BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029082
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1
Length = 441
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 6/171 (3%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F K IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSKEE---VIKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEEAI+I SAAA++ D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SE
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASE 231
>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2
Length = 431
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
+P YRV + G S E ++KMY M L MD I Y++QRQGRISFY+T+
Sbjct: 59 LPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSF 118
Query: 72 GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
GEE ++ SAAA++ D + QYRE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+
Sbjct: 119 GEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHF 178
Query: 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSE 179
G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SE
Sbjct: 179 GTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASE 227
>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan
troglodytes GN=BCKDHA PE=2 SV=1
Length = 445
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 115/179 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASE 243
>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1
Length = 445
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 115/179 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASE 243
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo
sapiens GN=BCKDHA PE=1 SV=2
Length = 445
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 115/179 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASE 243
>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
(Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1
Length = 441
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 115/179 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 61 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQR 120
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 121 QGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 181 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASE 239
>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos
taurus GN=BCKDHA PE=2 SV=1
Length = 455
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 114/179 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 75 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 134
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ + D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 135 QGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 195 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASE 253
>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus
musculus GN=Bckdha PE=1 SV=1
Length = 442
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 114/179 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 62 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQR 121
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
+GRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F +QC+GN D
Sbjct: 122 EGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SE
Sbjct: 182 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASE 240
>sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GN=TTHA0229 PE=1 SV=1
Length = 367
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSE 179
+K+ R AV FGDG TSE
Sbjct: 160 MKLLRTGQVAVCTFGDGATSE 180
>sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=TT_C1757 PE=3 SV=1
Length = 367
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G EA +A A AI+ D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELFGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSE 179
+K+ R AV FGDG TSE
Sbjct: 160 MKLLRTGQVAVCTFGDGATSE 180
>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bkdA1 PE=3 SV=1
Length = 410
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+E+S+ RVLDDDG + ++S ++ M+ + D AQRQ ++
Sbjct: 45 AETSDLAYSLVRVLDDDGHAVGPWN-PQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKL 103
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ GEEAI A A+++ D P YR+ G+L+ R + + + Q N+AD KG
Sbjct: 104 SFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKG 163
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAV--GAAYALKMDRKDACAVTYFGDGGTSE 179
RQ+PI Y S + +F++S +ATQ AV G A A+K D + A A + GDG T+E
Sbjct: 164 RQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASA--WIGDGATAE 218
>sp|P37940|ODBA_BACSU 2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis
(strain 168) GN=bfmBAA PE=1 SV=1
Length = 330
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYRE 96
A+ MY M+ + +D + R G+I F ++ G+EA + +A A+ + D+V+P YR+
Sbjct: 16 AVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRD 75
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKG-RQMPIHYGSNKHNYFTVSSTIATQLPHAVGA 155
GV+L G + ++ F AD G RQMP H+G K+ T SS + TQ+PHAVG
Sbjct: 76 MGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGI 135
Query: 156 AYALKMDRKDACAVTYFGDGGTSE----EVSFLFLIHQLVI 192
A A +M++KD A FG+G +++ E + +H+L +
Sbjct: 136 ALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPV 176
>sp|P09060|ODBA_PSEPU 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida
GN=bkdA1 PE=1 SV=2
Length = 410
