Query 029081
Match_columns 199
No_of_seqs 129 out of 362
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 7.9E-57 1.7E-61 372.0 24.1 184 1-197 1-184 (220)
2 PF01991 vATP-synt_E: ATP synt 99.9 3.4E-25 7.4E-30 181.9 13.8 168 16-197 1-168 (198)
3 PRK03963 V-type ATP synthase s 99.9 5.2E-22 1.1E-26 164.6 23.8 164 10-197 4-167 (198)
4 PRK01194 V-type ATP synthase s 99.9 7.4E-22 1.6E-26 163.6 20.3 129 10-144 3-135 (185)
5 COG1390 NtpE Archaeal/vacuolar 99.9 1.1E-20 2.3E-25 157.9 21.7 138 9-148 3-140 (194)
6 PRK02292 V-type ATP synthase s 99.8 1.2E-18 2.7E-23 143.6 20.7 130 10-149 3-136 (188)
7 PRK01558 V-type ATP synthase s 99.6 5.4E-13 1.2E-17 111.6 22.8 165 3-197 2-166 (198)
8 PRK01005 V-type ATP synthase s 99.1 4.2E-08 9.2E-13 82.9 20.4 115 3-125 7-122 (207)
9 TIGR02499 HrpE_YscL_not type I 98.8 1.2E-06 2.6E-11 70.1 18.4 145 13-198 14-160 (166)
10 PRK06937 type III secretion sy 98.8 1.1E-06 2.4E-11 73.6 18.4 146 15-198 33-181 (204)
11 PRK09098 type III secretion sy 98.7 1.2E-05 2.6E-10 69.1 22.6 152 6-198 44-201 (233)
12 TIGR03825 FliH_bacil flagellar 98.7 2.1E-05 4.6E-10 68.1 23.5 90 84-198 134-226 (255)
13 PRK06328 type III secretion sy 98.5 2.2E-05 4.8E-10 67.0 19.3 148 16-198 33-182 (223)
14 PRK06669 fliH flagellar assemb 98.5 7.6E-05 1.7E-09 65.3 23.0 93 83-198 163-256 (281)
15 PF06188 HrpE: HrpE/YscL/FliH 98.5 3.2E-05 6.9E-10 64.6 19.0 120 14-148 32-151 (191)
16 COG1317 FliH Flagellar biosynt 98.3 0.00032 7E-09 60.3 21.5 162 3-198 39-206 (234)
17 TIGR03321 alt_F1F0_F0_B altern 97.8 0.0092 2E-07 51.4 20.6 149 15-198 63-227 (246)
18 PF06635 NolV: Nodulation prot 97.7 0.0077 1.7E-07 51.0 18.4 136 17-174 35-171 (207)
19 PRK08475 F0F1 ATP synthase sub 97.5 0.0031 6.8E-08 51.4 13.0 89 11-115 76-164 (167)
20 PRK13386 fliH flagellar assemb 97.4 0.018 4E-07 49.5 16.5 85 84-198 120-207 (236)
21 PF02108 FliH: Flagellar assem 97.3 0.021 4.5E-07 43.2 14.1 88 83-198 24-114 (128)
22 PRK05687 fliH flagellar assemb 97.1 0.078 1.7E-06 45.4 17.0 88 84-198 133-222 (246)
23 PRK06032 fliH flagellar assemb 96.2 0.6 1.3E-05 39.0 19.3 83 84-174 85-169 (199)
24 PRK01194 V-type ATP synthase s 95.4 0.44 9.6E-06 39.5 12.1 59 7-65 11-69 (185)
25 PRK14474 F0F1 ATP synthase sub 95.3 1.7 3.8E-05 37.6 20.2 90 17-118 65-154 (250)
26 PRK03963 V-type ATP synthase s 94.9 1.8 3.9E-05 35.6 15.4 97 5-101 10-118 (198)
27 CHL00019 atpF ATP synthase CF0 94.6 2.1 4.5E-05 35.1 16.4 93 15-119 82-174 (184)
28 PRK08404 V-type ATP synthase s 94.4 1.4 3.1E-05 33.2 11.6 35 16-50 17-51 (103)
29 TIGR03825 FliH_bacil flagellar 94.3 3 6.6E-05 36.0 14.9 27 12-38 40-66 (255)
30 PRK13428 F0F1 ATP synthase sub 94.0 3.9 8.4E-05 38.4 16.0 104 14-129 58-161 (445)
31 PRK07352 F0F1 ATP synthase sub 94.0 2.8 6.1E-05 34.0 15.9 92 15-118 77-168 (174)
32 PRK01558 V-type ATP synthase s 93.3 4.3 9.3E-05 33.9 13.8 43 6-52 16-58 (198)
33 PRK06231 F0F1 ATP synthase sub 93.2 4.6 0.0001 34.0 15.9 93 14-118 105-197 (205)
34 PRK14473 F0F1 ATP synthase sub 92.6 4.5 9.7E-05 32.4 15.8 93 14-118 65-157 (164)
35 PRK13460 F0F1 ATP synthase sub 91.7 6.2 0.00013 32.0 15.8 92 15-118 74-165 (173)
36 PRK01005 V-type ATP synthase s 91.0 8.8 0.00019 32.5 18.6 57 7-67 22-78 (207)
37 PRK00106 hypothetical protein; 90.9 13 0.00028 35.9 15.4 42 80-121 139-182 (535)
38 PRK14471 F0F1 ATP synthase sub 90.4 7.9 0.00017 31.0 15.9 37 13-49 64-100 (164)
39 PF03179 V-ATPase_G: Vacuolar 90.1 6.2 0.00013 29.3 11.5 89 20-120 11-99 (105)
40 PRK08404 V-type ATP synthase s 89.7 7.1 0.00015 29.4 13.7 71 19-97 9-79 (103)
41 PRK02292 V-type ATP synthase s 89.5 10 0.00022 30.9 14.2 88 9-96 13-112 (188)
42 CHL00118 atpG ATP synthase CF0 89.4 9.5 0.00021 30.4 11.4 39 14-52 79-117 (156)
43 COG1390 NtpE Archaeal/vacuolar 89.2 12 0.00026 31.3 16.0 154 20-198 3-163 (194)
44 PRK14472 F0F1 ATP synthase sub 89.2 11 0.00023 30.6 15.9 39 15-53 76-114 (175)
45 PRK13455 F0F1 ATP synthase sub 89.2 11 0.00024 30.8 14.6 27 18-44 88-114 (184)
46 TIGR02926 AhaH ATP synthase ar 89.1 6.6 0.00014 28.2 9.9 24 72-95 50-73 (85)
47 PRK05759 F0F1 ATP synthase sub 88.8 10 0.00022 29.9 15.7 93 14-118 61-153 (156)
48 PRK07353 F0F1 ATP synthase sub 87.7 11 0.00024 29.1 11.4 63 15-96 63-125 (140)
49 PF01991 vATP-synt_E: ATP synt 87.6 13 0.00029 29.9 13.5 10 28-37 2-11 (198)
50 PRK13461 F0F1 ATP synthase sub 87.1 14 0.00029 29.4 15.7 93 15-119 63-155 (159)
51 PRK15354 type III secretion sy 86.9 19 0.00041 30.9 17.8 120 15-146 44-171 (224)
52 COG2811 NtpF Archaeal/vacuolar 86.9 12 0.00026 28.7 13.3 39 15-53 31-69 (108)
53 TIGR02926 AhaH ATP synthase ar 86.4 10 0.00022 27.3 11.9 38 16-53 24-61 (85)
54 TIGR01144 ATP_synt_b ATP synth 86.0 14 0.00031 28.7 15.5 39 14-52 52-90 (147)
55 PRK09174 F0F1 ATP synthase sub 85.7 20 0.00044 30.1 13.4 22 16-37 112-133 (204)
56 PF00430 ATP-synt_B: ATP synth 85.3 11 0.00024 28.4 9.1 63 15-96 57-119 (132)
57 PRK12704 phosphodiesterase; Pr 85.2 37 0.00079 32.7 16.8 25 80-104 124-148 (520)
58 PRK14475 F0F1 ATP synthase sub 85.1 18 0.0004 29.1 13.8 28 17-44 70-97 (167)
59 TIGR03319 YmdA_YtgF conserved 84.5 39 0.00085 32.4 16.3 11 143-153 185-195 (514)
60 PRK13454 F0F1 ATP synthase sub 83.6 23 0.0005 29.0 11.4 30 15-44 89-118 (181)
61 PRK09173 F0F1 ATP synthase sub 83.2 21 0.00046 28.3 14.6 23 72-94 98-120 (159)
62 PRK13460 F0F1 ATP synthase sub 82.1 25 0.00054 28.4 13.5 53 42-98 86-138 (173)
63 PRK13453 F0F1 ATP synthase sub 80.9 28 0.00061 28.2 15.7 39 15-53 76-114 (173)
64 COG0711 AtpF F0F1-type ATP syn 80.6 28 0.00061 28.0 16.5 57 15-75 64-120 (161)
65 PRK14475 F0F1 ATP synthase sub 79.6 31 0.00066 27.8 14.5 54 39-96 77-130 (167)
66 PRK08475 F0F1 ATP synthase sub 79.6 31 0.00068 27.9 12.1 51 42-96 92-142 (167)
67 TIGR03319 YmdA_YtgF conserved 79.5 60 0.0013 31.2 17.5 7 190-196 245-251 (514)
68 PF12072 DUF3552: Domain of un 79.0 36 0.00079 28.3 14.6 43 80-122 120-164 (201)
69 PRK13428 F0F1 ATP synthase sub 78.2 61 0.0013 30.4 14.2 12 42-53 97-108 (445)
70 PRK09173 F0F1 ATP synthase sub 77.3 34 0.00074 27.1 13.7 93 16-120 61-153 (159)
71 PRK13453 F0F1 ATP synthase sub 77.2 37 0.00081 27.5 13.6 54 39-96 85-138 (173)
72 PRK08476 F0F1 ATP synthase sub 77.0 34 0.00073 26.9 13.0 42 16-57 66-107 (141)
73 PRK00106 hypothetical protein; 76.3 78 0.0017 30.7 18.5 20 18-37 48-67 (535)
74 PHA03065 Hypothetical protein; 75.8 73 0.0016 30.1 12.6 83 80-169 111-198 (438)
75 PRK13455 F0F1 ATP synthase sub 74.5 45 0.00098 27.1 13.7 77 39-120 94-178 (184)
76 TIGR03321 alt_F1F0_F0_B altern 74.4 54 0.0012 28.0 17.1 49 5-57 68-116 (246)
77 PRK06669 fliH flagellar assemb 72.6 64 0.0014 28.0 13.5 51 110-168 164-214 (281)
78 PRK13436 F0F1 ATP synthase sub 71.4 36 0.00077 27.7 8.5 54 124-198 105-159 (179)
79 COG2811 NtpF Archaeal/vacuolar 68.7 51 0.0011 25.3 15.2 83 1-102 3-88 (108)
80 PRK07353 F0F1 ATP synthase sub 68.6 51 0.0011 25.3 11.7 52 47-102 54-105 (140)
81 PF00430 ATP-synt_B: ATP synth 68.4 48 0.001 24.8 9.5 8 54-61 55-62 (132)
82 PRK13454 F0F1 ATP synthase sub 68.4 65 0.0014 26.4 11.7 12 138-149 167-178 (181)
83 PRK06568 F0F1 ATP synthase sub 68.4 62 0.0014 26.2 13.4 22 16-37 63-84 (154)
84 PRK14472 F0F1 ATP synthase sub 68.2 62 0.0013 26.1 13.8 73 41-118 87-167 (175)
85 PRK09174 F0F1 ATP synthase sub 65.7 81 0.0017 26.5 11.7 20 46-65 101-120 (204)
86 PRK14474 F0F1 ATP synthase sub 65.7 89 0.0019 27.0 16.7 51 6-60 69-119 (250)
87 CHL00118 atpG ATP synthase CF0 63.9 72 0.0016 25.3 11.7 18 75-92 121-138 (156)
88 PF03938 OmpH: Outer membrane 63.1 70 0.0015 24.9 9.1 54 80-147 102-155 (158)
89 PRK12704 phosphodiesterase; Pr 62.4 1.5E+02 0.0033 28.5 18.5 18 19-36 34-51 (520)
90 PF12072 DUF3552: Domain of un 61.5 94 0.002 25.8 18.4 29 15-43 26-54 (201)
91 PF03179 V-ATPase_G: Vacuolar 59.5 68 0.0015 23.6 12.7 50 10-63 12-61 (105)
92 PRK06568 F0F1 ATP synthase sub 57.7 1E+02 0.0022 25.0 9.4 30 70-99 98-127 (154)
93 cd00491 4Oxalocrotonate_Tautom 56.5 49 0.0011 21.1 5.5 53 129-194 2-57 (58)
94 PRK14473 F0F1 ATP synthase sub 56.3 1E+02 0.0022 24.5 14.8 30 115-147 129-158 (164)
95 PRK12705 hypothetical protein; 55.8 2E+02 0.0043 27.8 17.4 24 80-103 112-135 (508)
96 PF15513 DUF4651: Domain of un 54.8 24 0.00052 24.5 3.8 10 188-197 36-45 (62)
97 PF04716 ETC_C1_NDUFA5: ETC co 54.8 64 0.0014 21.8 6.3 51 87-146 5-55 (57)
98 PRK13434 F0F1 ATP synthase sub 53.8 20 0.00042 29.3 3.9 11 188-198 145-155 (184)
99 PRK06231 F0F1 ATP synthase sub 51.6 1.4E+02 0.0031 24.9 14.7 25 70-94 142-166 (205)
100 TIGR01144 ATP_synt_b ATP synth 50.9 1.1E+02 0.0025 23.5 13.0 77 39-119 62-145 (147)
101 PRK09098 type III secretion sy 50.2 1.6E+02 0.0036 25.2 14.8 41 9-53 36-76 (233)
102 PRK15322 invasion protein OrgB 47.9 1.8E+02 0.0039 24.9 15.3 98 12-128 12-109 (210)
103 PRK07352 F0F1 ATP synthase sub 46.1 1.6E+02 0.0034 23.7 14.7 51 42-96 89-139 (174)
104 PRK13430 F0F1 ATP synthase sub 44.9 2.1E+02 0.0046 24.9 10.0 65 110-197 183-250 (271)
105 PF10669 Phage_Gp23: Protein g 44.0 1.2E+02 0.0027 23.0 6.5 42 47-90 51-92 (121)
106 TIGR00013 taut 4-oxalocrotonat 43.7 67 0.0014 20.9 4.7 53 130-195 3-59 (63)
107 PRK02220 4-oxalocrotonate taut 43.3 74 0.0016 20.6 4.8 55 129-196 3-60 (61)
108 PRK00745 4-oxalocrotonate taut 42.4 72 0.0016 20.7 4.7 56 128-196 2-60 (62)
109 PHA02571 a-gt.4 hypothetical p 42.0 98 0.0021 23.8 5.7 36 2-37 12-47 (109)
110 PRK10780 periplasmic chaperone 41.4 1.8E+02 0.0039 23.2 11.7 121 5-148 43-163 (165)
111 COG0712 AtpH F0F1-type ATP syn 41.1 41 0.00089 27.7 3.9 94 83-198 57-159 (178)
112 TIGR02499 HrpE_YscL_not type I 41.0 1.7E+02 0.0037 22.7 14.9 108 21-168 11-122 (166)
113 PF12685 SpoIIIAH: SpoIIIAH-li 40.9 2.1E+02 0.0045 23.6 8.2 73 91-166 118-195 (196)
114 TIGR01147 V_ATP_synt_G vacuola 39.8 1.7E+02 0.0038 22.5 10.9 93 20-126 13-107 (113)
115 COG0711 AtpF F0F1-type ATP syn 38.8 2E+02 0.0044 23.0 14.2 52 42-97 76-127 (161)
116 PF08740 BCS1_N: BCS1 N termin 36.0 69 0.0015 25.7 4.5 33 127-159 127-159 (187)
117 CHL00019 atpF ATP synthase CF0 35.5 2.4E+02 0.0052 22.8 14.1 32 115-149 145-176 (184)
118 PRK13461 F0F1 ATP synthase sub 34.4 2.3E+02 0.005 22.3 14.4 27 70-96 99-125 (159)
119 PF01086 Clathrin_lg_ch: Clath 34.1 1.2E+02 0.0025 25.9 5.8 43 23-66 120-162 (225)
120 PF08112 ATP-synt_E_2: ATP syn 34.0 1.5E+02 0.0032 20.0 7.6 40 9-52 8-47 (56)
121 KOG2880 SMAD6 interacting prot 32.8 3.3E+02 0.0072 25.4 8.6 43 8-50 80-122 (424)
122 PRK08474 F0F1 ATP synthase sub 32.3 82 0.0018 25.5 4.4 42 134-198 111-152 (176)
123 PRK12705 hypothetical protein; 32.3 4.7E+02 0.01 25.3 15.8 33 11-43 47-79 (508)
124 KOG3976 Mitochondrial F1F0-ATP 30.5 3.7E+02 0.0081 23.6 14.9 102 6-121 138-243 (247)
125 PRK14471 F0F1 ATP synthase sub 29.7 2.8E+02 0.0061 21.9 15.1 51 39-93 75-125 (164)
126 PRK13441 F0F1 ATP synthase sub 29.5 3E+02 0.0065 22.1 10.3 10 188-197 148-157 (180)
127 PF15640 Tox-MPTase4: Metallop 29.3 49 0.0011 26.2 2.4 24 152-175 26-50 (132)
128 PRK06418 transcription elongat 29.1 62 0.0013 26.6 3.1 57 109-166 101-165 (166)
129 PRK05759 F0F1 ATP synthase sub 28.6 2.8E+02 0.0061 21.5 14.2 49 42-94 74-122 (156)
130 PF14942 Muted: Organelle biog 26.5 3.4E+02 0.0073 21.7 8.6 21 82-102 116-136 (145)
131 PF01361 Tautomerase: Tautomer 25.8 1.5E+02 0.0032 19.2 4.0 55 128-195 1-58 (60)
132 KOG0994 Extracellular matrix g 24.6 9.6E+02 0.021 26.3 11.6 52 103-155 1506-1557(1758)
133 KOG1029 Endocytic adaptor prot 24.5 8.2E+02 0.018 25.5 14.9 7 39-45 378-384 (1118)
134 TIGR01933 hflK HflK protein. H 24.2 4.4E+02 0.0095 22.2 14.2 30 3-37 148-177 (261)
135 PRK05758 F0F1 ATP synthase sub 24.0 3.7E+02 0.008 21.3 8.9 92 83-197 56-156 (177)
136 PRK06328 type III secretion sy 23.6 4.5E+02 0.0099 22.2 10.3 116 19-168 25-140 (223)
137 PF05164 ZapA: Cell division p 23.3 1.6E+02 0.0035 20.4 4.1 36 124-159 5-40 (89)
138 PF04599 Pox_G5: Poxvirus G5 p 21.1 7.2E+02 0.016 23.6 13.4 88 80-170 109-197 (425)
139 PF08537 NBP1: Fungal Nap bind 21.0 4.1E+02 0.0088 24.3 6.9 20 77-96 203-222 (323)
140 COG0217 Uncharacterized conser 20.7 1.1E+02 0.0023 26.8 3.1 40 111-150 150-191 (241)
141 PRK01964 4-oxalocrotonate taut 20.2 2.1E+02 0.0045 18.8 3.9 55 128-195 2-59 (64)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=7.9e-57 Score=371.96 Aligned_cols=184 Identities=54% Similarity=0.797 Sum_probs=181.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029081 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (199)
Q Consensus 1 m~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~ 80 (199)
|||++|++||++|++||+|||+|||+||..+|+|||||||++||++++.+|+.+|++|+||++++++|+.|+++|++||+
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (199)
Q Consensus 81 ~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~ 160 (199)
+|++|+++|+.+|++|+++|..++.|+..|+.+|++||+|||++|+||.|+||||++|..+|++++++|..+|...+|..
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~ 160 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
+.+.+|++.|||+ + |+|||+|++-
