 029078 113 RQADAFIALPGGY 125 (199)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (199)
+.+|.++-.....
T Consensus 143 e~a~~~~~~~~~~ 155 (172)
T COG0703 143 EVADFIIDTDDRS 155 (172)
T ss_pred HhCcEEecCCCCc
Confidence 6666655555444
No 158
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=45.34 E-value=36 Score=29.06 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
+|+|.+|+.....+.-.+.++++-+.|.+.||.++.=
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i 42 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI 42 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE
Confidence 6888877766554444467899999999999998543
No 159
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=45.15 E-value=64 Score=23.75 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 141 GIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 141 ~~~~kPvvll~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
+.+-+|++.++.+|.-+.+++.++. +-....|.-..... .-+|..|+.+.|++
T Consensus 15 ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~--~~~~~~e~~~~i~~ 68 (97)
T PRK10343 15 AHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATE--DRETKTLIVEAIVR 68 (97)
T ss_pred cCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCC--ChhHHHHHHHHHHH
Confidence 3345899999999999999999875 66666665332111 11334555555543
No 160
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=44.97 E-value=1.3e+02 Score=24.77 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=27.8
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 029078 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (199)
Q Consensus 112 v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w 156 (199)
-+...+.|+++||. |...+++.+.... ...=+-|.++..+.+|
T Consensus 20 ~~~~~~~l~lsGGs-tp~~~y~~L~~~~-~i~w~~v~~f~~DEr~ 62 (219)
T cd01400 20 AKRGRFSLALSGGS-TPKPLYELLAAAP-ALDWSKVHVFLGDERC 62 (219)
T ss_pred HhcCeEEEEECCCc-cHHHHHHHhcccc-CCCCceEEEEEeeccc
Confidence 34578999999995 6667887765332 1222556666666666
No 161
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=44.60 E-value=2.2e+02 Score=24.98 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcC---------hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G---------lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~ 97 (199)
-++-.+.++++.+.....|..| ..||.-.| =.+.+.+=+.+-|-..+.|.-...+ -.|..
T Consensus 113 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~H------G~Y~~ 186 (286)
T PRK08610 113 FEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVH------GPYKG 186 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccc------cccCC
Confidence 3444567777777777777776 22433223 1233333333444444444211111 00100
Q ss_pred eeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 98 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 98 ~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
.+.+ ++|...+-+..+.-+||-||.|+-+|-+.-.
T Consensus 187 ---~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~a 222 (286)
T PRK08610 187 ---EPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKA 222 (286)
T ss_pred ---CCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Confidence 0122 5677777777899999999999998877533
No 162
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=44.58 E-value=63 Score=28.64 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=19.9
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
|..+|.|.|+.|+|- ...|...|...|=+
T Consensus 170 ~~V~V~GaGpIGLla--~~~a~~~Ga~~Viv 198 (350)
T COG1063 170 GTVVVVGAGPIGLLA--IALAKLLGASVVIV 198 (350)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCceEEE
Confidence 368899999999998 44455556444433
No 163
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=44.57 E-value=2.4e+02 Score=25.54 Aligned_cols=113 Identities=14% Similarity=0.010 Sum_probs=64.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcC--------------hhHHHHHHHHhcCCeEEEEeCCCC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIG--------------LMGLVSQAVYDGGRHVLGVIPKTL 85 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~G--------------lM~a~a~gA~~~gg~viGv~P~~~ 85 (199)
.+.||-||.. ..+..+...++.++.-+.|..++-=-.+.| +...+++-|.+.|...|=+-+...
T Consensus 164 ~~tvy~Gs~~--E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 164 GATIYFGSEE--SRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred EEEEecCCHH--HHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 4677777542 234445555666677778988864111212 566778888889999888843211
Q ss_pred -CCCCC-----CCCCCceeeecCCHHHHHHHHHHhc---CEEEEecCCc-CcHHHHHHH
Q 029078 86 -MPREI-----TGDTVGEVKAVSGMHQRKAEMARQA---DAFIALPGGY-GTLEELLEV 134 (199)
Q Consensus 86 -~~~e~-----~~~~~~~~~~~~~m~~R~~~~v~~s---Da~IvlpGG~-GTl~Ei~~~ 134 (199)
...+. ......+-+..++..+|-+..++.| ..-|++-||. -+.+|+++.
T Consensus 242 ~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~ 300 (348)
T PRK09250 242 NGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDA 300 (348)
T ss_pred hhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHH
Confidence 00000 0011122344567788888888887 5555555554 455566543
No 164
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=44.51 E-value=1.2e+02 Score=24.64 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=24.3
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
.+.+|+.+||+=.-+|-...+. ....+|.|+.+
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~------~~g~vv~L~~~ 104 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLK------KRGIVVYLDAP 104 (172)
T ss_pred CCeEEECCCccccCHHHHHHHH------hCCeEEEEeCC
Confidence 4699999999999888877664 22366666654
No 165
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=43.77 E-value=73 Score=23.16 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHh----CCCeE-EE--cCCC-cChhHHHHHHHHhcC
Q 029078 37 LAAIQLGKQLVE----RNIDL-VY--GGGS-IGLMGLVSQAVYDGG 74 (199)
Q Consensus 37 ~~A~~lG~~lA~----~G~~l-v~--GGg~-~GlM~a~a~gA~~~g 74 (199)
+.|+.+|+.||+ .|..- ++ ||.. .|-+.|+++++.++|
T Consensus 57 ~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 57 EAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 678888888887 33332 22 4433 489999999999976
No 166
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.69 E-value=55 Score=28.88 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=65.9
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC-CCCCCCCCCCCCc
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK-TLMPREITGDTVG 96 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~-~~~~~e~~~~~~~ 96 (199)
|++|+|+.- . ..+...+.+.++.++|.++|+.++..--. +...+ .. . |. ...+ ..++
T Consensus 1 m~~igiv~n--~-~~~~~~~~~~~l~~~L~~~g~~v~~~~~~----------~~~~~-~~--~-~~~~~~~-----~~~~ 58 (305)
T PRK02649 1 MPKAGIIYN--D-GKPLAVRTAEELQDKLEAAGWEVVRASSS----------GGILG-YA--N-PDQPVCH-----TGID 58 (305)
T ss_pred CCEEEEEEc--C-CCHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhcC-cc--c-ccccccc-----cccc
Confidence 467999942 2 24566688999999999999998764311 11111 00 0 00 0000 0000
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHc
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDE 169 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~ 169 (199)
. ... ..+.+.+|.+|++ ||=||+-..+..+. ...+||+=+|.+ ||. +.+.+.|+++.+.
T Consensus 59 ~----~~~----~~~~~~~Dlvi~i-GGDGTlL~aar~~~-----~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 59 Q----LVP----PGFDSSMKFAIVL-GGDGTVLSAARQLA-----PCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred c----cCh----hhcccCcCEEEEE-eCcHHHHHHHHHhc-----CCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcC
Confidence 0 000 1112346766665 67899887765432 357898887765 565 5677777777665
Q ss_pred CC
Q 029078 170 GF 171 (199)
Q Consensus 170 g~ 171 (199)
.|
T Consensus 125 ~y 126 (305)
T PRK02649 125 QY 126 (305)
T ss_pred Cc
Confidence 54
No 167
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=43.69 E-value=1.2e+02 Score=27.20 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=39.0
Q ss_pred HHHHHHhcCEEEEec--------CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccc
Q 029078 108 KAEMARQADAFIALP--------GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYI 179 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp--------GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~ 179 (199)
..-++..||++|.-. -|+| .=+.|++. .++|||.-+.+|. .+ ++.. .....
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p--~~llEAma------~G~PVI~t~~~g~----~E----~v~~-----~~~G~ 350 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIP--VALMEAMA------VGIPVVSTLHSGI----PE----LVEA-----DKSGW 350 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCcc--HHHHHHHh------CCCCEEEeCCCCc----hh----hhcC-----CCceE
Confidence 344678899998632 2333 34667776 7899999876652 22 2221 11122
Q ss_pred eEEcCCHHHHHHHHHhh
Q 029078 180 IVSAQTAHELICKLESK 196 (199)
Q Consensus 180 i~~~~d~ee~~~~l~~~ 196 (199)
++-.+|++++.+.|.++
T Consensus 351 lv~~~d~~~la~ai~~l 367 (406)
T PRK15427 351 LVPENDAQALAQRLAAF 367 (406)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 33346777777777654
No 168
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=43.60 E-value=28 Score=27.20 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCEEEEecCCc--CcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEE
Q 029078 105 HQRKAEMARQADAFIALPGGY--GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~--GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (199)
......++..||++++-+=-+ ||++++.+... ..+++++++++.=+-+- .+.+.|+ .... =..
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~------~~~~vil~GpS~~~~P~-----~l~~~Gv---~~v~-g~~ 117 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR------NAREVILYGPSAPLHPE-----ALFDYGV---TYVG-GSR 117 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT------TSSEEEEESCCGGS-GG-----GGCCTT----SEEE-EEE
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc------cCCeEEEEecCchhhHH-----HHHhCCC---CEEE-EEE
Confidence 455677889999988776444 99999986542 46899999887422220 0122221 0111 134
Q ss_pred cCCHHHHHHHHHh
Q 029078 183 AQTAHELICKLES 195 (199)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (199)
+.|+|.+++.+++
T Consensus 118 v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 118 VVDPEKVLRAISE 130 (147)
T ss_dssp ES-HHHHHHHHCT
T ss_pred EeCHHHHHHHHHc
Confidence 7899999998864
No 169
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=43.51 E-value=1e+02 Score=26.80 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=40.3
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL 85 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~ 85 (199)
++++-|- |++.+ ..+++++.||++|+.|+-=+-..=-+++.++.-.+..|..+=++|-.+
T Consensus 6 ~~~~lIT-GASsG-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 6 GKTALIT-GASSG-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CcEEEEE-CCCch-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 3455555 55554 346788899999999998887655567777766665555566666543
No 170
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=43.46 E-value=53 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
+.|+|++ +..+.... ..|..+++.||++|..++
T Consensus 1 k~i~v~s-~~~g~G~t--~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKT--TLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEEE-SSTTSSHH--HHHHHHHHHHHHTTT-EE
T ss_pred CEEEEEC-CCCCCCHH--HHHHHHHHHHHhcCCCeE
Confidence 3678884 33343433 468889999999886543
No 171
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=43.31 E-value=1.7e+02 Score=25.09 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCC-CCCcEEEE
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGI-HDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~-~~kPvvll 150 (199)
.|+.-||=||++|+...+. ..+. .+.|+.++
T Consensus 55 ~vv~~GGDGTi~ev~ngl~--~~~~~~~~~lgii 86 (293)
T TIGR03702 55 TVIAGGGDGTLREVATALA--QIRDDAAPALGLL 86 (293)
T ss_pred EEEEEcCChHHHHHHHHHH--hhCCCCCCcEEEE
Confidence 6778899999999997763 2211 23578777
No 172
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=43.18 E-value=19 Score=31.17 Aligned_cols=30 Identities=33% Similarity=0.671 Sum_probs=23.8
Q ss_pred HHHHHHHhCCCeEEEcCCCcChhHHHHHHHHh
Q 029078 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (199)
Q Consensus 41 ~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~ 72 (199)
+|+|.|+.+...||.+|| |.=+++.-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378889999999999886 777777777665
No 173
>PRK06703 flavodoxin; Provisional
Probab=43.15 E-value=32 Score=26.33 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 53 (199)
++|.|+.+|..++.. +.|+.+++.|...|+.+
T Consensus 2 mkv~IiY~S~tGnT~---~iA~~ia~~l~~~g~~v 33 (151)
T PRK06703 2 AKILIAYASMSGNTE---DIADLIKVSLDAFDHEV 33 (151)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHhcCCce
Confidence 456666677776444 45777777777666654
No 174
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=43.14 E-value=1.2e+02 Score=28.06 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=50.0
Q ss_pred eeeecCCHH-HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc
Q 029078 97 EVKAVSGMH-QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA 175 (199)
Q Consensus 97 ~~~~~~~m~-~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~ 175 (199)
+.+..+++. .+..-+...||+++-.-=|-|-..=+.++.. +++||+-++.+ +=. ..++.+
T Consensus 329 nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~------~G~pI~afd~t-~~~-----------~~~i~~- 389 (438)
T TIGR02919 329 NVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE------YNLLILGFEET-AHN-----------RDFIAS- 389 (438)
T ss_pred CcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH------cCCcEEEEecc-cCC-----------cccccC-
Confidence 344444543 3677788999998877655555555556665 89999988754 111 112222
Q ss_pred cccceEEcCCHHHHHHHHHhhh
Q 029078 176 ARYIIVSAQTAHELICKLESKA 197 (199)
Q Consensus 176 ~~~~i~~~~d~ee~~~~l~~~~ 197 (199)
..++-.++++++.+.|.+..
T Consensus 390 --g~l~~~~~~~~m~~~i~~lL 409 (438)
T TIGR02919 390 --ENIFEHNEVDQLISKLKDLL 409 (438)
T ss_pred --CceecCCCHHHHHHHHHHHh
Confidence 34566788888888777653
No 175
>PRK13057 putative lipid kinase; Reviewed
Probab=43.06 E-value=54 Score=28.04 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCC-eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 39 AIQLGKQLVERNI-DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 39 A~~lG~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
|.++.+.+. .++ .|+..|| .|....++.+.... +..+||+|.
T Consensus 40 a~~~~~~~~-~~~d~iiv~GG-DGTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 40 LSEVIEAYA-DGVDLVIVGGG-DGTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHH-cCCCEEEEECc-hHHHHHHHHHHhcC-CCcEEEECC
Confidence 344444433 333 4555566 59999999988765 467999994
No 176
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=42.92 E-value=26 Score=30.82 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHh
Q 029078 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~ 72 (199)
++|+++|+.+...||.+|| |+=+.+.-|+++
T Consensus 5 ~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 5 SRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 5689999999999999886 777777777665
No 177
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=42.85 E-value=1.1e+02 Score=25.10 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
+...-++..||++|... .|+|+ =+.|++. .++|++.-+.++. .++ +..+ ....++-.
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~--~~~Ea~~------~G~pvI~~~~~~~----~~~----~~~~-----~~g~~~~~ 328 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGL--VLLEAMA------CGLPVVATDVGGI----PEI----ITDG-----ENGLLVPP 328 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCCh--HHHHHHh------cCCCEEEecCCCh----HHH----hcCC-----cceeEECC
Confidence 34456678899877553 33443 2556665 6899998665432 121 2111 11234445
Q ss_pred CCHHHHHHHHHhh
Q 029078 184 QTAHELICKLESK 196 (199)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (199)
+|++++.+.|.+.
T Consensus 329 ~~~~~l~~~i~~~ 341 (377)
T cd03798 329 GDPEALAEAILRL 341 (377)
T ss_pred CCHHHHHHHHHHH
Confidence 6888887777654
No 178
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=42.80 E-value=1.5e+02 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=17.7
Q ss_pred HHHHcCCCCcc-cccceEEcCCHHHHHHHHH
Q 029078 165 KAVDEGFIAPA-ARYIIVSAQTAHELICKLE 194 (199)
Q Consensus 165 ~~~~~g~i~~~-~~~~i~~~~d~ee~~~~l~ 194 (199)
+++++|-+++. .....+-.++.+++++.+.
T Consensus 301 ~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~ 331 (343)
T PRK09880 301 SWLANGVINPLPLLSAEYPFTDLEEALIFAG 331 (343)
T ss_pred HHHHcCCCCchhheEEEEEHHHHHHHHHHHh
Confidence 45566777653 2233455677777777664
No 179
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=42.77 E-value=59 Score=31.67 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=32.1
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHH
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGL 65 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a 65 (199)
..-..|+|+||| |+.|.+.|..+.+.|-+.|...|+=.|.-+-|+.
T Consensus 544 ~sga~i~viCss----D~~Y~~~a~~~~~al~~ag~~~v~lAG~p~~~~~ 589 (619)
T TIGR00642 544 KAGAQVAVLCSS----DKVYAQQGLEVAKALKAAGAKALYLAGAFKEFGD 589 (619)
T ss_pred hcCCCEEEEeCC----CcchHHHHHHHHHHHHhCCCCEEEEeCCCcchhh
Confidence 344579999987 4689999999999996666544443444355554
No 180
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=42.59 E-value=56 Score=27.72 Aligned_cols=71 Identities=7% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
.+|....+..||.+|+++ |=-.+.-+..+.... .++.|++++|.+.- .++ ...-+++.
T Consensus 169 ~~~~~~~~~~aDl~lviG----TSl~V~pa~~l~~~~~~~g~~~i~iN~~~t---------------~~d--~~~~~~i~ 227 (244)
T PRK14138 169 LREAIRLSSKASLMIVMG----SSLVVYPAAELPLITVRSGGKLVIVNLGET---------------PLD--DIATLKYN 227 (244)
T ss_pred HHHHHHHHhcCCEEEEeC----cCCeeecHhHHHHHHHHcCCeEEEEcCCCC---------------CCC--cceeEEEe
Confidence 466666778899999964 333333333333222 25789999987421 111 11236788
Q ss_pred CCHHHHHHHHHhh
Q 029078 184 QTAHELICKLESK 196 (199)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (199)
.+.+|+++.|.++
T Consensus 228 ~~~~~~l~~l~~~ 240 (244)
T PRK14138 228 MDVVEFANRVMSE 240 (244)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988765
No 181
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=42.55 E-value=2.8e+02 Score=25.62 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=67.7
Q ss_pred HHHHHHh------CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC------CCCCC-CCCCCCCceeeecCC--HHH
Q 029078 42 LGKQLVE------RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK------TLMPR-EITGDTVGEVKAVSG--MHQ 106 (199)
Q Consensus 42 lG~~lA~------~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~------~~~~~-e~~~~~~~~~~~~~~--m~~ 106 (199)
+.+.|+. ++..+|+.+| |.--.+++.+.+.|..+--..|. ..+|. -...|+++ +....+ ...
T Consensus 283 ~~~~l~~~~~~~g~rvaivs~sG--G~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlD-l~~~~~~~~~~ 359 (447)
T TIGR02717 283 LARLLSNQPLPKGNRVAIITNAG--GPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVD-VLGDATPERYA 359 (447)
T ss_pred HHHHHhcCCCCCCCeEEEEECCc--hHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEe-cCCCCCHHHHH
Confidence 4555553 5678888775 66667788888877543222110 00111 11234432 311111 122
Q ss_pred H-HHHHHH--hcCEEEEe--cCCcCcHHHHHHHHHHHHcCCC-CCcEEEEecCCcc-hHHHHHHHHHHHcCCCCcccccc
Q 029078 107 R-KAEMAR--QADAFIAL--PGGYGTLEELLEVITWAQLGIH-DKPVGLLNVDGYY-NSLLSFIDKAVDEGFIAPAARYI 179 (199)
Q Consensus 107 R-~~~~v~--~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~-~kPvvll~~~g~w-~~l~~~l~~~~~~g~i~~~~~~~ 179 (199)
+ -+.+.+ ..|+++++ |++....+++.+.+.-.. ..+ .||++....++.. +...+ .+.+.|
T Consensus 360 ~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~-~~~~~KPvv~~~~gg~~~~~~~~---~L~~~G--------- 426 (447)
T TIGR02717 360 KALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGA-KKSNEKPVVAGFMGGKSVDPAKR---ILEENG--------- 426 (447)
T ss_pred HHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHH-HhcCCCcEEEEecCCccHHHHHH---HHHhCC---------
Confidence 2 222222 25666544 455555566665554321 223 7999554332221 12222 233333
Q ss_pred eEEcCCHHHHHHHHHhh
Q 029078 180 IVSAQTAHELICKLESK 196 (199)
Q Consensus 180 i~~~~d~ee~~~~l~~~ 196 (199)
+-++++++++++.+...
T Consensus 427 ip~f~~p~~A~~al~~~ 443 (447)
T TIGR02717 427 IPNYTFPERAVKALSAL 443 (447)
T ss_pred CCccCCHHHHHHHHHHH
Confidence 45689999999887653
No 182
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=42.41 E-value=1.3e+02 Score=24.72 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEE
Q 029078 106 QRKAEMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVS 182 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivl---pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (199)
+...-++..||++|.- ..|+|. =++|++. .++|++.-+..+. .++ +..+ ....++-
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a------~G~Pvi~~~~~~~----~e~----i~~~-----~~g~~~~ 312 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALA------AGVPVIASDIGGM----AEL----VRDG-----VNGLLFP 312 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHH------CCCCEEECCCCCH----HHH----hcCC-----CcEEEEC
Confidence 4445567889988754 244543 2556665 7899998765432 221 1111 1123444
Q ss_pred cCCHHHHHHHHHhh
Q 029078 183 AQTAHELICKLESK 196 (199)
Q Consensus 183 ~~d~ee~~~~l~~~ 196 (199)
.+|++++.+.+.+.
T Consensus 313 ~~d~~~l~~~i~~l 326 (359)
T cd03823 313 PGDAEDLAAALERL 326 (359)
T ss_pred CCCHHHHHHHHHHH
Confidence 56688888877654
No 183
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=42.39 E-value=2.4e+02 Score=24.74 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhCCCeE-----EEcCCCcC---------hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCcee
Q 029078 33 PSYQLAAIQLGKQLVERNIDL-----VYGGGSIG---------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G---------lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~ 98 (199)
++-.+.++++.+..-..|..| ..||...| =.+.+.+=+.+.|-..+.|.-...+..-...+.+
T Consensus 114 eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L--- 190 (285)
T PRK07709 114 EENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNL--- 190 (285)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCcc---
Confidence 444567777877777778777 22443223 1233333344445444444211111000000111
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
+ ++|...+-+..|.-+||-||.|+-+|-+.-.
T Consensus 191 ----~-~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~a 222 (285)
T PRK07709 191 ----G-FAEMEQVRDFTGVPLVLHGGTGIPTADIEKA 222 (285)
T ss_pred ----C-HHHHHHHHHHHCCCEEEeCCCCCCHHHHHHH
Confidence 1 4677777778899999999999998877533
No 184
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=42.23 E-value=94 Score=28.30 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEc
Q 029078 106 QRKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA 183 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~ 183 (199)
+....++..||++|.-. .|+|. =++|++. .++|||..+.+|. .++ ++.. .......++-.
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~--~vlEAmA------~G~PVI~s~~gg~-~ei-------v~~~--~~~~~G~lv~~ 384 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGF--VVLEAMA------SGVPVVAARAGGI-PDI-------IPPD--QEGKTGFLYTP 384 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCc--HHHHHHH------cCCCEEEcCCCCc-Hhh-------hhcC--CCCCceEEeCC
Confidence 44555678999988532 23443 2556666 7899998776553 221 1110 00112233334
Q ss_pred CCHHHHHHHHHhh
Q 029078 184 QTAHELICKLESK 196 (199)
Q Consensus 184 ~d~ee~~~~l~~~ 196 (199)
+|++++.+.|.+.
T Consensus 385 ~d~~~la~~i~~l 397 (465)
T PLN02871 385 GDVDDCVEKLETL 397 (465)
T ss_pred CCHHHHHHHHHHH
Confidence 6788877777654
No 185
>PRK12359 flavodoxin FldB; Provisional
Probab=42.11 E-value=67 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.7
Q ss_pred HHHHHHhcCCeEEEEeCC
Q 029078 66 VSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 66 ~a~gA~~~gg~viGv~P~ 83 (199)
..+-..+.|+.+||-.|.
T Consensus 104 l~~~l~~~Ga~ivG~~~~ 121 (172)
T PRK12359 104 LHDKLAPKGVKFVGYWPT 121 (172)
T ss_pred HHHHHHhCCCeEEeeEeC
Confidence 333333455555555543
No 186
>PRK08862 short chain dehydrogenase; Provisional
Probab=42.05 E-value=1.3e+02 Score=24.49 Aligned_cols=54 Identities=6% Similarity=-0.029 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
+.+.|.|+|+ + ..+.+++.|+++|+.|+.-+....-.+...+...+.++.+..+
T Consensus 6 k~~lVtGas~-G-------IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS-V-------LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc-H-------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 4667776654 2 3566788888889988765443233333344344445554443
No 187
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.64 E-value=1e+02 Score=25.64 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=54.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCC---
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITG--- 92 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l--v~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~--- 92 (199)
-+.|.|+=+. ++ +.+.++++.|.+.|+.+ ||=-.+ +..++..+-..+.+...||.= .....++..
T Consensus 8 ~~liaVlr~~----~~---e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG--TVl~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRID----DV---DDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG--TVLNPEQLRQAV 77 (204)
T ss_pred CCEEEEEecC----CH---HHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE--eCCCHHHHHHHH
Confidence 3467777221 22 45677888888877766 232233 666666655555555667762 111111110
Q ss_pred CCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 029078 93 DTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (199)
Q Consensus 93 ~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~ 136 (199)
+-=.+.++.+++.. ...-...-..+.++| |.-|..|+..+|.
T Consensus 78 ~aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~ 119 (204)
T TIGR01182 78 DAGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALE 119 (204)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHH
Confidence 00113344444421 222222233466777 6678888887775
No 188
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=41.63 E-value=1.3e+02 Score=24.97 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHhcCEEEEec---CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 108 KAEMARQADAFIALP---GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp---GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
...++..+|++|... .|+|. =++|+++ .++|||.-+.+|
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~--~~lEAma------~G~PvI~~~~~~ 278 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGL--VMIEAMA------CGTPVIAFRRGA 278 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcch--HHHHHHh------cCCCEEEeCCCC
Confidence 345578899988753 56665 3667776 789999987764
No 189
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=41.07 E-value=32 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred HcCCCCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 139 QLGIHDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 139 ~~~~~~kPvvll~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
..+.+-+|++.++.+|.++.+.+.++. +-.+..+.-.... ..-+|.+++.+.|.+
T Consensus 11 ~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~--~~~~~~~~~~~~l~~ 66 (84)
T PF01985_consen 11 KLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLG--NCREDRKEIAEQLAE 66 (84)
T ss_dssp HHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT----HHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEcc--CCHHHHHHHHHHHHH
Confidence 333455899999999999999998875 5554444422222 123345555555543
No 190
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.75 E-value=72 Score=27.87 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=33.4
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
.+|.+|++ ||=||+--.+..+ ...++||+=+|.+ ||. +.+.+.++++.+..|
T Consensus 64 ~~Dlvi~i-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 64 ISDFLISL-GGDGTLISLCRKA-----AEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEF 122 (287)
T ss_pred CCCEEEEE-CCCHHHHHHHHHh-----cCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCC
Confidence 46765555 7789977665433 2357898877765 565 566677777665443
No 191
>PRK09271 flavodoxin; Provisional
Probab=40.66 E-value=39 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 53 (199)
+|.|+.+|..++.+ +.|+.+++.|.+.|+.+
T Consensus 2 kv~IvY~S~tGnTe---~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 2 RILLAYASLSGNTR---EVAREIEERCEEAGHEV 32 (160)
T ss_pred eEEEEEEcCCchHH---HHHHHHHHHHHhCCCee
Confidence 55666677777544 46777777777777654
No 192
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.07 E-value=1.3e+02 Score=25.61 Aligned_cols=33 Identities=33% Similarity=0.604 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 162 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~ 162 (199)
||+.+++......-.-...||+|+ |||++++.+
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLm---gYYNPIl~y 110 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILM---GYYNPILRY 110 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeee---ecccHHHhh
Confidence 788888766544333245899998 599998775
No 193
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=39.88 E-value=80 Score=26.57 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcC
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (199)
..+....++.||.+|+++=.. ++.-+..+...-..+.|++++|.+.- + + +.....-+++..
