Query 029082
Match_columns 199
No_of_seqs 120 out of 1290
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 6.8E-58 1.5E-62 407.3 17.5 182 13-194 2-192 (358)
2 PLN02269 Pyruvate dehydrogenas 100.0 4.7E-51 1E-55 366.2 18.0 165 31-195 25-194 (362)
3 KOG1182 Branched chain alpha-k 100.0 1.2E-51 2.7E-56 358.4 13.1 189 1-189 51-240 (432)
4 CHL00149 odpA pyruvate dehydro 100.0 4.3E-48 9.2E-53 344.8 17.8 167 29-195 13-191 (341)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 1.4E-47 3.1E-52 338.1 16.0 161 35-195 1-166 (315)
6 PLN02374 pyruvate dehydrogenas 100.0 2.8E-46 6E-51 341.8 18.0 166 30-195 80-257 (433)
7 TIGR03181 PDH_E1_alph_x pyruva 100.0 8.6E-45 1.9E-49 323.5 17.8 174 13-195 1-178 (341)
8 KOG0225 Pyruvate dehydrogenase 100.0 6.6E-45 1.4E-49 318.0 13.1 163 30-194 53-220 (394)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 2.2E-44 4.7E-49 314.5 15.3 155 41-195 1-160 (293)
10 PF00676 E1_dh: Dehydrogenase 100.0 3.2E-41 7E-46 295.9 14.0 152 42-194 1-156 (300)
11 PRK09404 sucA 2-oxoglutarate d 99.9 2.7E-27 5.9E-32 232.1 15.5 152 32-191 185-373 (924)
12 cd02016 TPP_E1_OGDC_like Thiam 99.9 2.9E-25 6.3E-30 191.9 9.9 125 67-191 14-171 (265)
13 PRK12315 1-deoxy-D-xylulose-5- 99.9 2.9E-22 6.4E-27 189.7 11.7 148 30-195 12-169 (581)
14 TIGR00239 2oxo_dh_E1 2-oxoglut 99.8 1.6E-17 3.5E-22 163.3 15.3 159 30-192 183-375 (929)
15 COG3959 Transketolase, N-termi 99.6 1.9E-14 4.1E-19 121.2 12.0 141 37-186 6-162 (243)
16 cd02011 TPP_PK Thiamine pyroph 99.5 4.3E-14 9.3E-19 120.0 7.1 108 70-194 1-120 (227)
17 TIGR00232 tktlase_bact transke 99.4 2.5E-12 5.5E-17 123.7 11.5 139 45-193 4-174 (653)
18 PRK12754 transketolase; Review 99.4 4.3E-12 9.4E-17 122.2 12.4 139 45-193 8-178 (663)
19 cd02007 TPP_DXS Thiamine pyrop 99.4 3.1E-12 6.8E-17 106.1 8.9 99 86-194 24-130 (195)
20 PLN02582 1-deoxy-D-xylulose-5- 99.3 4.4E-12 9.5E-17 122.3 10.8 148 30-194 43-199 (677)
21 PRK12753 transketolase; Review 99.3 5.8E-12 1.3E-16 121.4 11.6 138 45-192 8-177 (663)
22 TIGR00204 dxs 1-deoxy-D-xylulo 99.3 4.3E-12 9.3E-17 121.4 10.1 148 30-194 10-166 (617)
23 PTZ00089 transketolase; Provis 99.3 1.3E-11 2.9E-16 118.9 11.7 138 45-192 10-179 (661)
24 PRK11864 2-ketoisovalerate fer 99.3 2.3E-12 4.9E-17 113.6 5.7 100 93-195 14-125 (300)
25 PLN02790 transketolase 99.3 1.5E-11 3.3E-16 118.3 11.3 133 49-191 2-167 (654)
26 PRK05444 1-deoxy-D-xylulose-5- 99.2 3.5E-11 7.6E-16 114.3 10.3 148 29-193 15-172 (580)
27 cd02012 TPP_TK Thiamine pyroph 99.2 7.8E-11 1.7E-15 101.0 11.1 138 48-194 3-160 (255)
28 PLN02234 1-deoxy-D-xylulose-5- 99.2 1.4E-10 3.1E-15 111.3 11.8 133 42-188 85-222 (641)
29 PRK05899 transketolase; Review 99.2 2.6E-10 5.5E-15 109.2 12.2 143 41-193 8-182 (624)
30 cd02017 TPP_E1_EcPDC_like Thia 99.2 3.9E-10 8.4E-15 102.3 12.5 137 43-187 6-169 (386)