T Consensus 161 -~e~~id~~~fL~~----------~--~~GGVvl~s~ 184 (220)
T KOG1664|consen 161 -VEVQIDKKDFLPP----------D--VAGGVVLYSR 184 (220)
T ss_pred -ceeeechhccCCc----------c--ccCCeEEEcC
Confidence 7999999999997 6 9999999874
No 2
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=99.93 E-value=3.4e-25 Score=181.88 Aligned_cols=168 Identities=32% Similarity=0.401 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~ 95 (199)
||.++|+.+|++|..+|+++++..+.....+....+...+++..++++..+....|...+++|..+|.+|+++|+++|+.
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCCC
Q 029081 96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 175 (199)
Q Consensus 96 a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~ 175 (199)
++++|.+++.+++.|..+|.+||.+++..+++++++|+|++.|.++++.+++.+...|+..+|..++....+. .||+
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 157 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYLI-- 157 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T----B--
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cccC--
Confidence 9999999998876899999999999999999999999999999999999998888888777776533444443 4554
Q ss_pred CCCCCCCCCCCccccceEEecC
Q 029081 176 PGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 176 ~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
+ |+|||++.+.
T Consensus 158 ---------~--~~GG~il~~~ 168 (198)
T PF01991_consen 158 ---------D--IIGGFILESE 168 (198)
T ss_dssp ---------S--SSSEEEEECS
T ss_pred ---------C--ccceEEEEEC
Confidence 4 9999999874
No 3
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=99.91 E-value=5.2e-22 Score=164.62 Aligned_cols=164 Identities=24% Similarity=0.299 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029081 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (199)
Q Consensus 10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l 89 (199)
|++++.-|+.+|+.++++|...|..+.+.....+..+........-++-..++++.++...|+..++.|+.+|.+|++++
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~ 83 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI 83 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999884444443333333333445555568888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccc
Q 029081 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH 169 (199)
Q Consensus 90 ~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~ 169 (199)
+++|+.|+++|.+++.+ .|+.+|.+||.+|+..|++++++|+|+|.|..++++.++.+.+ .+| . +++.++.
T Consensus 84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~----~~~-~-~~i~~~~- 154 (198)
T PRK03963 84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRD----ELG-D-VEIELGE- 154 (198)
T ss_pred HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHH----HhC-C-eEEEECC-
Confidence 99999999999999876 8999999999999999999999999999999999998887753 445 2 5666653
Q ss_pred cCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 170 IYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 170 ~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
|. + |.|||+|.+.
T Consensus 155 ---~~----------~--~~GGvil~s~ 167 (198)
T PRK03963 155 ---PI----------E--TIGGVIVETK 167 (198)
T ss_pred ---CC----------C--ccceEEEEeC
Confidence 11 4 9999999854
No 4
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.90 E-value=7.4e-22 Score=163.55 Aligned_cols=129 Identities=16% Similarity=0.315 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hHHHHHHHHHhHHHHHHHHHHHHHH
Q 029081 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK---KIRQEYERKEK-QVEIRKKIEYSMQLNASRIKVLQAQ 85 (199)
Q Consensus 10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~---kI~~~~~kk~k-~~e~~k~I~~S~~~n~~Rl~~L~ar 85 (199)
+.+++.-|.++|+.+|++|...|+.+++ .|+..... ++...|..+.+ +++..++...|++.-++|+.+|++|
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar 78 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6789999999999999999999999988 77766444 45555544444 4666666677888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHH
Q 029081 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVES 144 (199)
Q Consensus 86 ~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~ 144 (199)
+++|+++|+.|.++|.++++++ .|+++|++||.+|+.. .+|.++|+|++.|..+|++
T Consensus 79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~ 135 (185)
T PRK01194 79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINN 135 (185)
T ss_pred HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHh
Confidence 9999999999999999999765 8999999999999999 7799999999999999865
No 5
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.88 E-value=1.1e-20 Score=157.87 Aligned_cols=138 Identities=26% Similarity=0.410 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029081 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (199)
Q Consensus 9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~ 88 (199)
.++.|++||.++|+++|++|...|.++++..+.+........+...+.+..+++++.++...|++.+++|+..|++++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (199)
Q Consensus 89 l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~ 148 (199)
|+.+|+.+.++|.+++.++ .|.. |..|+.+++.++.+|+++|++++.|.++|.+++.+
T Consensus 83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~ 140 (194)
T COG1390 83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE 140 (194)
T ss_pred HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh
Confidence 9999999999999999987 4444 99999999999999999999999999998777765
No 6
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=99.83 E-value=1.2e-18 Score=143.59 Aligned_cols=130 Identities=25% Similarity=0.383 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh-HHHHHHHHHhHHHHHHHHHHHHHH
Q 029081 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEYERKEKQ-VEIRKKIEYSMQLNASRIKVLQAQ 85 (199)
Q Consensus 10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k---I~~~~~kk~k~-~e~~k~I~~S~~~n~~Rl~~L~ar 85 (199)
+..+++-|+++|+.++++|...|+.+.+ .|+.+...+ |...+..+... +..-.+...|...+.+|+.+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999988 787776655 44444433333 444456779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHH
Q 029081 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA 149 (199)
Q Consensus 86 ~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~ 149 (199)
+++|+++|..|+++|.+++.+ .|..+|.+||.+| .+++++|+|+|.|..+++.++..+
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~ 136 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY 136 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc
Confidence 999999999999999999975 8999999999998 678999999999999999887753
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.60 E-value=5.4e-13 Score=111.58 Aligned_cols=165 Identities=21% Similarity=0.233 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029081 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (199)
Q Consensus 3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L 82 (199)
+++++.=+.+|..-|..+|+.+|++|...|+++.+ +|+.+...+......+-.++++..+++..|.+....|..+|
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999 99999888888878888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCC
Q 029081 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~ 162 (199)
.+++.+++.+.+.+.+.+.+.. +++.|..++..|+.... .++++.|+.++.|...+...+. ..++..+|.
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~---~~~~~~l~~--- 147 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILR---AALGNKLKK--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHH---HHHHHHhcC---
Confidence 9999999866555555556444 56789999999999864 6688999999999888877543 334445552
Q ss_pred eEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 163 EIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 163 ~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
.|++.. +. + |.|||+|.+.
T Consensus 148 gi~i~~----~~----------~--~~gG~iv~~~ 166 (198)
T PRK01558 148 GIELKP----FK----------G--ISKGFKIQQK 166 (198)
T ss_pred CeEEcc----cC----------C--cccceEEEEc
Confidence 355543 11 4 9999999853
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.08 E-value=4.2e-08 Score=82.92 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029081 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (199)
Q Consensus 3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L 82 (199)
++.++.=+++|..-|+.+|+.+|.+|...|.++.+ .|+.+.+.+....-+.-.++++..++...|++.-.+|..+|
T Consensus 7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l 82 (207)
T PRK01005 7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778899999999999999999999999997 79999888877777788888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhc
Q 029081 83 QAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRL 125 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L 125 (199)
.++.++++.+|..+.++|..- ..|+ .+|.+||..-....
T Consensus 83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~ 122 (207)
T PRK01005 83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAI 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence 999999999999999999875 4455 67777777555544
No 9
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.80 E-value=1.2e-06 Score=70.08 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Q 029081 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ-AQDDLVSN 91 (199)
Q Consensus 13 Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~-ar~~~l~~ 91 (199)
--.-|..+|+.+|+.|...|+++++..+..-.++....-..++........ . .+-+.+. ....++ .
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~-----------~-~~~~~~~~~e~~l~-~ 80 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQ-----------Q-EAEQLEASLEERLA-E 80 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHH-H
Confidence 356788999999999999999999876655554444333332222111111 1 0111111 223333 3
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecccc
Q 029081 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170 (199)
Q Consensus 92 l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~ 170 (199)
+.-.+-+++..-. ....++..++.+++..+.+ +.++|+|+|.|.+.++..+...... .+ +.|..|+
T Consensus 81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~~---~~i~~D~-- 147 (166)
T TIGR02499 81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLAL----EP---WELEPDA-- 147 (166)
T ss_pred HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhcc----CC---eEEeeCC--
Confidence 3333333443322 3457888899999988876 6899999999999998887754221 11 2444442
Q ss_pred CCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 171 YLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 171 ~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.| +.||+++.+++
T Consensus 148 ~l---------------~~G~c~vet~~ 160 (166)
T TIGR02499 148 SL---------------APGACVLETES 160 (166)
T ss_pred CC---------------CCCCEEEEeCC
Confidence 33 45999998875
No 10
>PRK06937 type III secretion system protein; Reviewed
Probab=98.79 E-value=1.1e-06 Score=73.64 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIEYSMQLNASRIKVLQAQDDLVSNM 92 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--k~I~~S~~~n~~Rl~~L~ar~~~l~~l 92 (199)
.-|..+|++.|++|...|+++|+..+ ..-|+....+...+ .++..+ ..+...-.-....++++=+
T Consensus 33 ~~il~~A~~~A~~i~~~A~~~~e~~~-----------~~Gy~~G~~~a~~e~~e~l~~~--~~~~~~~~~~~e~~l~~Lv 99 (204)
T PRK06937 33 EELVEAARQRAEEIEAEAQEVYEQQK-----------QLGYQAGLDEARTEQAELILET--VLQCQEFYRGVEQQMSEVV 99 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999998433 23444443332222 222222 1222222334455666656
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccC
Q 029081 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 171 (199)
Q Consensus 93 ~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~ 171 (199)
+.-+++=|.... -..++..++.+++..+.+ +.|+|||+|.|++.|+..+......|. |...+.|..|+ .
T Consensus 100 l~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~---~~~~l~i~~D~--~ 169 (204)
T PRK06937 100 LEAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFP---EVGYLEVVADA--R 169 (204)
T ss_pred HHHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCC---CCccEEEEeCC--C
Confidence 665555554332 247888999999998876 589999999999999988776655442 22213455553 5
Q ss_pred CCCCCCCCCCCCCCCccccceEEecCC
Q 029081 172 LPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 172 L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
| +.||.++.+++
T Consensus 170 L---------------~~Ggc~iET~~ 181 (204)
T PRK06937 170 L---------------DQGGCILETEV 181 (204)
T ss_pred C---------------CCCCeEEecCC
Confidence 5 35899998875
No 11
>PRK09098 type III secretion system protein HrpB; Validated
Probab=98.70 E-value=1.2e-05 Score=69.14 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHH-HhHHHHHHHHHHH
Q 029081 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIE-YSMQLNASRIKVL 82 (199)
Q Consensus 6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--k~I~-~S~~~n~~Rl~~L 82 (199)
+-.+-+..-.-|..+|++.|++|...|.++|+..+. .-|.....+...+ .++. .....+..+ .