T Consensus 166 ~~~~~~~~~~aDlllvvGTSl----~V~pa~~l~~~~~~~~~~v~iN~~~~--~------------~-~~~~~~d~~~~~ 226 (235)
T cd01408 166 FSHMEEDKEEADLLIVIGTSL----KVAPFASLPSRVPSEVPRVLINREPV--G------------H-LGKRPFDVALLG 226 (235)
T ss_pred HHHHHHHHhcCCEEEEECCCC----eeccHHHHHHHHhCCCcEEEEeCCCC--C------------C-CCCCCcCEEEeC
Confidence 455556678899999965332 22222222222224689999986521 0 0 000112367888
Q ss_pred CHHHHHHHH
Q 029078 185 TAHELICKL 193 (199)
Q Consensus 185 d~ee~~~~l 193 (199)
+.+|+++.|
T Consensus 227 ~~~~~l~~~ 235 (235)
T cd01408 227 DCDDGVREL 235 (235)
T ss_pred CHHHHHHhC
Confidence 898888754
No 194
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=39.60 E-value=92 Score=25.25 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred hcCEEEEecCCcCcHHHHHHHHH-------HHHcCCCCCcEEEE
Q 029078 114 QADAFIALPGGYGTLEELLEVIT-------WAQLGIHDKPVGLL 150 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~-------~~~~~~~~kPvvll 150 (199)
.+|++|+.|-...|+.-+..=++ ..+....++|++++
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~ 121 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIM 121 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEE
Confidence 47999999999999988864321 11112357899887
No 195
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=39.59 E-value=82 Score=26.83 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=25.3
Q ss_pred HHhCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 029078 46 LVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (199)
Q Consensus 46 lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g-g~viGv~P~ 83 (199)
.++.++ .||.-|| .|....++++..... ...+|++|.
T Consensus 53 ~~~~~~d~ivv~GG-DGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 53 ARKFGVDTVIAGGG-DGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHhcCCCEEEEECC-CChHHHHHHHHhcCCCCCcEEEEcC
Confidence 334443 4555566 599999999987643 347999985
No 196
>PRK13337 putative lipid kinase; Reviewed
Probab=39.18 E-value=1.9e+02 Score=24.97 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.|+.-||=||++|+...+. +.+ ...|+.++
T Consensus 60 ~vvv~GGDGTl~~vv~gl~--~~~-~~~~lgii 89 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIA--EKE-NRPKLGII 89 (304)
T ss_pred EEEEEcCCCHHHHHHHHHh--hCC-CCCcEEEE
Confidence 5778899999999997653 111 23577776
No 197
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=38.99 E-value=56 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
++|+|.+|......+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 478888777776677667899999999999999986
No 198
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=38.98 E-value=29 Score=32.00 Aligned_cols=27 Identities=44% Similarity=0.743 Sum_probs=19.3
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
.+|-|||+.|+|-|+..+- +|.+|+=+
T Consensus 6 viIIGgGpAGlMaA~~aa~--~G~~V~li 32 (408)
T COG2081 6 VIIIGGGPAGLMAAISAAK--AGRRVLLI 32 (408)
T ss_pred EEEECCCHHHHHHHHHHhh--cCCEEEEE
Confidence 4577999999998887544 56555544
No 199
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=38.82 E-value=56 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
++|+|.+|....+.+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 378888777776666666889999999999999885
No 200
>PRK13937 phosphoheptose isomerase; Provisional
Probab=38.51 E-value=1e+02 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEcCCCcCh
Q 029078 32 SPSYQLAAIQLGKQLVERNIDLVYGGGSIGL 62 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~lv~GGg~~Gl 62 (199)
.+...+.|.++.+.|.+.+...++|-|..+.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 3677788999999999999999999887554
No 201
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=38.50 E-value=1.3e+02 Score=25.24 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=39.3
Q ss_pred HHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 029078 108 KAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (199)
Q Consensus 108 ~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (199)
..-++..||++|.-.---|.-.=+.|+++ .++|||.-+..|. .+.+.+ ....+...++++
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma------~G~PvI~s~~~~~----~~~i~~----------~~~~~~~~~~~~ 319 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQA------SGLPCILSDTITK----EVDLTD----------LVKFLSLDESPE 319 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHH------hCCCEEEEcCCch----hhhhcc----------CccEEeCCCCHH
Confidence 34467889988754321122224567776 7899999876653 121111 112233345678
Q ss_pred HHHHHHHhhh
Q 029078 188 ELICKLESKA 197 (199)
Q Consensus 188 e~~~~l~~~~ 197 (199)
++.+.|.+..
T Consensus 320 ~~a~~i~~l~ 329 (358)
T cd03812 320 IWAEEILKLK 329 (358)
T ss_pred HHHHHHHHHH
Confidence 8888877653
No 202
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.41 E-value=1.9e+02 Score=24.94 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=37.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC---------eEEEcCCCcChhHHHHHHHHh--cCCeEEEE
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI---------DLVYGGGSIGLMGLVSQAVYD--GGRHVLGV 80 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~---------~lv~GGg~~GlM~a~a~gA~~--~gg~viGv 80 (199)
+|+|+ . + . .+...+.+.++-++|.++|+ .++.| | .|-|=.+++-+.. .+-.++||
T Consensus 2 ~i~Ii-~-~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iG-G-DGT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 2 KVAII-S-N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVG-G-DGTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred EEEEE-e-C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEEC-C-cHHHHHHHHHhcccCCCCeEEEE
Confidence 58888 2 3 2 45666788999998877654 34555 4 4888777776655 46677777
No 203
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=38.37 E-value=1e+02 Score=26.40 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=22.3
Q ss_pred EEEEecCCcCcHHHHHHHHHHHHcCC-CCCcEEEEe---cCCcchHHHHHHHH
Q 029078 117 AFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLN---VDGYYNSLLSFIDK 165 (199)
Q Consensus 117 a~IvlpGG~GTl~Ei~~~~~~~~~~~-~~kPvvll~---~~g~w~~l~~~l~~ 165 (199)
|+|+|-||.||= ++. .+||.+=+. ..-+.+-..+.+..
T Consensus 2 a~viLaGG~GtR-----------Lg~~~PK~~~~i~~~~gk~~l~~~~~~i~~ 43 (266)
T cd04180 2 AVVLLAGGLGTR-----------LGKDGPKSSTDVGLPSGQCFLQLIGEKILT 43 (266)
T ss_pred EEEEECCCCccc-----------cCCCCCceeeeecCCCCCcHHHHHHHHHHH
Confidence 688999999992 232 456665333 22355555555544
No 204
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.35 E-value=84 Score=25.11 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=26.6
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
...++.|+|. |...+.... -.|..|+..+|+.|+.++
T Consensus 14 ~~~~kvI~v~-s~kgG~GKT--t~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 14 GAEIKVLLIT-SVKPGEGKS--TTSANIAVAFAQAGYKTL 50 (204)
T ss_pred cCCCcEEEEe-cCCCCCCHH--HHHHHHHHHHHhCCCeEE
Confidence 4447788888 445555544 368899999999998875
No 205
>PRK05568 flavodoxin; Provisional
Probab=37.96 E-value=50 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~ 52 (199)
++|.|+..|..++.. +.|+.+.+.+.+.|+.
T Consensus 2 ~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~ 32 (142)
T PRK05568 2 KKINIIYWSGTGNTE---AMANLIAEGAKENGAE 32 (142)
T ss_pred CeEEEEEECCCchHH---HHHHHHHHHHHHCCCe
Confidence 345555566666443 3455566655555544
No 206
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=37.81 E-value=2.8e+02 Score=24.25 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcChh-----------HHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGLM-----------GLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~GlM-----------~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~ 95 (199)
-++-.+.++++.+.....|..| ..||...|+. +.+.+=+.+.|-..+.|.-...+ . .|
T Consensus 108 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~H--G----~y 181 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAH--G----LY 181 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccc--c----Cc
Confidence 3445577888888887788777 2244433421 22333333445444444211110 0 00
Q ss_pred ceeeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 96 GEVKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 96 ~~~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
.. .+.+ ++|..-+-+..|.-+||-||+|+-+|-+.-.
T Consensus 182 k~---~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~a 219 (282)
T TIGR01858 182 KK---TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRT 219 (282)
T ss_pred CC---CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHH
Confidence 00 0112 5677777777899999999999999887543
No 207
>PRK10494 hypothetical protein; Provisional
Probab=37.34 E-value=1.3e+02 Score=25.75 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=9.3
Q ss_pred hcCEEEEecCCc
Q 029078 114 QADAFIALPGGY 125 (199)
Q Consensus 114 ~sDa~IvlpGG~ 125 (199)
.+|++|||+||.
T Consensus 78 ~~d~IVVLGgG~ 89 (259)
T PRK10494 78 KVDYIVVLGGGY 89 (259)
T ss_pred CCCEEEEcCCCc
Confidence 478888888875
No 208
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=37.25 E-value=41 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=14.4
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCeEE
Q 029078 53 LVYGGGSIGLMGLVSQAVYDGGRHVL 78 (199)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gg~vi 78 (199)
|+|||+ .|+=.+.++...+.|..||
T Consensus 9 LITGG~-sGIGl~lak~f~elgN~VI 33 (245)
T COG3967 9 LITGGA-SGIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEeCCc-chhhHHHHHHHHHhCCEEE
Confidence 355555 3666666666666665554
No 209
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=37.24 E-value=75 Score=28.46 Aligned_cols=18 Identities=0% Similarity=-0.082 Sum_probs=14.0
Q ss_pred eEEcCCHHHHHHHHHhhh
Q 029078 180 IVSAQTAHELICKLESKA 197 (199)
Q Consensus 180 i~~~~d~ee~~~~l~~~~ 197 (199)
.+-.+|++++.++|.++.
T Consensus 347 ~~~~~~~~~~~~~i~~~~ 364 (366)
T PRK14489 347 RLDINDVKQIADFVRQWL 364 (366)
T ss_pred cCCccCHHHHHHHHHHHh
Confidence 344799999999997753
No 210
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=37.22 E-value=69 Score=27.43 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 55 (199)
+|+|.+|....+.+.=...++++.+.|.+.||.++.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~ 37 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV 37 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE
Confidence 577766665555555567899999999999998743
No 211
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=37.22 E-value=1.9e+02 Score=25.83 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=37.1
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHH
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELI 190 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~ 190 (199)
++..||.+| ||.||+. .|+.. .+.|.|-+.++ .+-.+..+ +++.| +++.+.|++|++
T Consensus 245 Ll~~a~l~I---g~ggTMa--~EAA~------LGtPaIs~~~g-~~~~vd~~---L~~~G--------ll~~~~~~~ei~ 301 (335)
T PF04007_consen 245 LLYYADLVI---GGGGTMA--REAAL------LGTPAISCFPG-KLLAVDKY---LIEKG--------LLYHSTDPDEIV 301 (335)
T ss_pred HHHhcCEEE---eCCcHHH--HHHHH------hCCCEEEecCC-cchhHHHH---HHHCC--------CeEecCCHHHHH
Confidence 456677665 5556765 22222 47899875432 23333333 55555 367789999999
Q ss_pred HHHHh
Q 029078 191 CKLES 195 (199)
Q Consensus 191 ~~l~~ 195 (199)
+.+.+
T Consensus 302 ~~v~~ 306 (335)
T PF04007_consen 302 EYVRK 306 (335)
T ss_pred HHHHH
Confidence 87754
No 212
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.06 E-value=46 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=18.7
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.||+||+. |+=.++++...+.|+.++.++
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 46777764 777777777777766554443
No 213
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=37.00 E-value=75 Score=29.09 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceee-------ecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHH
Q 029078 61 GLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVK-------AVSGMHQRKAEMARQADAFIALPGGYGTLEELL 132 (199)
Q Consensus 61 GlM~a~a~gA~~~gg-~viGv~P~~~~~~e~~~~~~~~~~-------~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~ 132 (199)
|--..+.+.-.+.|- -+.||++....+.+.+..--.+.+ +.+...++..-+++.||++|..+--+|+=.++.
T Consensus 277 ~~~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~~~~~ 356 (402)
T PRK09536 277 QPAARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAARSGVI 356 (402)
T ss_pred CcHHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCCCCch
Confidence 334455555555553 467887765443332211111111 223446888899999999999887777766665
Q ss_pred HH
Q 029078 133 EV 134 (199)
Q Consensus 133 ~~ 134 (199)
..
T Consensus 357 ~~ 358 (402)
T PRK09536 357 GL 358 (402)
T ss_pred he
Confidence 43
No 214
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=36.83 E-value=3.3e+02 Score=24.80 Aligned_cols=120 Identities=16% Similarity=0.105 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeee--c-CCHHHHHHHHHH--hcCEEE-Eec
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA--V-SGMHQRKAEMAR--QADAFI-ALP 122 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~--~-~~m~~R~~~~v~--~sDa~I-vlp 122 (199)
.|..-+-+.|. |+.-+..+....+|+. |. |++ ++-- . ..+..=-+.+.+ ..|+++ .++
T Consensus 256 ~G~ig~i~nGa-Gl~m~t~D~i~~~gg~-----pa---------NPl-Dlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ 319 (392)
T PRK14046 256 DGDIGCIVNGA-GLAMATMDMIKLAGGE-----PA---------NFL-DVGGGASPERVAKAFRLVLSDRNVKAILVNIF 319 (392)
T ss_pred CCcEEEEeCCc-cHHHHHHHHHHhcCCC-----Cc---------CCE-EecCCCCHHHHHHHHHHHHcCCCCCEEEEEcC
Confidence 34333445553 8888888888888864 21 211 1110 0 111111122222 245544 456
Q ss_pred CCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCC-cchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 123 GGYGTLEELLEVITWAQLG-IHDKPVGLLNVDG-YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 123 GG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g-~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
||+.-.+++.+.+.-..-. ..+||+++- ..| -.+...+ .+.+.|. .++..+|.+|+.+...+
T Consensus 320 ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~-l~G~~~e~~~~---iL~~~Gi-------pvf~~~~~~~a~~~~v~ 383 (392)
T PRK14046 320 AGINRCDWVAEGVVQAAREVGIDVPLVVR-LAGTNVEEGRK---ILAESGL-------PIITADTLAEAAEKAVE 383 (392)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEE-cCCCCHHHHHH---HHHHcCC-------CeeecCCHHHHHHHHHH
Confidence 7777778888766543322 257899543 333 1122222 2333332 37788999999988764
No 215
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=36.79 E-value=2.9e+02 Score=24.09 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh---------hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCce
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL---------MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGE 97 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl---------M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~ 97 (199)
.++-.+.++++.+..-..|..| ..||...|. .+.+.+=+.+-|-..+.|.-...+ . .|..
T Consensus 105 ~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~H--G----~Y~~ 178 (276)
T cd00947 105 FEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSH--G----AYKG 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccc--c----ccCC
Confidence 4455577888888887788877 223333231 333444444445444444211111 0 0000
Q ss_pred eeecCCH-HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 98 VKAVSGM-HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 98 ~~~~~~m-~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
-.+.+ ++|..-+-+..+.-+||-||.|+-+|-+...
T Consensus 179 --~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 215 (276)
T cd00947 179 --GEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKA 215 (276)
T ss_pred --CCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 01112 5677777777899999999999998876543
No 216
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=36.68 E-value=3.1e+02 Score=25.28 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHH--HHHHHcCCCCcccccceE
Q 029078 104 MHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFI--DKAVDEGFIAPAARYIIV 181 (199)
Q Consensus 104 m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l--~~~~~~g~i~~~~~~~i~ 181 (199)
|..|-.-++..||.+|.+ ||+.|.=||. + .+||-+++-.. --.. ..++ +++.+-|.++.=.-+.+
T Consensus 284 f~~~~~~ll~gA~~vVSm-~GYNTvCeIL---s------~~k~aLivPr~-~p~e-EQliRA~Rl~~LGL~dvL~pe~l- 350 (400)
T COG4671 284 FRNDFESLLAGARLVVSM-GGYNTVCEIL---S------FGKPALIVPRA-APRE-EQLIRAQRLEELGLVDVLLPENL- 350 (400)
T ss_pred hhhhHHHHHHhhheeeec-ccchhhhHHH---h------CCCceEEeccC-CCcH-HHHHHHHHHHhcCcceeeCcccC-
Confidence 445556677888887776 6789977765 3 58999887322 1111 2333 35666666653222222
Q ss_pred EcCCHHHHHHHHHh
Q 029078 182 SAQTAHELICKLES 195 (199)
Q Consensus 182 ~~~d~ee~~~~l~~ 195 (199)
+++.+-++|+.
T Consensus 351 ---t~~~La~al~~ 361 (400)
T COG4671 351 ---TPQNLADALKA 361 (400)
T ss_pred ---ChHHHHHHHHh
Confidence 25555555543
No 217
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=36.58 E-value=49 Score=29.32 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=36.8
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE-ecCCcch--HHHHHHHHHHHcCCCCcc
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL-NVDGYYN--SLLSFIDKAVDEGFIAPA 175 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll-~~~g~w~--~l~~~l~~~~~~g~i~~~ 175 (199)
..++.+|.+|=|+..+. +-|++++ ++..||+ ++-..++.++.+|-|++.
T Consensus 80 ~~~~~vv~lppgy~~~~--------------k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pa 131 (299)
T COG2382 80 SERRRVVYLPPGYNPLE--------------KYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPA 131 (299)
T ss_pred cceeEEEEeCCCCCccc--------------cccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCc
Confidence 77889999998866644 4588765 6555665 567788999999988864
No 218
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=36.53 E-value=59 Score=28.15 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCe--EEEEeC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRH--VLGVIP 82 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~--viGv~P 82 (199)
.....|-++-. ++ ..++++++.|-.+|..+++.-.. +.-..+.+.|.+.|.. +||+--
T Consensus 162 ~v~~~~~gs~~--D~---~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 162 KVNVSYTGSFN--DP---AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp EEEEEE-SSSS---H---HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEES
T ss_pred eEEEEEcCCcC--ch---HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEecc
Confidence 34445545432 44 46788889888899999998332 5566677778888877 999843
No 219
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=36.46 E-value=1.2e+02 Score=24.61 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=23.9
Q ss_pred HHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 111 MARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 111 ~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
++..||++|.-. .|+|+ =+.|++. .++|++..+..+
T Consensus 260 ~~~~~d~~i~ps~~e~~~~--~~~Ea~~------~G~PvI~~~~~~ 297 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPN--VLLEAMA------LGTPVVATDCPG 297 (353)
T ss_pred HHHhCCEEEeCcccCCCCc--HHHHHHH------hCCCEEEcCCCC
Confidence 577899887543 34444 3556665 689999876653
No 220
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=36.45 E-value=78 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=18.1
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCC
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALPGG 124 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~IvlpGG 124 (199)
+-++-+++..-+---.-.+|.+|+|..-
T Consensus 208 eAVIDKDlasalLA~~i~AD~liILTdV 235 (312)
T COG0549 208 EAVIDKDLASALLAEQIDADLLIILTDV 235 (312)
T ss_pred eEEEccHHHHHHHHHHhcCCEEEEEecc
Confidence 5567777753333333469999999864
No 221
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=36.34 E-value=2e+02 Score=22.12 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.-+...|..+||.++|-|-. =-.+.+.+.|.+.+-..|++.
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc
Confidence 34455666799999999853 336888999999999999993
No 222
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=35.92 E-value=1.6e+02 Score=25.35 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=26.7
Q ss_pred HHHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 107 RKAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 107 R~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
....++..||+++..+ -|+|.. +.|++. .++||+..+.+|
T Consensus 292 ~~~~~l~~ad~~l~~s~~E~~g~~--~lEAma------~G~PvI~s~~~~ 333 (392)
T cd03805 292 QKELLLSSARALLYTPSNEHFGIV--PLEAMY------AGKPVIACNSGG 333 (392)
T ss_pred HHHHHHhhCeEEEECCCcCCCCch--HHHHHH------cCCCEEEECCCC
Confidence 3345678899988644 334442 456666 789999987654
No 223
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=35.90 E-value=1.2e+02 Score=27.23 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=28.3
Q ss_pred CCc-EEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 144 DKP-VGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 144 ~kP-vvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
.+| +++++..-|...+...+..+...-..+ ...+++.-++++++++..+
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~~---~~~V~ld~ple~~l~RN~~ 174 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSLG---FCQLFLDCPVESCLLRNKQ 174 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCCC---EEEEEEeCCHHHHHHHHhc
Confidence 577 456666655566666666554432111 2446666777777777653
No 224
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=35.84 E-value=47 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 029078 156 YNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLESK 196 (199)
Q Consensus 156 w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (199)
|+.+..+|+.|.+.|+|.. ....+.+++--.++++.+.++
T Consensus 33 ~~~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l~~~ 72 (77)
T PF14947_consen 33 YSTLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEELEEL 72 (77)
T ss_dssp HHHHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHHHHH
Confidence 5778888999999999944 667789999999999988765
No 225
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=35.83 E-value=49 Score=28.30 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
+|+|+||......+.=...++.+-+.|.+.||.++.-.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~ 38 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVD 38 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEe
Confidence 36666666555443224688999999999999985544
No 226
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=35.82 E-value=3.2e+02 Score=24.37 Aligned_cols=94 Identities=12% Similarity=-0.031 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHH--hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHH---HHHHcCCCCcc
Q 029078 101 VSGMHQRKAEMAR--QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID---KAVDEGFIAPA 175 (199)
Q Consensus 101 ~~~m~~R~~~~v~--~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~---~~~~~g~i~~~ 175 (199)
..++.+=.++|.+ ..++++...-+.|+.+|-...|-.. ...+|||+.+-. |-+.+.-..+- .+++.+.=+.+
T Consensus 209 g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~--~~~~KPVVa~~a-Grsap~G~r~gHaGAi~~~~~G~~~ 285 (317)
T PTZ00187 209 GTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN--NPIKKPVVSFIA-GITAPPGRRMGHAGAIISGGKGTAP 285 (317)
T ss_pred CCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh--hcCCCcEEEEEe-cCCCCCCCcccchhhhhccCCCCHH
Confidence 3455555666654 4667777777778886555433222 224799999844 34432111111 11111100111
Q ss_pred ------cccceEEcCCHHHHHHHHHhhh
Q 029078 176 ------ARYIIVSAQTAHELICKLESKA 197 (199)
Q Consensus 176 ------~~~~i~~~~d~ee~~~~l~~~~ 197 (199)
...-+.+++|++|+.+.+++..
T Consensus 286 ~k~aal~qaGv~v~~~~~el~~~~~~~~ 313 (317)
T PTZ00187 286 GKIEALEAAGVRVVKSPAQLGKTMLEVM 313 (317)
T ss_pred HHHHHHHHCCCeEeCCHHHHHHHHHHHH
Confidence 1123788999999999998754
No 227
>PRK00861 putative lipid kinase; Reviewed
Probab=35.71 E-value=96 Score=26.62 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=21.6
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.| .|+.-||=||++|+...+. ....|+.++
T Consensus 58 ~d-~vv~~GGDGTl~evv~~l~-----~~~~~lgvi 87 (300)
T PRK00861 58 AE-LIIASGGDGTLSAVAGALI-----GTDIPLGII 87 (300)
T ss_pred CC-EEEEECChHHHHHHHHHHh-----cCCCcEEEE
Confidence 35 4567899999999987663 134677776
No 228
>PRK13059 putative lipid kinase; Reviewed
Probab=35.71 E-value=75 Score=27.38 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHhCCC-eEEEcCCCcChhHHHHHHHHhcC-CeEEEEeCC
Q 029078 44 KQLVERNI-DLVYGGGSIGLMGLVSQAVYDGG-RHVLGVIPK 83 (199)
Q Consensus 44 ~~lA~~G~-~lv~GGg~~GlM~a~a~gA~~~g-g~viGv~P~ 83 (199)
+..++.++ .|+..|| .|.-..++.+..+.+ ...+||+|.
T Consensus 50 ~~~~~~~~d~vi~~GG-DGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 50 FKDIDESYKYILIAGG-DGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HHHhhcCCCEEEEECC-ccHHHHHHHHHHhcCCCCcEEEECC
Confidence 33344554 4445556 599999999988764 466999994
No 229
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=35.65 E-value=3.3e+02 Score=24.49 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred HhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEEeC-CCCCCCCC
Q 029078 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIP-KTLMPREI 90 (199)
Q Consensus 13 ~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~a~gA~~~gg~viGv~P-~~~~~~e~ 90 (199)
......-++=|.+-.+....+. ....+-++.|.+.|+.+ +|-.- =+ ..++...+.|- +.|.| .....
T Consensus 162 ~~~~~~iKlEvi~e~~~llpd~--~~~v~aa~~L~~~Gf~v~~yc~~--d~--~~a~~l~~~g~--~avmPl~~pIG--- 230 (326)
T PRK11840 162 AGGWDLVKLEVLGDAKTLYPDM--VETLKATEILVKEGFQVMVYCSD--DP--IAAKRLEDAGA--VAVMPLGAPIG--- 230 (326)
T ss_pred hcCCCeEEEEEcCCCCCcccCH--HHHHHHHHHHHHCCCEEEEEeCC--CH--HHHHHHHhcCC--EEEeecccccc---
Confidence 3344445777886555443322 34566778888999999 66653 23 33444444544 67777 33221
Q ss_pred CCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 029078 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (199)
Q Consensus 91 ~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~ 136 (199)
....+. =.+.-+.+++..+.-|++.+|+||-+....++.