31 PF00456 Transketolase_N: Tran 99.1 8.4E-11 1.8E-15 105.0 6.1 133 44-186 4-164 (332)
32 TIGR00759 aceE pyruvate dehydr 98.9 1.3E-08 2.9E-13 99.9 13.1 133 46-186 80-239 (885)
33 KOG0523 Transketolase [Carbohy 98.9 1.4E-08 2.9E-13 95.8 12.1 136 43-187 12-163 (632)
34 PRK12571 1-deoxy-D-xylulose-5- 98.9 1.3E-08 2.8E-13 98.1 11.2 160 15-194 6-174 (641)
35 TIGR03186 AKGDH_not_PDH alpha- 98.9 2.4E-08 5.1E-13 98.7 13.1 136 45-186 79-239 (889)
36 PRK13012 2-oxoacid dehydrogena 98.7 9.7E-08 2.1E-12 94.7 12.3 136 44-187 92-254 (896)
37 PRK09405 aceE pyruvate dehydro 98.6 6.3E-07 1.4E-11 88.8 12.6 143 35-187 77-246 (891)
38 PRK05261 putative phosphoketol 98.1 8.6E-06 1.9E-10 80.0 8.8 119 65-194 50-200 (785)
39 COG0021 TktA Transketolase [Ca 98.0 6.5E-05 1.4E-09 72.0 10.6 133 44-186 9-169 (663)
40 PF13292 DXP_synthase_N: 1-deo 97.9 7.9E-06 1.7E-10 71.0 3.3 140 30-188 10-156 (270)
41 PLN02225 1-deoxy-D-xylulose-5- 97.8 0.00014 3.1E-09 70.9 11.0 110 68-188 120-234 (701)
42 COG1154 Dxs Deoxyxylulose-5-ph 97.8 0.0003 6.5E-09 67.2 11.6 142 29-189 13-161 (627)
43 cd03372 TPP_ComE Thiamine pyro 97.7 2.5E-05 5.4E-10 63.8 2.8 48 142-194 41-91 (179)
44 cd00568 TPP_enzymes Thiamine p 97.5 6.3E-05 1.4E-09 59.3 3.1 55 137-195 40-96 (168)
45 cd02002 TPP_BFDC Thiamine pyro 97.5 0.00012 2.5E-09 59.0 3.8 49 143-195 49-99 (178)
46 cd02004 TPP_BZL_OCoD_HPCL Thia 97.2 0.00047 1E-08 55.3 4.9 51 141-195 46-98 (172)
47 cd02014 TPP_POX Thiamine pyrop 97.2 0.00027 6E-09 57.2 2.9 51 141-195 49-101 (178)
48 cd02001 TPP_ComE_PpyrDC Thiami 96.9 0.00048 1E-08 55.1 2.2 49 142-195 41-92 (157)
49 cd02015 TPP_AHAS Thiamine pyro 96.9 0.00091 2E-08 54.5 3.7 51 141-195 48-100 (186)
50 cd02008 TPP_IOR_alpha Thiamine 96.7 0.0019 4.2E-08 52.3 4.2 52 140-195 48-102 (178)
51 PRK07092 benzoylformate decarb 96.6 0.0025 5.5E-08 59.9 4.3 52 140-195 404-457 (530)
52 cd02005 TPP_PDC_IPDC Thiamine 96.5 0.0018 4E-08 52.8 2.8 51 140-195 47-100 (183)
53 PRK06725 acetolactate synthase 96.5 0.0028 6.1E-08 60.3 4.5 51 141-195 420-472 (570)
54 cd02013 TPP_Xsc_like Thiamine 96.5 0.0022 4.7E-08 52.9 3.2 51 141-195 51-103 (196)
55 cd03375 TPP_OGFOR Thiamine pyr 96.5 0.003 6.5E-08 52.1 3.8 49 143-195 51-102 (193)
56 cd02010 TPP_ALS Thiamine pyrop 96.5 0.0024 5.2E-08 51.9 3.1 51 141-195 46-98 (177)
57 cd02006 TPP_Gcl Thiamine pyrop 96.4 0.003 6.5E-08 52.2 3.3 51 141-195 55-107 (202)
58 PRK06163 hypothetical protein; 96.2 0.0039 8.5E-08 52.1 3.0 50 142-195 56-108 (202)
59 cd03371 TPP_PpyrDC Thiamine py 96.2 0.0042 9.2E-08 51.1 3.1 49 142-194 47-98 (188)
60 TIGR03846 sulfopy_beta sulfopy 96.1 0.0043 9.4E-08 50.8 2.7 49 142-195 41-92 (181)
61 PF02775 TPP_enzyme_C: Thiamin 96.0 0.004 8.7E-08 48.9 2.0 52 140-195 25-78 (153)
62 PRK07524 hypothetical protein; 95.9 0.0062 1.3E-07 57.3 3.4 50 142-195 406-457 (535)