T Consensus 44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~-----------~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~---~ 109 (233)
T PRK09098 44 VLAAARARAERIVAEARAQAEAILEAARREADRSAR-----------RGYAAGLRQALAEWHARGADHAFAERRAA---R 109 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344445555566666777777777777776663332 2333333322211 1111 111122222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~--e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~ 160 (199)
..++.+++=++..+++-+... |+ ..|-..+.+++..+. .+.|+|||+|.|+++|...+...... .|..
T Consensus 110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~ 179 (233)
T PRK09098 110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN 179 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence 247788888888887777543 33 455678889987763 46899999999999999877766443 3432
Q ss_pred -CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 161 -PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 161 -~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.+.|..| ..|++ ||.++.++.
T Consensus 180 ~~l~Iv~D--p~L~~---------------GgCviET~~ 201 (233)
T PRK09098 180 VPVEVVGD--PRLAP---------------GACVCEWDF 201 (233)
T ss_pred cceEEEeC--CCCCC---------------CCeEEEeCC
Confidence 1344444 35643 777777764
No 12
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=98.67 E-value=2.1e-05 Score=68.07 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCC-
Q 029081 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH- 160 (199)
Q Consensus 84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~- 160 (199)
.+.++++=++.-|++=|... ..++ ..+..||.+++..+.+ +.|+|||+|.|++.|....+.+... ++..
T Consensus 134 ~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~----~~~~~ 205 (255)
T TIGR03825 134 AQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSI----LPACE 205 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhh----cCCCC
Confidence 44555555555555555543 3343 5689999999999987 5899999999999999877766444 3322
Q ss_pred CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.+.|..|+ .| +.||+++.+++
T Consensus 206 ~i~i~~D~--~l---------------~~GgcvIEt~~ 226 (255)
T TIGR03825 206 HLAVYPDE--KL---------------PDGGCYVETNF 226 (255)
T ss_pred ceEEEeCC--CC---------------CCCCeEEEcCC
Confidence 13444443 44 45888888764
No 13
>PRK06328 type III secretion system protein; Validated
Probab=98.53 E-value=2.2e-05 Score=66.98 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~ 95 (199)
-|...|++.|+.|...|.++++ ++-++... +-|+....+.. ..+. .+......-.-..+.++++=++.-
T Consensus 33 ~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~--~~~~--~l~~~~~~~~~~~e~~lv~Lal~i 101 (223)
T PRK06328 33 ELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWS--KQLA--FLEEETQKLREQVKEALVPLAIAS 101 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887 44444332 34444433321 1111 122222211223456677777777
Q ss_pred HHHHHHh-hccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCC
Q 029081 96 ASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (199)
Q Consensus 96 a~~kL~~-l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~ 173 (199)
|++=|.. +..|+ ..+..++.+|+..+.+ ..|+|||+|.|+++|+...++....+.. ...+.|..|. .|+
T Consensus 102 a~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~---~~~~~I~~D~--~L~ 172 (223)
T PRK06328 102 VKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEY---ADSLIISPKA--DVT 172 (223)
T ss_pred HHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccC---CCceEEEeCC--CCC
Confidence 7666654 33333 7778999999988876 4799999999999998876655444332 1224555553 553
Q ss_pred CCCCCCCCCCCCCccccceEEecCC
Q 029081 174 PGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 174 ~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.||.++.+++
T Consensus 173 ---------------~GgCiIET~~ 182 (223)
T PRK06328 173 ---------------PGGCIIETEA 182 (223)
T ss_pred ---------------CCCeEEEeCC
Confidence 3888888774
No 14
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=98.52 E-value=7.6e-05 Score=65.30 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~ 161 (199)
....++++-++.-|++=|..+.. ..+.++..||.+++..+.+ +.++|+++|.|+++++..+.+....+.. ...
T Consensus 163 ~~e~elv~Lal~iaekvi~~~~~---~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~---~~~ 236 (281)
T PRK06669 163 SSEEEIVELALDIAKKVIKEISE---NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDN---EEH 236 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCC---CCC
Confidence 35666777777777766644443 3567889999999999876 6899999999999999887777555432 122
Q ss_pred CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 162 PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 162 ~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
+.|..|. .| +.||+++.++.
T Consensus 237 i~I~~D~--~l---------------~~GgcvIet~~ 256 (281)
T PRK06669 237 LKIYEDD--AI---------------SKGGCVIETDF 256 (281)
T ss_pred eEEEECC--CC---------------CCCCeEEEcCC
Confidence 4555553 45 34999998874
No 15
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.50 E-value=3.2e-05 Score=64.59 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
..-|..+|+.+|+.|...|+++++ .++.+....+.+.|.......- .... ..|-.+...-.+....++
T Consensus 32 a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll-------~~~~-~~~e~l~~~l~~~~~~ll 99 (191)
T PF06188_consen 32 AREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALL-------QEWQ-QQREQLLQQLEEQAEELL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 8888777766666654332211 1111 224455666677778888
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (199)
Q Consensus 94 ~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~ 148 (199)
..+-.+|.+-..++.++..++++|..+- ..+++.+|+|.|.+.+.|...+.+
T Consensus 100 ~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~ 151 (191)
T PF06188_consen 100 SQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE 151 (191)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh
Confidence 8888888876666778888998887553 577899999999999999877774
No 16
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00032 Score=60.32 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH--HH
Q 029081 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR--IK 80 (199)
Q Consensus 3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~R--l~ 80 (199)
+++....+.++...+...+.+.++.|...+++-|+ ..++.....=..+..-+.. +.++ .+.+++... +.
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~---~~e~--~~~li~~~~~~~~ 109 (234)
T COG1317 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGR---VLER--LAKLIAEFQAELE 109 (234)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHH
Confidence 45677888899999999999999999999999988 4444433322211111000 1111 122222221 11
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--ceEEEeccccHHHHHHHHHHHHHHHHHH
Q 029081 81 VL--QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEYAQK 156 (199)
Q Consensus 81 ~L--~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~--~v~V~cr~~D~~lV~~~l~~~~~~y~~~ 156 (199)
-| ....++++-++.-|++=|..... .-+..|..+|.++|..+... .++|||+|.|+++|+..++...+.+
T Consensus 110 ~~~~~~e~qLv~lvl~ia~~Vi~~~~~---~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~--- 183 (234)
T COG1317 110 ALKEVVEKQLVQLVLEIARKVIGKELE---LDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL--- 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHh---cCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc---
Confidence 11 24556777777777776666543 24588999999999877654 6999999999999999988553332
Q ss_pred hCCCCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 157 ~~~~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
+.. +.|.-| ..| .-||+++++|.
T Consensus 184 -~~~-l~l~~D--~~l---------------~~GgC~IeTe~ 206 (234)
T COG1317 184 -GWR-LELVAD--PAL---------------SPGGCIIETEF 206 (234)
T ss_pred -chh-eeeccC--CCC---------------CCCCeEEEecC
Confidence 221 223333 233 35999999985
No 17
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=97.81 E-value=0.0092 Score=51.38 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
....++|+.++.+|...|..+.+.++..++.+....+.....+....++.+++-. .-..|.++.+-.+.
T Consensus 63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a-----------~~~l~~ei~~la~~ 131 (246)
T TIGR03321 63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL-----------SDELRRRTGAEVFA 131 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3466789999999999999999999999998888877766666555555443322 22345566666677
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHhc--------------CCCceEEE-eccccHHHHHHHHHHHHHHHHHHhCC
Q 029081 95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--------------KEPAVLLR-CRKDDHHLVESVLESAKEEYAQKLQV 159 (199)
Q Consensus 95 ~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L--------------~e~~v~V~-cr~~D~~lV~~~l~~~~~~y~~~~~~ 159 (199)
-|.+-|.+.. |+..++.++...|.+ +..+ .+..++|. ..|=+-+....+...+ .+.+|.
T Consensus 132 ~A~kil~~~~-d~~~~~~lid~~i~~-l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l----~~~~~~ 205 (246)
T TIGR03321 132 IARKVLTDLA-DTDLEERMVDVFVQR-LRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTI----RETLGP 205 (246)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHHH----HHHHCC
Confidence 7766666644 334565666555531 2111 12224333 5555555555554444 445564
Q ss_pred CC-CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 160 HP-PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 160 ~~-~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.. ++..+|+ + .+|||++.-.+
T Consensus 206 ~v~~~~~vdp----------------~--ligGi~l~~g~ 227 (246)
T TIGR03321 206 EIRLRFQTEP----------------D--LIGGIELTAGG 227 (246)
T ss_pred CeeEEeeeCc----------------h--hcCceEEEECC
Confidence 41 2333332 4 89999987654
No 18
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=97.74 E-value=0.0077 Score=51.03 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
+...|+..|..|...|...|+.++.+=.+.....=. .++-+.|...+.-...++..|. .++.+=+++.+
T Consensus 35 ~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~---------e~~A~llaqa~a~v~r~~a~LE--~~l~~LVl~~V 103 (207)
T PF06635_consen 35 FLAAARREAQRIREWARAAYERERARGYEEGRRAGA---------EQAARLLAQATAEVARYLAGLE--QELAELVLEIV 103 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 456799999999999999999766654433332111 2333445555554445555554 77888888888
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHhcCCC-ceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCC
Q 029081 97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174 (199)
Q Consensus 97 ~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~-~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~ 174 (199)
++=|..+..+ ++|...+.+++..+..+ .|+||+.|.|++.+...+..+. . ..|.+ +|.|..+.-|++
T Consensus 104 r~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~---~~g~~--~i~I~aDp~La~ 171 (207)
T PF06635_consen 104 RKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-G---RPGRP--KIRIVADPRLAA 171 (207)
T ss_pred HHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-c---cCCCC--ceeeecCCCCCC
Confidence 8888777654 78889999999988777 8899999999999998887662 2 23554 444443346643
No 19
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=97.53 E-value=0.0031 Score=51.40 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029081 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (199)
Q Consensus 11 ~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~ 90 (199)
..=...+..+|+.+|.+|...|..+.+.++..++.+.........++. .+.+-.+.+.-+...|.++++
T Consensus 76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a-----------~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 76 KEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSF-----------EELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 334456778999999999999999999888888877666555444443 344444456678889999999
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHH
Q 029081 91 NMMEAASKEVLNVSRDHNSYKKLLK 115 (199)
Q Consensus 91 ~l~~~a~~kL~~l~~~~~~Yk~lL~ 115 (199)
++|.. +|.+++.+ .|-.++.
T Consensus 145 ~~~~~---~~~~l~~~--~y~~~~~ 164 (167)
T PRK08475 145 ELFES---KKVSLNQQ--EYVNILL 164 (167)
T ss_pred HHHHh---hhcCCCHH--HHHHHHh
Confidence 99999 88888754 7888765
No 20
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=97.38 E-value=0.018 Score=49.50 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC--CceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (199)
Q Consensus 84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e--~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~ 160 (199)
.++.+|+=++.-|+.=+..- ..+| ..+..+|.+|+..|.. +.|+|+|+|.|+++|+..+++. ..
T Consensus 120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~---------~~ 186 (236)
T PRK13386 120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK---------VQ 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc---------cc
Confidence 45566666666666655552 3333 5677999999999965 5899999999999998876541 11
Q ss_pred CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
..+|..|. .|. .||.+|.++.
T Consensus 187 ~~~l~~D~--~l~---------------~GgC~Iet~~ 207 (236)
T PRK13386 187 AWGLVADP--SLS---------------AGECRIVTDT 207 (236)
T ss_pred CeEEEeCC--CcC---------------CCCEEEEeCC
Confidence 14565554 553 4888887763
No 21
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=97.28 E-value=0.021 Score=43.22 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHH-Hhc-CCCceEEEeccccHHHHHHHHHHHHHHHHHHhCC
Q 029081 83 QAQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSL-LRL-KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~~kL~~-l~~~~~~Yk~lL~~LI~q~l-~~L-~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~ 159 (199)
..+.++++-++.-|++=+.. +..+ ...+.++|.+++ ..+ ..+.++|+|+|.|++.++..++..... .
T Consensus 24 ~~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~------~ 93 (128)
T PF02108_consen 24 ELEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE------L 93 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh------c
Confidence 35666666667666666654 3333 367778999998 433 344799999999999998887733222 1
Q ss_pred CCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 160 HPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 160 ~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
. ..+..|. .|+ .||+++.+++
T Consensus 94 ~-~~l~~D~--~l~---------------~G~c~iet~~ 114 (128)
T PF02108_consen 94 G-WELVADP--SLA---------------PGDCRIETED 114 (128)
T ss_pred C-CEEEecC--CCC---------------CCCEEEEECC
Confidence 1 3566664 564 3888887764
No 22
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=97.06 E-value=0.078 Score=45.45 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (199)
Q Consensus 84 ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~--e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~ 161 (199)
....+++-++.-|++=+..-.. .....+..+|.+++..+. .+.|+|+|+|.|+++|+..+.... . ..|
T Consensus 133 ie~~Lv~Lal~ia~~vi~~el~---~~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~~~---~-~~~--- 202 (246)
T PRK05687 133 IESRLVQLALELARQVIGQELK---TDPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGAEL---S-LHG--- 202 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhhHH---H-hCC---
Confidence 3455666666666655554322 133678889999999875 578999999999999999876221 1 112
Q ss_pred CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 162 PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 162 ~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
..|..|. .|. .||+++.+++
T Consensus 203 ~~l~~D~--~l~---------------~Ggc~iet~~ 222 (246)
T PRK05687 203 WRLLADP--SLH---------------RGGCRISAEE 222 (246)
T ss_pred eEEEeCC--CcC---------------CCCeEEEeCC
Confidence 4666664 553 4888888764
No 23
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=96.21 E-value=0.6 Score=38.98 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (199)
Q Consensus 84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~ 161 (199)
.++++++=++.-|++=+... ..++ ...+..++.+++..+.+ |.|+|+|+|.|++.|+..+++.... .|..
T Consensus 85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~~~~- 156 (199)
T PRK06032 85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARE----SGFE- 156 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHh----cCcC-
Confidence 34444444455555444443 3322 12577888999888877 4699999999999999888876443 3432
Q ss_pred CeEeeccccCCCC
Q 029081 162 PEIIVDHHIYLPP 174 (199)
Q Consensus 162 ~~i~id~~~~L~~ 174 (199)
..+.|-.+..|++
T Consensus 157 ~~~~l~~D~~L~~ 169 (199)
T PRK06032 157 GRLVVLADPDMAP 169 (199)
T ss_pred ccEEEeeCCCCCC
Confidence 2444444446654
No 24
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=95.39 E-value=0.44 Score=39.45 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029081 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65 (199)
Q Consensus 7 ~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~ 65 (199)
.++-++=...|..+|+.+|++|...|+++.+..+..+.......+...+++-...+.++
T Consensus 11 ~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le 69 (185)
T PRK01194 11 EKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIE 69 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444555555555555555555555555555554444444444444444443333
No 25
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=95.30 E-value=1.7 Score=37.61 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
-.++|+.++.+|...|..+.+.++.+++.+.+..+.....+....++.+++-. .-..|.++.+-++.-|
T Consensus 65 ~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a-----------~~~L~~~v~~la~~~A 133 (250)
T PRK14474 65 KQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF-----------FKALQQQTGQQMVKII 133 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 35578888888888888888888888888877777766666555555444322 2334566667777777
Q ss_pred HHHHHhhccChhHHHHHHHHHH
Q 029081 97 SKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 97 ~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
.+-|.+.. |+.....++..+|
T Consensus 134 ~kiL~~~~-d~~~~~~lid~~i 154 (250)
T PRK14474 134 RAALADLA-NATLEQQIVGIFI 154 (250)
T ss_pred HHHHHhhc-CHHHHHHHHHHHH
Confidence 77777765 3345666666666
No 26
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=94.89 E-value=1.8 Score=35.60 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029081 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA 76 (199)
Q Consensus 5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~--------~S~~~n~ 76 (199)
++..+-+.=..-|..+|+.+|++|...|.++++.+...++......+..+-++....+.++.+.. .+.+.+.