T Consensus 231 sg~gv~-------~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 231 SGLGIQ-------NPYTIRLIVEGATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred CCCCCC-------CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 011111 134455666778999999999999999998886
No 230
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=35.57 E-value=3.1e+02 Score=25.41 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhC---------CCeEEEcCCCcC---hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHH
Q 029078 38 AAIQLGKQLVER---------NIDLVYGGGSIG---LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMH 105 (199)
Q Consensus 38 ~A~~lG~~lA~~---------G~~lv~GGg~~G---lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~ 105 (199)
.|+..++.+|++ +..++||+-..| |+.|++..+.+.|..++-+....+. +.+.+.+....+
T Consensus 121 ~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~------~~~~~~l~~~~~- 193 (445)
T PRK12422 121 LPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT------EHLVSAIRSGEM- 193 (445)
T ss_pred HHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH------HHHHHHHhcchH-
Confidence 455556666541 235788764333 5888888888777776655322111 000000111111
Q ss_pred HHHHHHHHhcCEEEE-----ecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 106 QRKAEMARQADAFIA-----LPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 106 ~R~~~~v~~sDa~Iv-----lpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
++-....+..|++++ +.|.-.|.+|++..+..... .++++++.
T Consensus 194 ~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlt 241 (445)
T PRK12422 194 QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVIS 241 (445)
T ss_pred HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEe
Confidence 122222456676554 44555678888877653332 35777764
No 231
>PRK06703 flavodoxin; Provisional
Probab=35.24 E-value=97 Score=23.61 Aligned_cols=14 Identities=7% Similarity=0.306 Sum_probs=7.3
Q ss_pred HHHHHHhcCCeEEE
Q 029078 66 VSQAVYDGGRHVLG 79 (199)
Q Consensus 66 ~a~gA~~~gg~viG 79 (199)
..+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 44444456666555
No 232
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.23 E-value=2.1e+02 Score=24.86 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 107 RKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 107 R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
+...++..+|++|. +.| +. +.|++. .++|++..
T Consensus 267 ~~~~~l~~ad~vv~-~Sg--~~--~~EA~a------~g~PvI~~ 299 (365)
T TIGR00236 267 DFLNLAANSHLILT-DSG--GV--QEEAPS------LGKPVLVL 299 (365)
T ss_pred HHHHHHHhCCEEEE-CCh--hH--HHHHHH------cCCCEEEC
Confidence 44456778887764 433 22 344554 68999986
No 233
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.83 E-value=3.1e+02 Score=23.95 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHH
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~ 135 (199)
++|..-+-+..|.-+||-||.|+-+|-+.-.
T Consensus 191 ~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 221 (284)
T PRK12857 191 FDRLAKIKELVNIPIVLHGSSGVPDEAIRKA 221 (284)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 5677777777788999999999999887543
No 234
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=34.81 E-value=66 Score=27.07 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCEEEEec-CCcCcHHHHH-HHHHHHHcC------CCCCcEEEEecC
Q 029078 106 QRKAEMARQADAFIALP-GGYGTLEELL-EVITWAQLG------IHDKPVGLLNVD 153 (199)
Q Consensus 106 ~R~~~~v~~sDa~Ivlp-GG~GTl~Ei~-~~~~~~~~~------~~~kPvvll~~~ 153 (199)
.+-...++.+|+||+.. .=-|++.-.+ .++.|.... ..+||+.++...
T Consensus 82 ~~l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 82 RELRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred HHHHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC
Confidence 34455678899877664 2223333333 344555432 357999988655
No 235
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=34.74 E-value=3.4e+02 Score=24.31 Aligned_cols=131 Identities=19% Similarity=0.298 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhH---HHHHHHHhcCCeE-EEEeCCC-------CCCCC-C--CCCCCc
Q 029078 31 KSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMG---LVSQAVYDGGRHV-LGVIPKT-------LMPRE-I--TGDTVG 96 (199)
Q Consensus 31 ~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~---a~a~gA~~~gg~v-iGv~P~~-------~~~~e-~--~~~~~~ 96 (199)
|++.. +.-.+.+-..|+.|..+| .|.+.|. .+-|.+++..|.+ ++|+.-. +-|.. . ..+.+.
T Consensus 132 ND~Tl-~~L~k~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~g 207 (314)
T cd00384 132 NDATL-ELLAKIAVSHAEAGADIV---APSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFG 207 (314)
T ss_pred cHHHH-HHHHHHHHHHHHcCCCee---ecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCC
Confidence 34443 344456677889999999 4678885 4567788877764 7775421 11110 0 001111
Q ss_pred e-----eeecCCH-HHHHHH--HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHH
Q 029078 97 E-----VKAVSGM-HQRKAE--MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVD 168 (199)
Q Consensus 97 ~-----~~~~~~m-~~R~~~--~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~ 168 (199)
+ +-....- .-|... +-+-+|.+.|=||.. -||=+..+-. ..+.|+..++++|=|. +++....
T Consensus 208 DRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~-YLDIi~~~k~-----~~~~PvaaYqVSGEYa----MikaAa~ 277 (314)
T cd00384 208 DRKTYQMDPANRREALREVELDIEEGADILMVKPALA-YLDIIRDVRE-----RFDLPVAAYNVSGEYA----MIKAAAK 277 (314)
T ss_pred CccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHHH-----hcCCCEEEEEccHHHH----HHHHHHH
Confidence 1 1111111 122222 245599999999973 2222221111 2478999999988544 3444667
Q ss_pred cCCCCcc
Q 029078 169 EGFIAPA 175 (199)
Q Consensus 169 ~g~i~~~ 175 (199)
.|.++.+
T Consensus 278 ~G~id~~ 284 (314)
T cd00384 278 NGWIDEE 284 (314)
T ss_pred cCCccHH
Confidence 7777654
No 236
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=34.73 E-value=3.1e+02 Score=23.85 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEE-----EcCCCc-----Ch----hHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCc
Q 029078 31 KSPSYQLAAIQLGKQLVERNIDLV-----YGGGSI-----GL----MGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVG 96 (199)
Q Consensus 31 ~~~~~~~~A~~lG~~lA~~G~~lv-----~GGg~~-----Gl----M~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~ 96 (199)
..++..+.++++-+...+.|..|= -||... |. .+.+.+.+.+.|-..+++.....++.....+.+
T Consensus 109 ~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l- 187 (281)
T PRK06806 109 PLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNL- 187 (281)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCcc-
Confidence 356777889998888888877652 232211 11 233333333457788888433332211011111
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEecCCcC-cHHHHHHHH
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALPGGYG-TLEELLEVI 135 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~IvlpGG~G-Tl~Ei~~~~ 135 (199)
+ .+|...+.+..+.-+|+-||.| |.+++..+.
T Consensus 188 ------~-~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i 220 (281)
T PRK06806 188 ------R-FDRLQEINDVVHIPLVLHGGSGISPEDFKKCI 220 (281)
T ss_pred ------C-HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 1 4667777777889999999999 555555544
No 237
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=34.23 E-value=48 Score=30.61 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCC----------cChhHHHHHHHHhcCCeE
Q 029078 36 QLAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHV 77 (199)
Q Consensus 36 ~~~A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~a~gA~~~gg~v 77 (199)
.+-|+.|+++|.++|+.||+||-. .|+-+..+..+++.-+.+
T Consensus 290 v~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It 341 (413)
T COG0112 290 VKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGIT 341 (413)
T ss_pred HHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEe
Confidence 355777888888999999997632 266677788788764443
No 238
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=34.14 E-value=1.3e+02 Score=25.94 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEE
Q 029078 32 SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viG 79 (199)
.-.|.+.|-.+..-+|.+|=.+++=|-+.|-++.+-+.|.+++|.++-
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~ 137 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHN 137 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceee
Confidence 358899999999999986555544444569999999999999986543
No 239
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=34.14 E-value=46 Score=29.63 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred CcchHHHHHHHHHHHcCCCCcccccc---eEEcCCHHHHHHHHHh
Q 029078 154 GYYNSLLSFIDKAVDEGFIAPAARYI---IVSAQTAHELICKLES 195 (199)
Q Consensus 154 g~w~~l~~~l~~~~~~g~i~~~~~~~---i~~~~d~ee~~~~l~~ 195 (199)
.+|+-+...+..|+.+|.|+.+..+. -.+..+++|+.+.|++
T Consensus 198 ~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~ 242 (334)
T PF03492_consen 198 MLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEE 242 (334)
T ss_dssp CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhc
Confidence 47899999999999999999997754 5788999999888764
No 240
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=33.86 E-value=67 Score=27.90 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
-++..||++++|+-..=+++-.-.+.. ....++||.++|++.
T Consensus 242 ~~v~e~dg~LvlGsSL~v~Sg~r~i~~---a~~~k~pi~IvNIGp 283 (305)
T KOG2683|consen 242 EKVKECDGFLVLGSSLMVLSGFRFIRH---AHEKKKPIAIVNIGP 283 (305)
T ss_pred HHHhccCceEEechhHHHHHHHHHHHH---HHhhcCcEEEEecCC
Confidence 457889999999777655555443322 112478999999863
No 241
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=33.83 E-value=54 Score=26.26 Aligned_cols=41 Identities=32% Similarity=0.390 Sum_probs=22.3
Q ss_pred HhcCEEEEecCC-----cCcHHHHHHHHHHHHc-CCCCCcEEEEecC
Q 029078 113 RQADAFIALPGG-----YGTLEELLEVITWAQL-GIHDKPVGLLNVD 153 (199)
Q Consensus 113 ~~sDa~IvlpGG-----~GTl~Ei~~~~~~~~~-~~~~kPvvll~~~ 153 (199)
..+|.+|+.+|| ..+.......+.+... ...++|+++++.+
T Consensus 62 ~~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 62 KNADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred ccCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECce
Confidence 567888888885 2222222111222222 2468999998664
No 242
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=33.71 E-value=3.6e+02 Score=24.32 Aligned_cols=32 Identities=41% Similarity=0.390 Sum_probs=22.3
Q ss_pred HHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 109 AEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
...+..||++|.-.| .-| .|+. . .++|+|++.
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---~------lg~P~Ilip 322 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---G------LGKPVIQLP 322 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---H------hCCCEEEEe
Confidence 356788999988866 344 4443 2 589999986
No 243
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=33.65 E-value=2.8e+02 Score=23.12 Aligned_cols=89 Identities=24% Similarity=0.264 Sum_probs=52.3
Q ss_pred HHHHHHHh-CCCeEEEcCCCcChhHHHHHHHHhc-CCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEE
Q 029078 41 QLGKQLVE-RNIDLVYGGGSIGLMGLVSQAVYDG-GRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAF 118 (199)
Q Consensus 41 ~lG~~lA~-~G~~lv~GGg~~GlM~a~a~gA~~~-gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~ 118 (199)
+.-+.|++ +|..+|+|-|+.|+++-.-..=+.+ |-.+.-|-|.+. .+-. --|+...|.+
T Consensus 30 ~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea-----~hgd--------------lg~i~~~Dvv 90 (202)
T COG0794 30 RAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEA-----LHGD--------------LGMITPGDVV 90 (202)
T ss_pred HHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchh-----ccCC--------------ccCCCCCCEE
Confidence 34445555 7999999999999986554433333 444444434322 1111 1146778888
Q ss_pred EEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 119 IALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 119 IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
|++.|+ |-=.|+..+....+ ..+.|++.+.
T Consensus 91 iaiS~S-GeT~el~~~~~~aK--~~g~~liaiT 120 (202)
T COG0794 91 IAISGS-GETKELLNLAPKAK--RLGAKLIAIT 120 (202)
T ss_pred EEEeCC-CcHHHHHHHHHHHH--HcCCcEEEEe
Confidence 888876 44467776654322 2456777663
No 244
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=33.46 E-value=2.4e+02 Score=22.29 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHhcC---EEEEecCCcCcHHHHHHHHHHHHcC-C---CCCcEEEE
Q 029078 101 VSGMHQRKAEMARQAD---AFIALPGGYGTLEELLEVITWAQLG-I---HDKPVGLL 150 (199)
Q Consensus 101 ~~~m~~R~~~~v~~sD---a~IvlpGG~GTl~Ei~~~~~~~~~~-~---~~kPvvll 150 (199)
.+.+.+|-..+.+.-+ .+|-+-+|+|.-++....+.-.... . ..+|+|..
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~ 114 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVAR 114 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEE
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEE
Confidence 3344444444443333 4666779999999998766433222 2 46788865
No 245
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=33.28 E-value=1.5e+02 Score=21.96 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCCcEEEEecCCcchHHHHHHHH-HHHcCCCCcccccceEEcCCHHHHHHHHHh
Q 029078 143 HDKPVGLLNVDGYYNSLLSFIDK-AVDEGFIAPAARYIIVSAQTAHELICKLES 195 (199)
Q Consensus 143 ~~kPvvll~~~g~w~~l~~~l~~-~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~ 195 (199)
+-+|++.++.+|.-+.++..+++ +.+++.|.-..... .-+|..++.+.|++
T Consensus 16 ~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~--~~edr~eia~~l~~ 67 (97)
T COG1534 16 HLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQN--AREDKKEIAEALAE 67 (97)
T ss_pred cCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeecc--chhhHHHHHHHHHH
Confidence 56899999999999999999875 66666766432211 12355566666654
No 246
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=33.21 E-value=3.3e+02 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEV 134 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~ 134 (199)
++|..-+-+..|.-+||-||.|+-+|-+.-
T Consensus 195 ~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ 224 (288)
T TIGR00167 195 FERLEEIQKYVNLPLVLHGGSGIPDEEIKK 224 (288)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 567777777889999999999999877643
No 247
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=33.16 E-value=1.2e+02 Score=25.46 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
..++++++.+-.+|..+|+..+ .| ..+.+.|.+.|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~-~~--~g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHT-DS--PGVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecC-CC--hHHHHHHHHhCCEEEeec
Confidence 3456777777778999998875 23 245566778899999983
No 248
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.05 E-value=2.5e+02 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=18.7
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
.+.++. || .|.+-.+++.....+-.++||
T Consensus 59 d~vi~~-GG-DGT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 59 DLAIVL-GG-DGTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred CEEEEE-CC-cHHHHHHHHHhccCCCCEEEE
Confidence 444444 45 599888888876655555555
No 249
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.91 E-value=2.3e+02 Score=21.81 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 40 IQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.-++..|-.+||.+++-|-. =-.+...+.|.+.+..+||+.
T Consensus 17 niv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred HHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 34556677799999999853 567999999999999999993
No 250
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=32.87 E-value=2.1e+02 Score=23.52 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCEEEEecC--CcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 106 QRKAEMARQADAFIALPG--GYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpG--G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
+....++..||++|.... +.|+ =+.|++. .++||+..+..+
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~------~g~PvI~~~~~~ 312 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMA------AGLPVVAVDAPG 312 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHH------cCCcEEEeCCCC
Confidence 445566788999775432 2232 2556665 689999876543
No 251
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=32.82 E-value=1.2e+02 Score=26.53 Aligned_cols=50 Identities=22% Similarity=0.141 Sum_probs=30.5
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC-----CcchHHHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD-----GYYNSLLSFID 164 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~-----g~w~~l~~~l~ 164 (199)
+..|+||++.| .-||+|....+.+.-- ..+||||+-+.- --.|...++.+
T Consensus 71 ~~~~GvVVtHG-TDTme~tA~~Ls~~l~-~l~kPVVlTGa~~P~~~~~sDg~~NL~~ 125 (313)
T PF00710_consen 71 DDYDGVVVTHG-TDTMEETAFFLSLLLD-NLDKPVVLTGAMRPLSAPGSDGPRNLYD 125 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHHEE-S-SSEEEEE--SS-TTSTT-SHHHHHHH
T ss_pred HhcCeEEEecC-chHHHHHHHHHHHHhc-CCCCCEEEeCCcCCCcCCCCccHHHHHH
Confidence 45889888875 7999999987765432 237999987431 12345555544
No 252
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=32.81 E-value=1.2e+02 Score=28.06 Aligned_cols=71 Identities=21% Similarity=0.203 Sum_probs=38.7
Q ss_pred CCeE-EEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcH
Q 029078 50 NIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL 128 (199)
Q Consensus 50 G~~l-v~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl 128 (199)
|-++ |.|.|+.|.. +++.++..|.+|+.+-.+.....+.....+ ...++. . .++.+|.+|...|..+.+
T Consensus 195 Gk~VvViG~G~IG~~--vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~----~v~~le---e-al~~aDVVItaTG~~~vI 264 (406)
T TIGR00936 195 GKTVVVAGYGWCGKG--IAMRARGMGARVIVTEVDPIRALEAAMDGF----RVMTME---E-AAKIGDIFITATGNKDVI 264 (406)
T ss_pred cCEEEEECCCHHHHH--HHHHHhhCcCEEEEEeCChhhHHHHHhcCC----EeCCHH---H-HHhcCCEEEECCCCHHHH
Confidence 4444 6677765543 555666778888887322211111111111 112332 2 357899999999887777
Q ss_pred HH
Q 029078 129 EE 130 (199)
Q Consensus 129 ~E 130 (199)
++
T Consensus 265 ~~ 266 (406)
T TIGR00936 265 RG 266 (406)
T ss_pred HH
Confidence 64
No 253
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.79 E-value=2.5e+02 Score=24.21 Aligned_cols=40 Identities=30% Similarity=0.649 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEG 170 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~-----~l~~~~~~g 170 (199)
|++.+++.+.-.. ..++.|++++. ||+++.. |++.+.+.|
T Consensus 75 ~~~~~~~~~~~~r-~~~~~p~vlm~---Y~N~i~~~G~e~F~~~~~~aG 119 (263)
T CHL00200 75 NLNKILSILSEVN-GEIKAPIVIFT---YYNPVLHYGINKFIKKISQAG 119 (263)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhCHHHHHHHHHHcC
Confidence 4666666554333 23567988773 8886555 566666655
No 254
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=32.66 E-value=1.3e+02 Score=25.93 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=26.1
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
...++..||++|.-. .++|.. +.|++. .++||+..+.+|
T Consensus 274 ~~~~~~~aDv~v~ps~~e~~g~~--~lEA~a------~G~PvI~s~~~~ 314 (388)
T TIGR02149 274 LVELLSNAEVFVCPSIYEPLGIV--NLEAMA------CGTPVVASATGG 314 (388)
T ss_pred HHHHHHhCCEEEeCCccCCCChH--HHHHHH------cCCCEEEeCCCC
Confidence 344568899887642 455543 456666 789999987654
No 255
>PRK06443 chorismate mutase; Validated
Probab=32.57 E-value=81 Score=25.85 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEE
Q 029078 34 SYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (199)
Q Consensus 34 ~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viG 79 (199)
.|...|+.||..+.+.|+.|+-- -.....-.|+..+||+++-
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i~----~~~~~~~~~~~~~~~~~~~ 132 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYIE----DNPDSIEEGCSKAGGHVVI 132 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEec----cCchHHHHhhhhcCCeEec
Confidence 47789999999999999998732 3678888888899998653
No 256
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=32.51 E-value=3.8e+02 Score=24.25 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcCh-------------hHHHHHHHHhcC----CeEEEEeCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIGL-------------MGLVSQAVYDGG----RHVLGVIPKTLMPRE 89 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~Gl-------------M~a~a~gA~~~g----g~viGv~P~~~~~~e 89 (199)
-++-.+.++++-+.....|..| ..||...|+ .+.+.+=+.+-| -..+.+.-...
T Consensus 134 ~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~---- 209 (340)
T cd00453 134 LQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNV---- 209 (340)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCcc----
Confidence 3445578888888888888887 445554452 233333333444 22222211111
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHhc---------CEEEEecCCcCcHHHHHHHH
Q 029078 90 ITGDTVGEVKAVSGMHQRKAEMARQA---------DAFIALPGGYGTLEELLEVI 135 (199)
Q Consensus 90 ~~~~~~~~~~~~~~m~~R~~~~v~~s---------Da~IvlpGG~GTl~Ei~~~~ 135 (199)
|-.|..-...-+ ++|...+-+.. +..+||-||.|+-+|-+.-.
T Consensus 210 --HG~Yk~g~p~L~-~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~a 261 (340)
T cd00453 210 --HGVYKKGNVVLT-PTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDS 261 (340)
T ss_pred --ccCCCCCCCccC-HHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHH
Confidence 000100000111 34444444444 78899999999999887644
No 257
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=32.48 E-value=59 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=16.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHH
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQ 41 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~ 41 (199)
|++|||||||=.+..--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 457999999987665555555544
No 258
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=32.41 E-value=3e+02 Score=22.95 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=27.5
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w 156 (199)
+...+.|+|+|| .|...+++.+.-. ...-..+.++..+.+|
T Consensus 26 ~~~~~~lalsGG-stp~~~y~~L~~~--~i~w~~v~~f~~DER~ 66 (233)
T TIGR01198 26 ERGQFSLALSGG-RSPIALLEALAAQ--PLDWSRIHLFLGDERY 66 (233)
T ss_pred hcCcEEEEECCC-ccHHHHHHHHhhC--CCCcceEEEEEecccc
Confidence 456789999999 5777888877632 2222456666666666
No 259
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=32.26 E-value=1.2e+02 Score=25.51 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=51.2
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHH-----cCC-CCCcEEEEec--CCcch--HHHHHHHHHHHcCC--CCccccc
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQ-----LGI-HDKPVGLLNV--DGYYN--SLLSFIDKAVDEGF--IAPAARY 178 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~-----~~~-~~kPvvll~~--~g~w~--~l~~~l~~~~~~g~--i~~~~~~ 178 (199)
+.+.+|++|+.|=..+|+.-+..=++-.. +.. .++|+++.-. ..+|+ ....-++.+.+.|+ +.+....
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~g~ 172 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKR 172 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCcCc
Confidence 44569999999999999988763221111 111 3689988621 24786 23444666666663 3333221
Q ss_pred c------eEEcCCHHHHHHHHHhhh
Q 029078 179 I------IVSAQTAHELICKLESKA 197 (199)
Q Consensus 179 ~------i~~~~d~ee~~~~l~~~~ 197 (199)
+ .---.+|++++..+.++.
T Consensus 173 lAcg~~G~Grm~ep~~I~~~i~~~l 197 (209)
T PLN02496 173 LACGDYGNGAMAEPSLIYSTVRLFL 197 (209)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 1 111246888888877653
No 260
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.15 E-value=70 Score=28.79 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=21.0
Q ss_pred HHhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 12 AALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 12 ~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
.+....+++|+|+||.. .....+++.|.++|+.|.
T Consensus 92 ~~~~~~~~~I~IiGG~G--------lmG~slA~~l~~~G~~V~ 126 (374)
T PRK11199 92 KTLNPDLRPVVIVGGKG--------QLGRLFAKMLTLSGYQVR 126 (374)
T ss_pred cccCcccceEEEEcCCC--------hhhHHHHHHHHHCCCeEE
Confidence 33333556788886443 234567777777777754
No 261
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=32.08 E-value=2.9e+02 Score=22.73 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCEEEEecC-----CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccce
Q 029078 106 QRKAEMARQADAFIALPG-----GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYII 180 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpG-----G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i 180 (199)
+...-++..||++|.... |.+.-.=+.|++. .++|++..+..+..+.+. ++ ....+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~------~G~pvi~~~~~~~~~~~~--------~~-----~~g~~ 346 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMA------AGKPVLASVDGESAELVE--------EA-----GAGLV 346 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHH------CCCcEEEecCCCchhhhc--------cC-----CcceE
Confidence 344556788999886543 2233334566666 789999987654322211 11 11223
Q ss_pred EEcCCHHHHHHHHHhh
Q 029078 181 VSAQTAHELICKLESK 196 (199)
Q Consensus 181 ~~~~d~ee~~~~l~~~ 196 (199)
+-.+|++++.+.|.+.
T Consensus 347 ~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 347 VPPGDPEALAAAILEL 362 (394)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 3345788887777654
No 262
>PRK13057 putative lipid kinase; Reviewed
Probab=32.03 E-value=1.1e+02 Score=26.04 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=22.5
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
..| .|+.-||=||++|+...+. ..+.|+.++
T Consensus 50 ~~d-~iiv~GGDGTv~~v~~~l~-----~~~~~lgii 80 (287)
T PRK13057 50 GVD-LVIVGGGDGTLNAAAPALV-----ETGLPLGIL 80 (287)
T ss_pred CCC-EEEEECchHHHHHHHHHHh-----cCCCcEEEE
Confidence 345 5667899999999987663 135688777
No 263
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=31.91 E-value=1.5e+02 Score=25.08 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=25.0
Q ss_pred HHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 109 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 109 ~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
.-++..||++|.-. .|+|. =+.|++. .++|+|..+..+
T Consensus 265 ~~~~~~~d~~v~ps~~E~~~~--~~~EAma------~g~PvI~s~~~~ 304 (371)
T cd04962 265 EELLSIADLFLLPSEKESFGL--AALEAMA------CGVPVVASNAGG 304 (371)
T ss_pred HHHHHhcCEEEeCCCcCCCcc--HHHHHHH------cCCCEEEeCCCC
Confidence 34568899987543 34453 2556665 689999977654
No 264
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.73 E-value=1e+02 Score=26.93 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=62.4
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~ 95 (199)
..|++|+|+.- .. .+...+.++++.++|.++|+.+..--.. +...++. . ..