63 PRK07064 hypothetical protein; 95.8 0.0093 2E-07 56.1 4.1 54 138-195 400-455 (544)
64 cd02018 TPP_PFOR Thiamine pyro 95.8 0.0047 1E-07 52.7 1.8 55 141-195 62-120 (237)
65 cd02003 TPP_IolD Thiamine pyro 95.8 0.012 2.6E-07 48.9 4.1 51 141-195 46-98 (205)
66 PRK07586 hypothetical protein; 95.8 0.0095 2.1E-07 55.7 3.9 50 142-195 384-435 (514)
67 PRK11867 2-oxoglutarate ferred 95.6 0.014 3E-07 51.4 4.2 50 142-195 68-120 (286)
68 PRK12474 hypothetical protein; 95.5 0.017 3.7E-07 54.2 4.6 51 141-195 387-439 (518)
69 PRK08155 acetolactate synthase 95.5 0.011 2.4E-07 56.0 3.4 51 141-195 417-469 (564)
70 PRK08199 thiamine pyrophosphat 95.5 0.015 3.3E-07 55.0 4.3 51 141-195 413-465 (557)
71 PRK06546 pyruvate dehydrogenas 95.5 0.012 2.7E-07 56.1 3.7 51 141-195 406-458 (578)
72 cd03376 TPP_PFOR_porB_like Thi 95.5 0.0098 2.1E-07 50.7 2.5 53 139-195 58-113 (235)
73 PRK09124 pyruvate dehydrogenas 95.5 0.016 3.4E-07 55.1 4.1 51 141-195 406-458 (574)
74 TIGR00118 acolac_lg acetolacta 95.4 0.012 2.7E-07 55.6 3.2 51 141-195 410-462 (558)
75 cd02009 TPP_SHCHC_synthase Thi 95.4 0.0066 1.4E-07 49.1 1.2 48 143-195 51-100 (175)
76 PRK05778 2-oxoglutarate ferred 95.4 0.021 4.5E-07 50.7 4.3 103 58-195 10-121 (301)
77 PRK06154 hypothetical protein; 95.3 0.013 2.8E-07 55.8 3.1 51 141-195 429-481 (565)
78 PRK08527 acetolactate synthase 95.3 0.018 3.9E-07 54.6 3.9 50 142-195 413-464 (563)
79 PRK06112 acetolactate synthase 95.2 0.017 3.7E-07 54.9 3.4 50 142-195 436-487 (578)
80 PRK08266 hypothetical protein; 95.1 0.017 3.6E-07 54.4 3.2 51 141-195 400-452 (542)
81 PRK06882 acetolactate synthase 95.1 0.017 3.6E-07 54.9 3.2 51 141-195 419-471 (574)
82 PRK05858 hypothetical protein; 95.1 0.021 4.6E-07 53.9 3.8 51 141-195 405-457 (542)
83 TIGR01504 glyox_carbo_lig glyo 95.0 0.019 4.2E-07 54.9 3.3 50 142-195 417-468 (588)
84 PRK11269 glyoxylate carboligas 95.0 0.022 4.7E-07 54.5 3.5 51 141-195 417-469 (591)
85 TIGR02177 PorB_KorB 2-oxoacid: 94.9 0.033 7.1E-07 49.2 4.3 49 143-195 53-104 (287)
86 TIGR03457 sulphoacet_xsc sulfo 94.9 0.022 4.7E-07 54.2 3.3 50 142-195 429-480 (579)
87 PRK09259 putative oxalyl-CoA d 94.9 0.026 5.7E-07 53.6 3.8 50 141-195 422-473 (569)
88 PLN02573 pyruvate decarboxylas 94.8 0.019 4.1E-07 54.9 2.7 51 141-195 426-478 (578)
89 PRK06466 acetolactate synthase 94.8 0.023 5E-07 54.0 3.2 51 141-195 421-473 (574)
90 PRK11869 2-oxoacid ferredoxin 94.8 0.031 6.7E-07 49.2 3.7 100 61-195 3-111 (280)
91 TIGR03254 oxalate_oxc oxalyl-C 94.8 0.03 6.4E-07 53.0 3.8 50 141-195 415-466 (554)
92 TIGR03297 Ppyr-DeCO2ase phosph 94.7 0.016 3.5E-07 52.6 1.9 48 142-193 220-270 (361)
93 PRK08979 acetolactate synthase 94.7 0.024 5.2E-07 53.9 3.1 50 142-195 420-471 (572)
94 CHL00099 ilvB acetohydroxyacid 94.7 0.023 5.1E-07 54.2 2.9 51 141-195 428-480 (585)
95 PRK09107 acetolactate synthase 94.7 0.036 7.9E-07 53.1 4.2 50 142-195 429-480 (595)