T Consensus 10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~ 89 (198)
T PRK03963 10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA 89 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677888889999999999888888888888888877766665555555544443322 2334444
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHH
Q 029081 77 SRIKVLQ----AQDDLVSNMMEAASKEVL 101 (199)
Q Consensus 77 ~Rl~~L~----ar~~~l~~l~~~a~~kL~ 101 (199)
++-++.+ .-..+|..++.++...|.
T Consensus 90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~ 118 (198)
T PRK03963 90 VRERLAELPEDEYFETLKALTKEAVEELG 118 (198)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence 4433332 234567777777766664
No 27
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=94.64 E-value=2.1 Score=35.14 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
..+.++|+..|.+|...|..+.+.++..++.+....+......-...++.+++ .-.-..|.++.+-++.
T Consensus 82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~-----------~a~~~l~~ei~~lav~ 150 (184)
T CHL00019 82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQ-----------RAINQVRQQVFQLALQ 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 44788899999999999999999888888877776666544444444443322 2233445667777777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 029081 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (199)
Q Consensus 95 ~a~~kL~~l~~~~~~Yk~lL~~LI~ 119 (199)
.|.+-|.+.. |++....++...|.
T Consensus 151 ~A~kil~~~l-d~~~~~~lid~~i~ 174 (184)
T CHL00019 151 RALGTLNSCL-NNELHLRTINANIG 174 (184)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHHH
Confidence 7777777654 44455555555554
No 28
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=94.43 E-value=1.4 Score=33.17 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k 50 (199)
-++++|+.++.+|...|..+.+..+..++.+....
T Consensus 17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~e 51 (103)
T PRK08404 17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEE 51 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444444444433
No 29
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=94.31 E-value=3 Score=35.97 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 12 QMVRFIRQEAEEKANEISVSAEEEFNI 38 (199)
Q Consensus 12 ~Mv~fI~~EA~eKA~EI~~kAeeE~ei 38 (199)
+-..-++..|+++|.+|...|+.+++.
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~ 66 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQIIEQAEAQAAA 66 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777777763
No 30
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=94.00 E-value=3.9 Score=38.39 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
...+.++|+.++.+|...|.++.+..+..++.+....+.........+++.+++ .. +-..|.++.+-.+
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~----~a-------~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRA----QL-------TRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHH
Confidence 445677788888888888888888777777766555555444444444443322 22 2234566667777
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCc
Q 029081 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA 129 (199)
Q Consensus 94 ~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~ 129 (199)
..|.+-|.+-..++...+.++...| +.+..+..+.
T Consensus 127 ~~A~kil~~~l~d~~~~~~lId~~i-~~l~~~~~~~ 161 (445)
T PRK13428 127 RQAGELVRNHVADPAQQSATVDRFL-DELDAMAPST 161 (445)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccCCCc
Confidence 7777777653333334455555555 4444555443
No 31
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=93.95 E-value=2.8 Score=33.99 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
...+++|+.+|.+|...|..+.+.++..++.+....+..........++.+++- -.-..|.++.+-+..
T Consensus 77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~-----------a~~~l~~qi~~la~~ 145 (174)
T PRK07352 77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQER-----------VIAQLRREAAELAIA 145 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345778888888888888888888888888776666665444444444433221 223445667777777
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029081 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 95 ~a~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
-|.+-|..-. ++..+..++..+|
T Consensus 146 ~A~kil~~~l-~~~~~~~li~~~i 168 (174)
T PRK07352 146 KAESQLPGRL-DEDAQQRLIDRSI 168 (174)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHH
Confidence 7777777654 3334555555544
No 32
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=93.26 E-value=4.3 Score=33.87 Aligned_cols=43 Identities=30% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
+-.+-++=...|..+|+.+|++|..+|+++.+ .|+......+.
T Consensus 16 ~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~ 58 (198)
T PRK01558 16 GLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34445556677888889999999888888877 66666544444
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=93.16 E-value=4.6 Score=33.96 Aligned_cols=93 Identities=20% Similarity=0.140 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
....+++|+.+|.+|...|.++.+..+..++.+....+....+....+++.+++- -.-..|.++.+-..
T Consensus 105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~-----------a~~~Lk~ei~~lAv 173 (205)
T PRK06231 105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE-----------LKEQLQKESVELAM 173 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3456678888888888888888887777777665554444333333333322221 12223444445555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029081 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 94 ~~a~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
.-|.+-|.+-. |+..++.++...|
T Consensus 174 ~iA~kiL~k~l-d~~~~~~lI~~~i 197 (205)
T PRK06231 174 LAAEELIKKKV-DREDDDKLVDEFI 197 (205)
T ss_pred HHHHHHHHhhC-CHHHHHHHHHHHH
Confidence 55555554432 3334555555544
No 34
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=92.61 E-value=4.5 Score=32.40 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
......+|+.+|.+|...|..+.+.++..++.+...++....+....+++.++.-. .-..|.++.+-.+
T Consensus 65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a-----------~~~L~~~i~~la~ 133 (164)
T PRK14473 65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM-----------LSELKSQIADLVT 133 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44566788888888888888888877777777766666555444444444333221 1223444555555
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029081 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 94 ~~a~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
.-|.+-|..-. |++.+..++...|
T Consensus 134 ~~a~kil~~~l-~~~~~~~li~~~i 157 (164)
T PRK14473 134 LTASRVLGAEL-QARGHDALIAESL 157 (164)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence 55555444422 3445555554444
No 35
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=91.70 E-value=6.2 Score=32.00 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
...+++|+.+|.+|...|.++.+..+..++.+....+....+....+++.+++ ..++ ..|.++.+-.+.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~----~a~~-------el~~ei~~lA~~ 142 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG----KALS-------QLQNQIVEMTIT 142 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHH
Confidence 45577888888888888888888777777766665555444443333333322 2222 234455555566
Q ss_pred HHHHHHHhhccChhHHHHHHHHHH
Q 029081 95 AASKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 95 ~a~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
-|.+-|.+-. |+..+..++...|
T Consensus 143 ~a~kil~~~l-~~~~~~~lid~~i 165 (173)
T PRK13460 143 IASKVLEKQL-KKEDYKAFIETEL 165 (173)
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHH
Confidence 6655555543 3334555544444
No 36
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=91.02 E-value=8.8 Score=32.51 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 029081 7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67 (199)
Q Consensus 7 ~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~ 67 (199)
-.+.++=...|..+|+.+|++|..+|..+.+ +|+.+...++..+..+-...+++..+
T Consensus 22 L~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R 78 (207)
T PRK01005 22 LKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGK 78 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555678889999999999999998877 88888888887777766666665543
No 37
>PRK00106 hypothetical protein; Provisional
Probab=90.91 E-value=13 Score=35.92 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHH
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQS 121 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~~--~~Yk~lL~~LI~q~ 121 (199)
+-|..+..-++.+..+....|..++.-+ .-...+|..+-.++
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~ 182 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4455555555555555655565554332 13444455444443
No 38
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=90.41 E-value=7.9 Score=30.95 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (199)
Q Consensus 13 Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~ 49 (199)
-......+|+.++.+|...|.++.+..+..++.+...
T Consensus 64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ 100 (164)
T PRK14471 64 DNERLLKEARAERDAILKEAREIKEKMIADAKEEAQV 100 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777777777555555544333
No 39
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=90.12 E-value=6.2 Score=29.31 Aligned_cols=89 Identities=16% Similarity=0.252 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (199)
Q Consensus 20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~k 99 (199)
+|+..|.+|..+|..... .++.+.+.....+...=..+.+ ........+.+.........+..++..+
T Consensus 11 ~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~~~ 78 (105)
T PF03179_consen 11 EAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETEEK 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 456666666666655544 5554444433332211111111 1111112234555666777777777777
Q ss_pred HHhhccChhHHHHHHHHHHHH
Q 029081 100 VLNVSRDHNSYKKLLKGLIVQ 120 (199)
Q Consensus 100 L~~l~~~~~~Yk~lL~~LI~q 120 (199)
+..+..+......-..++|+.
T Consensus 79 i~~i~~~~~~~~~~vv~~ll~ 99 (105)
T PF03179_consen 79 IEEIKKSASKNKDKVVDMLLS 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 777754433444444444444
No 40
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=89.69 E-value=7.1 Score=29.37 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (199)
Q Consensus 19 ~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~ 97 (199)
.+|+.+++++...|..+.. .|+...+..-...|..-..++... ...++..+|..+=..+...+.++-.++.
T Consensus 9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~e----A~~ile~Ak~eie~Ek~~a~~elk~eia 79 (103)
T PRK08404 9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEE----AQKLIEKKKKEGEEEAKKILEEGEKEIE 79 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888888888888 888888888888888777776644 5566777777777777777776666553
No 41
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=89.47 E-value=10 Score=30.88 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHhHHHHHHHHH
Q 029081 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--------KKIEYSMQLNASRIK 80 (199)
Q Consensus 9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--------k~I~~S~~~n~~Rl~ 80 (199)
+-++=..-|+.+|+..+++|...|+++.+..+..+.............+....+... ++--...+...++-+
T Consensus 13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~k 92 (188)
T PRK02292 13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDE 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555554444444433333333322222222222 222234444445544
Q ss_pred HHH----HHHHHHHHHHHHH
Q 029081 81 VLQ----AQDDLVSNMMEAA 96 (199)
Q Consensus 81 ~L~----ar~~~l~~l~~~a 96 (199)
+.+ ....+|..++..+
T Consensus 93 L~~~~~~~y~~~l~~li~~~ 112 (188)
T PRK02292 93 IASLDGDKREELTKSLLDAA 112 (188)
T ss_pred HHhcchhhHHHHHHHHHHhc
Confidence 332 2445666666655
No 42
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.43 E-value=9.5 Score=30.41 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
....+++|+.+|.+|...|.++.+.++..++.+....+.
T Consensus 79 ~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~ 117 (156)
T CHL00118 79 YEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYID 117 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777666555555444433
No 43
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=89.19 E-value=12 Score=31.34 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (199)
Q Consensus 20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~k 99 (199)
+++...+.|...|+++.+ .|......... +-..++.-..+-..-......+-+.-..+..++..+.-+++..
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae----~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILEEAREEAE----KIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999998888 77755333322 2222222222223445555566677778888888877777777
Q ss_pred HHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecccc-CC-C----
Q 029081 100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI-YL-P---- 173 (199)
Q Consensus 100 L~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~-~L-~---- 173 (199)
+.. .++.+|.+.+...-..| .-.-.+.+...+..++.++...| .|.+ +.|.+++.. .+ +
T Consensus 75 ~Le------~~ee~l~~~~~~~~e~L-----~~i~~~~~~~~l~~ll~~~~~~~---~~~~-~iV~~~e~d~~~v~~~~~ 139 (194)
T COG1390 75 LLE------AKEEILESVFEAVEEKL-----RNIASDPEYESLQELLIEALEKL---LGGE-LVVYLNEKDKALVEQILR 139 (194)
T ss_pred HHH------HHHHHHHHHHHHHHHHH-----HcCcCCcchHHHHHHHHHHHHhc---CCCC-eEEEeCcccHHHHHHHHh
Confidence 755 46677777444333333 22334456666777777776654 3333 345544211 11 0
Q ss_pred -CCCCCCCCCCCCCccccceEEecCC
Q 029081 174 -PGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 174 -~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.........+.+ |.|||++++..
T Consensus 140 ~~~~~~~~~~~~d--~~GGvvv~~~d 163 (194)
T COG1390 140 ELKIGVELGEGID--IIGGVVVESRD 163 (194)
T ss_pred hcccchhccccCC--CcceEEEEeCC
Confidence 001111222225 99999998753
No 44
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=89.16 E-value=11 Score=30.62 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~ 53 (199)
.....+|+.+|.+|...|.++.+..+..++.+....+..
T Consensus 76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~ 114 (175)
T PRK14472 76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKK 114 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777776666666555554443
No 45
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=89.15 E-value=11 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 18 RQEAEEKANEISVSAEEEFNIEKLQLV 44 (199)
Q Consensus 18 ~~EA~eKA~EI~~kAeeE~eiEK~~iv 44 (199)
+++|+.++.+|...|.++.+.+...+.
T Consensus 88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~ 114 (184)
T PRK13455 88 QREVQEQADRIVAAAKDEAQAAAEQAK 114 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555553333333
No 46
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=89.12 E-value=6.6 Score=28.22 Aligned_cols=24 Identities=0% Similarity=0.032 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 72 MQLNASRIKVLQAQDDLVSNMMEA 95 (199)
Q Consensus 72 ~~~n~~Rl~~L~ar~~~l~~l~~~ 95 (199)
.++..+|..+-..+..++..+..+
T Consensus 50 ~ii~~Ak~ei~~e~~~a~~e~k~e 73 (85)
T TIGR02926 50 EIIKEAEEEIEKEAEKIREEGEKE 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444433
No 47
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=88.79 E-value=10 Score=29.85 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
....+.+|+.++.+|...|..+.+.++..++.+....+....+.....++.+++ .-.-..+.++.+-..
T Consensus 61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~~~~~lA~ 129 (156)
T PRK05759 61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK-----------RAREELRKQVADLAV 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445667788888888888888888777777766555555444333333332221 122334455556666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHH
Q 029081 94 EAASKEVLNVSRDHNSYKKLLKGLI 118 (199)
Q Consensus 94 ~~a~~kL~~l~~~~~~Yk~lL~~LI 118 (199)
.-|.+-|.+.. |+.....++...|
T Consensus 130 ~~a~k~l~~~~-d~~~~~~~i~~~i 153 (156)
T PRK05759 130 AGAEKILGREL-DAAAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence 66655555543 3334555555544
No 48
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=87.67 E-value=11 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
...+.+|+.+|.+|...|..+.+.++..++.+.... ....+..+|..+...+...+..+..
