Query 029081
Match_columns 199
No_of_seqs 129 out of 362
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 3.3E-46 1.1E-50 316.0 26.3 185 1-197 8-193 (233)
2 3v6i_A V-type ATP synthase sub 99.9 3.4E-21 1.2E-25 157.5 23.4 131 12-148 2-136 (187)
3 2dm9_A V-type ATP synthase sub 99.9 2.4E-22 8.1E-27 162.9 9.1 158 5-197 10-167 (198)
4 3lg8_A A-type ATP synthase sub 99.6 6.9E-17 2.4E-21 121.8 -2.3 73 108-197 3-76 (106)
5 2kk7_A V-type ATP synthase sub 95.8 0.04 1.4E-06 35.8 6.8 39 10-52 8-46 (52)
6 3v6i_A V-type ATP synthase sub 95.1 0.89 3E-05 36.0 14.2 96 6-101 7-115 (187)
7 2dm9_A V-type ATP synthase sub 91.9 0.047 1.6E-06 43.0 1.2 125 9-167 3-127 (198)
8 1l2p_A ATP synthase B chain; a 84.9 5.8 0.0002 25.5 9.5 20 18-37 4-23 (61)
9 2kk7_A V-type ATP synthase sub 81.9 1.4 4.8E-05 28.3 3.4 35 5-39 14-48 (52)
10 1l2p_A ATP synthase B chain; a 71.1 17 0.0006 23.1 9.4 47 11-57 8-54 (61)
11 2k6i_A Uncharacterized protein 66.4 13 0.00045 24.3 5.0 26 20-49 23-48 (56)
12 3m20_A 4-oxalocrotonate tautom 56.7 17 0.00058 23.0 4.3 55 128-195 1-57 (62)
13 4efa_E V-type proton ATPase su 52.8 88 0.003 25.1 18.7 127 19-166 15-141 (233)
14 3tdu_C Cullin-1, CUL-1; E2:E3, 43.0 52 0.0018 22.4 5.3 50 74-123 12-63 (77)
15 2k6i_A Uncharacterized protein 40.2 31 0.0011 22.5 3.5 24 14-37 28-51 (56)
16 4efa_G V-type proton ATPase su 37.9 88 0.003 23.1 6.2 29 20-52 17-45 (119)
17 3m91_A Proteasome-associated A 37.1 62 0.0021 20.5 4.5 29 76-104 15-43 (51)
18 3m21_A Probable tautomerase HP 35.3 60 0.002 20.6 4.4 54 129-195 2-61 (67)
19 3o2p_E Cell division control p 34.8 1.1E+02 0.0039 21.2 6.3 51 73-123 23-75 (88)
20 3ej9_A Alpha-subunit of trans- 32.3 55 0.0019 21.6 4.0 56 128-196 2-60 (76)
21 3mb2_A 4-oxalocrotonate tautom 25.4 64 0.0022 20.8 3.3 54 130-196 4-60 (72)
22 3ry0_A Putative tautomerase; o 25.2 75 0.0026 19.9 3.5 53 130-195 3-58 (65)
23 4etp_A Kinesin-like protein KA 25.2 1.9E+02 0.0064 25.4 7.2 15 123-137 55-70 (403)
24 1use_A VAsp, vasodilator-stimu 24.4 1.1E+02 0.0037 19.0 3.9 26 72-97 15-40 (45)
25 2xzm_3 RPS7E, 40S ribosomal pr 23.8 85 0.0029 25.4 4.2 37 130-167 151-187 (197)
26 2ns5_A Partitioning-defective 23.4 97 0.0033 21.7 4.0 42 125-167 9-51 (85)
27 3u5c_H RP30, RP40, 40S ribosom 21.9 73 0.0025 25.7 3.4 58 109-167 121-186 (190)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=3.3e-46 Score=316.01 Aligned_cols=185 Identities=31% Similarity=0.537 Sum_probs=174.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029081 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (199)
Q Consensus 1 m~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~ 80 (199)
|||+||++||++|++||++||++||+||..+|++||+++|.+++++++.+|+.+|++++++++++++|+.|++.|++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (199)
Q Consensus 81 ~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~ 160 (199)
+|.+|+++|+++|+.|+++|..++.|+..|+.+|.+||.||++.|++|+|+|+||+.|.++|+++++++..+|+..+|..
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999976
Q ss_pred CC-eEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 161 PP-EIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 161 ~~-~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
++ .+.++ ..|||++ + |+|||+|++.