96 PRK08327 acetolactate synthase 94.5 0.038 8.3E-07 52.6 3.8 50 142-195 429-482 (569)
97 PRK06965 acetolactate synthase 94.5 0.037 7.9E-07 52.9 3.7 51 141-195 435-487 (587)
98 PRK07525 sulfoacetaldehyde ace 94.5 0.032 7E-07 53.2 3.3 51 141-195 433-485 (588)
99 PRK11865 pyruvate ferredoxin o 94.4 0.049 1.1E-06 48.3 4.2 48 135-182 61-108 (299)
100 PRK07789 acetolactate synthase 94.4 0.028 6.1E-07 54.0 2.8 50 142-195 446-497 (612)
101 TIGR02418 acolac_catab acetola 94.4 0.034 7.5E-07 52.3 3.3 51 141-195 406-458 (539)
102 TIGR03393 indolpyr_decarb indo 94.4 0.022 4.7E-07 53.8 1.9 51 141-195 402-454 (539)
103 PRK08273 thiamine pyrophosphat 94.4 0.036 7.8E-07 53.1 3.4 51 141-195 413-471 (597)
104 TIGR03336 IOR_alpha indolepyru 94.3 0.053 1.1E-06 52.1 4.4 55 137-195 397-454 (595)
105 PRK07710 acetolactate synthase 94.3 0.036 7.9E-07 52.6 3.2 51 141-195 422-474 (571)
106 PRK11866 2-oxoacid ferredoxin 94.2 0.063 1.4E-06 47.2 4.2 50 142-195 58-110 (279)
107 PRK06276 acetolactate synthase 94.1 0.045 9.7E-07 52.2 3.4 50 142-195 418-469 (586)
108 PLN02470 acetolactate synthase 94.1 0.042 9.1E-07 52.4 3.2 50 142-195 425-476 (585)
109 PRK07979 acetolactate synthase 94.0 0.059 1.3E-06 51.2 4.1 51 141-195 419-471 (574)
110 PRK06048 acetolactate synthase 94.0 0.052 1.1E-06 51.5 3.7 49 143-195 414-464 (561)
111 PRK07282 acetolactate synthase 94.0 0.036 7.8E-07 52.7 2.5 51 141-195 416-468 (566)
112 PRK08978 acetolactate synthase 93.9 0.061 1.3E-06 50.8 3.8 50 142-195 400-451 (548)
113 PRK07418 acetolactate synthase 93.6 0.058 1.2E-06 51.9 3.3 51 141-195 432-484 (616)
114 PRK08617 acetolactate synthase 93.3 0.072 1.6E-06 50.3 3.2 50 142-195 413-464 (552)
115 PRK08611 pyruvate oxidase; Pro 93.2 0.072 1.6E-06 50.8 3.1 50 142-195 407-458 (576)
116 PRK08322 acetolactate synthase 92.9 0.096 2.1E-06 49.4 3.4 51 141-195 404-456 (547)
117 COG0028 IlvB Thiamine pyrophos 92.7 0.18 3.8E-06 48.3 5.0 52 140-195 405-458 (550)
118 PRK09628 oorB 2-oxoglutarate-a 92.6 0.15 3.2E-06 44.8 4.0 48 144-195 69-119 (277)
119 PRK07449 2-succinyl-5-enolpyru 92.4 0.058 1.3E-06 51.1 1.3 48 143-195 425-474 (568)
120 TIGR03394 indol_phenyl_DC indo 92.3 0.085 1.8E-06 49.9 2.2 50 141-195 401-452 (535)
121 PRK06456 acetolactate synthase 92.2 0.12 2.7E-06 49.0 3.3 51 141-195 419-471 (572)
122 PRK06457 pyruvate dehydrogenas 92.1 0.12 2.5E-06 49.0 2.9 52 141-195 394-447 (549)
123 TIGR02720 pyruv_oxi_spxB pyruv 92.0 0.18 3.9E-06 48.1 4.1 50 142-195 407-458 (575)
124 COG2609 AceE Pyruvate dehydrog 90.7 8.8 0.00019 38.2 13.9 103 76-186 117-242 (887)
125 PRK12270 kgd alpha-ketoglutara 89.8 6.1 0.00013 40.8 12.4 158 30-191 487-678 (1228)
126 PF09364 XFP_N: XFP N-terminal 89.7 0.45 9.7E-06 43.5 4.2 103 66-185 75-178 (379)
127 COG0567 SucA 2-oxoglutarate de 86.5 12 0.00025 38.2 11.9 154 30-187 169-348 (906)