T Consensus 63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~e-------------------a~~~~~~a~~~i~~e~~~a~~~l~~ 123 (140)
T PRK07353 63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAE-------------------AQASKEKARREIEQQKQAALAQLEQ 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666665555555444433 3344445555566666666555555
Q ss_pred HH
Q 029081 95 AA 96 (199)
Q Consensus 95 ~a 96 (199)
.+
T Consensus 124 ~v 125 (140)
T PRK07353 124 QV 125 (140)
T ss_pred HH
Confidence 44
No 49
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=87.59 E-value=13 Score=29.89 Aligned_cols=10 Identities=30% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 029081 28 ISVSAEEEFN 37 (199)
Q Consensus 28 I~~kAeeE~e 37 (199)
|...|+++.+
T Consensus 2 I~~eA~~ka~ 11 (198)
T PF01991_consen 2 IEEEAQEKAE 11 (198)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 4444444444
No 50
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=87.07 E-value=14 Score=29.43 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
.....+|+.+|.+|...|..+.+..+..++.+....+....+.....++.++. .-.-..|.++.+-.+.
T Consensus 63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~lA~~ 131 (159)
T PRK13461 63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVDLAVL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 45667788888888888888888777777776666555444443333332221 1122334444455555
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHH
Q 029081 95 AASKEVLNVSRDHNSYKKLLKGLIV 119 (199)
Q Consensus 95 ~a~~kL~~l~~~~~~Yk~lL~~LI~ 119 (199)
-|.+-|.... |+..+..++...|.
T Consensus 132 ~a~kil~~~~-~~~~~~~li~~~i~ 155 (159)
T PRK13461 132 LSSKALEESI-DESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHhHc-CHHHHHHHHHHHHh
Confidence 5555555433 33345555555443
No 51
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=86.92 E-value=19 Score=30.92 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
.-|...|..||.+|...|..+-. .+..+.....+.-...-..+.|.+ ..+.-.+-|-+-+++...+..
T Consensus 44 ~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E~~--------~L~qHV~wLve~e~lE~sLV~ 111 (224)
T PRK15354 44 HAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKMEVE--------WLEQHVKHLQEDENQFRSLVD 111 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHH
Confidence 46899999999999988887655 444443222221111111111111 111122333334444444444
Q ss_pred HHHHHHHhh--------ccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHH
Q 029081 95 AASKEVLNV--------SRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (199)
Q Consensus 95 ~a~~kL~~l--------~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l 146 (199)
.++.++..- .....--.-+...|=.|....-.++.+++++-|++.+.+...+
T Consensus 112 ~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af 171 (224)
T PRK15354 112 HAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence 444443331 2222234567777888999999999999999999998884433
No 52
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=86.88 E-value=12 Score=28.71 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~ 53 (199)
.-|..+|+++|.+|..+|+.+....+..++......+..
T Consensus 31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ 69 (108)
T COG2811 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666555544444
No 53
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=86.38 E-value=10 Score=27.25 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~ 53 (199)
.|..+|...|+.|...+..+...+..+|+.+.+..|..
T Consensus 24 ~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~ 61 (85)
T TIGR02926 24 QRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555444444443
No 54
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=85.97 E-value=14 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
....+++|+..|.+|...|..+.+..+..++.+....+.
T Consensus 52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~ 90 (147)
T TIGR01144 52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777666666655444433
No 55
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.68 E-value=20 Score=30.12 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~e 37 (199)
..+.+|+.+|.+|...|.++.+
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~ 133 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAK 133 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444444
No 56
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=85.32 E-value=11 Score=28.41 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
.....+|+..+.+|...|.++.+..+..++.+....+. ..+..++-.+-..++.++.++..
T Consensus 57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~-------------------~~~~~a~~~i~~e~~~a~~~l~~ 117 (132)
T PF00430_consen 57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAE-------------------RIIEQAEAEIEQEKEKAKKELRQ 117 (132)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444444443333322 33444454555555555555544
Q ss_pred HH
Q 029081 95 AA 96 (199)
Q Consensus 95 ~a 96 (199)
.+
T Consensus 118 ~~ 119 (132)
T PF00430_consen 118 EI 119 (132)
T ss_dssp --
T ss_pred HH
Confidence 43
No 57
>PRK12704 phosphodiesterase; Provisional
Probab=85.24 E-value=37 Score=32.66 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVS 104 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~ 104 (199)
+-|..+..-++.+..+....|..++
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555565553
No 58
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=85.10 E-value=18 Score=29.08 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 17 IRQEAEEKANEISVSAEEEFNIEKLQLV 44 (199)
Q Consensus 17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv 44 (199)
.+..|+.+|.+|...|.++.+.+...+.
T Consensus 70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~ 97 (167)
T PRK14475 70 EREEAERQAAAMLAAAKADARRMEAEAK 97 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666664444444
No 59
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=84.53 E-value=39 Score=32.41 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=5.5
Q ss_pred HHHHHHHHHHH
Q 029081 143 ESVLESAKEEY 153 (199)
Q Consensus 143 ~~~l~~~~~~y 153 (199)
+.+|..|.+.|
T Consensus 185 ~~i~~~aiqr~ 195 (514)
T TIGR03319 185 KEILATAIQRY 195 (514)
T ss_pred HHHHHHHHHhc
Confidence 44555555554
No 60
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=83.62 E-value=23 Score=29.04 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv 44 (199)
..++.+|+.++.+|...|.++.+.++..++
T Consensus 89 e~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~ 118 (181)
T PRK13454 89 NKALADARAEAQRIVAETRAEIQAELDVAI 118 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554433333
No 61
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=83.17 E-value=21 Score=28.29 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029081 72 MQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 72 ~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
...+.++..+-..|...+.++..
T Consensus 98 ~~~~~a~~~I~~ek~~a~~el~~ 120 (159)
T PRK09173 98 RRNKLAEQKIAQAETDAINAVRS 120 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444444433
No 62
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=82.14 E-value=25 Score=28.41 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (199)
Q Consensus 42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~ 98 (199)
.|+.+.+.......+....++.-+ ....+..++..+-..|+..+..+..++-.
T Consensus 86 ~ii~~A~~ea~~~~~~~~~~A~~e----a~~~~~~a~~~ie~e~~~a~~el~~ei~~ 138 (173)
T PRK13460 86 AIVAEAKSDALKLKNKLLEETNNE----VKAQKDQAVKEIELAKGKALSQLQNQIVE 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444443322 44455555555666666555555554433
No 63
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=80.90 E-value=28 Score=28.19 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~ 53 (199)
...+.+|+.+|.+|...|..+.+.++..++.+.......
T Consensus 76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~ 114 (173)
T PRK13453 76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776666666555544443
No 64
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=80.60 E-value=28 Score=28.00 Aligned_cols=57 Identities=30% Similarity=0.298 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n 75 (199)
.--+.+|+.+|.+|...|..+.. .+.+..+.+...+.++...+++.+-..++...+.
T Consensus 64 ~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~ 120 (161)
T COG0711 64 EQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAEAEIEAEKERALE 120 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888888887 4444444555555555555544443333333333
No 65
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=79.57 E-value=31 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 39 EKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 39 EK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
+-..|+.+.+......++....+++- +....+..+|..+-..|...+.++..++
T Consensus 77 ea~~Ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~A~~~I~~e~~~a~~el~~e~ 130 (167)
T PRK14475 77 QAAAMLAAAKADARRMEAEAKEKLEE----QIKRRAEMAERKIAQAEAQAAADVKAAA 130 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666555555555554444432 2445566666666666666666555443
No 66
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=79.56 E-value=31 Score=27.87 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
.|+.+.+......++....++.. ...+....++..+-..|...+.++..++
T Consensus 92 ~Ii~~A~~eAe~~~~~ii~~A~~----ea~~~~~~a~~~ie~Ek~~a~~elk~ei 142 (167)
T PRK08475 92 LIVETAKKEAYILTQKIEKQTKD----DIENLIKSFEELMEFEVRKMEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333332 2334444444444444444444444444
No 67
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.54 E-value=60 Score=31.16 Aligned_cols=7 Identities=0% Similarity=-0.392 Sum_probs=2.8
Q ss_pred cceEEec
Q 029081 190 GGFSRWE 196 (199)
Q Consensus 190 GGvvl~~ 196 (199)
+-|+|++
T Consensus 245 ~~v~ls~ 251 (514)
T TIGR03319 245 EAVILSG 251 (514)
T ss_pred CeEEecC
Confidence 3344443
No 68
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.95 E-value=36 Score=28.30 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHHH
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQSL 122 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~~--~~Yk~lL~~LI~q~l 122 (199)
..|..+..-++.+......+|..+++=+ .-...+|..|=.++-
T Consensus 120 ~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk~~Ll~~le~e~~ 164 (201)
T PF12072_consen 120 EELEEREEELEELIEEQQQELEEIAGLTAEEAKEILLEKLEEEAR 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666655553322 134555555544443
No 69
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=78.20 E-value=61 Score=30.44 Aligned_cols=12 Identities=0% Similarity=0.183 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQ 53 (199)
Q Consensus 42 ~iv~~ek~kI~~ 53 (199)
++..+....|..
T Consensus 97 ~i~~~a~~~Ie~ 108 (445)
T PRK13428 97 RIKVQGARQVQL 108 (445)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 70
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=77.27 E-value=34 Score=27.08 Aligned_cols=93 Identities=26% Similarity=0.282 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~ 95 (199)
-.++.|+.+|.+|...|..+.+ .++.+...+......+...++... +-.+...-.-..|.++.+-.+.-
T Consensus 61 ~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~-------I~~ek~~a~~el~~~~~~lA~~~ 129 (159)
T PRK09173 61 RKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQK-------IAQAETDAINAVRSSAVDLAIAA 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777766 555554454444444433222211 11111112334456666666776
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHH
Q 029081 96 ASKEVLNVSRDHNSYKKLLKGLIVQ 120 (199)
Q Consensus 96 a~~kL~~l~~~~~~Yk~lL~~LI~q 120 (199)
|.+-|..-. |+..+..++...|.+
T Consensus 130 A~kil~~~l-~~~~~~~li~~~i~~ 153 (159)
T PRK09173 130 AEKLLAEKV-DAKAASELFKDALAQ 153 (159)
T ss_pred HHHHHHhhc-CHHHHHHHHHHHHHH
Confidence 666665543 444566666666644
No 71
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=77.19 E-value=37 Score=27.47 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 39 EKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 39 EK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
+-..|+.+.+......++....++.-+ ....+..+|..+-..+...+.++..++
T Consensus 85 ea~~ii~~a~~~a~~~~~~~~~~A~~e----a~~~~~~A~~~I~~ek~~a~~~l~~ei 138 (173)
T PRK13453 85 EVQKILEDAKVQARQQQEQIIHEANVR----ANGMIETAQSEINSQKERAIADINNQV 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333666666665555555555444322 334444555555555555555554443
No 72
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=77.04 E-value=34 Score=26.89 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~k 57 (199)
.+.++|+.+|..+...|..++..+..+++.+....+..+..+
T Consensus 66 ~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~ 107 (141)
T PRK08476 66 TILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEA 107 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556665555555544333
No 73
>PRK00106 hypothetical protein; Provisional
Probab=76.34 E-value=78 Score=30.72 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029081 18 RQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 18 ~~EA~eKA~EI~~kAeeE~e 37 (199)
..+|+.+|+.|...|..+..
T Consensus 48 leeAe~eAe~I~keA~~EAk 67 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESK 67 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555554443
No 74
>PHA03065 Hypothetical protein; Provisional
Probab=75.81 E-value=73 Score=30.11 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHH-----HHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHH
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVSRDHNSY-----KKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Y-----k~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~ 154 (199)
..|..-+.+.+++..+..-+|.+++ +| ..-|+.++..+|..++++--+|+|..-|.+.| +...|.+. .
T Consensus 111 ~~ld~~d~~yEEikt~~~lrI~Kl~----F~~fLa~~~nlk~~l~~~L~~~~~~v~I~yCdgvDAEfv--MC~~ak~~-a 183 (438)
T PHA03065 111 KNLDVDDEMYEEIKTDLELKIDKLS----FQLFLANSNNLKRLLESALARLGENVEIVYCDGVDAEFV--MCARAKEL-A 183 (438)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHH----HHHHHcchhhHHHHHHHHHHhccCCceEEEECCcchhHH--HHHHHHHH-H
Confidence 5556666677777777777776643 22 35789999999999998877999999999988 44444443 3
Q ss_pred HHhCCCCCeEeeccc
Q 029081 155 QKLQVHPPEIIVDHH 169 (199)
Q Consensus 155 ~~~~~~~~~i~id~~ 169 (199)
..+|.=+.=|+-|.+
T Consensus 184 ~~~g~WPl~iStDQD 198 (438)
T PHA03065 184 ATTGEWPLLISTDQD 198 (438)
T ss_pred hhcCCCceEEeccCC
Confidence 466754344555543
No 75
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=74.47 E-value=45 Score=27.12 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhccChhHH
Q 029081 39 EKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA--------ASKEVLNVSRDHNSY 110 (199)
Q Consensus 39 EK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~--------a~~kL~~l~~~~~~Y 110 (199)
+-..|+.+.+.......+....++..+ .+..+.++|..+-..|...+..+..+ |.+-|..- -|+..+
T Consensus 94 ea~~Ii~~A~~~a~~~~e~~~~~a~~e----a~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~-l~~~~~ 168 (184)
T PRK13455 94 QADRIVAAAKDEAQAAAEQAKADLEAS----IARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQ-MTAADA 168 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHHH
Confidence 444666665555555555555554433 44555666666666665555555443 33333332 244456
Q ss_pred HHHHHHHHHH
Q 029081 111 KKLLKGLIVQ 120 (199)
Q Consensus 111 k~lL~~LI~q 120 (199)
..++...|.+
T Consensus 169 ~~lid~~i~~ 178 (184)
T PRK13455 169 NALIDEAIKE 178 (184)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 76
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=74.44 E-value=54 Score=28.02 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (199)
Q Consensus 5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~k 57 (199)
+...+...|++--..+|+...++|...|.++.+ ++..+....|..+-.+
T Consensus 68 ~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~ 116 (246)
T TIGR03321 68 ELDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAA 116 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345566666666666666666777777777776 6666655555554433
No 77
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=72.55 E-value=64 Score=28.03 Aligned_cols=51 Identities=8% Similarity=0.095 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029081 110 YKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (199)
Q Consensus 110 Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (199)
+..-|..|+......+. + .....|..++..++.++..... +...+.|.+++
T Consensus 164 ~e~elv~Lal~iaekvi-~----~~~~~~~~~i~~li~~al~~l~---~~~~i~I~V~p 214 (281)
T PRK06669 164 SEEEIVELALDIAKKVI-K----EISENSKEIALALVKELLKEVK---DATDITIRVNP 214 (281)
T ss_pred HHHHHHHHHHHHHHHHH-H----HHhccCHHHHHHHHHHHHHHcC---cCCcEEEEECH
Confidence 34445566665555443 2 1222466666677776655543 22225665554
No 78
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=71.40 E-value=36 Score=27.75 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=28.8
Q ss_pred hcCCCceEE-EeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 124 RLKEPAVLL-RCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 124 ~L~e~~v~V-~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
..+.-.++| .+.|=+-+..+.+.... .+.+|.. +.+.. ...| + .+||+++.-++
T Consensus 105 ~~~~~~~~V~sA~~Ls~~~~~~i~~~l----~~~~g~~---v~l~~--~vDp----------s--lIGGi~i~~gd 159 (179)
T PRK13436 105 KLNITYGEIYTTEPLSEVQISRFESKL----SKKLNKK---VHLVN--KIDP----------K--LIAGIKIKVDN 159 (179)
T ss_pred HcCeEEEEEEecCCCCHHHHHHHHHHH----HHHHCCe---EEEEe--ecCH----------H--HcCceEEEECC
Confidence 333334433 35666666555555544 5566653 33321 2211 4 89999997654
No 79
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=68.66 E-value=51 Score=25.31 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=45.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 029081 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEYERKEKQVEIRKKIEYSMQLNAS 77 (199)
Q Consensus 1 m~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k---I~~~~~kk~k~~e~~k~I~~S~~~n~~ 77 (199)
|++.+|-+.|. .|+..|++....|.++.+ ++|...+.+ |.+.++...++ . .-.+++.+
T Consensus 3 m~~~Evl~eIk--------~aE~~ad~~IeeAkEe~~----~~i~eAr~eareiieeaE~eA~~---~----~~e~l~~~ 63 (108)
T COG2811 3 MDDSEVLREIK--------KAEISADEEIEEAKEEAE----QIIKEAREEAREIIEEAEEEAEK---L----AQEILEEA 63 (108)
T ss_pred ccHHHHHHHHH--------HHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHH
Confidence 45566666555 355555555555555555 555443333 33333332222 1 23456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029081 78 RIKVLQAQDDLVSNMMEAASKEVLN 102 (199)
Q Consensus 78 Rl~~L~ar~~~l~~l~~~a~~kL~~ 102 (199)
|-+....+++++.+--..+..=+.+
T Consensus 64 ~ee~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 64 REEAEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788877777666666555554
No 80
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=68.58 E-value=51 Score=25.29 Aligned_cols=52 Identities=10% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029081 47 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLN 102 (199)
Q Consensus 47 ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~kL~~ 102 (199)
+-.....+|+.++.++..+ .+.+++.+|...-..++.++.....++...+..