T Consensus 168 ~~~~~~~~-~~~l~~~---------~--~~GGvil~s~ 193 (233)
T 4efa_E 168 PLEEIVIS-NDYLNKD---------L--VSGGVVVSNA 193 (233)
T ss_dssp CCCEEEEC-SSCCCTT---------T--CSSEEEEECT
T ss_pred Cccccccc-cccCCcc---------c--ccCceEEEEC
Confidence 43 34444 4677652 5 9999999864
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=99.89 E-value=3.4e-21 Score=157.52 Aligned_cols=131 Identities=13% Similarity=0.205 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHhHHHHHHHHHHHHHHHH
Q 029081 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR----KKIEYSMQLNASRIKVLQAQDD 87 (199)
Q Consensus 12 ~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~----k~I~~S~~~n~~Rl~~L~ar~~ 87 (199)
++.+.|..||+.+|++|...|+++.+ .|+.+.+.+....+....+.++.+ .....|+..+++|+++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999888888888 888887777766666655554433 4566899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES 148 (199)
Q Consensus 88 ~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~ 148 (199)
+++++|+.|+++|.+++.+ ..|+.+|.+||.+|+..|++|.++| |||.|.++|+.++++
T Consensus 78 li~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~ 136 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE 136 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh
Confidence 9999999999999999987 4799999999999999999999977 999999999988874
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.87 E-value=2.4e-22 Score=162.90 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029081 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA 84 (199)
Q Consensus 5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~a 84 (199)
++..+-+.|.+||.++|+++|++|..+|+++|+.++.+++++... +++..+++..|++.++.|+.++.+
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~-----------e~~~~~~~~~s~~~~~~r~~~l~~ 78 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKT-----------QAELEKQRIIANARLEVRRKRLAI 78 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999999987744 455667778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 029081 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEI 164 (199)
Q Consensus 85 r~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i 164 (199)
|+++++.+|..|.+.|..++ +..|+.+|.+||.+++..++++.++|+|+|.|.++|+.+++.+...|. + +.+
T Consensus 79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l 150 (198)
T 2dm9_A 79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI 150 (198)
T ss_dssp --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence 99999999999999999975 458999999999999999999999999999999999999999888875 2 477
Q ss_pred eeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081 165 IVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED 197 (199)
Q Consensus 165 ~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~ 197 (199)
+|+. |+ . |.||+++.++
T Consensus 151 ~i~~----~~----------~--~~GG~~i~~~ 167 (198)
T 2dm9_A 151 ELGE----TV----------D--TMGGVIVETE 167 (198)
T ss_dssp EECC----CC----------C--CSSEEEEEET
T ss_pred EECC----CC----------C--ccCceEEEeC
Confidence 7753 22 4 8899999875
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=6.9e-17 Score=121.80 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEeeccccCCCCCCCCCCCCCCCC
Q 029081 108 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSW 186 (199)
Q Consensus 108 ~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~-l~~~~~~y~~~~~~~~~~i~id~~~~L~~~~~~~~~~~~~~ 186 (199)
..|+++|++||.||++.|++|+|+|+||++|.++|+++ ++++.++|++++|.+ ++|+++. |. +
T Consensus 3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~----~~----------~- 66 (106)
T 3lg8_A 3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE----PV----------D- 66 (106)
T ss_dssp CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC----CC----------S-
T ss_pred cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC----Cc----------c-
Confidence 37999999999999999999999999999999999999 999999999999987 6777653 22 5
Q ss_pred ccccceEEecC
Q 029081 187 RCRGGFSRWED 197 (199)
Q Consensus 187 ~~~GGvvl~~~ 197 (199)
|+|||++.+.
T Consensus 67 -~~GGvil~s~ 76 (106)
T 3lg8_A 67 -IAGGCIIETA 76 (106)
T ss_dssp -SSCBCBCSSC
T ss_pred -ccccEEEEeC
Confidence 9999999873
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.04 Score=35.78 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
|..+++-|..+|+.+|+.|...|+.+.+ .|+.+...+..
T Consensus 8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae 46 (52)
T 2kk7_A 8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 7889999999999999999999999998 88877766554
No 6
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=95.12 E-value=0.89 Score=36.02 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHHH
Q 029081 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNAS 77 (199)
Q Consensus 6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~--------~S~~~n~~ 77 (199)
+..+-+.-.+-|..+|+.+|++|...|+++.+..+..+.......+...+++....+.++.+.. .+.+.+.+
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a 86 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV 86 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677899999999999999999999988888888877777777777777666664422 22333444
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHH
Q 029081 78 RIKVLQ-----AQDDLVSNMMEAASKEVL 101 (199)
Q Consensus 78 Rl~~L~-----ar~~~l~~l~~~a~~kL~ 101 (199)
|-++.+ ...++|..++.++...|.