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 7/167 (4%)
Query: 16 RVLDDDGQ---PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSG 72
RVLD+ G P+ + + + + M+ + D+ AQRQ ++SFY+ + G
Sbjct: 56 RVLDEQGDAQGPWAED----IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLG 111
Query: 73 EEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
EEAI A A+ D P YR+ +L+ R S+ E Q N+ D KGRQ+PI Y
Sbjct: 112 EEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYS 171
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ +FT+S +ATQ AVG A A + A + GDG T+E
Sbjct: 172 VREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAE 218
>sp|P60090|ODPA_STAAW Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=pdhA PE=3 SV=1
Length = 370
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q A G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|Q6GAC1|ODPA_STAAS Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=pdhA PE=3 SV=1
Length = 370
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q A G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|Q820A6|ODPA_STAAN Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain N315) GN=pdhA PE=1 SV=1
Length = 370
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q A G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|P60089|ODPA_STAAM Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1
Length = 370
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q A G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|Q5HGZ1|ODPA_STAAC Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain COL) GN=pdhA PE=3 SV=1
Length = 370
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q A G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|P21873|ODPA_GEOSE Pyruvate dehydrogenase E1 component subunit alpha OS=Geobacillus
stearothermophilus GN=pdhA PE=1 SV=2
Length = 369
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
Q+P N I Q A G A LKM K A A+TY GDGGTS+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQ 179
>sp|Q8CPN3|ODPA_STAES Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1
Length = 370
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD+DG + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++++DF++P YR+ ++W G + + F + KG Q
Sbjct: 78 APTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPLTD----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q G A+ LK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQ 180
>sp|Q5HQ76|ODPA_STAEQ Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3
SV=1
Length = 370
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD+DG + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++++DF++P YR+ ++W G + + F + KG Q
Sbjct: 78 APTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPLTD----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q G A+ LK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQ 180
>sp|Q6GHZ2|ODPA_STAAR Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=pdhA PE=3 SV=1
Length = 370
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
P N + I Q G A+ALK K+A A+TY GDGG+S+
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQTAGVAFALKKRGKNAVAITYTGDGGSSQ 180
>sp|P21881|ODPA_BACSU Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
subtilis (strain 168) GN=pdhA PE=1 SV=3
Length = 371
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 14 CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE 73
+++L++ G+ +++ +++ ++ MV + +D RQGR+ FY T+G+
Sbjct: 25 TFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVFTRVLDQRSISLNRQGRLGFYAPTAGQ 84
Query: 74 EAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
EA IA+ A++ +DFV+P YR+ L+W G + Q F + +G QMP
Sbjct: 85 EASQIATHFALEKEDFVLPGYRDVPQLIWHGLPL----YQAFLFSRGHFRGNQMP----- 135
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ N + I Q G A LK K A A+TY GDGG S+
Sbjct: 136 DDVNALSPQIIIGAQYIQTAGVALGLKKRGKKAVAITYTGDGGASQ 181
>sp|O06161|BKDA_MYCTU 3-methyl-2-oxobutanoate dehydrogenase subunit alpha
OS=Mycobacterium tuberculosis GN=bkdA PE=1 SV=1
Length = 367
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 16 RVLDDDGQPFPDSSFVK-VSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
+++ DG P + + + + E +Y MV + +DT F QRQG ++ Y G+E
Sbjct: 21 QLVGPDGTPTAERRYHRDLPEETLRWLYEMMVVTRELDTEFVNLQRQGELALYTPCRGQE 80
Query: 75 AINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN 134
A + +AA ++ D++ PQYRE GV L RG G + G Q
Sbjct: 81 AAQVGAAACLRKTDWLFPQYRELGVYLVRGIPPGHVGVAWRGT---WHGGLQF------T 131
Query: 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+S I TQ HAVGAA A + +D+ V + GDG TSE
Sbjct: 132 TKCCAPMSVPIGTQTLHAVGAAMAAQRLDEDSVTVAFLGDGATSE 176
>sp|Q4MTG0|ODPA_BACCE Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
cereus GN=pdhA PE=1 SV=3
Length = 371
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%)
Query: 16 RVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEA 75
++L++ G+ +++ ++S+ ++ MV + +D RQGR+ FY T+G+EA
Sbjct: 27 QILNEKGEVVNEAAMPELSDDQLKELMRRMVYTRVLDQRSISLNRQGRLGFYAPTAGQEA 86
Query: 76 INIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK 135
+AS A++ +DF++P YR+ L+W G + Q F + G QMP +
Sbjct: 87 SQLASHFALEAEDFILPGYRDVPQLVWHGLPLY----QAFLFSRGHFMGNQMPENV---- 138
Query: 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
N I Q+ G A +K+ K + A+TY GDGG S+
Sbjct: 139 -NALAPQIIIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQ 181