T Consensus 54 ea~~~~~~~e~~L~~a~~e----a~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~ 105 (140)
T PRK07353 54 EAEKLEAQYEQQLASARKQ----AQAVIAEAEAEADKLAAEALAEAQAEAQASKEK 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665533 556666666666666666666655555555544
No 81
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=68.44 E-value=48 Score=24.85 Aligned_cols=8 Identities=50% Similarity=0.713 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 029081 54 EYERKEKQ 61 (199)
Q Consensus 54 ~~~kk~k~ 61 (199)
+|+.++.+
T Consensus 55 e~~~~l~~ 62 (132)
T PF00430_consen 55 EYEEKLAE 62 (132)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 82
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.37 E-value=65 Score=26.36 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHH
Q 029081 138 DHHLVESVLESA 149 (199)
Q Consensus 138 D~~lV~~~l~~~ 149 (199)
|.+.|...+..+
T Consensus 167 ~~~~~~~~v~~~ 178 (181)
T PRK13454 167 DAAAVDAAVAQR 178 (181)
T ss_pred CHHHHHHHHHHH
Confidence 555555555543
No 83
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=68.35 E-value=62 Score=26.17 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029081 16 FIRQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 16 fI~~EA~eKA~EI~~kAeeE~e 37 (199)
-.+.+|+.+|.+|...|.+..+
T Consensus 63 ~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 63 AQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666
No 84
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=68.22 E-value=62 Score=26.09 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhccChhHHHH
Q 029081 41 LQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS--------NMMEAASKEVLNVSRDHNSYKK 112 (199)
Q Consensus 41 ~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~--------~l~~~a~~kL~~l~~~~~~Yk~ 112 (199)
..|+...+.......+....++..+ ....+..+|..+-..+...+. -.+.-|.+-|.... |++....
T Consensus 87 ~~ii~~A~~~a~~~~~~~~~~A~~e----a~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l-~~~~~~~ 161 (175)
T PRK14472 87 DKIIREGKEYAEKLRAEITEKAHTE----AKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSL-DADKQKK 161 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHH
Confidence 3566555555555444444443322 223333444444444444333 33333444443332 3334544
Q ss_pred HHHHHH
Q 029081 113 LLKGLI 118 (199)
Q Consensus 113 lL~~LI 118 (199)
++...|
T Consensus 162 li~~~i 167 (175)
T PRK14472 162 VVDSMI 167 (175)
T ss_pred HHHHHH
Confidence 444444
No 85
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=65.73 E-value=81 Score=26.50 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 029081 46 AEKKKIRQEYERKEKQVEIR 65 (199)
Q Consensus 46 ~ek~kI~~~~~kk~k~~e~~ 65 (199)
.+-.+...+|+..+.++..+
T Consensus 101 ~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 101 QEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555433
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=65.71 E-value=89 Score=27.00 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029081 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60 (199)
Q Consensus 6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k 60 (199)
...+...|++-...+|+...++|..+|.++.+ ++..+....|..+..+-..
T Consensus 69 a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~ 119 (250)
T PRK14474 69 LEQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFK 119 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666 6665555555554444333
No 87
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=63.93 E-value=72 Score=25.29 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029081 75 NASRIKVLQAQDDLVSNM 92 (199)
Q Consensus 75 n~~Rl~~L~ar~~~l~~l 92 (199)
..+|-.+-..|...++++
T Consensus 121 ~~a~~~i~~ek~~a~~~l 138 (156)
T CHL00118 121 NEATKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444333333
No 88
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=63.10 E-value=70 Score=24.87 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHH
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~ 147 (199)
.+-..+..++..+...+..-+..+... .|+..+.+...+++..+ ..++-..++.
T Consensus 102 ~l~~~~~~~~~~i~~~i~~~v~~~a~~-------------~g~~~Vl~~~~vly~~~-~~DIT~~Vi~ 155 (158)
T PF03938_consen 102 QLQQEEQELLQPIQKKINKAVEEYAKE-------------NGYDLVLDKNAVLYADP-AYDITDEVIK 155 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------TT-SEEEEGGGEEEE-T-TSE-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------cCCeEEEeCCceEeeCC-CCChHHHHHH
Confidence 444455555555555554444443321 44445555555677766 3444444443
No 89
>PRK12704 phosphodiesterase; Provisional
Probab=62.37 E-value=1.5e+02 Score=28.50 Aligned_cols=18 Identities=44% Similarity=0.479 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029081 19 QEAEEKANEISVSAEEEF 36 (199)
Q Consensus 19 ~EA~eKA~EI~~kAeeE~ 36 (199)
.+|+.+|++|...|..+.
T Consensus 34 ~~Ae~eAe~I~keA~~eA 51 (520)
T PRK12704 34 KEAEEEAKRILEEAKKEA 51 (520)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 90
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=61.54 E-value=94 Score=25.82 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 15 RFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (199)
Q Consensus 15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~i 43 (199)
..-...|+.+|..|...|..+.+..+...
T Consensus 26 ~~~~~~A~~~A~~i~~~A~~eAe~~~ke~ 54 (201)
T PF12072_consen 26 RKKLEQAEKEAEQILEEAEREAEAIKKEA 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777776544333
No 91
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=59.53 E-value=68 Score=23.60 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029081 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE 63 (199)
Q Consensus 10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e 63 (199)
..+.-.-|..+|+.....+...|..+++ ..+..-+.+....|.....+..
T Consensus 12 AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~~~~~~~ 61 (105)
T PF03179_consen 12 AEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKEKEAEAE 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667888888888888888888888 6666666667777766655554
No 92
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=57.68 E-value=1e+02 Score=24.95 Aligned_cols=30 Identities=3% Similarity=0.034 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 70 YSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (199)
Q Consensus 70 ~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~k 99 (199)
....+..+|..+-..|...+.+|..++-.=
T Consensus 98 a~r~~~~A~~~Ie~Ek~~Al~elr~eva~L 127 (154)
T PRK06568 98 LEHKKSDAIQLIQNQKSTASKELQDEFCDE 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777776666443
No 93
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=56.54 E-value=49 Score=21.11 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=34.2
Q ss_pred ceEEEecc-ccHHHHHHHHHHHHHHHHHHhCCCC--CeEeeccccCCCCCCCCCCCCCCCCccccceEE
Q 029081 129 AVLLRCRK-DDHHLVESVLESAKEEYAQKLQVHP--PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSR 194 (199)
Q Consensus 129 ~v~V~cr~-~D~~lV~~~l~~~~~~y~~~~~~~~--~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl 194 (199)
-+.|++.+ ++.+--+.+...+.....+.+|.+. +.|.|.. .|++ +| ..||+.+
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e---~~~~---------~~-~~gg~~~ 57 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDE---MPKE---------NW-GIGGESA 57 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE---eCch---------hc-eECCEEC
Confidence 35566554 5777777888888888888888653 3445542 3331 34 6799875
No 94
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=56.27 E-value=1e+02 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCceEEEeccccHHHHHHHHH
Q 029081 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (199)
Q Consensus 115 ~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~ 147 (199)
.+|..+...++.+.++ -...+..+|...|.
T Consensus 129 ~~la~~~a~kil~~~l---~~~~~~~li~~~i~ 158 (164)
T PRK14473 129 ADLVTLTASRVLGAEL---QARGHDALIAESLA 158 (164)
T ss_pred HHHHHHHHHHHHHhHc---CHHHHHHHHHHHHH
Confidence 3444455555555543 12334445555554
No 95
>PRK12705 hypothetical protein; Provisional
Probab=55.84 E-value=2e+02 Score=27.79 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNV 103 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l 103 (199)
+.|..+..-++....+....|..+
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 112 KALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444
No 96
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.84 E-value=24 Score=24.50 Aligned_cols=10 Identities=20% Similarity=0.249 Sum_probs=8.9
Q ss_pred cccceEEecC
Q 029081 188 CRGGFSRWED 197 (199)
Q Consensus 188 ~~GGvvl~~~ 197 (199)
..|||||.++
T Consensus 36 ~~GGvV~eDg 45 (62)
T PF15513_consen 36 LTGGVVMEDG 45 (62)
T ss_pred EeccEEEeCC
Confidence 7899999876
No 97
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=54.80 E-value=64 Score=21.78 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHH
Q 029081 87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146 (199)
Q Consensus 87 ~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l 146 (199)
..|..+|......|..+|++. .|+.....|+.+=|..+.+ ..|++.++..|
T Consensus 5 ~~L~~lY~~~L~~L~~~P~~a-~YR~~tE~it~~Rl~iv~~--------~~d~~~iE~~i 55 (57)
T PF04716_consen 5 EALISLYNKTLKALKKIPEDA-AYRQYTEAITKHRLKIVEE--------EEDIEKIEKKI 55 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHc--------cccHHHHHHHh
Confidence 346778999999999999885 8999999999998877655 45777666544
No 98
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=53.76 E-value=20 Score=29.34 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=8.8
Q ss_pred cccceEEecCC
Q 029081 188 CRGGFSRWEDS 198 (199)
Q Consensus 188 ~~GGvvl~~~~ 198 (199)
.+||+++.-++
T Consensus 145 LIGG~ii~igd 155 (184)
T PRK13434 145 LLGGFVVQFND 155 (184)
T ss_pred HcCceEEEECC
Confidence 89999987543
No 99
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=51.59 E-value=1.4e+02 Score=24.91 Aligned_cols=25 Identities=8% Similarity=0.217 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 70 YSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 70 ~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
....+.++|..+-..+...+..+..
T Consensus 142 ae~ii~~A~~~Ie~Ek~~a~~~Lk~ 166 (205)
T PRK06231 142 ANLIIFQARQEIEKERRELKEQLQK 166 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 100
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=50.93 E-value=1.1e+02 Score=23.53 Aligned_cols=77 Identities=12% Similarity=0.223 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccChhHHH
Q 029081 39 EKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS-------KEVLNVSRDHNSYK 111 (199)
Q Consensus 39 EK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~-------~kL~~l~~~~~~Yk 111 (199)
+-..|+.+.+......++....++... ....+..++..+-..|...+..+...+. .+|..-.-|+..+.
T Consensus 62 ea~~i~~~a~~~a~~~~~~~~~~a~~e----~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~~l~~~~~~ 137 (147)
T TIGR01144 62 EAQEIIENANKRGSEILEEAKAEAREE----REKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERNIDKQAQK 137 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 334777776666666666555554433 3344445555555555555444443332 22222222444566
Q ss_pred HHHHHHHH
Q 029081 112 KLLKGLIV 119 (199)
Q Consensus 112 ~lL~~LI~ 119 (199)
.++...|.
T Consensus 138 ~lid~~i~ 145 (147)
T TIGR01144 138 DLIDKLVA 145 (147)
T ss_pred HHHHHHHh
Confidence 66666553
No 101
>PRK09098 type III secretion system protein HrpB; Validated
Probab=50.19 E-value=1.6e+02 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (199)
Q Consensus 9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~ 53 (199)
++..=..-|+..|+++|++|...|.++.+ .|+++...+-+.
T Consensus 36 ~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~ 76 (233)
T PRK09098 36 AVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44555677899999999999999999999 888776665443
No 102
>PRK15322 invasion protein OrgB; Provisional
Probab=47.89 E-value=1.8e+02 Score=24.91 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 029081 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (199)
Q Consensus 12 ~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~ 91 (199)
+-..-+.+.|+.+|.+|...|++|.+ .|-..... ..|...+.++-.. +...+-..=.-+.+++.+
T Consensus 12 ~~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~~---~GYq~Gl~qa~~~--------la~~~a~~~~l~~~l~~~ 76 (210)
T PRK15322 12 FSAERLEQQARRRAKRILRQAEEEAE----TLRMYAYQ---EGYEQGMIDALQQ--------VAAYLTDNQTMAWKWMEK 76 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999988 66544333 6777776664422 111122222233467777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC
Q 029081 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP 128 (199)
Q Consensus 92 l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~ 128 (199)
|-..++.-|.....+| .+|-.++.+=+.++..+
T Consensus 77 ie~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~ 109 (210)
T PRK15322 77 IQIYARELFSAAVDHP----ETLLTVLDEWLRDFDKP 109 (210)
T ss_pred HHHHHHHHHHHHccCH----HHHHHHHHHHHHhCccc
Confidence 7777777777776666 46666666655555444
No 103
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=46.13 E-value=1.6e+02 Score=23.71 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
.|+.+.+.......+....++.- .....+..++..+-..+...+.++..++
T Consensus 89 ~ii~~a~~~a~~~~~~~~~~A~~----e~~~~~~~a~~~i~~e~~~a~~~l~~qi 139 (174)
T PRK07352 89 RIRADAKARAEAIRAEIEKQAIE----DMARLKQTAAADLSAEQERVIAQLRREA 139 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544444444444333333331 1334444555555555555555554444
No 104
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=44.92 E-value=2.1e+02 Score=24.94 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEE-EeccccHHHHHHHHHHHHHHHHHHhCCCCCeE--eeccccCCCCCCCCCCCCCCCC
Q 029081 110 YKKLLKGLIVQSLLRLKEPAVLL-RCRKDDHHLVESVLESAKEEYAQKLQVHPPEI--IVDHHIYLPPGPGHHNAHGPSW 186 (199)
Q Consensus 110 Yk~lL~~LI~q~l~~L~e~~v~V-~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i--~id~~~~L~~~~~~~~~~~~~~ 186 (199)
+..++..+.......-+.-.++| ...|=+-+-.+.+... +.+.+|.+ +.+ .||+ +
T Consensus 183 l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~----L~k~~g~~-V~l~~~VDp----------------s- 240 (271)
T PRK13430 183 IEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAA----LSRIYGRP-VHLNSEVDP----------------S- 240 (271)
T ss_pred HHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHH----HHHHHCCc-eEEEeeECc----------------c-
Confidence 44444444444444444443433 3455555555444444 45566754 333 3332 4
Q ss_pred ccccceEEecC
Q 029081 187 RCRGGFSRWED 197 (199)
Q Consensus 187 ~~~GGvvl~~~ 197 (199)
.+||+++.-.