T Consensus 87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~ 115 (187)
T 3v6i_A 87 REALEALPQKPEWPEVVRKLALEALEALP 115 (187)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHHHHcC
Confidence 433222 245778888887776653
No 7
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=91.90 E-value=0.047 Score=43.00 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029081 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (199)
Q Consensus 9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~ 88 (199)
-+.+++..|..+|+.++++|...|.++.+ .|+.+...+...++.+-..+. +.+.-..+...
T Consensus 3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a---------------~~e~~~~~~~~ 63 (198)
T 2dm9_A 3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRA---------------KTQAELEKQRI 63 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 36789999999999999999999999999 888776665554443333332 22233334444
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029081 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (199)
Q Consensus 89 l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id 167 (199)
+..+..+++..+...- ..++..++..+...|.. + +.+...+++..++.++...+ +...+.|.++
T Consensus 64 ~s~~~~~~r~~~l~~~------~ev~~~~~~~a~~~l~~--l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~ 127 (198)
T 2dm9_A 64 IANARLEVRRKRLAIQ------EEIISSVLEEVKRRLET--M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSN 127 (198)
T ss_dssp -----------------------CHHHHHHHHHHHHHHH--C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECC
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHh--c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEEC
Confidence 5555555555554432 23333344333333322 1 23334677777777776554 3322455554
No 8
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=84.94 E-value=5.8 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029081 18 RQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 18 ~~EA~eKA~EI~~kAeeE~e 37 (199)
+.+|+.++.+|...|....+
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~ 23 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRS 23 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555
No 9
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=81.92 E-value=1.4 Score=28.32 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIE 39 (199)
Q Consensus 5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiE 39 (199)
++..+-++=...|..+|+.+|++|...|+.+.+..
T Consensus 14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~ 48 (52)
T 2kk7_A 14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677899999999999999999887743
No 10
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=71.10 E-value=17 Score=23.15 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (199)
Q Consensus 11 ~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~k 57 (199)
+.--..|..+|+..+..|...+..+...+-.+|+.+....|..+..+
T Consensus 8 r~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~ 54 (61)
T 1l2p_A 8 KAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKR 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666656668888877777764443
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=66.41 E-value=13 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (199)
Q Consensus 20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~ 49 (199)
+|+.+|.+|..+|.++.+ .|+...+.
T Consensus 23 eAE~~A~~iVeeA~~ea~----~ii~eAre 48 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE----QIKAEAIE 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 677777777777777776 55554443
No 12
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=56.74 E-value=17 Score=23.05 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=38.9
Q ss_pred CceEEEeccccHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 128 PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 128 ~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
|-|.|.+...+.+--+.++..+...+.+.+|.+ .+.|.|.+ .|++ +| .+||..++
T Consensus 1 P~I~I~~~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E---~~~~---------~w-~~gG~~~~ 57 (62)
T 3m20_A 1 PVLIVYGPKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHE---PPAE---------NV-GVGGKLIA 57 (62)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEC---CCGG---------GE-EETTEETT
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEE---eCHH---------He-EECCEEhh
Confidence 345667777888888889999999999999875 35666653 3321 45 56888764
No 13
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=52.82 E-value=88 Score=25.09 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK 98 (199)
Q Consensus 19 ~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~ 98 (199)
.+.+.-..-|...|++..+ .|..+. .++|+....++..+.+-..-....+...+.-..+.-.+..+...++.
T Consensus 15 ~~i~~m~~fI~qEA~eKA~----EI~~kA----eeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~ 86 (233)
T 4efa_E 15 DELNKMQAFIRKEAEEKAK----EIQLKA----DQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRL 86 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445567777777766 776443 33333222222212111122222223334444455566667777777
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 029081 99 EVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV 166 (199)
Q Consensus 99 kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~i 166 (199)
++.. ....++..++.++...|.. -+.|.+.-..+|..+..+--...+.+.+.|.+
T Consensus 87 ~vL~------ar~e~i~~v~~~a~~~L~~-------~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~ 141 (233)
T 4efa_E 87 KVLS------AREQSLDGIFEETKEKLSG-------IANNRDEYKPILQSLIVEALLKLLEPKAIVKA 141 (233)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHH-------HHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHH-------hhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 6655 3557888888888777632 23444433444444444333344544233433
No 14
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=43.05 E-value=52 Score=22.45 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHH
Q 029081 74 LNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSLL 123 (199)
Q Consensus 74 ~n~~Rl~~L~ar~~~-l~~l~~~a~~kL~~-l~~~~~~Yk~lL~~LI~q~l~ 123 (199)
+..+=.++|++|..+ -++|+.++.+.|.. ++.++...++-+..||.....