>sp|P47516|ODPA_MYCGE Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=pdhA PE=3 SV=1
Length = 358
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 11/173 (6%)
Query: 9 EERIPC--YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISF 66
+ ++P Y+V D++G+ + + +++ Y M + MD QR G++
Sbjct: 6 KNKVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRAGKMLN 65
Query: 67 YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQ 126
+ GEEA+ + + +D+V P +R ++L+RG ++ GN+ KG Q
Sbjct: 66 FAPNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNE----KGSQ 121
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Y + ++ TI Q HA G Y L ++ AVT GDGGT+E
Sbjct: 122 IDAKYKT-----LPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAE 169
>sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PDA1 PE=1 SV=2
Length = 420
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAI 84
PD S+ + S+ ++MY DMV ++ M+ + +I F + G+EAI + AI
Sbjct: 70 PDLSY-ETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFCHLSVGQEAIAVGIENAI 128
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA--DYGKGRQM----PIHYGSNKHNY 138
D ++ YR G RG S++ + G +A YGKG M P YG N
Sbjct: 129 TKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYAPGFYGGN---- 184
Query: 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSF 183
+ Q+P G A+A + +DAC+ T +GDG +++ F
Sbjct: 185 ----GIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVF 225
>sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2
Length = 389
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 7/158 (4%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V+ S + + M ++ M D+++ +G Y G+EA+ I
Sbjct: 47 PPSRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAIGME 103
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ + L RG S+ E ++ G +A KG+ +H+ + +++
Sbjct: 104 AAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGG 163
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Q+P G A+A K ++++A +GDG ++
Sbjct: 164 HGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQ 201
>sp|P75390|ODPA_MYCPN Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=pdhA PE=3 SV=1
Length = 358
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 9 EERIPC--YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISF 66
+ ++P Y+V D++G+ + + +S + M + MD QR G++
Sbjct: 6 KNKVPTTLYQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRAGKMLN 65
Query: 67 YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQ 126
+ GEEA+ + + +D+ P +R ++L+RG ++ GN+ G +
Sbjct: 66 FAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLLLYWNGNE----NGSK 121
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Y + ++ TI Q HA G Y L + AVT GDGGT+E
Sbjct: 122 IEAKYKT-----LPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAE 169
>sp|P35485|ODPA_ACHLA Pyruvate dehydrogenase E1 component subunit alpha (Fragment)
OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1
Length = 345
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 19 DDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINI 78
D +G+ + K+ + +KMY V + D + QRQGR+ Y G+EA I
Sbjct: 1 DQNGKVVNEKMEPKLPKETLLKMYKTAVLGRNADIKALQYQRQGRMLTYAPNMGQEAAQI 60
Query: 79 ASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY 138
AAA++ D+ P YRE LL+RG ++ +GN+ K + I
Sbjct: 61 GMAAAMEPQDWNSPMYRELNTLLYRGDKLENVFLYWYGNERGSIKPEGVKI--------- 111
Query: 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 178
+ I +Q A G A A K+ + + GDGGT+
Sbjct: 112 LPTNIIIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTA 151
>sp|Q10489|ODPA_SCHPO Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pda1 PE=1 SV=1
Length = 409
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 2 RFISESSEERIPCYRVLDDDGQPFP----DSSF-----------VKVSEGVAIKMYNDMV 46
R ++++ R V ++ +PFP DS F ++V++G + +Y MV
Sbjct: 27 RVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMV 86
Query: 47 TLQTMDTIFYEAQRQGRISFYLTTS-GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGF 105
T++ ++ + +I + S G+EA+ AI DD ++ YR G RG
Sbjct: 87 TIRRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGL 146
Query: 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165
S++ + G + KG+ +H + N++ + + Q+P G +A K K
Sbjct: 147 SIRSIIGELMGRQCGASKGKGGSMHIFAK--NFYGGNGIVGAQIPLGAGIGFAQKYLEKP 204
Query: 166 ACAVTYFGDGGTSEEVSF 183
+GDG +++ +F
Sbjct: 205 TTTFALYGDGASNQGQAF 222
>sp|O13366|ODPA_KLULA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PDA1 PE=3
SV=2
Length = 412
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 1 MRFISESSEERIPCYRVLDDD--GQPFPDSSF-----------VKVSEGVAIKMYNDMVT 47
+R +S+ ++E P DDD P++SF + ++ ++MY DM+
Sbjct: 27 VRALSQVADETKPG----DDDLVQIDLPETSFEGYLLDVPELSYQTTKSNLLQMYKDMII 82
Query: 48 LQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFS 106
++ M+ + +I F ++ G+EAI + AI D V+ YR G RG +
Sbjct: 83 VRRMEMACDALYKAKKIRGFCHSSVGQEAIAVGIENAITKRDTVITSYRCHGFTYMRGAA 142
Query: 107 MQEFANQCFGNKA--DYGKGRQM----PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160
+Q + G + +GKG M P YG N + Q+P G A+A +
Sbjct: 143 VQAVLAELMGRRTGVSFGKGGSMHLYAPGFYGGN--------GIVGAQVPLGAGLAFAHQ 194
Query: 161 MDRKDACAVTYFGDGGTSE 179
+DAC+ +GDG +++
Sbjct: 195 YKHEDACSFALYGDGASNQ 213
>sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Solanum tuberosum PE=1 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 7/158 (4%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V+ S + + DM ++ M D+++ +G Y G+EA+ +