128 KOG0451 Predicted 2-oxoglutara 83.9 8.4 0.00018 37.5 9.3 155 32-195 153-351 (913)
129 COG3961 Pyruvate decarboxylase 79.6 0.96 2.1E-05 43.1 1.4 50 139-193 407-459 (557)
130 COG3957 Phosphoketolase [Carbo 79.1 2.1 4.5E-05 42.3 3.6 55 127-185 137-191 (793)
131 KOG1185 Thiamine pyrophosphate 76.3 3.2 7E-05 39.5 3.8 45 152-196 435-481 (571)
132 KOG1184 Thiamine pyrophosphate 70.9 3.3 7.2E-05 39.5 2.6 48 142-193 414-463 (561)
133 KOG0450 2-oxoglutarate dehydro 65.6 36 0.00078 34.2 8.4 160 29-193 242-431 (1017)
134 TIGR01658 EYA-cons_domain eyes 62.4 6 0.00013 34.6 2.3 32 163-197 227-258 (274)
135 PLN02980 2-oxoglutarate decarb 60.2 6.5 0.00014 42.5 2.6 50 141-195 757-812 (1655)
136 COG1013 PorB Pyruvate:ferredox 58.5 12 0.00026 33.2 3.6 40 138-181 65-105 (294)
137 KOG3170 Conserved phosducin-li 50.0 79 0.0017 27.0 6.9 70 34-117 65-135 (240)
138 cd06586 TPP_enzyme_PYR Pyrimid 34.8 39 0.00086 25.5 2.8 45 152-196 47-92 (154)
139 COG2873 MET17 O-acetylhomoseri 34.0 62 0.0013 30.1 4.2 58 34-93 39-107 (426)
140 KOG1615 Phosphoserine phosphat 31.9 44 0.00096 28.4 2.7 26 154-179 161-186 (227)
141 PF07356 DUF1481: Protein of u 27.9 84 0.0018 26.3 3.7 60 18-77 72-141 (195)
142 PHA00515 hypothetical protein 27.6 50 0.0011 21.2 1.8 23 39-61 10-32 (53)
143 KOG4100 Uncharacterized conser 26.4 32 0.0007 26.6 0.9 21 30-50 90-110 (125)
144 PF08806 Sep15_SelM: Sep15/Sel 24.1 43 0.00093 23.8 1.1 33 11-43 41-73 (78)
145 TIGR00589 ogt O-6-methylguanin 23.3 82 0.0018 22.3 2.5 21 75-95 35-55 (80)
146 PF01035 DNA_binding_1: 6-O-me 23.3 46 0.001 23.7 1.2 23 73-95 33-55 (85)
147 COG5123 TOA2 Transcription ini 22.9 1.4E+02 0.003 22.6 3.7 28 38-65 4-31 (113)
148 PRK06702 O-acetylhomoserine am 22.8 1.5E+02 0.0032 27.6 4.8 45 47-93 62-106 (432)
149 cd06445 ATase The DNA repair p 21.9 59 0.0013 22.7 1.5 22 74-95 32-53 (79)
150 PRK08452 flagellar protein Fla 21.9 93 0.002 24.2 2.7 33 10-47 81-114 (124)
151 PF12637 TSCPD: TSCPD domain; 21.8 2.4E+02 0.0051 20.5 4.8 20 99-118 49-68 (95)
152 COG2008 GLY1 Threonine aldolas 21.6 1.6E+02 0.0034 26.9 4.5 51 46-98 35-85 (342)
153 cd04469 S1_Hex1 S1_Hex1: Hex1, 21.5 1.3E+02 0.0029 21.3 3.2 48 13-76 13-64 (75)
154 cd00617 Tnase_like Tryptophana 21.0 1.5E+02 0.0032 27.6 4.3 45 45-91 52-96 (431)
155 PRK08114 cystathionine beta-ly 20.9 2E+02 0.0042 26.5 5.1 45 47-93 63-107 (395)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-58 Score=407.29 Aligned_cols=182 Identities=32% Similarity=0.533 Sum_probs=174.0
Q ss_pred CceeeeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-cccCCCchhHHHHHHHhhccCC-C
Q 029082 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (199)
Q Consensus 13 ~~~~~l~~~G~~~~~~~~~--~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig-~~~~~~GqEa~~vg~~~al~~~-D 88 (199)