T Consensus 2 ~~~~~v~iv~~--~~-k~~a~e~~~~i~~~L~~~giev~v~~~~----------~~~~~~~--------~------~~-- 52 (295)
T PRK01231 2 PSFRNIGLIGR--LG-SSSVVETLRRLKDFLLDRGLEVILDEET----------AEVLPGH--------G------LQ-- 52 (295)
T ss_pred CCCCEEEEEec--CC-CHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhcCcc--------c------cc--
Confidence 34678999942 22 4566678899999999999887643111 0000100 0 00
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccch-----HHHHHHHHHHH
Q 029078 96 GEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYN-----SLLSFIDKAVD 168 (199)
Q Consensus 96 ~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w~-----~l~~~l~~~~~ 168 (199)
...+. .+.+..|. |+.-||=||+.+.+..+. ..++||+-+|.+ ||.. .+.+.++++.+
T Consensus 53 --------~~~~~-~~~~~~d~-vi~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 53 --------TVSRK-LLGEVCDL-VIVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred --------ccchh-hcccCCCE-EEEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHc
Confidence 00011 11123554 455688899998875442 356898877765 5543 45555666655
Q ss_pred cCC
Q 029078 169 EGF 171 (199)
Q Consensus 169 ~g~ 171 (199)
..|
T Consensus 118 g~~ 120 (295)
T PRK01231 118 GHY 120 (295)
T ss_pred CCc
Confidence 443
No 265
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=31.45 E-value=2.1e+02 Score=25.17 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHhcCEEEEe---cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCH
Q 029078 110 EMARQADAFIAL---PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTA 186 (199)
Q Consensus 110 ~~v~~sDa~Ivl---pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ 186 (199)
..+..||++|+- ..|++ .=+.|++. .++|||..+.. . ..+ .. ....-+.+.+|+
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~--~~~lEAma------~G~PVV~t~~~-~-~~i------------~~-~~~~g~lv~~~~ 349 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQ--NKVLEAMA------MAKPVVASPEA-A-EGI------------DA-LPGAELLVAADP 349 (397)
T ss_pred HHHHhCCEEEecccccCCcc--cHHHHHHH------cCCCEEecCcc-c-ccc------------cc-cCCcceEeCCCH
Confidence 356889998752 23444 35667776 78999986532 1 111 11 111224445889
Q ss_pred HHHHHHHHhhh
Q 029078 187 HELICKLESKA 197 (199)
Q Consensus 187 ee~~~~l~~~~ 197 (199)
+++.+.|.+..
T Consensus 350 ~~la~ai~~ll 360 (397)
T TIGR03087 350 ADFAAAILALL 360 (397)
T ss_pred HHHHHHHHHHH
Confidence 98888877543
No 266
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.28 E-value=2.7e+02 Score=22.31 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=23.6
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++++++.|.|+++ .....+.+.|+++|+.|+.-+
T Consensus 4 ~~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 4 NSMPRALITGASS--------GIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEe
Confidence 3466888887654 245677788888898876544
No 267
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.27 E-value=51 Score=27.97 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=35.7
Q ss_pred eeeecCCHHHHHHHHHHhcCEEEEec---CCcCcHHHHHHHHHHH--HcCC--CCCcEEE
Q 029078 97 EVKAVSGMHQRKAEMARQADAFIALP---GGYGTLEELLEVITWA--QLGI--HDKPVGL 149 (199)
Q Consensus 97 ~~~~~~~m~~R~~~~v~~sDa~Ivlp---GG~GTl~Ei~~~~~~~--~~~~--~~kPvvl 149 (199)
-++.+++-.+|..++++.||.||.+- |-.||-+-+-+.+... +... ..+|+.+
T Consensus 153 pLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 153 PLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred EeeCCCChHHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 34566777999999999999998886 6667665555444321 1222 3688865
No 268
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=31.22 E-value=1.6e+02 Score=22.78 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHh----CCCe-EEEcCC---CcChhHHHHHHHHhcC
Q 029078 36 QLAAIQLGKQLVE----RNID-LVYGGG---SIGLMGLVSQAVYDGG 74 (199)
Q Consensus 36 ~~~A~~lG~~lA~----~G~~-lv~GGg---~~GlM~a~a~gA~~~g 74 (199)
.+.|+.+|+.+|+ .|+. +|+|=+ +.|---|+++||.|+|
T Consensus 76 ~~aA~~vG~lia~ra~~kgi~~vVfdr~g~~yhgRV~Ala~~AreaG 122 (125)
T COG0256 76 TEAAYLVGKLIAERALAKGIEEVVFDRGGYKYHGRVAALADGAREAG 122 (125)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCcchHHHHHHHHHHHcC
Confidence 4677888888876 5664 344422 2578899999999987
No 269
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=31.08 E-value=99 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCCCC-HHHHHHHHHHHHHHHhCCCeE
Q 029078 18 FKRVCVFCGSSPGKS-PSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~-~~~~~~A~~lG~~lA~~G~~l 53 (199)
|++|+|+|.-..+.. -=+...+++|+..++++|+.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 678999964434321 245788999999999998875
No 270
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=31.00 E-value=60 Score=30.04 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCeEEEcCC----------CcChhHHHHHHHHhc
Q 029078 37 LAAIQLGKQLVERNIDLVYGGG----------SIGLMGLVSQAVYDG 73 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg----------~~GlM~a~a~gA~~~ 73 (199)
+.|+.|+..|-++||.||+||- +.|+-++.++-.++.
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 3466677788889999999984 248888888877764
No 271
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=30.90 E-value=1.6e+02 Score=24.25 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcC
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (199)
++....++.+|.+|+++ -.++. .-++.+...- ..+.|++++|.+.-. ++ ...-+.+..
T Consensus 156 ~~~~~~~~~~dl~lvlG-Tsl~v---~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~--~~~~~~i~g 214 (224)
T cd01412 156 LEAVEALAKADLFLVIG-TSGVV---YPAAGLPEEAKERGARVIEINPEPTP---------------LS--PIADFAFRG 214 (224)
T ss_pred HHHHHHHHcCCEEEEEC-cCccc---hhHHHHHHHHHHCCCeEEEECCCCCC---------------CC--CcCCEEEEC
Confidence 34445567899999976 33333 3333333321 357899999876321 11 123467778
Q ss_pred CHHHHHHHH
Q 029078 185 TAHELICKL 193 (199)
Q Consensus 185 d~ee~~~~l 193 (199)
|.+|+++.|
T Consensus 215 ~~~~~l~~l 223 (224)
T cd01412 215 KAGEVLPAL 223 (224)
T ss_pred CHHHHHHHh
Confidence 999988865
No 272
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=30.77 E-value=38 Score=30.86 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=17.0
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.||.|||+.|++-|++ |.++|-+|+=|=
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE 29 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIE 29 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEE
Confidence 4788999988876664 445677777763
No 273
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=30.76 E-value=1.2e+02 Score=22.20 Aligned_cols=13 Identities=8% Similarity=0.419 Sum_probs=6.2
Q ss_pred HHHHHhcCCeEEE
Q 029078 67 SQAVYDGGRHVLG 79 (199)
Q Consensus 67 a~gA~~~gg~viG 79 (199)
..-..+.|..+++
T Consensus 103 ~~~l~~~g~~~v~ 115 (140)
T TIGR01753 103 EERLKEAGATIIA 115 (140)
T ss_pred HHHHHHCCCEEec
Confidence 3333345666554
No 274
>PRK07308 flavodoxin; Validated
Probab=30.75 E-value=67 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=16.4
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNI 51 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~ 51 (199)
.|.|+.+|..++.. +.|+.+++.|.+.|+
T Consensus 3 ~~~IvY~S~tGnTe---~iA~~ia~~l~~~g~ 31 (146)
T PRK07308 3 LAKIVYASMTGNTE---EIADIVADKLRELGH 31 (146)
T ss_pred eEEEEEECCCchHH---HHHHHHHHHHHhCCC
Confidence 45555566666443 356666666655444
No 275
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.73 E-value=1e+02 Score=22.80 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=17.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
++|+|+|.|..... .++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 57999977654322 34566777777887764
No 276
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=30.68 E-value=94 Score=26.91 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCCc-chHHHHHHHHHHHcCCCCcccccceEE
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGY-YNSLLSFIDKAVDEGFIAPAARYIIVS 182 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g~-w~~l~~~l~~~~~~g~i~~~~~~~i~~ 182 (199)
..|....++.+|.+|+ +||=..+.-++.+...- .++.|++++|.+.. ++. .--+.+
T Consensus 205 ~~~a~~~~~~~Dlllv----vGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~------------------~~~~~i 262 (285)
T PRK05333 205 VAAARAALDAADAVLV----VGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADP------------------LLTLKV 262 (285)
T ss_pred HHHHHHHHhcCCEEEE----ECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCc------------------ceeEEE
Confidence 4566666788999888 56655554333322222 35679999987531 111 013677
Q ss_pred cCCHHHHHHHHHh
Q 029078 183 AQTAHELICKLES 195 (199)
Q Consensus 183 ~~d~ee~~~~l~~ 195 (199)
..+..+++..|.+
T Consensus 263 ~g~~~evL~~l~~ 275 (285)
T PRK05333 263 EASCAQALAALVA 275 (285)
T ss_pred eCCHHHHHHHHHH
Confidence 8899999998865
No 277
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=30.65 E-value=70 Score=24.22 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID 52 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~ 52 (199)
+|.|+.+|..++.. +.|+.+.+.|...|+.
T Consensus 2 ~i~IiY~S~tGnTe---~iA~~ia~~l~~~g~~ 31 (140)
T TIGR01754 2 RILLAYLSLSGNTE---EVAFMIQDYLQKDGHE 31 (140)
T ss_pred eEEEEEECCCChHH---HHHHHHHHHHhhCCee
Confidence 45555567776543 4567777777655554
No 278
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=30.59 E-value=3.5e+02 Score=23.21 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=38.5
Q ss_pred HHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHH
Q 029078 110 EMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAH 187 (199)
Q Consensus 110 ~~v~~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~e 187 (199)
.++..||++|.. ..|+|. =+.|++. .++||+.-+.+|. . + ++.++ ....++-.+|++
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~--~~lEAma------~G~Pvv~s~~~g~-~---e----~i~~~-----~~g~~~~~~d~~ 326 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISN--TILEAMA------SGLPVIATAVGGN-P---E----LVQHG-----VTGALVPPGDAV 326 (374)
T ss_pred HHHHhcCEEEeccccccCch--HHHHHHH------cCCCEEEcCCCCc-H---H----HhcCC-----CceEEeCCCCHH
Confidence 456889988743 245544 3667776 7899999776542 2 2 12111 112333357788
Q ss_pred HHHHHHHhh
Q 029078 188 ELICKLESK 196 (199)
Q Consensus 188 e~~~~l~~~ 196 (199)
++.+.|.++
T Consensus 327 ~la~~i~~l 335 (374)
T TIGR03088 327 ALARALQPY 335 (374)
T ss_pred HHHHHHHHH
Confidence 777777653
No 279
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=30.53 E-value=2.8e+02 Score=23.88 Aligned_cols=50 Identities=32% Similarity=0.381 Sum_probs=30.8
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecCCcCc-------HHHHHHHHHHHHcCCCCCcEEE
Q 029078 99 KAVSGMHQRKAEMARQADAFIALPGGYGT-------LEELLEVITWAQLGIHDKPVGL 149 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~IvlpGG~GT-------l~Ei~~~~~~~~~~~~~kPvvl 149 (199)
+...+-.+|-..+.+.|+.||-+..-.|+ .+++.+.+...+- ..++|+++
T Consensus 147 v~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~-~~~~Pv~v 203 (259)
T PF00290_consen 147 VAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKK-HTDLPVAV 203 (259)
T ss_dssp EETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHH-TTSS-EEE
T ss_pred ECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHh-hcCcceEE
Confidence 34456689999999999999998755554 3445544433222 23689977
No 280
>PLN02271 serine hydroxymethyltransferase
Probab=30.44 E-value=62 Score=31.34 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCC----------cChhHHHHHHHHhcCCeE
Q 029078 37 LAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHV 77 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~a~gA~~~gg~v 77 (199)
+-|+.|++.|.++||.||+||-. .|+.+..+...++.-|.+
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~ 492 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHIT 492 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeE
Confidence 45677888888999999998721 366677777777654433
No 281
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.34 E-value=3e+02 Score=23.63 Aligned_cols=50 Identities=28% Similarity=0.327 Sum_probs=32.2
Q ss_pred eecCCHHHHHHHHHHhcCEEEEe---cCCcCcH----HHHHHHHHHHHcCCCCCcEEE
Q 029078 99 KAVSGMHQRKAEMARQADAFIAL---PGGYGTL----EELLEVITWAQLGIHDKPVGL 149 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~Ivl---pGG~GTl----~Ei~~~~~~~~~~~~~kPvvl 149 (199)
+.+++-.+|-..+.+.|+.||.+ +|=.|.- +++.+.+...+- ..+.|+.+
T Consensus 151 v~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~v 207 (263)
T CHL00200 151 IAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIIL 207 (263)
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEE
Confidence 34444579999999999988877 6766662 334444432222 24688876
No 282
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.34 E-value=1.4e+02 Score=27.08 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=8.9
Q ss_pred HHhcCEEEEecCC
Q 029078 112 ARQADAFIALPGG 124 (199)
Q Consensus 112 v~~sDa~IvlpGG 124 (199)
....|++|+-+|-
T Consensus 66 ~~~~d~vv~~~g~ 78 (450)
T PRK14106 66 LEGVDLVVVSPGV 78 (450)
T ss_pred hhcCCEEEECCCC
Confidence 4567888877764
No 283
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.31 E-value=2.3e+02 Score=21.01 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCeEEEcCCC-cChhHHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcC
Q 029078 39 AIQLGKQLVERNIDLVYGGGS-IGLMGLVSQAVYDGGR-HVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQAD 116 (199)
Q Consensus 39 A~~lG~~lA~~G~~lv~GGg~-~GlM~a~a~gA~~~gg-~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sD 116 (199)
..++.+.+.+.....++|-|+ .|++...+.-..+.+. .+.++....+ . + -...++...|
T Consensus 3 ~~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~-----~-------------h-g~~~~~~~~~ 63 (153)
T cd05009 3 IKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEF-----K-------------H-GPIALVDEGT 63 (153)
T ss_pred HHHHHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHh-----c-------------c-ChhhhccCCC
Confidence 355667777777777777662 2333333333344432 3333321111 1 1 1122345566
Q ss_pred EEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 117 AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 117 a~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
.+|++-++-.|-+++..+....+ ..+.|++++.
T Consensus 64 ~vi~is~~g~t~~~~~~~~~~~~--~~~~~vi~it 96 (153)
T cd05009 64 PVIFLAPEDRLEEKLESLIKEVK--ARGAKVIVIT 96 (153)
T ss_pred cEEEEecCChhHHHHHHHHHHHH--HcCCEEEEEe
Confidence 66666544455555554443322 2345666663
No 284
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.23 E-value=65 Score=28.57 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=16.7
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCC
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDGGR 75 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~gg 75 (199)
.+..|+||||. |+=++.+....+.|.
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~ 63 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGA 63 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCC
Confidence 45666777764 776666666666555
No 285
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=30.16 E-value=45 Score=22.85 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=17.1
Q ss_pred cceEEcCCHHHHHHHHHhhh
Q 029078 178 YIIVSAQTAHELICKLESKA 197 (199)
Q Consensus 178 ~~i~~~~d~ee~~~~l~~~~ 197 (199)
..+++-+|.||+++.+.+|.
T Consensus 36 kkyvVkEsveEVi~kI~~y~ 55 (67)
T COG1582 36 KKYVVKESVEEVINKIIEYR 55 (67)
T ss_pred cEEEEcccHHHHHHHHHHHH
Confidence 45888999999999998764
No 286
>PRK00625 shikimate kinase; Provisional
Probab=30.05 E-value=2.1e+02 Score=22.76 Aligned_cols=78 Identities=19% Similarity=0.058 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC--CC----CCCCCCCCCCceeeecCCHHHHHHHHHHh
Q 029078 41 QLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK--TL----MPREITGDTVGEVKAVSGMHQRKAEMARQ 114 (199)
Q Consensus 41 ~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~--~~----~~~e~~~~~~~~~~~~~~m~~R~~~~v~~ 114 (199)
++-+.+...+..|.+|||. ++..-+...+..+|.+|-+-.+ .. ..+......-..-.+..-+..|....-+.
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ 142 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSI 142 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 3334555566666678764 4555555567777888777321 11 11111110000001122246777776666
Q ss_pred cCEEEE
Q 029078 115 ADAFIA 120 (199)
Q Consensus 115 sDa~Iv 120 (199)
||..|-
T Consensus 143 ad~~i~ 148 (173)
T PRK00625 143 ADYIFS 148 (173)
T ss_pred CCEEEe
Confidence 888764
No 287
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=29.95 E-value=83 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVER 49 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~ 49 (199)
.++|+|||||=.+..--+...|+++-+.+.-.
T Consensus 21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld 52 (243)
T PRK06973 21 PRRIGILGGTFDPIHDGHLALARRFADVLDLT 52 (243)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHHcCCC
Confidence 34699999998887777778888888777643
No 288
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=29.89 E-value=1.2e+02 Score=22.80 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCEEEE-ecCCcCcHHHHH-HHHHHHH---cC-CCCCcEEEEecC
Q 029078 106 QRKAEMARQADAFIA-LPGGYGTLEELL-EVITWAQ---LG-IHDKPVGLLNVD 153 (199)
Q Consensus 106 ~R~~~~v~~sDa~Iv-lpGG~GTl~Ei~-~~~~~~~---~~-~~~kPvvll~~~ 153 (199)
.+-.--+..||++|+ -|-=.|++.-.+ ..+.+.. .+ ..+||+.++...
T Consensus 62 ~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 62 QELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred HHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 344445688998554 554445544444 2233332 23 368999888443
No 289
>PRK13018 cell division protein FtsZ; Provisional
Probab=29.72 E-value=1.9e+02 Score=26.35 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=18.5
Q ss_pred cCCC-cChhHHHHHHHHhcCCeEEEEeC
Q 029078 56 GGGS-IGLMGLVSQAVYDGGRHVLGVIP 82 (199)
Q Consensus 56 GGg~-~GlM~a~a~gA~~~gg~viGv~P 82 (199)
|||. .|+=-.+++-|.+.+-.+++++.
T Consensus 123 GGGTGSGaapvIa~iake~g~ltv~vVt 150 (378)
T PRK13018 123 GGGTGTGAAPVVAEIAKEQGALVVGVVT 150 (378)
T ss_pred cCcchhhHHHHHHHHHHHcCCCeEEEEE
Confidence 4443 35556667888888888888753
No 290
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=29.67 E-value=1.3e+02 Score=25.21 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHc-CCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcC
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQL-GIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQ 184 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~-~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~ 184 (199)
.+....++.+|.+|+++ |--.+.-++.+... ...+.|++++|.+... ++. ..-+.+..
T Consensus 169 ~~a~~~~~~~dl~lviG----Tsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~---------------~~~--~~~~~i~~ 227 (242)
T PRK00481 169 DEAYEALEEADLFIVIG----TSLVVYPAAGLPYEAREHGAKTVEINLEPTP---------------LDS--LFDLVIHG 227 (242)
T ss_pred HHHHHHHhcCCEEEEEC----CCceEcCHhHHHHHHHHCCCeEEEECCCCCC---------------CCC--ccCEEEEC
Confidence 45555667899999976 33333323333321 2357899999976321 111 12377888
Q ss_pred CHHHHHHHHHh
Q 029078 185 TAHELICKLES 195 (199)
Q Consensus 185 d~ee~~~~l~~ 195 (199)
|.+++++.|.+
T Consensus 228 ~~~~~l~~l~~ 238 (242)
T PRK00481 228 KAGEVVPELVE 238 (242)
T ss_pred CHHHHHHHHHH
Confidence 99999998854
No 291
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=29.67 E-value=1.5e+02 Score=26.04 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=34.1
Q ss_pred EEEcCCCCCC--CHHHHHHHHHHHHHHHhCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 22 CVFCGSSPGK--SPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 22 ~V~ggs~~~~--~~~~~~~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
++.++||... +++.+ +++.+.|-+++... ++=||. |-|..+.+=+.+.+-.+|||
T Consensus 64 t~LgtsR~~~~~~~~~~---~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 64 TILGTARCPEFKTEEGR---QKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred ceeccCCCCccCCHHHH---HHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEee
Confidence 4556665432 22333 45566666665543 333555 99999988776678899997
No 292
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=29.65 E-value=3e+02 Score=22.45 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=28.5
Q ss_pred HHHHHhcCEEEEecCCc------------CcHHHHHHHHHHHHcCCCCCcEEEE-ecCCcch
Q 029078 109 AEMARQADAFIALPGGY------------GTLEELLEVITWAQLGIHDKPVGLL-NVDGYYN 157 (199)
Q Consensus 109 ~~~v~~sDa~IvlpGG~------------GTl~Ei~~~~~~~~~~~~~kPvvll-~~~g~w~ 157 (199)
...+......|+.|.+. -|=|.++..++ ..+ ...-++++ +.+|.|+
T Consensus 85 ~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA-~~l--~A~~Li~ltdVdGVy~ 143 (203)
T cd04240 85 TDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLA-KKL--GAKRLVIVTDVDGIYE 143 (203)
T ss_pred HHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHH-HHc--CCCEEEEEeCCccccC
Confidence 33345566678899877 68888876554 122 23344444 7788886
No 293
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=29.53 E-value=2e+02 Score=22.23 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
+++|.++|-.....+| .|+.+.+.++..++.+-+.|
T Consensus 2 ~~kVLFVC~gN~cRSp----mAE~l~~~~~~~~~~v~SAG 37 (139)
T COG0394 2 MMKVLFVCTGNICRSP----MAEALLRHLAPDNVEVDSAG 37 (139)
T ss_pred CceEEEEcCCCcccCH----HHHHHHHHhccCCeEEECCc
Confidence 5678888877666554 67889999988888877766
No 294
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=29.39 E-value=73 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=24.9
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
+++|+.|+|++-. +.... -.+..|+..||+.|+.++
T Consensus 1 ~~~~~~iai~~KG--GvGKT--t~~~nLa~~la~~g~kVL 36 (295)
T PRK13234 1 MSKLRQIAFYGKG--GIGKS--TTSQNTLAALVEMGQKIL 36 (295)
T ss_pred CCcceEEEEECCC--CccHH--HHHHHHHHHHHHCCCeEE
Confidence 4678899997322 33332 357789999999998873
No 295
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.27 E-value=2.9e+02 Score=26.47 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=42.1
Q ss_pred HhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe------------------------------EEEcCCCcCh
Q 029078 13 ALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID------------------------------LVYGGGSIGL 62 (199)
Q Consensus 13 ~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~------------------------------lv~GGg~~Gl 62 (199)
....+.++|+|+. +. ..+...+.+.++.++|.++|+. +++=|| .|.
T Consensus 285 ~w~~~~~~i~iv~--~~-~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG-DGT 360 (569)
T PRK14076 285 KWRIKPTKFGIVS--RI-DNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGG-DGT 360 (569)
T ss_pred hcccCCcEEEEEc--CC-CCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECC-cHH
Confidence 4455667899993 22 2466667888888888665542 222344 488
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 029078 63 MGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 63 M~a~a~gA~~~gg~viGv 80 (199)
|=-+++-....+-.++||
T Consensus 361 ~L~aa~~~~~~~~PilGi 378 (569)
T PRK14076 361 VLRASKLVNGEEIPIICI 378 (569)
T ss_pred HHHHHHHhcCCCCCEEEE
Confidence 777777666667788888
No 296
>PHA01630 putative group 1 glycosyl transferase
Probab=29.23 E-value=1.4e+02 Score=26.17 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCc
Q 029078 105 HQRKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGY 155 (199)
Q Consensus 105 ~~R~~~~v~~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~ 155 (199)
.+...-++..||+||.- ..|+|.. +.|+++ .++|||..+.+|.
T Consensus 200 ~~~l~~~y~~aDv~v~pS~~E~fgl~--~lEAMA------~G~PVIas~~gg~ 244 (331)
T PHA01630 200 DDDIYSLFAGCDILFYPVRGGAFEIP--VIEALA------LGLDVVVTEKGAW 244 (331)
T ss_pred HHHHHHHHHhCCEEEECCccccCChH--HHHHHH------cCCCEEEeCCCCc
Confidence 35556678999999863 4666654 778887 7999999887653
No 297
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.10 E-value=1.3e+02 Score=26.66 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
+.+|.+|++ ||=||+-..+... ..+++||+=+|.+ ||. +.+.+.|+++.+..|
T Consensus 71 ~~~D~vi~l-GGDGT~L~aar~~-----~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 71 DGCELVLVL-GGDGTILRAAELA-----RAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred cCCCEEEEE-cCCHHHHHHHHHh-----ccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc
Confidence 456766655 7789987665432 2357898877765 563 455666777666554
No 298
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=29.08 E-value=2.1e+02 Score=26.56 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA 175 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~ 175 (199)
.-|+-+=...++++++-|==+|||.|.+++..+.+-.-+ +||+-=..+.--|..++-|--....|+|+..
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy-~~viSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGY-TAVISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCC-eEEEecCCCCcccchHHHHHHHhCCCeeecC
Confidence 355555566689999999999999999999987776322 5666544333345555545444555666543
No 299
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=29.03 E-value=73 Score=21.81 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=14.8
Q ss_pred ceEEcCCHHHHHHHHHhhhc
Q 029078 179 IIVSAQTAHELICKLESKAV 198 (199)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~~~ 198 (199)
.++.++|++|+.+.+..+..
T Consensus 42 ~~~~~~~~~el~~~i~~ll~ 61 (92)
T PF13524_consen 42 HIITYNDPEELAEKIEYLLE 61 (92)
T ss_pred eEEEECCHHHHHHHHHHHHC
Confidence 46666799999988877643
No 300
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=28.86 E-value=75 Score=27.79 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCc-EEEE
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKP-VGLL 150 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kP-vvll 150 (199)
.--.|+..||=||++|+...+. .++.| +.++
T Consensus 58 ~~D~via~GGDGTv~evingl~-----~~~~~~Lgil 89 (301)
T COG1597 58 GYDTVIAAGGDGTVNEVANGLA-----GTDDPPLGIL 89 (301)
T ss_pred CCCEEEEecCcchHHHHHHHHh-----cCCCCceEEe
Confidence 3346777789999999998765 23455 6665
No 301
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=28.75 E-value=1.6e+02 Score=27.41 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=43.6
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHH-H
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLE-E 130 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~-E 130 (199)
.+|.|.|+.| ..+++.++..|.+|+.+-.+.....+.....+ + ..++. -.++.+|.+|...|-.++++ +
T Consensus 215 VlViG~G~IG--~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~-~---v~~l~----eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 215 VVVAGYGDVG--KGCAQRLRGLGARVIVTEVDPICALQAAMDGF-R---VMTME----EAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred EEEECCCHHH--HHHHHHHHhCCCEEEEEcCCchhhHHHHhcCC-E---ecCHH----HHHhCCCEEEECCCCHHHHHHH
Confidence 4566766544 34566677778887776322111111111111 1 12332 23568999999887666655 3
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCCc
Q 029078 131 LLEVITWAQLGIHDKPVGLLNVDGY 155 (199)
Q Consensus 131 i~~~~~~~~~~~~~kPvvll~~~g~ 155 (199)
.+.. .++-.+++|.+.+
T Consensus 285 ~~~~--------mK~GailiNvG~~ 301 (425)
T PRK05476 285 HMEA--------MKDGAILANIGHF 301 (425)
T ss_pred HHhc--------CCCCCEEEEcCCC
Confidence 3332 2333566676533
No 302
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=28.65 E-value=4.3e+02 Score=23.70 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHH---HHHHHHhcCCe-EEEEeCC-------CCCCCC-CC--CCCCc
Q 029078 31 KSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGL---VSQAVYDGGRH-VLGVIPK-------TLMPRE-IT--GDTVG 96 (199)
Q Consensus 31 ~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a---~a~gA~~~gg~-viGv~P~-------~~~~~e-~~--~~~~~ 96 (199)
+++.. +.-.+.+-..|+.|..+| .|.+.|.- +-|.+++..|. -++|+.- ++-|.. .. .+.+.