T Consensus 12 i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl 63 (77)
T 3tdu_C 12 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYL 63 (77)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred EeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHh
Confidence 333444788887554 45677777777764 577777889999999886543
No 15
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=40.24 E-value=31 Score=22.48 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 14 VRFIRQEAEEKANEISVSAEEEFN 37 (199)
Q Consensus 14 v~fI~~EA~eKA~EI~~kAeeE~e 37 (199)
-.-|..+|++++++|...|.++..
T Consensus 28 A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 28 AVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999998875
No 16
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=37.90 E-value=88 Score=23.14 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (199)
Q Consensus 20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~ 52 (199)
+|+..|.+|...|...-. +-+.+.+....
T Consensus 17 ~AEk~A~~iV~~ARk~k~----~rLKqAK~EA~ 45 (119)
T 4efa_G 17 QAEKEAHEIVSKARKYRQ----DKLKQAKTDAA 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 588999999988887644 66666554433
No 17
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.08 E-value=62 Score=20.52 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029081 76 ASRIKVLQAQDDLVSNMMEAASKEVLNVS 104 (199)
Q Consensus 76 ~~Rl~~L~ar~~~l~~l~~~a~~kL~~l~ 104 (199)
..++.-|.+|++-|-..+..|+.+|..+.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999998874
No 18
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=35.28 E-value=60 Score=20.57 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=37.5
Q ss_pred ceEEEecc----ccHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 129 AVLLRCRK----DDHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 129 ~v~V~cr~----~D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
-|.|++.+ .+.+--+.++..+...+.+.+|.+ .+.|.|.. .|++ +| .+||..+.
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e---~~~~---------~w-~~gG~~~~ 61 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDE---VDSN---------NY-GLGGESVH 61 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE---CCTT---------TE-EETTEEHH
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEE---eCHH---------He-EECCEEHH
Confidence 35667765 688888889999999999899875 35666653 3321 45 67888654
No 19
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=34.83 E-value=1.1e+02 Score=21.24 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHHH
Q 029081 73 QLNASRIKVLQAQDDL-VSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSLL 123 (199)
Q Consensus 73 ~~n~~Rl~~L~ar~~~-l~~l~~~a~~kL~~-l~~~~~~Yk~lL~~LI~q~l~ 123 (199)
.+..+=.++|++|..+ -++|+.++.+.|.. ++.++...++-+..||....+
T Consensus 23 ~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYl 75 (88)
T 3o2p_E 23 FLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYL 75 (88)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred hhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHH
Confidence 3444445889988554 35666666667764 577777889999999886543
No 20
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=32.26 E-value=55 Score=21.59 Aligned_cols=56 Identities=5% Similarity=-0.053 Sum_probs=38.2
Q ss_pred CceEEEecc-ccHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEec
Q 029081 128 PAVLLRCRK-DDHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWE 196 (199)
Q Consensus 128 ~~v~V~cr~-~D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~ 196 (199)
|-|.|.+.+ ++.+.-+.++..+...+.+.+|.+ .+.|.|.+ .|++ +| .+||..++.
T Consensus 2 P~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E---~~~~---------~w-~~gG~~~~e 60 (76)
T 3ej9_A 2 PMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIRE---GSGI---------NF-VQHGEHLPD 60 (76)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE---ECGG---------GE-EETTEECCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEE---eCHH---------He-EECCEEccc
Confidence 345666654 788888889999999999889975 35666653 2221 34 568887654
No 21
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.43 E-value=64 Score=20.77 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=35.4
Q ss_pred eEEEec-cccHHHHHHHHHHHHHHHHHHhCCCC--CeEeeccccCCCCCCCCCCCCCCCCccccceEEec
Q 029081 130 VLLRCR-KDDHHLVESVLESAKEEYAQKLQVHP--PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWE 196 (199)
Q Consensus 130 v~V~cr-~~D~~lV~~~l~~~~~~y~~~~~~~~--~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~ 196 (199)
|.|.+. ..+.+--+.++..+...+.+.+|.+. +.|.|.+ .|++ +| .+||..+..