T Consensus 241 -LIGGivI~vG 250 (271)
T PRK13430 241 -VLGGMRVQVG 250 (271)
T ss_pred -ccCcEEEEEC
Confidence 8999998743
No 105
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=44.01 E-value=1.2e+02 Score=23.03 Aligned_cols=42 Identities=7% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029081 47 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (199)
Q Consensus 47 ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~ 90 (199)
|+++..++-+++.+..+-.++-..|+...+.|| |+.++.++-
T Consensus 51 ER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~ 92 (121)
T PF10669_consen 51 ERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMK 92 (121)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHH
Confidence 566666666777777666666667777776666 666666553
No 106
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=43.70 E-value=67 Score=20.94 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=35.3
Q ss_pred eEEEec--cccHHHHHHHHHHHHHHHHHHhCCCC--CeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 130 VLLRCR--KDDHHLVESVLESAKEEYAQKLQVHP--PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 130 v~V~cr--~~D~~lV~~~l~~~~~~y~~~~~~~~--~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
+.|++- ..+.+--+.++..+.......+|.+. +.|.|. .+|++ +| ..||..+.
T Consensus 3 i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~---e~~~~---------~w-~~gG~~~~ 59 (63)
T TIGR00013 3 VNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIID---EMPKN---------NY-GIGGELVS 59 (63)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEE---EcCHH---------He-eECCEEhh
Confidence 455555 36888888899999999998998753 344454 23331 45 56898765
No 107
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=43.26 E-value=74 Score=20.61 Aligned_cols=55 Identities=7% Similarity=0.192 Sum_probs=36.1
Q ss_pred ceEEEecc-ccHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEec
Q 029081 129 AVLLRCRK-DDHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWE 196 (199)
Q Consensus 129 ~v~V~cr~-~D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~ 196 (199)
-+.|.+.+ ++.+--+.++..+...+.+.+|.+ .+.|.+.. .|+. +| ..||..+..
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e---~~~~---------~~-~~gG~~~~~ 60 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKNTGAPAEHIHVIINE---MSKN---------HY-AVGGKRLSD 60 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE---eChh---------He-EECCEECCC
Confidence 34566554 677777888888888888898875 24555542 3331 34 679988754
No 108
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=42.45 E-value=72 Score=20.75 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=36.6
Q ss_pred CceEEEecc-ccHHHHHHHHHHHHHHHHHHhCCCC--CeEeeccccCCCCCCCCCCCCCCCCccccceEEec
Q 029081 128 PAVLLRCRK-DDHHLVESVLESAKEEYAQKLQVHP--PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWE 196 (199)
Q Consensus 128 ~~v~V~cr~-~D~~lV~~~l~~~~~~y~~~~~~~~--~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~ 196 (199)
|-|.|+|.+ ++.+.-+.+...+.....+.+|.+. +.|.|.. .|++ +| ..||..+..
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e---~~~~---------~w-~~gG~~~~~ 60 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITD---VKRE---------NW-ATGGKLWSD 60 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEE---cChH---------He-eECCEEcCc
Confidence 446677665 6788888888888888888888653 3444432 3331 45 568887653
No 109
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=42.03 E-value=98 Score=23.83 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 2 NDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 2 ~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~e 37 (199)
+|.++..-+..+.+.++.+|..||..|-.+=..|.+
T Consensus 12 ~d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk 47 (109)
T PHA02571 12 TDEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 566677888888888888888888888777666655
No 110
>PRK10780 periplasmic chaperone; Provisional
Probab=41.44 E-value=1.8e+02 Score=23.17 Aligned_cols=121 Identities=12% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029081 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (199)
Q Consensus 5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~a 84 (199)
.++.+++...+....+-+.+..++...+++ |..+-+.+=..++.....++..+.. +.+++ ...........
T Consensus 43 ~~~~~le~~~~~~q~el~~~~~elq~~~~~-~q~~~~~ms~~~~~~~~~el~~~~~--~~q~~------~~~~qq~~~~~ 113 (165)
T PRK10780 43 GVSKQLENEFKGRASELQRMETDLQAKMQK-LQRDGSTMKGSDRTKLEKDVMAQRQ--TFSQK------AQAFEQDRRRR 113 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCHHHHHHHHHHHHHHHH--HHHHH------HHHHHHHHHHH
Confidence 345666666666666666666666644432 3322222222222222222221111 11111 11111223345
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (199)
Q Consensus 85 r~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~ 148 (199)
+.++++.++..+.+-+..+.... .|.-+| +...+|+.++. .++-..++..
T Consensus 114 ~~e~~~~i~~ki~~ai~~vak~~-gy~~Vl------------d~~~v~Y~~~~-~DIT~~Vik~ 163 (165)
T PRK10780 114 SNEERNKILTRIQTAVKSVANKQ-GYDLVV------------DANAVAYNSSD-KDITADVLKQ 163 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCeEEE------------eCCceeeeCCC-CCchHHHHHh
Confidence 56666777777766666665432 344332 23347777765 5555555543
No 111
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=41.05 E-value=41 Score=27.66 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHh----hccChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHHHHHHHHHHHHH
Q 029081 83 QAQDDLVSNMMEAAS-KEVLN----VSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQ 155 (199)
Q Consensus 83 ~ar~~~l~~l~~~a~-~kL~~----l~~~~~~Yk~lL~~LI~q~l~~L~--e~~v~V~cr~~D~~lV~~~l~~~~~~y~~ 155 (199)
+.|.++|..++...- .-+.+ +..+ .+-.+|...+.+...... .+.+.+.+-- =.++=..-+....+...+
T Consensus 57 ~~k~~li~~i~~~~~~~~~~nfL~ll~en--~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~S-A~~Ls~~q~~~l~~~l~k 133 (178)
T COG0712 57 EDKKELLISIFKKIGDPLLQNFLRLLAEN--KRLNLLPEILEEFLKLAAESRGIVEAEVTS-AFELSDEQLTKLEAKLEK 133 (178)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHhcCceEEEEEE-cCCCCHHHHHHHHHHHHH
Confidence 456667777776554 22222 2333 455555555554443222 3332222211 112223344444555566
Q ss_pred HhCCCCCeE--eeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 156 KLQVHPPEI--IVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 156 ~~~~~~~~i--~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
.+|.+ +++ .||+ + .+||+++...+
T Consensus 134 ~~~~~-v~i~~~VD~----------------s--liGG~iI~vgd 159 (178)
T COG0712 134 KFGKK-VKLNNKIDP----------------S--LIGGLIIKVGD 159 (178)
T ss_pred HhCCC-ceEEeeeCH----------------H--HhCceEEEECC
Confidence 66654 344 3332 4 89999987654
No 112
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=41.05 E-value=1.7e+02 Score=22.74 Aligned_cols=108 Identities=13% Similarity=0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (199)
Q Consensus 21 A~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~kL 100 (199)
+-.+|.+|...|.++.+ +|+.+...+....++.... +=++..+.++...+
T Consensus 11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~~~~~g~~--------------------------~G~~~g~~e~~~~~ 60 (166)
T TIGR02499 11 ALAQAQAILAAARQRAE----AILADAEEEAEASRQLGYE--------------------------QGLEQFWQEAAAQL 60 (166)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHH
Confidence 34489999999999998 8887766544332111111 11111111111111
Q ss_pred HhhccCh----hHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029081 101 LNVSRDH----NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (199)
Q Consensus 101 ~~l~~~~----~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (199)
..+.... ..-..-+..|+.+++.++.... .|-+++..++..+...... ...++|.+++
T Consensus 61 ~~~~~~~~~~~~~~e~~l~~l~~~~~~kil~~~-------~~~e~l~~lv~~al~~~~~---~~~v~I~v~P 122 (166)
T TIGR02499 61 AEWQQEAEQLEASLEERLAELVLQALEQILGEY-------DEPERLVRLLRQLLRAVAN---QGRLTLRVHP 122 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHHhCCC---CCceEEEECH
Confidence 1111100 1234556678888888887763 5567777888877666543 2225666654
No 113
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=40.88 E-value=2.1e+02 Score=23.62 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHH-----HHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 029081 91 NMMEAASKEVLNVSRDHNSYKKLLKGLIV-----QSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (199)
Q Consensus 91 ~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~-----q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~ 165 (199)
+...+|.++|..+.... .....+.+||. .|+..+.++.+.|.|....+. ..-...........+|.+...|+
T Consensus 118 ~~k~~A~~~~~~l~~~~-~kE~~iE~llkakGf~davv~~~~~~v~VvV~~~~L~--~~~~~~I~diV~~~~~v~~~~I~ 194 (196)
T PF12685_consen 118 EEKKEAQDKLLELTEKM-EKEMEIENLLKAKGFEDAVVFIEDDSVDVVVKADKLS--DAEAAQIIDIVMRETGVPAENIS 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTS-SEEEEE-SSSEEEEEEE-S-----HHHHHHHHHHHHHHHC-STSEEE
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCceEEEeeCCEEEEEEeCCCCC--HHHHHHHHHHHHHHhCCCcCeEE
Confidence 34456777777776543 46666777776 345667788888888876633 33444445555667775544555
Q ss_pred e
Q 029081 166 V 166 (199)
Q Consensus 166 i 166 (199)
|
T Consensus 195 V 195 (196)
T PF12685_consen 195 V 195 (196)
T ss_dssp E
T ss_pred e
Confidence 4
No 114
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=39.83 E-value=1.7e+02 Score=22.47 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE--RKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (199)
Q Consensus 20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~--kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~ 97 (199)
.|+..|.+|...|.+.-. +-+.+.+.....+.+ +..+..+.++... .-+.-....-.++=.++.
T Consensus 13 ~AE~eA~~IV~~AR~~r~----~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea----------~~~g~~~~~~~~l~~et~ 78 (113)
T TIGR01147 13 QAEKRAAEKVSEARKRKT----KRLKQAKEEAQKEVEKYKQQREKEFKEFEA----------KHLGGNGAAEEKAEAETQ 78 (113)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCCcchHHHHHHHHHH
Confidence 488888888888885432 444444433222221 1122233333222 122333455666777788
Q ss_pred HHHHhhccChhHHHHHHHHHHHHHHHhcC
Q 029081 98 KEVLNVSRDHNSYKKLLKGLIVQSLLRLK 126 (199)
Q Consensus 98 ~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~ 126 (199)
.+|..+-..-...+.-+.++++..++-+.
T Consensus 79 ~ki~~ik~~~~~~~~~Vv~~Ll~~V~~v~ 107 (113)
T TIGR01147 79 AKIREIKKAVQKNKDAVIKDLLHLVCDIS 107 (113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 88887755545666666677776665554
No 115
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=38.82 E-value=2e+02 Score=22.97 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (199)
Q Consensus 42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~ 97 (199)
.|+.+.+.......+....+++.. ..+....+...+-..+++.+++|-..+.
T Consensus 76 ~Ii~~A~~~a~~~~~e~~~~a~~e----~~r~~~~a~~~I~~e~~~a~~~l~~~~~ 127 (161)
T COG0711 76 EIIEQAKKEAEQIAEEIKAEAEEE----LERIKEAAEAEIEAEKERALEELRAEVA 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444433333322 3333444444555555555555554443
No 116
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=36.03 E-value=69 Score=25.65 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=29.1
Q ss_pred CCceEEEeccccHHHHHHHHHHHHHHHHHHhCC
Q 029081 127 EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159 (199)
Q Consensus 127 e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~ 159 (199)
...++|.|-..+..+++.+|.+|...|.+....
T Consensus 127 ~e~l~l~~lg~s~~~l~~ll~ear~~~~~~~~~ 159 (187)
T PF08740_consen 127 DETLTLSCLGRSPKPLKDLLEEAREYYLKKQKG 159 (187)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 458899999999999999999999999766554
No 117
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=35.52 E-value=2.4e+02 Score=22.85 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHH
Q 029081 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA 149 (199)
Q Consensus 115 ~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~ 149 (199)
..|.+++..++.+..+ -...+..+|...+..+
T Consensus 145 ~~lav~~A~kil~~~l---d~~~~~~lid~~i~~l 176 (184)
T CHL00019 145 FQLALQRALGTLNSCL---NNELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHhHc---CHHHHHHHHHHHHHHH
Confidence 3444455555555432 2233444555555544
No 118
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=34.44 E-value=2.3e+02 Score=22.28 Aligned_cols=27 Identities=4% Similarity=0.186 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 70 YSMQLNASRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 70 ~S~~~n~~Rl~~L~ar~~~l~~l~~~a 96 (199)
....+..++..+-..+...+..+..++
T Consensus 99 a~~~~~~a~~~i~~e~~~a~~~l~~ei 125 (159)
T PRK13461 99 ADLIIERAKLEAQREKEKAEYEIKNQA 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444
No 119
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=34.11 E-value=1.2e+02 Score=25.85 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 029081 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (199)
Q Consensus 23 eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k 66 (199)
+...+|..+..++ +..|..|+.+.+..|...|.....+.+..+
T Consensus 120 ~~~~~i~ekD~~e-~~kk~e~~~~A~k~lddfY~~~~~k~e~~k 162 (225)
T PF01086_consen 120 ERDKRIEEKDAEE-EEKKEEIKEKAKKELDDFYENRNEKKEKNK 162 (225)
T ss_dssp HHTTTSTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565554444 457888999999999999998887777543
No 120
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=33.98 E-value=1.5e+02 Score=20.00 Aligned_cols=40 Identities=18% Similarity=0.470 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
-|.+.++....--++|-.||...-..||+ +|+.+....+.
T Consensus 8 ~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~----kiLk~r~~~lE 47 (56)
T PF08112_consen 8 TIDKYISILKSKLDEKKSEILSNLNMEYE----KILKQRRKELE 47 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 46777888888889999999988888887 88877666555
No 121
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=32.83 E-value=3.3e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (199)
Q Consensus 8 ~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k 50 (199)
.+..-...-++.+|..+++|+..+--..|+.|+.......+..