T Consensus 137 ND~Tl-~~L~~~Avs~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fg 212 (320)
T cd04823 137 NDETV-EVLCKQALVQAEAGADIV---APSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKG 212 (320)
T ss_pred CHHHH-HHHHHHHHHHHHhCCCEE---EcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCC
Confidence 34444 444556778899999999 46788864 45568877765 4777542 111111 00 01111
Q ss_pred e-----eeecCCH-HHHHHH--HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHH
Q 029078 97 E-----VKAVSGM-HQRKAE--MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVD 168 (199)
Q Consensus 97 ~-----~~~~~~m-~~R~~~--~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~ 168 (199)
+ +-....- ..|... +-+-+|.+.|=||.. -||=|.++-. ..+.|+..++++|=|. +++....
T Consensus 213 DRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~-YLDIi~~~k~-----~~~lPvaaYqVSGEYa----MikaAa~ 282 (320)
T cd04823 213 DKKTYQMDPANSREALREVALDIAEGADMVMVKPGMP-YLDIIRRVKD-----EFGVPTFAYQVSGEYA----MLKAAAQ 282 (320)
T ss_pred CccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCch-HHHHHHHHHH-----hcCCCEEEEEccHHHH----HHHHHHH
Confidence 1 1111111 122221 245599999999873 2222222111 2478999999987443 3444666
Q ss_pred cCCCCcc
Q 029078 169 EGFIAPA 175 (199)
Q Consensus 169 ~g~i~~~ 175 (199)
.|.++.+
T Consensus 283 ~G~~d~~ 289 (320)
T cd04823 283 NGWLDED 289 (320)
T ss_pred cCCCcHH
Confidence 7777653
No 303
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.53 E-value=95 Score=21.43 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCeEEE
Q 029078 40 IQLGKQLVERNIDLVY 55 (199)
Q Consensus 40 ~~lG~~lA~~G~~lv~ 55 (199)
..+++.|+++||.|+.
T Consensus 33 ~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 33 AHLAEFLAEQGYAVFA 48 (79)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5788999999999974
No 304
>PRK13054 lipid kinase; Reviewed
Probab=28.52 E-value=1.7e+02 Score=25.15 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=22.4
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.| .|+.-||=||++|+...+..... .+..|+.++
T Consensus 57 ~d-~vvv~GGDGTl~evv~~l~~~~~-~~~~~lgii 90 (300)
T PRK13054 57 VA-TVIAGGGDGTINEVATALAQLEG-DARPALGIL 90 (300)
T ss_pred CC-EEEEECCccHHHHHHHHHHhhcc-CCCCcEEEE
Confidence 44 56688999999999977632111 123577776
No 305
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=28.51 E-value=1.2e+02 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=32.0
Q ss_pred cCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCC
Q 029078 125 YGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFI 172 (199)
Q Consensus 125 ~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i 172 (199)
+=|+.|+.+.+....+....-|.|-+.. .||-+..++ ++..|.+
T Consensus 208 ~~~l~eilE~LmN~l~~~p~DpYv~i~~-~~WPpyie~---LlR~GIa 251 (268)
T PF11802_consen 208 LITLREILEILMNKLLDSPHDPYVKIDD-SFWPPYIEL---LLRSGIA 251 (268)
T ss_pred hhHHHHHHHHHHHHhcCCCCCCceecCc-ccChHHHHH---HHHcCCe
Confidence 3467799999987777654469888765 499999998 4445543
No 306
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.29 E-value=2.9e+02 Score=24.14 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=20.8
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.+.++.|| .|.|=-+++-+...+-.++||-
T Consensus 66 dlvi~lGG--DGT~L~aa~~~~~~~~PilGIN 95 (292)
T PRK01911 66 DMVISIGG--DGTFLRTATYVGNSNIPILGIN 95 (292)
T ss_pred CEEEEECC--cHHHHHHHHHhcCCCCCEEEEe
Confidence 45555554 4888777777766677888883
No 307
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=28.24 E-value=2.5e+02 Score=20.75 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCc-----CcHHHHHHHHHHHHc
Q 029078 66 VSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGY-----GTLEELLEVITWAQL 140 (199)
Q Consensus 66 ~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~-----GTl~Ei~~~~~~~~~ 140 (199)
+.+.+++.|-+++.|-.+. +|...-++.+|-.+.+|++. =|.+++..+...
T Consensus 17 ~~ra~r~~Gi~tv~v~s~~---------------------d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~--- 72 (110)
T PF00289_consen 17 IIRALRELGIETVAVNSNP---------------------DTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK--- 72 (110)
T ss_dssp HHHHHHHTTSEEEEEEEGG---------------------GTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH---
T ss_pred HHHHHHHhCCcceeccCch---------------------hcccccccccccceecCcchhhhhhccHHHHhhHhhh---
Confidence 4667888898999984321 11223456778777777665 677777766642
Q ss_pred CCCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 029078 141 GIHDKPVGLLNVDGYYNSLLSFIDKAVDEG 170 (199)
Q Consensus 141 ~~~~kPvvll~~~g~w~~l~~~l~~~~~~g 170 (199)
.....++.+-||-+.=.+|-+.+.+.|
T Consensus 73 ---~g~~~i~pGyg~lse~~~fa~~~~~~g 99 (110)
T PF00289_consen 73 ---EGADAIHPGYGFLSENAEFAEACEDAG 99 (110)
T ss_dssp ---TTESEEESTSSTTTTHHHHHHHHHHTT
T ss_pred ---hcCcccccccchhHHHHHHHHHHHHCC
Confidence 233444444455555445444454443
No 308
>PRK14557 pyrH uridylate kinase; Provisional
Probab=28.24 E-value=94 Score=26.46 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=22.5
Q ss_pred ccceEEE-EcCCCCCCCH---HHHHHHHHHHHHHH---hCCC--eEEEcCCC
Q 029078 17 RFKRVCV-FCGSSPGKSP---SYQLAAIQLGKQLV---ERNI--DLVYGGGS 59 (199)
Q Consensus 17 ~~~~I~V-~ggs~~~~~~---~~~~~A~~lG~~lA---~~G~--~lv~GGg~ 59 (199)
+.++|.+ |||+....+. .-.+..+++.+.|+ +.|+ .||.|||.
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 3444544 7777664321 01134555555555 4564 56778863
No 309
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.24 E-value=2.5e+02 Score=23.08 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 110 EMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
++-+..|++|+.|.......++...+. ..+.|+++++.
T Consensus 51 ~~~~~vdgiii~~~~~~~~~~~i~~~~-----~~~iPvV~~~~ 88 (272)
T cd06313 51 MASQGWDFIAVDPLGIGTLTEAVQKAI-----ARGIPVIDMGT 88 (272)
T ss_pred HHHcCCCEEEEcCCChHHhHHHHHHHH-----HCCCcEEEeCC
Confidence 344558999998865554455433222 24678888764
No 310
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=28.22 E-value=2.7e+02 Score=21.26 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=34.9
Q ss_pred cceEEEEcCCCC--CCCHHHHHHHHHHHHHHHhCCCeEEE-----cCCCcChhHHHHH
Q 029078 18 FKRVCVFCGSSP--GKSPSYQLAAIQLGKQLVERNIDLVY-----GGGSIGLMGLVSQ 68 (199)
Q Consensus 18 ~~~I~V~ggs~~--~~~~~~~~~A~~lG~~lA~~G~~lv~-----GGg~~GlM~a~a~ 68 (199)
-+.|.+...+.. .......+..+++++.|.++|..+-. +.+. |+...++.
T Consensus 68 gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 68 GREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred CceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 345666667652 23467778889999999999998732 5554 88877654
No 311
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=28.07 E-value=1.4e+02 Score=25.18 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=33.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLG 79 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viG 79 (199)
|++++++| .. +.-..|++.+++.||.++.|+. .-.++....+...+..++|
T Consensus 1 m~~~~i~G-tG--------niG~alA~~~a~ag~eV~igs~--r~~~~~~a~a~~l~~~i~~ 51 (211)
T COG2085 1 MMIIAIIG-TG--------NIGSALALRLAKAGHEVIIGSS--RGPKALAAAAAALGPLITG 51 (211)
T ss_pred CcEEEEec-cC--------hHHHHHHHHHHhCCCeEEEecC--CChhHHHHHHHhhcccccc
Confidence 56777774 43 1235688999999999999974 4555555555555555444
No 312
>PRK06924 short chain dehydrogenase; Provisional
Probab=28.03 E-value=1e+02 Score=24.93 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~ 29 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVI 29 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEE
No 313
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=27.98 E-value=70 Score=26.71 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
.++....++.+|.+|++ ||--.+.-++.+.+...++.|++++|.+.
T Consensus 162 ~~~~~~~~~~~Dlllvi----GTSl~v~p~~~l~~~~~~~~~~i~iN~~~ 207 (225)
T cd01411 162 IEEAIQAIEKADLLVIV----GTSFVVYPFAGLIDYRQAGANLIAINKEP 207 (225)
T ss_pred HHHHHHHHhcCCEEEEE----CcCCeehhHHHHHHHHhCCCeEEEECCCC
Confidence 35666677889988874 35444444444443333578999998863
No 314
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=27.91 E-value=1.5e+02 Score=28.46 Aligned_cols=55 Identities=31% Similarity=0.375 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHH
Q 029078 106 QRKAEMARQADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLS 161 (199)
Q Consensus 106 ~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g~w~~l~~ 161 (199)
-...-+|..||.-|.+-|-.||==|++.-. ..|+. ...||.|-+|..-+-..+++
T Consensus 236 l~~i~~VA~Sd~tVLi~GETGtGKElvAra-IH~~S~R~~kPfV~~NCAAlPesLlE 291 (550)
T COG3604 236 LKEIEVVAKSDSTVLIRGETGTGKELVARA-IHQLSPRRDKPFVKLNCAALPESLLE 291 (550)
T ss_pred HHHHHHHhcCCCeEEEecCCCccHHHHHHH-HHhhCcccCCCceeeeccccchHHHH
Confidence 345567889999999999999999998533 33443 46799999998766665544
No 315
>PLN02929 NADH kinase
Probab=27.88 E-value=68 Score=28.40 Aligned_cols=34 Identities=38% Similarity=0.459 Sum_probs=22.3
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
..+|.+|++ ||=||+--.+.. + ...+||+=+|.+
T Consensus 63 ~~~Dlvi~l-GGDGT~L~aa~~-----~-~~~iPvlGIN~G 96 (301)
T PLN02929 63 RDVDLVVAV-GGDGTLLQASHF-----L-DDSIPVLGVNSD 96 (301)
T ss_pred CCCCEEEEE-CCcHHHHHHHHH-----c-CCCCcEEEEECC
Confidence 345765555 778998765432 2 356899888874
No 316
>PLN02591 tryptophan synthase
Probab=27.79 E-value=3.3e+02 Score=23.27 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEG 170 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~-----~l~~~~~~g 170 (199)
|++.+++.+.-.. .....|++++. ||+++.. |++.+.+.|
T Consensus 62 ~~~~~~~~~~~~r-~~~~~p~ilm~---Y~N~i~~~G~~~F~~~~~~aG 106 (250)
T PLN02591 62 TLDSVISMLKEVA-PQLSCPIVLFT---YYNPILKRGIDKFMATIKEAG 106 (250)
T ss_pred CHHHHHHHHHHHh-cCCCCCEEEEe---cccHHHHhHHHHHHHHHHHcC
Confidence 5667776664333 23567988874 7776544 666666655
No 317
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.77 E-value=2.3e+02 Score=24.16 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCe----------------EEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNID----------------LVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~----------------lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
|+++|+ .+. .-.+.+.++-++|.++|+. +++=|| .|.|=.+++.. +-.++||-
T Consensus 1 m~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGG-DGT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YRE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGG-DGTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECC-cHHHHHHHHHc---CCCEEEEe
Confidence 356777 221 2335677788888776642 344445 48887666655 67788884
No 318
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.40 E-value=3.2e+02 Score=23.58 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=18.7
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
.+.++.| | .|.|-.+++ ....+-.++||-
T Consensus 59 d~vi~iG-G-DGTlL~a~~-~~~~~~pi~gIn 87 (277)
T PRK03708 59 DFIIAIG-G-DGTILRIEH-KTKKDIPILGIN 87 (277)
T ss_pred CEEEEEe-C-cHHHHHHHH-hcCCCCeEEEEe
Confidence 4555555 4 598877777 666666677763
No 319
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.35 E-value=3.1e+02 Score=23.90 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchH-----HHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHH
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNS-----LLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKL 193 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~-----l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l 193 (199)
|++..++.+....-.-...|++|+. ||++ +..|++.+.+.|. +-+.+.|=|-|.-+.+
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~---Y~Npi~~~Gie~F~~~~~~~Gv------dGlivpDLP~ee~~~~ 139 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMT---YYNPIFNYGIEKFLRRAKEAGV------DGLLVPDLPPEESDEL 139 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEE---eccHHHHhhHHHHHHHHHHcCC------CEEEeCCCChHHHHHH
Confidence 5556666554332222457999984 5554 5666777766663 2255666555544433
No 320
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=27.31 E-value=3.5e+02 Score=23.31 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=18.6
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
...+|+|+|+.|+ ++..-|+..|..++.+.
T Consensus 168 ~~VlV~G~G~vG~--~a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 168 DLVIVIGAGGVGG--YMVQTAKAMGAAVVAID 197 (349)
T ss_pred CEEEEECCCHHHH--HHHHHHHHcCCeEEEEc
Confidence 4556777654444 34566777787877763
No 321
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=27.31 E-value=1.5e+02 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHh----CCCeEEE---cCCC---cChhHHHHHHHHhcC
Q 029078 36 QLAAIQLGKQLVE----RNIDLVY---GGGS---IGLMGLVSQAVYDGG 74 (199)
Q Consensus 36 ~~~A~~lG~~lA~----~G~~lv~---GGg~---~GlM~a~a~gA~~~g 74 (199)
++.|+.+|..||+ .|+.-|. ||.. .|-.-|+++||.++|
T Consensus 79 ~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~G 127 (193)
T PRK08569 79 TPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAG 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcC
Confidence 3577888888886 4543321 4432 288999999999986
No 322
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=27.22 E-value=1.5e+02 Score=24.09 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=37.1
Q ss_pred CeEEEcCCCcChhHHH-HHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeee---cCCHHHHHHHHHHhcCEEEE
Q 029078 51 IDLVYGGGSIGLMGLV-SQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKA---VSGMHQRKAEMARQADAFIA 120 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~-a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~---~~~m~~R~~~~v~~sDa~Iv 120 (199)
.+.++=-. .|-|+.+ ++.|...|..|+=|.-.... ..++..+.+. +.+|.+.-.-.+..+|++|.
T Consensus 20 VR~ItN~S-SG~~G~~lA~~~~~~Ga~V~li~g~~~~----~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 20 VRFITNRS-SGKMGAALAEEAARRGAEVTLIHGPSSL----PPPPGVKVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp SEEEEES---SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred ceEecCCC-cCHHHHHHHHHHHHCCCEEEEEecCccc----cccccceEEEecchhhhhhhhccccCcceeEEE
Confidence 44555555 5999865 77788899999888532211 1222334443 34566666666778888775
No 323
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.21 E-value=2.3e+02 Score=20.03 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=53.0
Q ss_pred EEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcC--cHHH
Q 029078 53 LVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYG--TLEE 130 (199)
Q Consensus 53 lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~G--Tl~E 130 (199)
++-||- ....+..-+-+.+.|+..+-. .... .. .....+-.-.+..+|.+|++-+=+. +...
T Consensus 3 liVGG~-~~~~~~~~~~~~~~G~~~~~h--g~~~----~~---------~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~ 66 (97)
T PF10087_consen 3 LIVGGR-EDRERRYKRILEKYGGKLIHH--GRDG----GD---------EKKASRLPSKIKKADLVIVFTDYVSHNAMWK 66 (97)
T ss_pred EEEcCC-cccHHHHHHHHHHcCCEEEEE--ecCC----CC---------ccchhHHHHhcCCCCEEEEEeCCcChHHHHH
Confidence 344552 356666666677788877766 1110 00 1112344556788999999988763 3443
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHH
Q 029078 131 LLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDK 165 (199)
Q Consensus 131 i~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~ 165 (199)
+-.... ..++|+++.+.. =|..+...|++
T Consensus 67 vk~~ak-----k~~ip~~~~~~~-~~~~l~~~l~~ 95 (97)
T PF10087_consen 67 VKKAAK-----KYGIPIIYSRSR-GVSSLERALER 95 (97)
T ss_pred HHHHHH-----HcCCcEEEECCC-CHHHHHHHHHh
Confidence 333221 368999998755 35666665544
No 324
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.20 E-value=2.1e+02 Score=24.79 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=31.3
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccch-----HHHHHHHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYN-----SLLSFIDKAVD 168 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w~-----~l~~~l~~~~~ 168 (199)
+.+|.+|++ ||=||+-..+..+. ..++||+=+|.+ ||.. .+.+.++++.+
T Consensus 41 ~~~d~vi~i-GGDGT~L~aa~~~~-----~~~~PilgIn~G~lGFL~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 41 QRAQLAIVI-GGDGNMLGRARVLA-----KYDIPLIGINRGNLGFLTDIDPKNAYEQLEACLE 97 (272)
T ss_pred cCCCEEEEE-CCcHHHHHHHHHhc-----cCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHh
Confidence 346766665 67899887654432 346898877764 6643 44555666665
No 325
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=27.17 E-value=90 Score=26.98 Aligned_cols=47 Identities=30% Similarity=0.462 Sum_probs=0.0
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--CcchHHH-HHHHHHHHc
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYNSLL-SFIDKAVDE 169 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w~~l~-~~l~~~~~~ 169 (199)
+|+..||=||+........ ...+||+=+|.+ ||..++. +-++.+.++
T Consensus 58 ~ivvlGGDGtlL~~~~~~~-----~~~~pilgin~G~lGFLt~~~~~~~~~~~~~ 107 (281)
T COG0061 58 LIVVLGGDGTLLRAARLLA-----RLDIPVLGINLGHLGFLTDFEPDELEKALDA 107 (281)
T ss_pred EEEEeCCcHHHHHHHHHhc-----cCCCCEEEEeCCCcccccccCHHHHHHHHHH
No 326
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=27.05 E-value=1.3e+02 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=23.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|+.++|.|.|..+... ..+++-+.|.++|+.+.
T Consensus 2 ~~Il~ivG~k~SGKTT----Lie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKTT----LIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChhh----HHHHHHHHHHhCCcEEE
Confidence 5678888888777443 34667777777887663
No 327
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=26.95 E-value=2.1e+02 Score=24.32 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=21.2
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCC-CcEEEEe
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHD-KPVGLLN 151 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~-kPvvll~ 151 (199)
.| +|+.-||=||+.|+...+. . ... .|+.++.
T Consensus 58 ~d-~ivv~GGDGTl~~v~~~l~--~--~~~~~~lgiiP 90 (293)
T TIGR00147 58 VD-TVIAGGGDGTINEVVNALI--Q--LDDIPALGILP 90 (293)
T ss_pred CC-EEEEECCCChHHHHHHHHh--c--CCCCCcEEEEc
Confidence 45 5666899999999987663 1 122 3676664
No 328
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=26.71 E-value=87 Score=24.08 Aligned_cols=58 Identities=22% Similarity=0.157 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE------cCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY------GGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~------GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
+.|+|.|.+..+.. -.++.|.+.|.++|+.+.+ |.......+.=.... ++|...+.+.
T Consensus 1 pvv~VvG~~~sGKT----Tl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~ 64 (140)
T PF03205_consen 1 PVVQVVGPKNSGKT----TLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVS 64 (140)
T ss_dssp -EEEEEESTTSSHH----HHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEE
T ss_pred CEEEEECCCCCCHH----HHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEE
Confidence 47889988776633 3567888899999988751 222223333333334 6676555553
No 329
>PRK05867 short chain dehydrogenase; Provisional
Probab=26.57 E-value=3.5e+02 Score=21.90 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
+++-|.|+++ -...++.+.|+++|+.|+..+-...-.+...+...+.++.+..+
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
No 330
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=26.43 E-value=69 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCC-CHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGK-SPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~-~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|.|+.++...- .-+. ..+..-=..|-+.|+.+..=+
T Consensus 2 kkVlills~~~~~dG~e~-~E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEI-HEAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CEEEEEEccCCCCCCEeh-hHHHHHHHHHHHCCCEEEEEe
Confidence 4677876532221 1122 223345567778898876643
No 331
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=26.37 E-value=87 Score=25.88 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 029078 105 HQRKAEMARQADAFIALPGGYGTLEELLEV 134 (199)
Q Consensus 105 ~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~ 134 (199)
-.|.+++...+|-|++---|+||.+|.|.+
T Consensus 68 lqrerliytigdrflfklpgwgtiseafhv 97 (279)
T KOG4321|consen 68 LQRERLIYTIGDRFLFKLPGWGTISEAFHV 97 (279)
T ss_pred HhhhhheEeecceeEEeCCCccchhhhhcc
Confidence 588888888899999888889999999854
No 332
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=26.26 E-value=1.7e+02 Score=22.82 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=10.5
Q ss_pred hHHHHHHHHhcCCeEEEEeC
Q 029078 63 MGLVSQAVYDGGRHVLGVIP 82 (199)
Q Consensus 63 M~a~a~gA~~~gg~viGv~P 82 (199)
|+.+.+-..+.|..++|-.|
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~ 119 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWP 119 (167)
T ss_pred HHHHHHHHHHcCCeEEceec
Confidence 44444444455666666543
No 333
>PRK08264 short chain dehydrogenase; Validated
Probab=26.22 E-value=3.4e+02 Score=21.60 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=16.5
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCC-eEEEE
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYDGGR-HVLGV 80 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gg-~viGv 80 (199)
..+|+||.. |+=.++++...+.|- .|+.+
T Consensus 8 ~vlItGgsg-~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 8 VVLVTGANR-GIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred EEEEECCCc-hHHHHHHHHHHHCCcccEEEE
Confidence 445666543 666666666666655 55444
No 334
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=26.22 E-value=5.5e+02 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhc-----C-CeEEEEe
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDG-----G-RHVLGVI 81 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~-----g-g~viGv~ 81 (199)
-...|||+||+.--|-++.+++... + ..++|+.
T Consensus 88 ~~iaIvT~GG~~PGlN~vIr~iv~~~~~~~~v~~V~Gi~ 126 (459)
T PTZ00286 88 VKAGIVTCGGLCPGLNVVIRELVMNLINNYGVKTIYGAK 126 (459)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4678899999988888777765442 3 3788883
No 335
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=26.20 E-value=2.3e+02 Score=25.43 Aligned_cols=47 Identities=30% Similarity=0.294 Sum_probs=29.9
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSF 162 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~ 162 (199)
..=|.+|++||+.||..-+..-+. +++ +..+||=++..+--+...+.
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~~-~~~~ViG~~v~~~~~~~~~q 225 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QLG-PDVEVIGIDVSADPEKLKEQ 225 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hcc-CCCceEEEeecCCHHHHHHH
Confidence 446899999999999887764443 333 34677666665444443333
No 336
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=26.03 E-value=1.6e+02 Score=20.31 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=22.9
Q ss_pred CEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 116 DAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 116 Da~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
--+|.|| +|++|+..+.. .+++.. |--+++.+|
T Consensus 19 GKvi~lP---~SleeLl~ia~-~kfg~~--~~~v~~~dg 51 (69)
T PF11834_consen 19 GKVIWLP---DSLEELLKIAS-EKFGFS--ATKVLNEDG 51 (69)
T ss_pred CEEEEcC---ccHHHHHHHHH-HHhCCC--ceEEEcCCC
Confidence 4588899 69999998654 566663 555666554
No 337
>PLN02565 cysteine synthase
Probab=25.87 E-value=4.6e+02 Score=23.02 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHhC-----CCeEEEcCCCcChhHHHHHHHHhcC--CeEEEEeCC
Q 029078 40 IQLGKQLVER-----NIDLVYGGGSIGLMGLVSQAVYDGG--RHVLGVIPK 83 (199)
Q Consensus 40 ~~lG~~lA~~-----G~~lv~GGg~~GlM~a~a~gA~~~g--g~viGv~P~ 83 (199)
..+|.+|.+. .+.++.-| ..|++-.++++.++.+ -++|||-|.