T Consensus 4 I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e---~~~~---------~w-~~gG~~~~e 60 (72)
T 3mb2_A 4 LRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQE---VPPT---------HW-TVGGISMAE 60 (72)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE---ECGG---------GE-EETTEETTC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEE---cCHH---------He-eECCEEHHH
Confidence 455554 46777778888999889998898762 4555543 2221 34 678887643
No 22
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=25.23 E-value=75 Score=19.88 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=35.0
Q ss_pred eEEEecc-ccHHHHHHHHHHHHHHHHHHhCCC--CCeEeeccccCCCCCCCCCCCCCCCCccccceEEe
Q 029081 130 VLLRCRK-DDHHLVESVLESAKEEYAQKLQVH--PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRW 195 (199)
Q Consensus 130 v~V~cr~-~D~~lV~~~l~~~~~~y~~~~~~~--~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~ 195 (199)
|.|.+.+ ++.+--+.++..+...+.+.+|.+ .+.|.|.+ .|++ +| .+||..+.
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e---~~~~---------~w-~~gG~~~~ 58 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEE---TPPE---------RW-FVGGRSVA 58 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE---ECGG---------GC-EETTEEHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEE---cCHH---------He-eECCEEHH
Confidence 4555554 677777888888888888888875 24566653 2221 34 67898654
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.23 E-value=1.9e+02 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=9.3
Q ss_pred HhcCCC-ceEEEeccc
Q 029081 123 LRLKEP-AVLLRCRKD 137 (199)
Q Consensus 123 ~~L~e~-~v~V~cr~~ 137 (199)
..|.++ .|.|||||-
T Consensus 55 ~elkgnIrV~vRvRP~ 70 (403)
T 4etp_A 55 QELRGNIRVYLRIRPA 70 (403)
T ss_dssp HHHHCSEEEEEEECCC
T ss_pred HHcCCCeEEEEEeCCC
Confidence 344444 677888884
No 24
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=24.35 E-value=1.1e+02 Score=18.99 Aligned_cols=26 Identities=4% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081 72 MQLNASRIKVLQAQDDLVSNMMEAAS 97 (199)
Q Consensus 72 ~~~n~~Rl~~L~ar~~~l~~l~~~a~ 97 (199)
.++.+.|.++-++++++|+-+..+..
T Consensus 15 EIL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888887766553
No 25
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=23.76 E-value=85 Score=25.38 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=32.6
Q ss_pred eEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029081 130 VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (199)
Q Consensus 130 v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id 167 (199)
+.|++.+.|...++.=++.....|++.||.+ +.+.+.
T Consensus 151 ~KV~Ld~~d~~~ve~Kletf~~VykkLTGkd-V~feFp 187 (197)
T 2xzm_3 151 YRIQLDQNDRDFLEEKLDAITHIYKTVTTRE-VTFEFK 187 (197)
T ss_dssp CCEEEESTTHHHHHHHHHHHHHHHHHHSCCB-CCEEEE
T ss_pred EEEEeCHHHhcccccchHHHHHHHHHHhCCC-EEEEEc
Confidence 4678889999999999999999999999998 677664
No 26
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=23.35 E-value=97 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=29.8
Q ss_pred cCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCC-CCCeEeec
Q 029081 125 LKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-HPPEIIVD 167 (199)
Q Consensus 125 L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~-~~~~i~id 167 (199)
++...|+|=|... --.|..++.+|...|.+..+. +..-+.|.
T Consensus 9 fg~~~vvVPC~dg-~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~ 51 (85)
T 2ns5_A 9 FGRTRVDVPCGDG-RMKVFSLIQQAVTRYRKAVAKDPNYWIQVH 51 (85)
T ss_dssp ETTEEEEEEESSS-CCCHHHHHHHHHHHHHHHTTCCTTSCEEEE
T ss_pred ECCEEEEEECCCC-cccHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 4555677888653 447789999999999999886 32345553
No 27
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=21.90 E-value=73 Score=25.68 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHH-------HHhcCCCc-eEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029081 109 SYKKLLKGLIVQS-------LLRLKEPA-VLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (199)
Q Consensus 109 ~Yk~lL~~LI~q~-------l~~L~e~~-v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id 167 (199)
-|..+|.+|+-=+ .+.+.+.. +.|+..+.|..-|+.=++.....|+..||++ +...+.
T Consensus 121 VhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkd-v~FeFp 186 (190)
T 3u5c_H 121 VHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQ-IVFEIP 186 (190)
T ss_dssp HHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCE-EEEECC
T ss_pred HHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCc-EEEEec
Confidence 4556666654311 12333333 4688899999999999999999999999997 566553
Done!