T Consensus 80 ~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~ 122 (424)
T KOG2880|consen 80 PEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKN 122 (424)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 3455566677799999999999999999999988888665554
No 122
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=32.31 E-value=82 Score=25.49 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=23.6
Q ss_pred eccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081 134 CRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS 198 (199)
Q Consensus 134 cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~ 198 (199)
+.|=|-+..+.+.. ..++.+|.. +.+..+. + -+||+++.-++
T Consensus 111 A~~Ls~~q~~~i~~----~l~~~~g~~-v~l~~~v----------------D--~IGG~ii~igd 152 (176)
T PRK08474 111 NEKLSEETLKKLEE----KLSKKFNAK-IKLKQKK----------------S--DYDGIKVEVDD 152 (176)
T ss_pred CccCCHHHHHHHHH----HHHHHhCCe-EEEEEEE----------------c--CCCCEEEEECC
Confidence 45556554444444 445567754 4444332 3 27999987654
No 123
>PRK12705 hypothetical protein; Provisional
Probab=32.31 E-value=4.7e+02 Score=25.26 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (199)
Q Consensus 11 ~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~i 43 (199)
+....-..-+|++++...+..++++++..+..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 47 EEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555444433
No 124
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=30.51 E-value=3.7e+02 Score=23.55 Aligned_cols=102 Identities=19% Similarity=0.315 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHH--HhHHHHHHHHHH
Q 029081 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ--VEIRKKIE--YSMQLNASRIKV 81 (199)
Q Consensus 6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~--~e~~k~I~--~S~~~n~~Rl~~ 81 (199)
.|..|+...+||..++..-+ ...+++--|+..|..|- ...+..|.+..-. -|+++++. .+...+.+|
T Consensus 138 rq~~ik~i~d~id~~~sqq~--~~~~~~~lfd~~keni~----l~lE~~yre~~~~v~~E~K~~lDy~v~~e~~~rr--- 208 (247)
T KOG3976|consen 138 RQAHIKAISDAIDTEKSQQA--LASKTEYLFDVSKENIA----LQLEATYREQLVRVAKEVKRRLDYWVETEASKRR--- 208 (247)
T ss_pred HHHHHHHHHHHHhhHHHhHH--HHHHHHhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 35566777777777776655 44444445555554443 2222223222211 23333333 122233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 029081 82 LQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQS 121 (199)
Q Consensus 82 L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~ 121 (199)
..|+.++..|.....++... +..-...|.+.|.|.
T Consensus 209 -~eqe~l~ksI~~~veke~~~----k~fqd~~lq~~~~q~ 243 (247)
T KOG3976|consen 209 -LEQEQLLKSINSRVEKETSN----KKFQDKVLQASIQQI 243 (247)
T ss_pred -HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHh
Confidence 24677788888888777644 224445566655553
No 125
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=29.67 E-value=2.8e+02 Score=21.86 Aligned_cols=51 Identities=4% Similarity=0.177 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081 39 EKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (199)
Q Consensus 39 EK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~ 93 (199)
+...|+.+.+......+.....++.- .....+.+++..+-..+...+..+.
T Consensus 75 ea~~ii~~A~~~a~~~~~~~~~~A~~----ea~~~~~~a~~~i~~ek~~a~~~l~ 125 (164)
T PRK14471 75 ERDAILKEAREIKEKMIADAKEEAQV----EGDKMIEQAKASIESEKNAAMAEIK 125 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555444444444333333221 2333444444444444444444433
No 126
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=29.50 E-value=3e+02 Score=22.11 Aligned_cols=10 Identities=10% Similarity=-0.250 Sum_probs=8.1
Q ss_pred cccceEEecC
Q 029081 188 CRGGFSRWED 197 (199)
Q Consensus 188 ~~GGvvl~~~ 197 (199)
.+||+++.-+
T Consensus 148 liGG~~i~ig 157 (180)
T PRK13441 148 LIAGAVVEFE 157 (180)
T ss_pred HhCcEEEEEC
Confidence 8999998744
No 127
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=29.32 E-value=49 Score=26.20 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHhCCCCCeEeeccc-cCCCCC
Q 029081 152 EYAQKLQVHPPEIIVDHH-IYLPPG 175 (199)
Q Consensus 152 ~y~~~~~~~~~~i~id~~-~~L~~~ 175 (199)
.|+.-++.-.++|.||++ .+||+.
T Consensus 26 ~~kk~m~~~gIkV~Idkk~kilP~n 50 (132)
T PF15640_consen 26 NFKKEMGKRGIKVKIDKKDKILPEN 50 (132)
T ss_pred HHHHHHHhCCcEEEECCccCCCCcc
Confidence 345445543478999965 688863
No 128
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=29.07 E-value=62 Score=26.62 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHH------hcCC-CceE-EEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 029081 109 SYKKLLKGLIVQSLL------RLKE-PAVL-LRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 166 (199)
Q Consensus 109 ~Yk~lL~~LI~q~l~------~L~e-~~v~-V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~i 166 (199)
.-+.++++|+-=|-. ...+ ..++ |++.++|...+..=+...+.-|++.||.+ +.+.+
T Consensus 101 d~~~fl~Nl~~PA~V~gV~i~~~~dG~~~~kV~Vd~~Dk~~l~~k~e~~~~v~~kltgk~-v~~~f 165 (166)
T PRK06418 101 DIKKLAVQLLSPARVLGVNTVWLPDGTVQYVIRVSRRDRRRLPAKPELLESILSKITGTE-VKIRV 165 (166)
T ss_pred CHHHHHHhcCCCcEEEEEEEEEeCCCcEEEEEEECHHHhhcccccHHHHHHHHHHHHCCc-EEEEe
Confidence 456777777764332 1223 3555 89999999999999999999999999998 67654
No 129
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=28.60 E-value=2.8e+02 Score=21.48 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (199)
Q Consensus 42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~ 94 (199)
.|+.+........++..+.++..+ ....+..++..+-..+......+..
T Consensus 74 ~i~~~a~~ea~~~~~~~~~~a~~e----a~~~~~~a~~~i~~e~~~a~~~l~~ 122 (156)
T PRK05759 74 EIIEQAKKRAAQIIEEAKAEAEAE----AARIKAQAQAEIEQERKRAREELRK 122 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333322 3333344444444444444443333
No 130
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=26.45 E-value=3.4e+02 Score=21.70 Aligned_cols=21 Identities=10% Similarity=0.136 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029081 82 LQAQDDLVSNMMEAASKEVLN 102 (199)
Q Consensus 82 L~ar~~~l~~l~~~a~~kL~~ 102 (199)
+..+..-|+.-|.++.++|..
T Consensus 116 ~~~~~~~vdee~~~~~~~l~e 136 (145)
T PF14942_consen 116 QQQKKQRVDEEFREKEERLKE 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666
No 131
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=25.81 E-value=1.5e+02 Score=19.17 Aligned_cols=55 Identities=16% Similarity=0.381 Sum_probs=33.7
Q ss_pred CceEEEeccc-cHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 128 PAVLLRCRKD-DHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 128 ~~v~V~cr~~-D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
|-|.|+|.+. |.+.-+.++..+...+.+.+|.+ .+.|.|.. .|++ +| -.||..+.
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E---~~~~---------~w-~~gG~~~~ 58 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAVVEVLGIPPERISVVIEE---VPPE---------NW-GIGGKSLS 58 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEE---E-CC---------CE-EETTEETT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEE---EChh---------he-EECCEEcC
Confidence 3456777655 56666778888888888889975 24555553 3331 34 56887654
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.63 E-value=9.6e+02 Score=26.33 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=37.8
Q ss_pred hccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHH
Q 029081 103 VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQ 155 (199)
Q Consensus 103 l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~ 155 (199)
++.++ .--.-|.+=|.+.+.+|..=++++.=.+.|++.++.+..+|...-+.
T Consensus 1506 lp~tp-eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1506 LPLTP-EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSR 1557 (1758)
T ss_pred CCCCH-HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhH
Confidence 35544 33445667788888888877888888889999998888887665443
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.55 E-value=8.2e+02 Score=25.51 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 029081 39 EKLQLVE 45 (199)
Q Consensus 39 EK~~iv~ 45 (199)
|+.+.++
T Consensus 378 erQReiE 384 (1118)
T KOG1029|consen 378 ERQREIE 384 (1118)
T ss_pred HHHHHHH
Confidence 4444443
No 134
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=24.20 E-value=4.4e+02 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~e 37 (199)
|.++++-+++|+.. ++.++.....|+.+.+
T Consensus 148 p~~v~~a~~~~~~a-----~q~~~~~~~~ae~~~~ 177 (261)
T TIGR01933 148 PEEVKEAFDDVIIA-----REDEERYINEAEAYAN 177 (261)
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 35666677777663 3333444555544433
No 135
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=23.99 E-value=3.7e+02 Score=21.34 Aligned_cols=92 Identities=9% Similarity=0.068 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHhhccCh--hHHHHHHHHHHHHHHHhcCCCceEEE-eccccHHHHHHHHHHHHHHHHH
Q 029081 83 QAQDDLVSNMMEA----ASKEVLNVSRDH--NSYKKLLKGLIVQSLLRLKEPAVLLR-CRKDDHHLVESVLESAKEEYAQ 155 (199)
Q Consensus 83 ~ar~~~l~~l~~~----a~~kL~~l~~~~--~~Yk~lL~~LI~q~l~~L~e~~v~V~-cr~~D~~lV~~~l~~~~~~y~~ 155 (199)
+.|.++|+++|.. +..=|.-+..+. .....++..+........+.-.++|+ +.|-+-+..+.+...+ ..
T Consensus 56 ~~K~~~l~~~~~~~~~~~~nfL~~l~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l----~~ 131 (177)
T PRK05758 56 EQKKKLLAAVFKSLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAAL----EK 131 (177)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHH----HH
Confidence 4456667777653 222222223221 12333333333333333333344443 4566655555555444 44
Q ss_pred HhCCCCCeE--eeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 156 KLQVHPPEI--IVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 156 ~~~~~~~~i--~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
.+|.. +.+ ++|+ + .+||+++.-+
T Consensus 132 ~~~~~-v~l~~~vd~----------------~--ligG~~i~~~ 156 (177)
T PRK05758 132 RLGRK-VKLNEKVDP----------------S--LIGGVIIKVG 156 (177)
T ss_pred HHCCe-eEEEeeECh----------------H--HhCceEEEEC
Confidence 56653 222 2332 4 7899988744
No 136
>PRK06328 type III secretion system protein; Validated
Probab=23.56 E-value=4.5e+02 Score=22.21 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (199)
Q Consensus 19 ~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~ 98 (199)
..|-..|++|..+|.++++ +|+..-...+...++....+ =..+-+ ..-.+.+..+ ..
T Consensus 25 ~~~~~~A~~il~~a~~~ae----~i~~ea~~e~E~i~eeA~~e-----------Gy~eG~----~~~~~~~~~l----~~ 81 (223)
T PRK06328 25 FSALLDAQELLEKTKEDSE----AYTQETHEECEKLREEAKNQ-----------GFKEGS----KAWSKQLAFL----EE 81 (223)
T ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----------HHHHHH----HHHHHHHHHH----HH
Confidence 4566778999999999998 77766544444333221111 000000 0111222222 22
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecc
Q 029081 99 EVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (199)
Q Consensus 99 kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~ 168 (199)
.+..+. .....-|-.|......++...++ ..|-+.+-.++..+...... ...++|.|++
T Consensus 82 ~~~~~~---~~~e~~lv~Lal~ia~kVi~~el-----~~d~e~il~lV~~aL~~l~~---~~~v~I~VnP 140 (223)
T PRK06328 82 ETQKLR---EQVKEALVPLAIASVKKIIGKEL-----ELHPETIVSIIANSLKELTQ---HKRIIIHVNP 140 (223)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-----hhCHHHHHHHHHHHHHhccc---CCceEEEECH
Confidence 222221 13556778888888887765543 34556676777777666542 2225666653
No 137
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=23.28 E-value=1.6e+02 Score=20.43 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=30.1
Q ss_pred hcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCC
Q 029081 124 RLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159 (199)
Q Consensus 124 ~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~ 159 (199)
.+++....|.|.+.|.+.++++.......+.+....
T Consensus 5 ~I~G~~y~i~~~~~~ee~l~~~a~~i~~~i~~~~~~ 40 (89)
T PF05164_consen 5 TILGREYRIKCPDEDEEYLRKAAELINEKINEIKKK 40 (89)
T ss_dssp EETTEEEEECETGCGHHHHHHHHHHHHHHHHHHCTT
T ss_pred EECCEEEEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999888888776543
No 138
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=21.13 E-value=7.2e+02 Score=23.59 Aligned_cols=88 Identities=25% Similarity=0.272 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-hhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhC
Q 029081 80 KVLQAQDDLVSNMMEAASKEVLNVSRD-HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQ 158 (199)
Q Consensus 80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~-~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~ 158 (199)
..|..-+.+.+++..+..-++.+++=. ----..-++.++...|..++++-=+|+|..-|.+.| +...|.+.+. .+|
T Consensus 109 ~~ld~~d~~yeEikt~~~lki~K~~F~~fla~~~n~k~~l~~~L~~~~~~V~IvyCDgvDAEFv--MC~~Ak~~a~-~~g 185 (425)
T PF04599_consen 109 KNLDVDDEFYEEIKTDLELKIQKLSFQLFLANSNNLKTILESSLSRLKEDVEIVYCDGVDAEFV--MCARAKKLAA-KNG 185 (425)
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhccCCceEEEECCcChhHH--HHHHHHHHHH-hcC
Confidence 456667777888888888888775310 000124467778888888867766999999999998 5555555543 566
Q ss_pred CCCCeEeecccc
Q 029081 159 VHPPEIIVDHHI 170 (199)
Q Consensus 159 ~~~~~i~id~~~ 170 (199)
.=+.=|+-|.+.
T Consensus 186 ~WPlliStDQDt 197 (425)
T PF04599_consen 186 RWPLLISTDQDT 197 (425)
T ss_pred CCceEEeeccce
Confidence 533455555543
No 139
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=20.97 E-value=4.1e+02 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029081 77 SRIKVLQAQDDLVSNMMEAA 96 (199)
Q Consensus 77 ~Rl~~L~ar~~~l~~l~~~a 96 (199)
.+|+..+.+..+|+.++.+|
T Consensus 203 k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 203 KDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 35556666666666666555
No 140
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.1e+02 Score=26.81 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCCc--eEEEeccccHHHHHHHHHHHH
Q 029081 111 KKLLKGLIVQSLLRLKEPA--VLLRCRKDDHHLVESVLESAK 150 (199)
Q Consensus 111 k~lL~~LI~q~l~~L~e~~--v~V~cr~~D~~lV~~~l~~~~ 150 (199)
.++|..+|..|+.-+...+ +.|+|-|.|+..|+.+|..+-
T Consensus 150 d~l~e~~ieagaeDv~~~~~~~~V~t~p~~~~~V~~~L~~~g 191 (241)
T COG0217 150 DELLEAAIEAGAEDVEEDEGSIEVYTEPEDFNKVKEALEAAG 191 (241)
T ss_pred HHHHHHHHHCCchhhhcCCCeEEEEEChHHHHHHHHHHHHcC
Confidence 5788888888887766554 999999999999999998664
No 141
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.18 E-value=2.1e+02 Score=18.77 Aligned_cols=55 Identities=18% Similarity=0.381 Sum_probs=36.5
Q ss_pred CceEEEec-cccHHHHHHHHHHHHHHHHHHhCCCC--CeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 128 PAVLLRCR-KDDHHLVESVLESAKEEYAQKLQVHP--PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 128 ~~v~V~cr-~~D~~lV~~~l~~~~~~y~~~~~~~~--~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
|-|.|.+. .++.+.-+.++..+...+.+.+|.+. +.|.|. ..|+. +| ..||..+.
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~---e~~~~---------~w-~~gg~~~~ 59 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVN---EVPSS---------HW-GVAGVPKS 59 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEE---EcChH---------He-eECCEEHH
Confidence 33556653 46888888999999999999999763 455554 23331 34 67887654
Done!