Sbjct: 49 PPSRSVETSPKELMTFFKDMTEMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 105
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ + L RG ++ E + G + +G+ +H+ + ++
Sbjct: 106 AAITKKDCIITAYRDHCIFLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGG 165
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Q+P +G A+A K ++D +GDG ++
Sbjct: 166 HGIVGAQVPLGIGLAFAQKYKKEDYVTFAMYGDGAANQ 203
>sp|P52900|ODPA_SMIMA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
(Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1
Length = 363
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAI 84
P ++ + EG +K Y M T++ M+ + +Q I F G+EA + A I
Sbjct: 24 PTTAVLTREEG--LKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAGI 81
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSST 144
D V+ YR G RG ++E + G + KG+ +H + N++ +
Sbjct: 82 NPTDHVITAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGI 139
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Q+P VG A A K + KD +T +GDG ++
Sbjct: 140 VGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQ 174
>sp|A7MB35|ODPA_BOVIN Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1
Length = 390
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSE 179
A K + KD +T +GDG ++
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQ 201
>sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, testis-specific
form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1
Length = 388
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 14 CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSG 72
C L ++G P ++ + +EG +K Y M+T++ M+ + +Q I F G
Sbjct: 39 CDLYLLEEGPPV--TTVLTRAEG--LKYYRMMLTVRRMELKADQLYKQKFIRGFCHLCDG 94
Query: 73 EEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
+EA + A I D V+ YR GV RG S++ + G + KG+ +H
Sbjct: 95 QEACCVGLEAGINPSDHVITSYRAHGVCYTRGLSVRSILAELTGRRGGCAKGKGGSMHMY 154
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ N++ + + Q P G A A K D +T +GDG ++
Sbjct: 155 TK--NFYGGNGIVGAQGPLGAGIALACKYKGNDEICLTLYGDGAANQ 199
>sp|P26267|ODPA_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type I,
mitochondrial OS=Ascaris suum PE=1 SV=1
Length = 396
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDT----IFYEAQRQGRISFYLTTSGEEAINIASA 81
PD + V V++ A+ Y M+T++ M++ ++ E + +G Y SG+EA + +
Sbjct: 46 PDIN-VHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLY---SGQEACAVGTK 101
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQ----EFANQCFGNKADYGKGRQMPIHYGSNKHN 137
AA+ D V YR G G S+ E + GN YGKG M + YG N
Sbjct: 102 AAMDAGDAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNV--YGKGGSMHM-YG---EN 155
Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
++ + + Q P G A+A+K ++ +T FGDG T++
Sbjct: 156 FYGGNGIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQ 197
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2
SV=1
Length = 397
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDT----IFYEAQRQGRISFYL 68
PC D+G P++S V ++ A+K Y DM ++ M++ ++ E + +G Y
Sbjct: 34 PCKLHKLDNG---PNTS-VTLNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLY- 88
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD--YGKGRQ 126
SG+EA + AA+ D V+ YR G G ++ E + G A +GKG
Sbjct: 89 --SGQEACAVGMKAAMTEGDAVITAYRCHGWTWLLGATVTEVLAELTGRVAGNVHGKGGS 146
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
M ++ N++ + + Q P G A A+K + VT +GDG ++
Sbjct: 147 MHMY----TKNFYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQ 195
>sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2
SV=1
Length = 390
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V + + + DM ++ M D+++ +G Y G+EA+ +
Sbjct: 48 PPSRDVTTTPAELLTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 104
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ L RG + + G +A +G+ +H+ N++
Sbjct: 105 AAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGG 164
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Q+P G A+A K +++ +GDG ++
Sbjct: 165 HGIVGAQVPLGCGLAFAQKYRKEETATFALYGDGAANQ 202
>sp|P26268|ODPT_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type II,
mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1
Length = 391
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDT----IFYEAQRQGRISFYLTTSGEEAINIASA 81
PD + + V++ A++ Y M T++ M+T ++ E + +G Y SG+EA +
Sbjct: 41 PDVN-MHVTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHLY---SGQEACAVGMK 96
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQ----EFANQCFGNKADYGKGRQMPIHYGSNKHN 137
AA++ D + YR G G + E + GN YGKG M + YG N
Sbjct: 97 AAMEPGDAAITAYRCHGWTYLSGSPVAKVLCELTGRITGNV--YGKGGSMHM-YG---EN 150
Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
++ + + Q P G A+A+K ++ +T FGDG T++
Sbjct: 151 FYGGNGIVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQ 192
>sp|O66112|ODPA_ZYMMO Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=pdhA PE=3 SV=1
Length = 354
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 72 GEEAINIASAAAIK-NDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G+EA+ + AA++ D V+ YRE G +L G + + G + G+ +H
Sbjct: 74 GQEAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMH 133
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
S +H +F + + Q+P G A+A K C+ YFGDG ++
Sbjct: 134 MFSTEHKFFGGNGIVGAQVPLGAGLAFAHKYRNDGGCSAAYFGDGSANQ 182
>sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2
Length = 393
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 28 SSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASAAA 83