T Consensus 159 ~t~a~Ei~~q~~~~~d~vv~~vG-~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 159 ETTGPEIWKGTGGKVDAFVSGIG-TGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCC-chHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 4444555442 34444434 4599999999888764 588999774
No 338
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=25.69 E-value=58 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=22.7
Q ss_pred CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHH
Q 029078 123 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFID 164 (199)
Q Consensus 123 GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~ 164 (199)
.+.||++|+++..+ .+ ++.++ -||+.++.|.+
T Consensus 152 ~~~~~~e~~fe~F~------~G--~~~~G--p~~dHVl~~W~ 183 (297)
T KOG1584|consen 152 PGPGTFEEFFESFC------NG--VVPYG--PWWDHVLGYWE 183 (297)
T ss_pred CCCCcHHHHHHHHh------CC--cCCcC--ChHHHHHHHHH
Confidence 56788999999886 22 33332 48898888866
No 339
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.66 E-value=2.1e+02 Score=23.45 Aligned_cols=10 Identities=0% Similarity=-0.353 Sum_probs=4.4
Q ss_pred HhcCEEEEec
Q 029078 113 RQADAFIALP 122 (199)
Q Consensus 113 ~~sDa~Ivlp 122 (199)
-+||.+...|
T Consensus 151 ~Hs~~v~~~~ 160 (209)
T PRK13146 151 VHSYYAQPAN 160 (209)
T ss_pred EeEEEEEcCC
Confidence 3455544344
No 340
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=25.46 E-value=2.7e+02 Score=25.69 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeE---EEcCCCcChhHHHHHHHHhcCCeEEEEeCCCC
Q 029078 33 PSYQLAAIQLGKQLVERNIDL---VYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTL 85 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~~G~~l---v~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~ 85 (199)
+-....+.+|-..+-++--+| |+|.|..=+|=.+.+.|++.||++.=..|..+
T Consensus 100 ~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvD 155 (441)
T COG4098 100 PGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVD 155 (441)
T ss_pred hhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCccc
Confidence 444566778888888876555 78999999999999999999999877778543
No 341
>PRK05866 short chain dehydrogenase; Provisional
Probab=25.28 E-value=2.9e+02 Score=23.38 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGS 59 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~ 59 (199)
++|-|.|+++ + ..+.+++.|+++|+.|+..+-.
T Consensus 41 k~vlItGasg-g-------IG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGASS-G-------IGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCCCc-H-------HHHHHHHHHHHCCCEEEEEECC
Confidence 4566776553 2 3566777778888888766543
No 342
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.26 E-value=4.5e+02 Score=22.78 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=76.6
Q ss_pred HHHhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCC
Q 029078 11 AAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREI 90 (199)
Q Consensus 11 ~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~ 90 (199)
.+......-++=|++.++.--.+.+ ...+-++.|.+.||.|.-= ..=.-.+++.-.+.|-. .|+|-.- |...
T Consensus 93 RE~~~t~wiKlEVi~d~~tLlPD~~--etl~Aae~Lv~eGF~VlPY---~~dD~v~arrLee~Gca--avMPl~a-PIGS 164 (262)
T COG2022 93 REALGTNWIKLEVIGDEKTLLPDPI--ETLKAAEQLVKEGFVVLPY---TTDDPVLARRLEEAGCA--AVMPLGA-PIGS 164 (262)
T ss_pred HHHccCCeEEEEEecCCcccCCChH--HHHHHHHHHHhCCCEEeec---cCCCHHHHHHHHhcCce--Eeccccc-cccC
Confidence 3334445557889977766544333 2356678899999999722 24455678878888765 5666432 1111
Q ss_pred CCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 91 TGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 91 ~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
. ..+. + ..=.+++++++|+-|++--|+||.+...+++.| +---+|+|+
T Consensus 165 g-~G~~------n-~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl------G~DaVL~NT 212 (262)
T COG2022 165 G-LGLQ------N-PYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL------GADAVLLNT 212 (262)
T ss_pred C-cCcC------C-HHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc------ccceeehhh
Confidence 0 0000 0 233567889999999999999999999988873 444556665
No 343
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=25.05 E-value=2e+02 Score=21.70 Aligned_cols=94 Identities=18% Similarity=0.229 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC-----ceeeecCCHHH
Q 029078 32 SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV-----GEVKAVSGMHQ 106 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~-----~~~~~~~~m~~ 106 (199)
.+...+.+..+.+.+.+.|-..++|-|. -.-.+..-+.+.++. .++-|.. .|.-..++.. .+.-....+..
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~--S~~~a~~~~~~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGH--SAAIASHFAADLGGL-FGVNRIL-LPAIALNDDALTAISNDLEYDEGFAR 93 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTH--HHHHHHHHHHHHHCH-SSSTSSS--SEEETTSTHHHHHHHHTTGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCch--hhhHHHHHHHHHhcC-cCCCccc-ccccccccchHhhhhcccchhhHHHH
Confidence 3556677888888888888888888764 333345556666543 1111110 0000000000 00011123333
Q ss_pred HHHHH--HHhcCEEEEecCCcCcHH
Q 029078 107 RKAEM--ARQADAFIALPGGYGTLE 129 (199)
Q Consensus 107 R~~~~--v~~sDa~IvlpGG~GTl~ 129 (199)
.-... ++..|.+|++-.+-.|..
T Consensus 94 ~~~~~~~~~~gDvli~iS~SG~s~~ 118 (138)
T PF13580_consen 94 QLLALYDIRPGDVLIVISNSGNSPN 118 (138)
T ss_dssp HHHHHTT--TT-EEEEEESSS-SHH
T ss_pred HHHHHcCCCCCCEEEEECCCCCCHH
Confidence 33334 688999999987766654
No 344
>PRK05920 aromatic acid decarboxylase; Validated
Probab=25.00 E-value=1.4e+02 Score=24.79 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=47.8
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHH--------HHcCCCCCcEEEEecCCcchH--HHHHHHHHHHcCC--CCcccccceE
Q 029078 114 QADAFIALPGGYGTLEELLEVITW--------AQLGIHDKPVGLLNVDGYYNS--LLSFIDKAVDEGF--IAPAARYIIV 181 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~--------~~~~~~~kPvvll~~~g~w~~--l~~~l~~~~~~g~--i~~~~~~~i~ 181 (199)
.+|++|+.|-..+|+.-+..=++- ..+ ..++|+++.-.+ .|.. -.+-++.+.+.|+ +++ ....+.
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L-~~~~pvvi~P~~-m~~~~~~~~nl~~L~~~G~~ii~P-~~g~y~ 169 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVL-KERRKLILVPRE-TPLSLIHLENMLKLAEAGAIILPA-IPAFYH 169 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHH-hcCCCEEEEeCC-CCCCHHHHHHHHHHHHCCCEEeCC-cccccC
Confidence 689999999999999877632211 112 256899987543 5542 2333556666664 332 233344
Q ss_pred EcCCHHHHHHHHH
Q 029078 182 SAQTAHELICKLE 194 (199)
Q Consensus 182 ~~~d~ee~~~~l~ 194 (199)
--++.+|.++++-
T Consensus 170 ~p~~~~~~~~f~~ 182 (204)
T PRK05920 170 KPQTIDDLVDFVV 182 (204)
T ss_pred CCCCHHHHHHHHH
Confidence 5567788877764
No 345
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.00 E-value=1.3e+02 Score=24.46 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 029078 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (199)
Q Consensus 21 I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 55 (199)
|+|+..+- .++-+.+....+-+.+.+.|+.++.
T Consensus 2 igvi~~~~--~~~~~~~~~~gi~~~~~~~g~~~~~ 34 (275)
T cd06320 2 YGVVLKTL--SNEFWRSLKEGYENEAKKLGVSVDI 34 (275)
T ss_pred eeEEEecC--CCHHHHHHHHHHHHHHHHhCCeEEE
Confidence 56665332 2455555555666666667777643
No 346
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.99 E-value=1.2e+02 Score=26.16 Aligned_cols=41 Identities=32% Similarity=0.618 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHH-----HHHHHHHcC
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLS-----FIDKAVDEG 170 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~-----~l~~~~~~g 170 (199)
|++.+++.+....-.....|++++. ||+++.. |++.+.+.|
T Consensus 70 ~~~~~~~~~~~ir~~~~~~pivlm~---Y~N~i~~~G~e~F~~~~~~aG 115 (259)
T PF00290_consen 70 TLEKIFELVKEIRKKEPDIPIVLMT---YYNPIFQYGIERFFKEAKEAG 115 (259)
T ss_dssp -HHHHHHHHHHHHHHCTSSEEEEEE----HHHHHHH-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCCCCCEEEEe---eccHHhccchHHHHHHHHHcC
Confidence 4667777665444334578999984 9988654 455555533
No 347
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=24.92 E-value=90 Score=27.87 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=34.9
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHh
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD 72 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~ 72 (199)
.++...-+|.-|+.++.... .+++||++|+.++-=+-...=-+++++.-.+
T Consensus 45 ~~~~g~WAVVTGaTDGIGKa-------yA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~ 95 (312)
T KOG1014|consen 45 KEKLGSWAVVTGATDGIGKA-------YARELAKRGFNVVLISRTQEKLEAVAKEIEE 95 (312)
T ss_pred HHhcCCEEEEECCCCcchHH-------HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 33445677777887775543 4567788999998877766666777666544
No 348
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.88 E-value=4.3e+02 Score=23.02 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred ceEEEEcCCCCCC---CHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHH--HHHHHhcCCeEEEEeCCCC
Q 029078 19 KRVCVFCGSSPGK---SPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLV--SQAVYDGGRHVLGVIPKTL 85 (199)
Q Consensus 19 ~~I~V~ggs~~~~---~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~--a~gA~~~gg~viGv~P~~~ 85 (199)
.-|.|.|++.... .++..+..+...+. +.....|+.|-|..+.-+++ ++-|.+.|..-+-++|..+
T Consensus 44 ~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~-~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 44 DGILTMGTFGECATLTWEEKQAFVATVVET-VAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred CEEEECcccccchhCCHHHHHHHHHHHHHH-hCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 4566665554432 34444444443333 44558888888766787666 4667888888888876544
No 349
>PRK06801 hypothetical protein; Provisional
Probab=24.75 E-value=4.7e+02 Score=22.82 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCeE-----EEcCCCcC------------hhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCC
Q 029078 32 SPSYQLAAIQLGKQLVERNIDL-----VYGGGSIG------------LMGLVSQAVYDGGRHVLGVIPKTLMPREITGDT 94 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~l-----v~GGg~~G------------lM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~ 94 (199)
.++-.+.++++.+...+.|..| .-||...+ -.+.+.+-+.+.|-..++| + ....+..
T Consensus 110 ~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-a-iGt~Hg~---- 183 (286)
T PRK06801 110 YEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-A-IGNAHGK---- 183 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-c-cCCCCCC----
Confidence 3555677888888877777776 12332211 1244455454667777777 2 1111111
Q ss_pred CceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHH
Q 029078 95 VGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEV 134 (199)
Q Consensus 95 ~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~ 134 (199)
+.. .+.--++|...+.+..+.-+|+-||.|+-+|-+..
T Consensus 184 y~~--~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~ 221 (286)
T PRK06801 184 YKG--EPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRR 221 (286)
T ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 100 01111567777777788899999999998877643
No 350
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=24.74 E-value=2.4e+02 Score=23.32 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCCeEEE-cCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCC-C-----CCCCCCceeeecCCHHHHHHHH
Q 029078 39 AIQLGKQLVERNIDLVY-GGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPR-E-----ITGDTVGEVKAVSGMHQRKAEM 111 (199)
Q Consensus 39 A~~lG~~lA~~G~~lv~-GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~-e-----~~~~~~~~~~~~~~m~~R~~~~ 111 (199)
|-.|++.==+.|=.++- |+|. |-+..-.- ..--.+++++| +..... + ...-.+..+.+..+-. -+.+
T Consensus 24 al~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AI--e~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L 97 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAI--ERDEEALELIERNAARFGVDNLEVVEGDA--PEAL 97 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEE--ecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhh
Confidence 44455543345555543 7775 76654333 23345799998 211000 0 0001122222221110 1122
Q ss_pred HHhcCE-EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCC
Q 029078 112 ARQADA-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGF 171 (199)
Q Consensus 112 v~~sDa-~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~ 171 (199)
-..++. .|+++|| |+++|+++++ |..+..-+ -++.|.- --+.+...++.+.+.|+
T Consensus 98 ~~~~~~daiFIGGg-~~i~~ile~~-~~~l~~gg--rlV~nai-tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 98 PDLPSPDAIFIGGG-GNIEEILEAA-WERLKPGG--RLVANAI-TLETLAKALEALEQLGG 153 (187)
T ss_pred cCCCCCCEEEECCC-CCHHHHHHHH-HHHcCcCC--eEEEEee-cHHHHHHHHHHHHHcCC
Confidence 233222 4556666 9999999876 44442211 3444432 12333344455666665
No 351
>PRK05569 flavodoxin; Provisional
Probab=24.72 E-value=1.1e+02 Score=22.95 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=29.1
Q ss_pred HHhcCEEEEecCCc-C--cH-HHHHHHHHHHH-cCCCCCcEEEEecCCcc-hHHHHHHHH-HHHcCC
Q 029078 112 ARQADAFIALPGGY-G--TL-EELLEVITWAQ-LGIHDKPVGLLNVDGYY-NSLLSFIDK-AVDEGF 171 (199)
Q Consensus 112 v~~sDa~IvlpGG~-G--Tl-~Ei~~~~~~~~-~~~~~kPvvll~~~g~w-~~l~~~l~~-~~~~g~ 171 (199)
+..+|++|+-..-+ + +. .++...+...+ +...+||++++...|+. ......++. +...|+
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~ 112 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGF 112 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCC
Confidence 45677765544221 1 21 23333333222 22357999999877654 234444443 333443
No 352
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=24.68 E-value=1.6e+02 Score=23.99 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|+.|+|+ +..-+.... -.|..|+..||+.|+.++
T Consensus 1 m~iI~v~-s~KGGvGKT--t~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 1 MKVIAIV-GVKGGVGKT--TLTANLASALKLLGEPVL 34 (246)
T ss_pred CcEEEEE-eCCCCccHH--HHHHHHHHHHHhCCCcEE
Confidence 4567777 444455544 357889999999998664
No 353
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.64 E-value=1.3e+02 Score=24.23 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
|++|.|.|+++ -....+.+.|+++|+.|+--
T Consensus 1 ~~~vlItGas~--------giG~~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 1 MKKILIIGATS--------DIARACARRYAAAGARLYLA 31 (243)
T ss_pred CcEEEEEcCCc--------HHHHHHHHHHHhcCCEEEEE
Confidence 34677776654 13456667777788876544
No 354
>KOG0503 consensus Asparaginase [Amino acid transport and metabolism]
Probab=24.60 E-value=1.2e+02 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.3
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
+..|+|||+.| .-||+|.+..+.++-- ..|||++.+.
T Consensus 120 ~~~~G~VV~HG-TDTLe~tAffls~~~~--t~KPIVitGa 156 (368)
T KOG0503|consen 120 KSYDGIVVTHG-TDTLEETAFFLSFTIN--TLKPIVITGA 156 (368)
T ss_pred cccCcEEEEcC-cchHHHHHHHHHHHHh--cCCcEEEecc
Confidence 44889999985 7999999877765432 2399998753
No 355
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.55 E-value=2e+02 Score=26.04 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=11.0
Q ss_pred HhcCEEEEecCCc
Q 029078 113 RQADAFIALPGGY 125 (199)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (199)
..+|++|.++||.
T Consensus 105 ~~~D~IiavGGGS 117 (395)
T PRK15454 105 SGCDGVIAFGGGS 117 (395)
T ss_pred cCcCEEEEeCChH
Confidence 4689999999985
No 356
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.55 E-value=2e+02 Score=25.15 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=33.2
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
.+|.+|++ ||=||+...+..+. .+++||+=+|.+ ||. +.+.+.++++.+..|
T Consensus 63 ~~d~vi~l-GGDGT~L~aa~~~~-----~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 63 QADLAIVV-GGDGNMLGAARVLA-----RYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred CCCEEEEE-CCcHHHHHHHHHhc-----CCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 46765555 77899987775442 246788877764 554 345666777665444
No 357
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.53 E-value=3.3e+02 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
++|.|.|+|+ + ..+.+.+.|+++|+.|+.-+-..--.+...+...+.|+.+..+
T Consensus 9 k~vlITGas~-g-------IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 9 QVVVITGASA-G-------VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CEEEEECCCC-H-------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4677776654 2 3466788888999998765432111223333334456666555
No 358
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=24.40 E-value=2.2e+02 Score=21.11 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHcCC--CCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC--HHHHHHHHH
Q 029078 127 TLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT--AHELICKLE 194 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~--~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d--~ee~~~~l~ 194 (199)
+++-+-.++...+... .-+-+.++|...+++.++..+.. |++++..+.+.++++ .+++.+++.
T Consensus 79 ~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~-----~l~~~~~~ki~~~~~~~~~~L~~~i~ 145 (158)
T smart00516 79 DLSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKP-----FLDEKTREKIRFVGNDSKEELLEYID 145 (158)
T ss_pred cHHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHh-----hcChhhhccEEEeCCCCHHHHHhhCC
Confidence 3444444444444332 23688889988666666665444 566666777888887 777777663
No 359
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=24.38 E-value=3.1e+02 Score=24.64 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.1
Q ss_pred HhcCEEEEecCCc
Q 029078 113 RQADAFIALPGGY 125 (199)
Q Consensus 113 ~~sDa~IvlpGG~ 125 (199)
..+|.+|.++||.
T Consensus 87 ~~~D~IiaiGGGS 99 (383)
T PRK09860 87 NNCDSVISLGGGS 99 (383)
T ss_pred cCCCEEEEeCCch
Confidence 4689999999985
No 360
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=24.37 E-value=2.1e+02 Score=23.71 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=18.7
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhCC--CeEEEcCC
Q 029078 24 FCGSSPGKSPSYQLAAIQLGKQLVERN--IDLVYGGG 58 (199)
Q Consensus 24 ~ggs~~~~~~~~~~~A~~lG~~lA~~G--~~lv~GGg 58 (199)
||||...+.+...+.++++.+.. +.| ..||.||+
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~ 41 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAM 41 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCC
Confidence 77776643344555555555533 344 45667764
No 361
>PLN02494 adenosylhomocysteinase
Probab=24.34 E-value=2.7e+02 Score=26.39 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=38.5
Q ss_pred eEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcH-HH
Q 029078 52 DLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTL-EE 130 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl-~E 130 (199)
.+|.|.|+.| ..+++-++..|.+|+.+-.+.....+.....+. ..++. -.++.+|.||...|..+.+ .+
T Consensus 257 VvViGyG~IG--r~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~----vv~le----Eal~~ADVVI~tTGt~~vI~~e 326 (477)
T PLN02494 257 AVICGYGDVG--KGCAAAMKAAGARVIVTEIDPICALQALMEGYQ----VLTLE----DVVSEADIFVTTTGNKDIIMVD 326 (477)
T ss_pred EEEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe----eccHH----HHHhhCCEEEECCCCccchHHH
Confidence 3466777655 455666777788888773322110010011111 11332 2457899999988877765 33
Q ss_pred HHH
Q 029078 131 LLE 133 (199)
Q Consensus 131 i~~ 133 (199)
.+.
T Consensus 327 ~L~ 329 (477)
T PLN02494 327 HMR 329 (477)
T ss_pred HHh
Confidence 443
No 362
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.33 E-value=54 Score=25.00 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=17.5
Q ss_pred EEEecCCcCcHHHHH-H---HHHHHHc-CCCCCcEEEE
Q 029078 118 FIALPGGYGTLEELL-E---VITWAQL-GIHDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~-~---~~~~~~~-~~~~kPvvll 150 (199)
.|++|||.|..+-+. . +..+.+. ..++|||..+
T Consensus 40 alilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaI 77 (147)
T PF01965_consen 40 ALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAI 77 (147)
T ss_dssp EEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEec
Confidence 688999999665555 1 1222121 1257888765
No 363
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.22 E-value=1.8e+02 Score=25.36 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=32.8
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
.+|.+|+ -||=||+.+.+..+. ..++|++=+|.+ ||. +.+.+.|+++.+..|
T Consensus 63 ~~d~vi~-~GGDGt~l~~~~~~~-----~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 63 RADLAVV-LGGDGTMLGIGRQLA-----PYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred CCCEEEE-ECCcHHHHHHHHHhc-----CCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCc
Confidence 4566555 577899998876542 246788766664 454 345666777665443
No 364
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=24.18 E-value=1.1e+02 Score=22.11 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=30.8
Q ss_pred EecCCcchHHHHHHHHHHHcCCCCcccccceEEc-----CCHHHHHHHHHhhhc
Q 029078 150 LNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSA-----QTAHELICKLESKAV 198 (199)
Q Consensus 150 l~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~-----~d~ee~~~~l~~~~~ 198 (199)
+..+.+.+.++..+.++++. |+-.++|+.- ++|+.+++.++++.+
T Consensus 27 ~~~ee~~d~lv~hF~~iteH----P~gSDLIfYP~~~~edsPegIv~~vKeWRa 76 (85)
T PF01320_consen 27 LKTEEEHDELVDHFEKITEH----PDGSDLIFYPEDGREDSPEGIVKEVKEWRA 76 (85)
T ss_dssp SSSCHHHHHHHHHHHHHH------TTTTHHHHS-STTSTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC----CCCCceeeeCCCCCCCCHHHHHHHHHHHHH
Confidence 44556778888888777653 4555666554 589999999998764
No 365
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.08 E-value=2.4e+02 Score=24.14 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=5.6
Q ss_pred cCEEEEecCC
Q 029078 115 ADAFIALPGG 124 (199)
Q Consensus 115 sDa~IvlpGG 124 (199)
.|++|||++|
T Consensus 45 ~d~ivVLGa~ 54 (239)
T PRK10834 45 RQVGVVLGTA 54 (239)
T ss_pred CCEEEEcCCc
Confidence 4556666544
No 366
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.07 E-value=1.3e+02 Score=24.49 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++-|.|+++. ..+.+++.++++|+.|+.-+
T Consensus 3 ~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 3 VVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred EEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 5666665542 34567777778888876543
No 367
>PRK14072 6-phosphofructokinase; Provisional
Probab=24.06 E-value=2.2e+02 Score=26.32 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=31.6
Q ss_pred EEEcCCCCCC-----CHHHHHHHHHHHHHHHhCCCe-EEEcCCCcChhHHHHHHHH---hcC--CeEEEE
Q 029078 22 CVFCGSSPGK-----SPSYQLAAIQLGKQLVERNID-LVYGGGSIGLMGLVSQAVY---DGG--RHVLGV 80 (199)
Q Consensus 22 ~V~ggs~~~~-----~~~~~~~A~~lG~~lA~~G~~-lv~GGg~~GlM~a~a~gA~---~~g--g~viGv 80 (199)
++.++||... +++.+ .++.+.|-+.|+. |++=||. |-|..+.+=+. +.| -.+|||
T Consensus 73 t~LgssR~~~~~~~~~~~~~---~~~~~~l~~~~Id~LivIGGd-gS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 73 GALGSCRYKLKSLEEDRAEY---ERLLEVFKAHDIGYFFYNGGN-DSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred eEeccCCCCCcccccChHHH---HHHHHHHHHcCCCEEEEECCh-HHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3566666442 23333 4455666666543 2333555 99988876433 355 688998
No 368
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=24.06 E-value=1.1e+02 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=16.9
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHHh
Q 029078 24 FCGSSPGKSPSYQLAAIQLGKQLVE 48 (199)
Q Consensus 24 ~ggs~~~~~~~~~~~A~~lG~~lA~ 48 (199)
||||...+.+.+.+.++++.+....
T Consensus 6 ~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 6 FGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred ECchhcCCHHHHHHHHHHHHHHHHC
Confidence 7888876555666667777666543
No 369
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=24.02 E-value=2.5e+02 Score=24.94 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=32.4
Q ss_pred EEEEcCCCCCC--CHHHHHHHHHHHHHHHhCCCeE-EEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 21 VCVFCGSSPGK--SPSYQLAAIQLGKQLVERNIDL-VYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 21 I~V~ggs~~~~--~~~~~~~A~~lG~~lA~~G~~l-v~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
=+++++||... +++.+ ++..+.|-++++.- ++=||. |-|..+.+=+. .|-.+|||
T Consensus 64 Gt~LgtsR~~~~~~~~~~---~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e-~~i~vigi 121 (317)
T cd00763 64 GTFLGSARFPEFKDEEGQ---AKAIEQLKKHGIDALVVIGGD-GSYMGAMRLTE-HGFPCVGL 121 (317)
T ss_pred CeeeccCCCCccCCHHHH---HHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHH-cCCCEEEe
Confidence 34666666432 23333 45556666665543 333455 99988877443 47788888
No 370
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=23.83 E-value=3.2e+02 Score=20.62 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=40.2
Q ss_pred ecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcc
Q 029078 100 AVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPA 175 (199)
Q Consensus 100 ~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~ 175 (199)
-..+++.|-..++...|.= . ..++||+....+|..+.=++.|++++++|-|+.+
T Consensus 54 d~~~~~~r~k~~l~~~~~~--------~--------------l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ne 107 (110)
T PF06819_consen 54 DRSSFFKRFKFALKTEDGS--------A--------------LTGEKIISTDAEGLSKEDIEKLKKLVEEGKIENE 107 (110)
T ss_pred ecccHHHHHHHHHHhcccc--------c--------------ccCCeEEeccccCCCHHHHHHHHHHHHcCCCccc
Confidence 3456777777777655420 0 0268999999999999988999999999988754
No 371
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=23.80 E-value=49 Score=29.98 Aligned_cols=45 Identities=31% Similarity=0.445 Sum_probs=27.6
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcC-CCCCcEEEEecCCcchHHHHHHHHHHHcC
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVDEG 170 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~-~~~kPvvll~~~g~w~~l~~~l~~~~~~g 170 (199)
+=+-|+|.||+|| .++ -|- ..+||.+=+. -+.=+.-++++++..|
T Consensus 9 ~vkaiILvGG~GT--RLr------PLT~t~pKPlVpfg---n~pmI~hqieal~nsG 54 (371)
T KOG1322|consen 9 SVKAIILVGGYGT--RLR------PLTLTRPKPLVPFG---NKPMILHQIEALINSG 54 (371)
T ss_pred ceeEEEEecCCCc--eee------ceeccCCCcccccC---cchhhHHHHHHHHhCC
Confidence 4467999999999 443 121 2567777543 3344445566777655
No 372
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.79 E-value=2.1e+02 Score=26.14 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred cCEEEEecCCcCcHHHHH----HHHHHHHcCCCCCcEEEEec--CCcch--HHHHHHHHHHHcC--CCCcc------ccc
Q 029078 115 ADAFIALPGGYGTLEELL----EVITWAQLGIHDKPVGLLNV--DGYYN--SLLSFIDKAVDEG--FIAPA------ARY 178 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~----~~~~~~~~~~~~kPvvll~~--~g~w~--~l~~~l~~~~~~g--~i~~~------~~~ 178 (199)
+|++|+.|-..+|+.-+. ..+-....-...+|+++.-. +.+|+ -..+-+..+.+.| ++++. ...
T Consensus 79 aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~ 158 (390)
T TIGR00521 79 ADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDE 158 (390)
T ss_pred cCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccccccc
Q ss_pred ceEEcCCHHHHHHHHHhhh
Q 029078 179 IIVSAQTAHELICKLESKA 197 (199)
Q Consensus 179 ~i~~~~d~ee~~~~l~~~~ 197 (199)
-.--..+++++++++.+..
T Consensus 159 g~g~~~~~~~i~~~v~~~~ 177 (390)
T TIGR00521 159 GKGRLAEPETIVKAAEREF 177 (390)
T ss_pred cCCCCCCHHHHHHHHHHHH
No 373
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=23.79 E-value=81 Score=27.99 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHhHHHHhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 5 QQQQQAAAALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 5 ~~~~~~~~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
+....+++.++.+-++|.|.|++.. ....+.+.|.++||.|+
T Consensus 8 ~~~~~~~~~~~~~~~~IlVtGgtGf--------IG~~l~~~L~~~G~~V~ 49 (370)
T PLN02695 8 LAELEREPYWPSEKLRICITGAGGF--------IASHIARRLKAEGHYII 49 (370)
T ss_pred hhhcCCCCCCCCCCCEEEEECCccH--------HHHHHHHHHHhCCCEEE
Confidence 3445556667777789999987652 35667788888898875
No 374
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=23.74 E-value=2e+02 Score=24.15 Aligned_cols=40 Identities=15% Similarity=-0.001 Sum_probs=31.0
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
.++...|+|||||=.+...-+...|+..-+.+...++.+|
T Consensus 18 ~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v 57 (236)
T PLN02945 18 GPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVL 57 (236)
T ss_pred cCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Confidence 3566789999999887777777888887888877776554
No 375
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=23.65 E-value=2.1e+02 Score=26.17 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=38.9
Q ss_pred eecCCHHHHHHHHHHhcCE-EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccc
Q 029078 99 KAVSGMHQRKAEMARQADA-FIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAAR 177 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa-~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~ 177 (199)
.+.+-+.. +++| .+... ..+--||.+++.|... +++|++.+- -|.|.... .+.+.+.|..-.=+.
T Consensus 326 ~~~~W~PQ-~~lL-~hp~v~~fitHgG~~s~~Ea~~---------~gvP~l~~P--~~~DQ~~n-a~~~~~~G~g~~l~~ 391 (500)
T PF00201_consen 326 LIVKWLPQ-NDLL-AHPRVKLFITHGGLNSTQEALY---------HGVPMLGIP--LFGDQPRN-AARVEEKGVGVVLDK 391 (500)
T ss_dssp EEESS--H-HHHH-TSTTEEEEEES--HHHHHHHHH---------CT--EEE-G--CSTTHHHH-HHHHHHTTSEEEEGG
T ss_pred EEeccccc-hhhh-hcccceeeeeccccchhhhhhh---------ccCCccCCC--CcccCCcc-ceEEEEEeeEEEEEe
Confidence 44455553 4554 34443 5566889888887753 799999873 14455443 456677775321111
Q ss_pred cceEEcCCHHHHHHHHHhh
Q 029078 178 YIIVSAQTAHELICKLESK 196 (199)
Q Consensus 178 ~~i~~~~d~ee~~~~l~~~ 196 (199)
+.+ +.+++.+.|++.
T Consensus 392 ~~~----~~~~l~~ai~~v 406 (500)
T PF00201_consen 392 NDL----TEEELRAAIREV 406 (500)
T ss_dssp GC-----SHHHHHHHHHHH
T ss_pred cCC----cHHHHHHHHHHH
Confidence 122 456666665543
No 376
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=23.63 E-value=51 Score=30.31 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCC----------cChhHHHHHHHHhcCCeEEE
Q 029078 36 QLAAIQLGKQLVERNIDLVYGGGS----------IGLMGLVSQAVYDGGRHVLG 79 (199)
Q Consensus 36 ~~~A~~lG~~lA~~G~~lv~GGg~----------~GlM~a~a~gA~~~gg~viG 79 (199)
.+-|+.|++.|.++|+.|++||=. .|+-+.-+..+++.-|.++-
T Consensus 306 v~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 306 VKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 356778888899999999987521 24555556667766655554
No 377
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.62 E-value=1.9e+02 Score=23.27 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
+-+..|++|+.|--...+.++.+-+.- .+.||++++..
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~-----~gIpvv~~d~~ 89 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKA-----AGIPVVTVDSD 89 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHH-----TTSEEEEESST
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhh-----cCceEEEEecc
Confidence 345588999888887666666654431 46788888655
No 378
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.61 E-value=6.4e+02 Score=23.97 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCC--------------C--CC----------C
Q 029078 37 LAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLM--------------P--RE----------I 90 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~--------------~--~e----------~ 90 (199)
+.++..-+.+.+.|+.+|-|++. +++-|.+.|-..|=|...... . .. .
T Consensus 132 ~e~~~~~~~l~~~G~~~viG~~~------~~~~A~~~gl~~ili~s~esi~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~ 205 (526)
T TIGR02329 132 EDARSCVNDLRARGIGAVVGAGL------ITDLAEQAGLHGVFLYSADSVRQAFDDALDVARATRLRQAATLRSATRNQL 205 (526)
T ss_pred HHHHHHHHHHHHCCCCEEECChH------HHHHHHHcCCceEEEecHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Confidence 45666677888899999998763 567788888776655331100 0 00 0
Q ss_pred CC-CCCceeeecCC--H-HHHHHH-HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 029078 91 TG-DTVGEVKAVSG--M-HQRKAE-MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 159 (199)
Q Consensus 91 ~~-~~~~~~~~~~~--m-~~R~~~-~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l 159 (199)
.. ..+.+++ ..+ | ..|+.. -+..+|.-|.+-|-.||==|.+.-.-..+......|.+.+|...+-+.+
T Consensus 206 ~~~~~f~~ii-G~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 206 RTRYRLDDLL-GASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred ccccchhhee-eCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 00 0111222 222 2 122222 3466889999999999988887544333333456899999987665544
No 379
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.56 E-value=1.9e+02 Score=25.32 Aligned_cols=115 Identities=19% Similarity=0.288 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCcee
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTVGEV 98 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~~~~ 98 (199)
|+|+++.- . ..+...+.+.++.++|.++|+.++.--.. +. ..... ....+ .+.
T Consensus 1 m~igii~~--~-~~~~~~~~~~~i~~~l~~~g~~v~~~~~~-------~~-~~~~~--------~~~~~------~~~-- 53 (292)
T PRK01911 1 MKIAIFGQ--T-YQESASPYIQELFDELEERGAEVLIEEKF-------LD-FLKQD--------LKFHP------SYD-- 53 (292)
T ss_pred CEEEEEeC--C-CCHHHHHHHHHHHHHHHHCCCEEEEecch-------hh-hhccc--------ccccc------ccc--
Confidence 36889842 2 24666688999999999999998864311 00 11000 00000 000
Q ss_pred eecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccch-----HHHHHHHHHHHcCC
Q 029078 99 KAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYYN-----SLLSFIDKAVDEGF 171 (199)
Q Consensus 99 ~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w~-----~l~~~l~~~~~~g~ 171 (199)
....+ ..+.+.+|.+|++ ||=||+-..+..+ ...++||+=+|.+ ||.. .+.+.|+++.+..|
T Consensus 54 -~~~~~----~~~~~~~dlvi~l-GGDGT~L~aa~~~-----~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 54 -TFSDN----EELDGSADMVISI-GGDGTFLRTATYV-----GNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -cccch----hhcccCCCEEEEE-CCcHHHHHHHHHh-----cCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCc
Confidence 00000 1112346665555 7789987665433 2357898877765 5643 45666777666544
No 380
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.50 E-value=1.2e+02 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
.+|+|+|..+.+ ..||+.|.+.||.|+
T Consensus 11 l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 11 LKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp -EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred cEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 489999765543 468999999999875
No 381
>PRK04155 chaperone protein HchA; Provisional
Probab=23.46 E-value=77 Score=27.70 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=12.7
Q ss_pred EEEEecCCcCcHHHHH
Q 029078 117 AFIALPGGYGTLEELL 132 (199)
Q Consensus 117 a~IvlpGG~GTl~Ei~ 132 (199)
..|++|||.|.+..+.
T Consensus 149 DaV~iPGG~g~~~dL~ 164 (287)
T PRK04155 149 AAVFIPGGHGALIGLP 164 (287)
T ss_pred cEEEECCCCchHHHHh
Confidence 4789999999877654
No 382
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.37 E-value=1.4e+02 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|-|.|+++ -....+.+.|+++|+.|+.-+
T Consensus 2 k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASR--------GLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEEe
Confidence 4677776654 134567777788888876443
No 383
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.31 E-value=1.8e+02 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
+|+|+. +. ..+...+.+.++.++| ++|+.++..
T Consensus 2 ~i~iv~--~~-~~~~~~~~~~~i~~~l-~~g~~~~~~ 34 (271)
T PRK01185 2 KVAFVI--RK-DCKRCIKIAKSIIELL-PPDWEIIYE 34 (271)
T ss_pred EEEEEe--cC-CCHHHHHHHHHHHHHH-hcCCEEEEe
Confidence 588883 22 2456667888898888 678887765
No 384
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=23.30 E-value=2e+02 Score=25.90 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=33.1
Q ss_pred CEEEEecC---CcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHH
Q 029078 116 DAFIALPG---GYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICK 192 (199)
Q Consensus 116 Da~IvlpG---G~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~ 192 (199)
|+| ++|- |+|.. +.|+++ .++|||.-+.+|. . + ++.++ ....++-..|++++.+.
T Consensus 342 Dv~-v~pS~~E~fg~~--~lEAma------~G~PvV~s~~gg~-~---e----iv~~~-----~~G~lv~~~d~~~la~~ 399 (439)
T TIGR02472 342 GIF-VNPALTEPFGLT--LLEAAA------CGLPIVATDDGGP-R---D----IIANC-----RNGLLVDVLDLEAIASA 399 (439)
T ss_pred CEE-ecccccCCcccH--HHHHHH------hCCCEEEeCCCCc-H---H----HhcCC-----CcEEEeCCCCHHHHHHH
Confidence 665 4453 55542 566666 6899999877653 2 2 22211 12233335677777776
Q ss_pred HHhh
Q 029078 193 LESK 196 (199)
Q Consensus 193 l~~~ 196 (199)
|.+.
T Consensus 400 i~~l 403 (439)
T TIGR02472 400 LEDA 403 (439)
T ss_pred HHHH
Confidence 6553
No 385
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.11 E-value=1.2e+02 Score=24.39 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=24.9
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
..+|+||.. |+-.++++...+.|-.|+.+.
T Consensus 3 ~vlItGas~-giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATS-DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCc-HHHHHHHHHHHhcCCEEEEEe
Confidence 368999875 999999999998888887773
No 386
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.09 E-value=1.3e+02 Score=25.88 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCeEEEcCC
Q 029078 39 AIQLGKQLVERNIDLVYGGG 58 (199)
Q Consensus 39 A~~lG~~lA~~G~~lv~GGg 58 (199)
.+++++.|+++|+.|+..+-
T Consensus 27 G~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 27 GLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 45677778889999876553
No 387
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=23.03 E-value=6.2e+02 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCeEEEcC
Q 029078 39 AIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 39 A~~lG~~lA~~G~~lv~GG 57 (199)
+..|.+.|.+.|..-|+|=
T Consensus 2 ~~~l~~~L~~~Gv~~vFg~ 20 (539)
T TIGR02418 2 ADLVVDQLENQGVRYVFGI 20 (539)
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4568889999999999985
No 388
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=22.99 E-value=4.2e+02 Score=23.58 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=10.4
Q ss_pred hcCEEEEecCCc
Q 029078 114 QADAFIALPGGY 125 (199)
Q Consensus 114 ~sDa~IvlpGG~ 125 (199)
.+|.+|.++||.
T Consensus 81 ~~D~IIaiGGGS 92 (347)
T cd08184 81 LPCAIVGIGGGS 92 (347)
T ss_pred CCCEEEEeCCcH
Confidence 579999999984
No 389
>PRK07035 short chain dehydrogenase; Provisional
Probab=22.93 E-value=1.3e+02 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|-|.|+++ -....+.+.|+++|+.|+--+
T Consensus 9 k~vlItGas~--------gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASR--------GIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEEEe
Confidence 4677776553 134567777888898877544
No 390
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=22.90 E-value=4.4e+02 Score=26.25 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEe
Q 029078 35 YQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVI 81 (199)
Q Consensus 35 ~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~ 81 (199)
+...+.-+...++..||.+++|++. ---+.+++.|.+.+..+|++.
T Consensus 595 H~~ra~fv~~~l~~~GfeV~~~~~~-~s~e~~v~aa~~~~a~ivvlc 640 (714)
T PRK09426 595 HDRGAKVIATAFADLGFDVDIGPLF-QTPEEAARQAVENDVHVVGVS 640 (714)
T ss_pred hhHhHHHHHHHHHhCCeeEecCCCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 5455566677888899999988764 557889999999999999983
No 391
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.89 E-value=1.8e+02 Score=22.34 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 42 LGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 42 lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
|.+.+.+++..|.+||| -++..-++..+...|.+|-+
T Consensus 55 l~~l~~~~~~VIa~GGG--~~~~~~~~~~L~~~g~vI~L 91 (158)
T PF01202_consen 55 LRELLKENNCVIACGGG--IVLKEENRELLKENGLVIYL 91 (158)
T ss_dssp HHHHHCSSSEEEEE-TT--GGGSHHHHHHHHHHSEEEEE
T ss_pred HHHHhccCcEEEeCCCC--CcCcHHHHHHHHhCCEEEEE
Confidence 33344445777778876 46666677788888899888
No 392
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=22.88 E-value=1.3e+02 Score=24.16 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|-|.|+++ + ....+++.|+++|+.|+.-+
T Consensus 6 k~vlItGas~-g-------IG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 6 KVALVTGANT-G-------LGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEc
Confidence 4666665543 1 34566777777888776544
No 393
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=22.88 E-value=5e+02 Score=22.43 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred HHhhcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCC
Q 029078 12 AALKSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREIT 91 (199)
Q Consensus 12 ~~~~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~ 91 (199)
+......-++=|.+....--.+.+ ...+-.+.|.+.||.|.-=- -=.-..++.-.+.|..+ |+|-.. |...
T Consensus 87 e~~~t~wIKLEVi~D~~~L~PD~~--etl~Aae~Lv~eGF~VlPY~---~~D~v~akrL~d~Gcaa--vMPlgs-PIGS- 157 (247)
T PF05690_consen 87 EAFGTNWIKLEVIGDDKTLLPDPI--ETLKAAEILVKEGFVVLPYC---TDDPVLAKRLEDAGCAA--VMPLGS-PIGS- 157 (247)
T ss_dssp HTTS-SEEEE--BS-TTT--B-HH--HHHHHHHHHHHTT-EEEEEE----S-HHHHHHHHHTT-SE--BEEBSS-STTT-
T ss_pred HHcCCCeEEEEEeCCCCCcCCChh--HHHHHHHHHHHCCCEEeecC---CCCHHHHHHHHHCCCCE--EEeccc-cccc-
Confidence 334444456778866554322222 33566788899999997322 22456778888888764 444221 1110
Q ss_pred CCCCceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec
Q 029078 92 GDTVGEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 152 (199)
Q Consensus 92 ~~~~~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~ 152 (199)
...+. + ..-.+++++.+|.-|++-+|+||.++..+++. .+---+|+|+
T Consensus 158 g~Gi~------n-~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME------lG~daVLvNT 205 (247)
T PF05690_consen 158 GRGIQ------N-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME------LGADAVLVNT 205 (247)
T ss_dssp ---SS------T-HHHHHHHHHHGSSSBEEES---SHHHHHHHHH------TT-SEEEESH
T ss_pred CcCCC------C-HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH------cCCceeehhh
Confidence 11111 1 23356677889999999999999999999887 3555677775
No 394
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.87 E-value=1.7e+02 Score=23.84 Aligned_cols=27 Identities=7% Similarity=-0.145 Sum_probs=13.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Q 029078 21 VCVFCGSSPGKSPSYQLAAIQLGKQLVER 49 (199)
Q Consensus 21 I~V~ggs~~~~~~~~~~~A~~lG~~lA~~ 49 (199)
|+|.... ..++-+.+..+.+-+.+.+.
T Consensus 2 Ig~i~~~--~~~~~~~~~~~~i~~~~~~~ 28 (272)
T cd06300 2 IGLSNSY--AGNTWRAQMLDEFKAQAKEL 28 (272)
T ss_pred eEEeccc--cCChHHHHHHHHHHHHHHhh
Confidence 5555422 22445555555555556566
No 395
>PRK06180 short chain dehydrogenase; Provisional
Probab=22.65 E-value=1.2e+02 Score=25.18 Aligned_cols=32 Identities=16% Similarity=-0.078 Sum_probs=22.1
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
.++|.|.|+++ -..+.+.+.|+++|+.|+..+
T Consensus 4 ~~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 4 MKTWLITGVSS--------GFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CCEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEe
Confidence 35688887664 135667777888899877554
No 396
>PRK08617 acetolactate synthase; Reviewed
Probab=22.64 E-value=6.4e+02 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEEcC
Q 029078 38 AAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 38 ~A~~lG~~lA~~G~~lv~GG 57 (199)
-+..+.+.|.+.|..-|+|-
T Consensus 7 ~~~~l~~~L~~~GV~~vFg~ 26 (552)
T PRK08617 7 GADLVVDSLINQGVKYVFGI 26 (552)
T ss_pred HHHHHHHHHHHcCCCEEEeC
Confidence 46778899999999999985
No 397
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.64 E-value=2.2e+02 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=32.7
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCC-CCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGI-HDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~-~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
.+|.+|+ -||=||+-..+..+. +. .++|++=+|.+ ||. +++.+.++++.+..|
T Consensus 35 ~~Dlvi~-iGGDGT~L~a~~~~~----~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 35 NPDIVIS-VGGDGTLLSAFHRYE----NQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCCEEEE-ECCcHHHHHHHHHhc----ccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCc
Confidence 4565555 577899887654432 11 46788777765 555 346666777766554
No 398
>PLN02949 transferase, transferring glycosyl groups
Probab=22.62 E-value=3.1e+02 Score=25.48 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=29.6
Q ss_pred HHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 029078 109 AEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 159 (199)
Q Consensus 109 ~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l 159 (199)
..++..||++|.-+ -|+|.. +.|++. .++|++..+.+|-+.++
T Consensus 349 ~~ll~~a~~~v~~s~~E~FGiv--vlEAMA------~G~PVIa~~~gGp~~eI 393 (463)
T PLN02949 349 VRLLGGAVAGLHSMIDEHFGIS--VVEYMA------AGAVPIAHNSAGPKMDI 393 (463)
T ss_pred HHHHHhCcEEEeCCccCCCChH--HHHHHH------cCCcEEEeCCCCCccee
Confidence 33467889888533 677862 556665 68999999887765443
No 399
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=22.60 E-value=6.1e+02 Score=23.36 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=77.4
Q ss_pred cccceEEEEcCCCCC-CCHHHHHHHHHHHHHHHh---CCCeEEEcCCC-cChhHHHHHHHH-hc-CC----eEEEEeCCC
Q 029078 16 SRFKRVCVFCGSSPG-KSPSYQLAAIQLGKQLVE---RNIDLVYGGGS-IGLMGLVSQAVY-DG-GR----HVLGVIPKT 84 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~-~~~~~~~~A~~lG~~lA~---~G~~lv~GGg~-~GlM~a~a~gA~-~~-gg----~viGv~P~~ 84 (199)
+|..++-|--..... .+..| --||..+.+ .+..+++|... ...-..=+-+|- .. |+ ++.||+|+.
T Consensus 179 nR~~~~~v~v~~~~~~d~~~~----~~LG~~iG~~~~~~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa 254 (400)
T PF04412_consen 179 NRRATILVEVEAPPEEDDADW----GLLGYLIGKKVGDRIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEA 254 (400)
T ss_pred CCCCeEEEEeCCCCCcCcchH----HHHHHHHHHhcCCCcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCC
Confidence 344556555444332 23333 456776665 48999998764 233333333322 22 33 678999875
Q ss_pred CCCCCCCCCCCceeeec-CCH-HHHHHHH-HHhcCE-EEEecCCcCcHHHHHHHHHHHHcCC--CCCcEEEEecCCcchH
Q 029078 85 LMPREITGDTVGEVKAV-SGM-HQRKAEM-ARQADA-FIALPGGYGTLEELLEVITWAQLGI--HDKPVGLLNVDGYYNS 158 (199)
Q Consensus 85 ~~~~e~~~~~~~~~~~~-~~m-~~R~~~~-v~~sDa-~IvlpGG~GTl~Ei~~~~~~~~~~~--~~kPvvll~~~g~w~~ 158 (199)
....+.-......+.+. .++ ..++.+- -...+. +|+|+-=.=|++|+.++..+..-.. .++|+++.-....+..
T Consensus 255 ~~~~~a~~~~~e~i~i~~~dl~~~~~~l~~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~ 334 (400)
T PF04412_consen 255 PTLEAAFGGKAERITITDADLEEVYEELNTAGDEKVDLVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYEL 334 (400)
T ss_pred CcchhhhcCCceEEEeCHHHHHHHHHHhccCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHH
Confidence 42211111112223222 222 2222221 111233 7778777899999999887766544 4678888754334443
Q ss_pred HHH--HHHHHHHcC
Q 029078 159 LLS--FIDKAVDEG 170 (199)
Q Consensus 159 l~~--~l~~~~~~g 170 (199)
... +++.+.+.|
T Consensus 335 a~~~G~~~~le~~G 348 (400)
T PF04412_consen 335 AERMGYVERLEKAG 348 (400)
T ss_pred HHhCCHHHHHHHcC
Confidence 333 334444444
No 400
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.48 E-value=2.4e+02 Score=24.17 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHH-----HHHHHHHHcCC
Q 029078 127 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLL-----SFIDKAVDEGF 171 (199)
Q Consensus 127 Tl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~-----~~l~~~~~~g~ 171 (199)
|++++++.+.-..-...+.|++++. ||+++. +|++.+.+-|.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~vlm~---Y~N~i~~~G~e~f~~~~~~aGv 118 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIVLMT---YYNPIFQYGVERFAADAAEAGV 118 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEe---cccHHhhcCHHHHHHHHHHcCC
Confidence 4566666554333223567988773 777644 46676766553
No 401
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.38 E-value=1.9e+02 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCeEEEcCCC
Q 029078 38 AAIQLGKQLVERNIDLVYGGGS 59 (199)
Q Consensus 38 ~A~~lG~~lA~~G~~lv~GGg~ 59 (199)
.-+++++.+...|..+|.|+.+
T Consensus 204 ~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 204 EQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCC
Confidence 3467889999999999999987
No 402
>PRK06194 hypothetical protein; Provisional
Probab=22.28 E-value=4.5e+02 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|-|.|+++ + ....+.+.|+++|+.|+.-+
T Consensus 7 k~vlVtGasg-g-------IG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 7 KVAVITGAAS-G-------FGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CEEEEeCCcc-H-------HHHHHHHHHHHCCCEEEEEe
Confidence 5677887664 2 34567778888999886544
No 403
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=22.27 E-value=4e+02 Score=23.00 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=25.7
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcc
Q 029078 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYY 156 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w 156 (199)
...+...||+|+.-. .|+|- =+.|+++ +++||+..+..|..
T Consensus 267 ~~~~~~~ad~~v~~s~~Eg~g~--~~lEA~a------~G~Pvv~s~~~~~~ 309 (372)
T cd03792 267 VNALQRASTVVLQKSIREGFGL--TVTEALW------KGKPVIAGPVGGIP 309 (372)
T ss_pred HHHHHHhCeEEEeCCCccCCCH--HHHHHHH------cCCCEEEcCCCCch
Confidence 344678899986432 23442 3445565 78999987766544
No 404
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.19 E-value=3.3e+02 Score=20.14 Aligned_cols=51 Identities=14% Similarity=0.363 Sum_probs=27.5
Q ss_pred HHHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHH
Q 029078 111 MARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVD 168 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~ 168 (199)
+.+.+|++|=+. +.+.+...+.... .+++|+++ +++||-+.-++.++.+.+
T Consensus 64 ~~~~~DVvIDfT----~p~~~~~~~~~~~--~~g~~~Vi-GTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 64 LLEEADVVIDFT----NPDAVYDNLEYAL--KHGVPLVI-GTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HTTH-SEEEEES-----HHHHHHHHHHHH--HHT-EEEE-E-SSSHHHHHHHHHHHTT
T ss_pred hcccCCEEEEcC----ChHHhHHHHHHHH--hCCCCEEE-ECCCCCHHHHHHHHHHhc
Confidence 345599999988 3333333222111 25788876 677886666676766544
No 405
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=22.00 E-value=1.3e+02 Score=27.12 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=26.4
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEe
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN 151 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~ 151 (199)
.|+|||..| .-||+|....+.+..- .+||||+-+
T Consensus 106 ~~GiVVtHG-TDTme~tA~~Lsl~l~--~~kPVVlTG 139 (349)
T TIGR00520 106 YDGIVITHG-TDTLEETAYFLDLTVK--SDKPVVIVG 139 (349)
T ss_pred CCEEEEeCC-cccHHHHHHHHHHHcC--CCCCEEEEC
Confidence 578888775 7999999988775433 489999974
No 406
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=21.92 E-value=3.5e+02 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=25.7
Q ss_pred HHHHHHHhcCEEEEe--cCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCC
Q 029078 107 RKAEMARQADAFIAL--PGGYGTLEELLEVITWAQLGIHDKPVGLLNVDG 154 (199)
Q Consensus 107 R~~~~v~~sDa~Ivl--pGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g 154 (199)
-..-++..+|++|.- ..|+|. =+.|+++ .++||+.-+.+|
T Consensus 262 ~~~~~l~~ad~~v~pS~~E~~g~--~~~EAma------~G~PVI~s~~gg 303 (398)
T cd03796 262 RVRDVLVQGHIFLNTSLTEAFCI--AIVEAAS------CGLLVVSTRVGG 303 (398)
T ss_pred HHHHHHHhCCEEEeCChhhccCH--HHHHHHH------cCCCEEECCCCC
Confidence 344467889988753 244552 3556665 789998876654
No 407
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.82 E-value=5.4e+02 Score=22.47 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=65.4
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCC
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKTLMPREITGDTV 95 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~~~~~~e~~~~~~ 95 (199)
...-++=|.+....--.+.+ ...+-.+.|++.||.|.-= .-=.=.+++.-.+.|.. -|+|-.. |... ...+
T Consensus 105 ~~wIKLEVi~D~~~LlPD~~--etl~Aae~Lv~eGF~VlPY---~~~D~v~a~rLed~Gc~--aVMPlgs-PIGS-g~Gl 175 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPDPI--GTLKAAEFLVKKGFTVLPY---INADPMLAKHLEDIGCA--TVMPLGS-PIGS-GQGL 175 (267)
T ss_pred CCeEEEEEeCCCcccCCChH--HHHHHHHHHHHCCCEEeec---CCCCHHHHHHHHHcCCe--EEeeccC-cccC-CCCC
Confidence 34456778866554433222 2356677888999998722 23345677778888866 3455321 1110 1111
Q ss_pred ceeeecCCHHHHHHHHHHhcCEEEEecCCcCcHHHHHHHHH
Q 029078 96 GEVKAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVIT 136 (199)
Q Consensus 96 ~~~~~~~~m~~R~~~~v~~sDa~IvlpGG~GTl~Ei~~~~~ 136 (199)
. + ..--+++++.++.-|++.+|+||-+....++.