S V+ S + + DM ++ M D+++ +G Y G+EA+ + AA
Sbjct: 53 SRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLY---DGQEALAVGMEAA 109
Query: 84 IKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSS 143
I D ++ YR+ + RG + + ++ G K G+ +H+ +++
Sbjct: 110 ITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHG 169
Query: 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
+ Q+P G A+A K ++ +A +GDG ++
Sbjct: 170 IVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQ 205
>sp|P35486|ODPA_MOUSE Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1
Length = 390
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG ++ + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSE 179
A K + KD +T +GDG ++
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQ 201
>sp|P26284|ODPA_RAT Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2
Length = 390
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG +++ + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFNRGHAVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSE 179
A K + KD +T +GDG ++
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQ 201
>sp|P51267|ODPA_PORPU Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra
purpurea GN=pdhA PE=3 SV=1
Length = 344
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 24 PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAA 82
P + + + +++ + +Y DM+ + + + + +G++ F +G+EA++
Sbjct: 10 PLTNCNQINLTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIK 69
Query: 83 AIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVS 142
+ + D+V YR+ L +G Q + FG + +GR +H S HN+
Sbjct: 70 LLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGF 129
Query: 143 STIATQLPHAVGAAY-------ALKMDRKDACAVTYFGDGGTS 178
+ IA +P A GAA+ LK + +FGDG T+
Sbjct: 130 AFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTN 172
>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1
Length = 428
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+++Y DM+ ++ + + + +G++ F +G+EA++ + D VV YR+
Sbjct: 84 GLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRD 143
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
L +G S + ++ FG +G+ +H S +HN + I +P A GAA
Sbjct: 144 HVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAA 203
Query: 157 YALKMDRK------DACAVTYFGDG 175
++ K R+ D V +FGDG
Sbjct: 204 FSSKYRREVLKQDCDDVTVAFFGDG 228
>sp|Q1XDM0|ODPA_PORYE Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra
yezoensis GN=pdhA PE=3 SV=1
Length = 346
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 8/160 (5%)
Query: 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK 85
+S+ + +++ + +Y DM+ + + + + +G++ F +G+EA++ +
Sbjct: 15 NSTGLNLNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLN 74
Query: 86 NDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTI 145
D+V YR+ L +G + + FG + KGR +H S HN+ + I
Sbjct: 75 PTDYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGFAFI 134
Query: 146 ATQLPHAVGAAY-------ALKMDRKDACAVTYFGDGGTS 178
A +P A GAA+ LK +FGDG T+
Sbjct: 135 AEGIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTN 174
>sp|Q7XTJ3|ODPA3_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os04g0119400 PE=2
SV=2
Length = 425
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 33 VSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVV 91
V+ A+++Y DMV + + + + +G++ F +G+EA++ + D VV
Sbjct: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132
Query: 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 151
YR+ L +G + + FG +G+ +H S HN + I +P
Sbjct: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
Query: 152 AVGAAYA-------LKMDRKDACAVT--YFGDG 175
A GAA+A LK D VT +FGDG
Sbjct: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDG 225
>sp|O31404|ACOA_BACSU Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
OS=Bacillus subtilis (strain 168) GN=acoA PE=2 SV=2
Length = 333
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Query: 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDF 89
+ ++E A+ MY M+ ++ + +E QG + F +GEEA+ + A + + D
Sbjct: 9 LSLTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLHDGDS 68
Query: 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149
+ +R G + +G + + FG KG+ +H + +
Sbjct: 69 ITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCKGKGGSMHIADLDKGMLGANGIVGGGF 128
Query: 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSE 179
A G+A K + +V +FGDG ++
Sbjct: 129 TLACGSALTAKYKQTKNVSVCFFGDGANNQ 158
>sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1
Length = 377
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Query: 39 IKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREP 97
I + +M + ++T+ ++ I F +G+EA+ +AI DD ++ YR+
Sbjct: 53 ISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAGLESAITKDDHIITAYRDH 112
Query: 98 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAY 157
+L RG + +E + + KG+ +H + N++ + + Q P G A+
Sbjct: 113 TYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTK--NFYGGNGIVGAQCPLGAGIAF 170
Query: 158 ALKMDRKDACAVTYFGDGGTSE 179
A K ++ + +GDG ++
Sbjct: 171 AQKYNKTGNVCLAMYGDGAANQ 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,569,051
Number of Sequences: 539616
Number of extensions: 2764923
Number of successful extensions: 5774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5666
Number of HSP's gapped (non-prelim): 73
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)