T Consensus 176 ~------n-~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 176 Q------N-LLNLQIIIENAKIPVIIDAGIGTPSEASQAME 209 (267)
T ss_pred C------C-HHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH
Confidence 0 0 23356778889999999999999999988875
No 408
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=21.80 E-value=48 Score=23.27 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=16.6
Q ss_pred hcCEEEEecCCcCcHHHHHH
Q 029078 114 QADAFIALPGGYGTLEELLE 133 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~ 133 (199)
.+.+.|=++||+-||+|+..
T Consensus 45 ~~~vMVRVGGGW~tL~~~L~ 64 (73)
T PF02187_consen 45 RSHVMVRVGGGWDTLEEYLD 64 (73)
T ss_dssp TTEEEEEETTEEEEHHHHHH
T ss_pred CCEEEEEeCCcHHHHHHHhh
Confidence 35677889999999999874
No 409
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.61 E-value=4.7e+02 Score=21.61 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.4
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
.+.|.|.|+++ -....+.+.|+++|+.|+...
T Consensus 10 ~~~vlVtGa~g--------~iG~~la~~L~~~G~~V~~~~ 41 (274)
T PRK07775 10 RRPALVAGASS--------GIGAATAIELAAAGFPVALGA 41 (274)
T ss_pred CCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEe
Confidence 35788887654 135678888889999886544
No 410
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=21.58 E-value=3.2e+02 Score=24.81 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=21.5
Q ss_pred CeEEEcCCCcChhHHHHHHHHhcCCeEEEEeCC
Q 029078 51 IDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPK 83 (199)
Q Consensus 51 ~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P~ 83 (199)
-.+|+||.. -|-+++.+.........|+|+.+
T Consensus 53 ~DvVFGGee-KL~eaI~ea~e~y~P~lI~VvTT 84 (352)
T TIGR03282 53 NDFVFGASE-KLVKVIRYAEEKFKPELIGVVGT 84 (352)
T ss_pred CceEeCcHH-HHHHHHHHHHHhcCCCEEEEECC
Confidence 356778764 77777766666667777887643
No 411
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.56 E-value=2.8e+02 Score=25.13 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=34.9
Q ss_pred EEEcCCCCCC--CHHHHHHHHHHHHHHHhCCCe-EEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 22 CVFCGSSPGK--SPSYQLAAIQLGKQLVERNID-LVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 22 ~V~ggs~~~~--~~~~~~~A~~lG~~lA~~G~~-lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
++.++||... .++.++ ...+.|.+.|.. ||+=||. |-+..+..=+-+.+-.+|||
T Consensus 67 T~lgssR~~~~~~~e~~~---~~~~~l~~~gId~LvvIGGD-gS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 67 TFLGSARFPEFKTEEGRK---VAAENLKKLGIDALVVIGGD-GSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred eEEeeCCCCCcccHHHHH---HHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHhcCCcEEec
Confidence 4566666653 234433 555666666553 2334554 88888888777777889998
No 412
>PRK08105 flavodoxin; Provisional
Probab=21.48 E-value=2.1e+02 Score=22.13 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.0
Q ss_pred hhHHHHHHHHhcCCeEEE
Q 029078 62 LMGLVSQAVYDGGRHVLG 79 (199)
Q Consensus 62 lM~a~a~gA~~~gg~viG 79 (199)
.+..+.+-..+.|+..++
T Consensus 103 ~~~~ld~~l~~lGa~~v~ 120 (149)
T PRK08105 103 AGKQFDALLQEQGAKRVG 120 (149)
T ss_pred HHHHHHHHHHHCCCeEee
Confidence 344444444457777766
No 413
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=21.39 E-value=5.2e+02 Score=22.97 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=18.7
Q ss_pred CEEEEecCCcCcHHHHHHHHHH
Q 029078 116 DAFIALPGGYGTLEELLEVITW 137 (199)
Q Consensus 116 Da~IvlpGG~GTl~Ei~~~~~~ 137 (199)
-..|.+|--.|.|.++...+..
T Consensus 307 ~l~v~l~D~pG~L~~v~~~i~~ 328 (380)
T TIGR01127 307 RIETVLPDRPGALYHLLESIAE 328 (380)
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 4688999999999999988763
No 414
>PRK12361 hypothetical protein; Provisional
Probab=21.35 E-value=1.1e+02 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEE
Q 029078 118 FIALPGGYGTLEELLEVITWAQLGIHDKPVGLL 150 (199)
Q Consensus 118 ~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll 150 (199)
.|+.-||=||++|+...+. .++.|+.++
T Consensus 300 ~Viv~GGDGTl~ev~~~l~-----~~~~~lgii 327 (547)
T PRK12361 300 IVIACGGDGTVTEVASELV-----NTDITLGII 327 (547)
T ss_pred EEEEECCCcHHHHHHHHHh-----cCCCCEEEe
Confidence 5667899999999997664 134677776
No 415
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.33 E-value=2e+02 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=23.5
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|++|+|+ + .-+.... -.|..|+..||+.|+.++
T Consensus 1 m~~iav~-~-KGGvGKT--T~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGKS--TTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCHH--HHHHHHHHHHHhCCCeEE
Confidence 5678888 4 4444433 357889999999998664
No 416
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.29 E-value=4e+02 Score=21.49 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCCCcCh
Q 029078 33 PSYQLAAIQLGKQLVERNIDLVYGGGSIGL 62 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~~G~~lv~GGg~~Gl 62 (199)
+...+.++.+.+.+.+.+...++|-|..+.
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 556667777777777779999999876443
No 417
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.27 E-value=1.5e+02 Score=23.72 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=16.9
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++-|.|+++. ....+++.++++|+.++.-.
T Consensus 7 ~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 7 VIVITGGAQG--------LGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred EEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 5666655431 23456666677777765433
No 418
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.20 E-value=2.2e+02 Score=21.61 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 029078 20 RVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDL 53 (199)
Q Consensus 20 ~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~l 53 (199)
++++.--+. +.++.....|.++++.++..|+.+
T Consensus 2 ~~~iv~~~~-Py~~~~~~~al~~A~aa~~~gh~v 34 (128)
T PRK00207 2 RYAIAVTGP-AYGTQQASSAYQFAQALLAEGHEL 34 (128)
T ss_pred EEEEEEcCC-CCCCHHHHHHHHHHHHHHhCCCCe
Confidence 355553333 445666789999999999999874
No 419
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.12 E-value=2e+02 Score=25.23 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=33.8
Q ss_pred hcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC--Ccc-----hHHHHHHHHHHHcCC
Q 029078 114 QADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD--GYY-----NSLLSFIDKAVDEGF 171 (199)
Q Consensus 114 ~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~--g~w-----~~l~~~l~~~~~~g~ 171 (199)
.+|.+|++ ||=||+-..+..+. ...+||+=+|.+ ||. +.+.+.++++.+..|
T Consensus 68 ~~D~vi~l-GGDGT~L~aa~~~~-----~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 68 YCDLVAVL-GGDGTFLSVAREIA-----PRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred CCCEEEEE-CCcHHHHHHHHHhc-----ccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCc
Confidence 56766655 77899887765432 346898877765 454 346666777766554
No 420
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=21.02 E-value=91 Score=26.52 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHHhcCEEEEecCCcCcHHHHH--HHHHHHH-cCCCCCcEEEEecCCc
Q 029078 111 MARQADAFIALPGGYGTLEELL--EVITWAQ-LGIHDKPVGLLNVDGY 155 (199)
Q Consensus 111 ~v~~sDa~IvlpGG~GTl~Ei~--~~~~~~~-~~~~~kPvvll~~~g~ 155 (199)
++..+|++++ +.||+.+-. .+....+ ...+++|+| +++.+.
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvV-lDpv~~ 94 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVV-LDPVGV 94 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEE-ECCccc
Confidence 3578899988 555554432 2222222 223578975 577664
No 421
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=20.90 E-value=1.4e+02 Score=26.13 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 49 RNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 49 ~G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
....||-||-+++=-.-..+=|.+.|-++.-|
T Consensus 209 vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~I 240 (280)
T TIGR00216 209 VDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLI 240 (280)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHhCCCEEEE
Confidence 57777777766555555555566666555554
No 422
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.90 E-value=3.6e+02 Score=22.36 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCeE--EEcCCCcChhHHHHHHHHhcCCeEEEE
Q 029078 37 LAAIQLGKQLVERNIDL--VYGGGSIGLMGLVSQAVYDGGRHVLGV 80 (199)
Q Consensus 37 ~~A~~lG~~lA~~G~~l--v~GGg~~GlM~a~a~gA~~~gg~viGv 80 (199)
+.|.++.+.|.+.|+.+ ||=-.+ +..+++.+-..+.....||.
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~tp-~a~~~I~~l~~~~~~~~vGA 60 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLRTP-AALDAIRAVAAEVEEAIVGA 60 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEee
Confidence 45677778888877776 232334 66666666555555566776
No 423
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.80 E-value=5.1e+02 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=33.7
Q ss_pred CCCcEEEEecCC--cchHHHHHHHHHHHcCCCCcccccceEEcCCHHHHHHHHHhh
Q 029078 143 HDKPVGLLNVDG--YYNSLLSFIDKAVDEGFIAPAARYIIVSAQTAHELICKLESK 196 (199)
Q Consensus 143 ~~kPvvll~~~g--~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d~ee~~~~l~~~ 196 (199)
.+.||+..++-. -++.+.+.+..+.+.|.-.-.....++-.+||.++++.+.+.
T Consensus 191 ~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~ 246 (258)
T TIGR01949 191 CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKI 246 (258)
T ss_pred CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHH
Confidence 357887764322 245555556666666654333445567778899988888753
No 424
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=20.78 E-value=7.1e+02 Score=23.45 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=13.6
Q ss_pred HHHHhcCEEEEecCCcC
Q 029078 110 EMARQADAFIALPGGYG 126 (199)
Q Consensus 110 ~~v~~sDa~IvlpGG~G 126 (199)
..++.||.+|+++..+.
T Consensus 261 ~~~~~aDlvl~lG~~~~ 277 (574)
T PRK09124 261 HAMMNCDTLLMLGTDFP 277 (574)
T ss_pred HHHHhCCEEEEECCCCC
Confidence 45679999999997654
No 425
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=20.76 E-value=3e+02 Score=20.84 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHh----CCCeE-EE--cCC-CcChhHHHHHHHHhcC
Q 029078 37 LAAIQLGKQLVE----RNIDL-VY--GGG-SIGLMGLVSQAVYDGG 74 (199)
Q Consensus 37 ~~A~~lG~~lA~----~G~~l-v~--GGg-~~GlM~a~a~gA~~~g 74 (199)
+.|+.+|+.||+ .|+.= ++ ||. +.|-+.|++++|.++|
T Consensus 69 ~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~G 114 (117)
T PRK05593 69 EAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAG 114 (117)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhC
Confidence 457888888876 45433 22 432 2688999999999987
No 426
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=20.75 E-value=7.2e+02 Score=23.49 Aligned_cols=79 Identities=6% Similarity=-0.050 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCC-CeEEEcCCCc--ChhHHHHHHHHhcCCeEEEEeCCCC--CCCCCCCCCCceeeecCCHHHHHHHHH
Q 029078 38 AAIQLGKQLVERN-IDLVYGGGSI--GLMGLVSQAVYDGGRHVLGVIPKTL--MPREITGDTVGEVKAVSGMHQRKAEMA 112 (199)
Q Consensus 38 ~A~~lG~~lA~~G-~~lv~GGg~~--GlM~a~a~gA~~~gg~viGv~P~~~--~~~e~~~~~~~~~~~~~~m~~R~~~~v 112 (199)
...++.+.|++.. -.++.|+|-. +.-+++.+=|-..|-.|+- .|... .|.+ ++.+.-. . ...++
T Consensus 209 ~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~~~~~--hp~~~G~------~--~~~~~ 277 (569)
T PRK08327 209 DIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVE-YAGEVVNYPSD--HPLHLGP------D--PRADL 277 (569)
T ss_pred HHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEe-cCCCceeCCCC--Ccccccc------c--cchhh
Confidence 3456667777644 4455565532 4455666666666766552 22211 1111 1111100 0 22335
Q ss_pred HhcCEEEEecCCcCc
Q 029078 113 RQADAFIALPGGYGT 127 (199)
Q Consensus 113 ~~sDa~IvlpGG~GT 127 (199)
+.||.+|+++.-.+.
T Consensus 278 ~~aDlvl~lG~~l~~ 292 (569)
T PRK08327 278 AEADLVLVVDSDVPW 292 (569)
T ss_pred hhCCEEEEeCCCCCC
Confidence 789999999976554
No 427
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=20.72 E-value=62 Score=29.67 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=12.0
Q ss_pred eEEEcCCCcChhHHHHH
Q 029078 52 DLVYGGGSIGLMGLVSQ 68 (199)
Q Consensus 52 ~lv~GGg~~GlM~a~a~ 68 (199)
.+|-|||+.|+|-|...
T Consensus 3 viIIGgGaAGl~aA~~a 19 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA 19 (409)
T ss_dssp EEEE--SHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHH
Confidence 35779999999988765
No 428
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.67 E-value=1.8e+02 Score=24.15 Aligned_cols=32 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred hcccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 15 KSRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 15 ~~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
++..++|-|.|+++ -....+++.|+++|+.|+
T Consensus 1 m~~~k~vlItGasg--------giG~~la~~l~~~G~~Vi 32 (277)
T PRK05993 1 MDMKRSILITGCSS--------GIGAYCARALQSDGWRVF 32 (277)
T ss_pred CCCCCEEEEeCCCc--------HHHHHHHHHHHHCCCEEE
No 429
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=20.60 E-value=4.2e+02 Score=23.96 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHh-----CCCeEEE--cCCC-cChhHHHHHHHHh----cCCeEEEEeCCC
Q 029078 33 PSYQLAAIQLGKQLVE-----RNIDLVY--GGGS-IGLMGLVSQAVYD----GGRHVLGVIPKT 84 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~-----~G~~lv~--GGg~-~GlM~a~a~gA~~----~gg~viGv~P~~ 84 (199)
+++.+...+.-+..++ .|+.++. |||. .|+--.+.+...+ ..-.++.|.|..
T Consensus 79 ~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~ 142 (379)
T cd02190 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSA 142 (379)
T ss_pred hhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCC
Confidence 4555555555555555 3667754 4443 3555555555554 234556777754
No 430
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=20.57 E-value=1.5e+02 Score=27.56 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=26.7
Q ss_pred cCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchH
Q 029078 115 ADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 158 (199)
Q Consensus 115 sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~ 158 (199)
.+++|++-|| +|..|+..+..+.+....++.|++ +++....+
T Consensus 516 ~~viVf~vGG-vTy~Ei~~l~~l~~~~~~~~~iii-gsT~il~~ 557 (564)
T PF00995_consen 516 KRVIVFFVGG-VTYSEIRALRELSKKLGPGKEIII-GSTSILNP 557 (564)
T ss_dssp SEEEEEEETE-BEHHHHHHHHHHHTTSSSSSEEEE-EESSBE-H
T ss_pred CEEEEEEEcC-CcHHHHHHHHHHHHhhCCCcEEEE-EeCCccCH
Confidence 5578888888 799999987766554222256655 45555544
No 431
>PRK11096 ansB L-asparaginase II; Provisional
Probab=20.57 E-value=1.4e+02 Score=26.90 Aligned_cols=50 Identities=24% Similarity=0.338 Sum_probs=34.3
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEec-----CCcchHHHHHHHH
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV-----DGYYNSLLSFIDK 165 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~-----~g~w~~l~~~l~~ 165 (199)
...|+|||..| .-||+|....+.+. +. .+||||+.+. .-..|...++.+.
T Consensus 99 ~~~dGiVVtHG-TDTme~tA~~Ls~~-~~-~~kPVVlTGAmrP~~~~~sDg~~NL~~A 153 (347)
T PRK11096 99 DKTDGFVITHG-TDTMEETAYFLDLT-VK-CDKPVVLVGAMRPSTAMSADGPLNLYNA 153 (347)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHh-cc-CCCCEEEeCCCCCCCCcCCchHHHHHHH
Confidence 44778888765 89999999988764 33 4799999753 1244555555443
No 432
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.56 E-value=2.5e+02 Score=25.48 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCeEEEcCCC---cChhHHHHHHHHhcCC-eEEEEeCC
Q 029078 29 PGKSPSYQLAAIQLGKQLVERNIDLVYGGGS---IGLMGLVSQAVYDGGR-HVLGVIPK 83 (199)
Q Consensus 29 ~~~~~~~~~~A~~lG~~lA~~G~~lv~GGg~---~GlM~a~a~gA~~~gg-~viGv~P~ 83 (199)
.+.++.+.+.-+.+-..++++|..||+++|. .|+.+++.+-|.+.|= .-|+++..
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~g 108 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYG 108 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEEC
Confidence 3456777777888889999999999998773 2334444455555553 34666543
No 433
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=20.43 E-value=1.1e+02 Score=24.06 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCCCcChhHHHHHHHHh---cCC---eEEEEeCCC
Q 029078 33 PSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYD---GGR---HVLGVIPKT 84 (199)
Q Consensus 33 ~~~~~~A~~lG~~lA~~G~~lv~GGg~~GlM~a~a~gA~~---~gg---~viGv~P~~ 84 (199)
+.+.+.|++|+.+|+. ...|+||+ +++.+++.-.+. -+. -..+++|+.
T Consensus 2 e~~~n~Ak~LA~~L~~-~~Pvi~~~---~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~ 55 (155)
T PF10432_consen 2 ESFVNPAKRLALELAG-RIPVIYGS---PLYAAVARRWKQQLNENAKYPAFAAVLPEA 55 (155)
T ss_dssp --GHHHHHHHHHHHTT-SEEEEEEC---GCGCHHHHHHHHHHHHTT----EEEEETCH
T ss_pred ccccCHHHHHHHHHcC-CCcEEEEC---ccchHHHHHHHHHHHHHhCCccchhcchhh
Confidence 3456788999999987 68899997 467777665543 233 245667764
No 434
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.41 E-value=3.4e+02 Score=21.40 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHH
Q 029078 112 ARQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSL 159 (199)
Q Consensus 112 v~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l 159 (199)
+..+|.-|.+-|-.||==|++.-+-........+|.+.+|...+-+..
T Consensus 18 ~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~ 65 (168)
T PF00158_consen 18 AASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEEL 65 (168)
T ss_dssp HTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHH
T ss_pred HhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcch
Confidence 456889999999999988887554433333457899999998776553
No 435
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=20.37 E-value=4.9e+02 Score=21.42 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=36.7
Q ss_pred HHHHHHhcCEEEEec--CCcCcHHHHHHHHHHHHcCCCCCcEEEEecCCcchHHHHHHHHHHHcCCCCcccccceEEcCC
Q 029078 108 KAEMARQADAFIALP--GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVDEGFIAPAARYIIVSAQT 185 (199)
Q Consensus 108 ~~~~v~~sDa~Ivlp--GG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~g~w~~l~~~l~~~~~~g~i~~~~~~~i~~~~d 185 (199)
...++..||++|.-. .|+|. =++|++. .++||+..+..++-+-+ + ....++..+|
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~--~~~Ea~a------~G~pvI~~~~~~~~e~~--------~-------~~~~~~~~~~ 322 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGL--PVLEAMA------CGTPVIASNISSLPEVA--------G-------DAALYFDPLD 322 (365)
T ss_pred HHHHHhhhhhhcccchhccCCC--CHHHHhc------CCCcEEecCCCCcccee--------c-------CceeeeCCCC
Confidence 344567788665432 22232 1455555 68999987665432211 1 1223455567
Q ss_pred HHHHHHHHHhh
Q 029078 186 AHELICKLESK 196 (199)
Q Consensus 186 ~ee~~~~l~~~ 196 (199)
++++.+.|.+.
T Consensus 323 ~~~~~~~i~~l 333 (365)
T cd03809 323 PEALAAAIERL 333 (365)
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 436
>PRK08339 short chain dehydrogenase; Provisional
Probab=20.30 E-value=1.6e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
+++-|.|+++ + ..+.+++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~-g-------IG~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 9 KLAFTTASSK-G-------IGFGVARVLARAGADVILLS 39 (263)
T ss_pred CEEEEeCCCC-c-------HHHHHHHHHHHCCCEEEEEe
Confidence 3556665543 2 34567777888888876544
No 437
>PRK06696 uridine kinase; Validated
Probab=20.24 E-value=3.2e+02 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=26.8
Q ss_pred cccceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q 029078 16 SRFKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVY 55 (199)
Q Consensus 16 ~~~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~ 55 (199)
.+...|+|-|+|..|... .|.+|.+.|...|..++.
T Consensus 20 ~~~~iI~I~G~sgsGKST----lA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTT----FADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHH----HHHHHHHHHHHcCCeEEE
Confidence 345689999998887543 567788888777877765
No 438
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=20.18 E-value=1.2e+02 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=21.3
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCCeEEEEeC
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIP 82 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg~viGv~P 82 (199)
...+|+|+|..|+ ++..-|+..|..++.+..
T Consensus 167 ~~VlV~G~g~iG~--~a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAH--LTAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHH--HHHHHHHHCCCeEEEEeC
Confidence 4667888765554 455678888888888754
No 439
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=20.13 E-value=6.7e+02 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=24.5
Q ss_pred HhcCEEEEecCCcCcHHHHHHHHHHHHcCCCCCcEEEEecC
Q 029078 113 RQADAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVD 153 (199)
Q Consensus 113 ~~sDa~IvlpGG~GTl~Ei~~~~~~~~~~~~~kPvvll~~~ 153 (199)
+..|++|+.-.-+||-..+...+. ..++|++++...
T Consensus 62 ~~~d~ii~~~~tf~~~~~~~~~~~-----~~~~Pvll~a~~ 97 (452)
T cd00578 62 ANCDGLIVWMHTFGPAKMWIAGLS-----ELRKPVLLLATQ 97 (452)
T ss_pred cCCcEEEEcccccccHHHHHHHHH-----hcCCCEEEEeCC
Confidence 357888888888888665555432 247899888543
No 440
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.08 E-value=1.5e+02 Score=23.90 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
++|-|.|+++ -....+.+.|+++|+.++...
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEe
Confidence 4678887664 135667788888999987554
No 441
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=20.04 E-value=5.9e+02 Score=22.19 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=14.8
Q ss_pred eEEcCCHHHHHHHHHhh
Q 029078 180 IVSAQTAHELICKLESK 196 (199)
Q Consensus 180 i~~~~d~ee~~~~l~~~ 196 (199)
+..++|++|+++.|++.
T Consensus 269 vi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 269 VTVVKSPSDIGELLAEI 285 (286)
T ss_pred CeEeCCHHHHHHHHHHh
Confidence 67889999999999864
No 442
>PRK10037 cell division protein; Provisional
Probab=20.01 E-value=2.2e+02 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=23.2
Q ss_pred cceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q 029078 18 FKRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLV 54 (199)
Q Consensus 18 ~~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv 54 (199)
|+.|+|+ +..-+.... -.|..|+..||++|+.|+
T Consensus 1 ~~~iav~-n~KGGvGKT--T~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 1 MAILGLQ-GVRGGVGTT--SITAALAWSLQMLGENVL 34 (250)
T ss_pred CcEEEEe-cCCCCccHH--HHHHHHHHHHHhcCCcEE
Confidence 4577877 344444443 357889999999998663
No 443
>PLN02740 Alcohol dehydrogenase-like
Probab=20.01 E-value=2.1e+02 Score=25.26 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=20.1
Q ss_pred CCeEEEcCCCcChhHHHHHHHHhcCC-eEEEEeC
Q 029078 50 NIDLVYGGGSIGLMGLVSQAVYDGGR-HVLGVIP 82 (199)
Q Consensus 50 G~~lv~GGg~~GlM~a~a~gA~~~gg-~viGv~P 82 (199)
...+|+|+|+.|++ +..-|+..|. .|+.+..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDI 231 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcC
Confidence 45678887655544 4556777787 5888743
No 444
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.01 E-value=1.6e+02 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEcC
Q 029078 19 KRVCVFCGSSPGKSPSYQLAAIQLGKQLVERNIDLVYGG 57 (199)
Q Consensus 19 ~~I~V~ggs~~~~~~~~~~~A~~lG~~lA~~G~~lv~GG 57 (199)
+++-|.|+++ + ..+++++.++++|+.|+.-+
T Consensus 9 k~~lItGas~-g-------iG~~ia~~l~~~G~~V~~~~ 39 (265)
T PRK07062 9 RVAVVTGGSS-G-------IGLATVELLLEAGASVAICG 39 (265)
T ss_pred CEEEEeCCCc-h-------HHHHHHHHHHHCCCeEEEEe
Confidence 4667776554 2 34567788888999877544
No 445
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=20.00 E-value=2.2e+02 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEc
Q 029078 32 SPSYQLAAIQLGKQLVERNIDLVYG 56 (199)
Q Consensus 32 ~~~~~~~A~~lG~~lA~~G~~lv~G 56 (199)
++-+.+..+.+-+.+.++|+.+++.
T Consensus 11 ~~~~~~~~~~~~~~a~~~g~~~~~~ 35 (273)
T cd06309 11 SPWRTAETKSIKDAAEKRGFDLKFA 35 (273)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 5566666666777777777777654
Done!