+.+|+++++|+++.+.... .+++++++++||+|+++|.||+++.+++|||+++ |+|++.||||++||++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5789999999999885433 7899999999999999999999999999999996 9999999999999999999966 9
Q ss_pred eeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCC-E
Q 029082 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (199)
Q Consensus 89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~-v 167 (199)
|++|+||+|+++|++|+|+.++|++++|+++|+|+||++|+|+++++.|+++.+++||+|+|+|+|+|||.|+++++. |
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999666 9
Q ss_pred EEEEeCCCccChhHHHHHHH----hccchhh
Q 029082 168 AVTYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 168 vv~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
++||||||+||||+|||+|| |+||||-
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf 192 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVF 192 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEE
Confidence 99999999999999999987 9999984
No 2
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=4.7e-51 Score=366.23 Aligned_cols=165 Identities=23% Similarity=0.400 Sum_probs=160.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHHH
Q 029082 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (199)
Q Consensus 31 ~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~~ 109 (199)
+++++++++++||.|+++|.||+++.++++||++ ||+|++.||||++||++.+|+++||+||+||+|+++|+||+|+.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 799999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH--
Q 029082 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI-- 187 (199)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~-- 187 (199)
+|+|++|+++|+|+||+||||+++++.|+++.+++||+|+|+|+|+|+|.|+++++.|++|+||||+++||+|||++|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --hccchhhh
Q 029082 188 --HQLVIREI 195 (199)
Q Consensus 188 --~~lP~~~~ 195 (199)
|+||+|-+
T Consensus 185 ~~~~lPvvfv 194 (362)
T PLN02269 185 ALWDLPVIFV 194 (362)
T ss_pred hccCcCEEEE
Confidence 99998753
No 3
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.2e-51 Score=358.43 Aligned_cols=189 Identities=60% Similarity=0.982 Sum_probs=184.5
Q ss_pred CccccCCCCCCCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHH
Q 029082 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~ 80 (199)
|+||+++++..+|+|||+|+||+++++++.|+++++..+++|++|+++..+|..+.+.||||+|.||..+.|+||+-||+
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHH
Q 029082 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (199)
Q Consensus 81 ~~al~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k 160 (199)
++||+|.|.+++.||+-|++|.||.+++++++|+||+..+..|||+||+||++++.|++.+++||.+|+|+|+|+|+|+|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC-CEEEEEeCCCccChhHHHHHHHhc
Q 029082 161 MDRKD-ACAVTYFGDGGTSEEVSFLFLIHQ 189 (199)
Q Consensus 161 ~~g~~-~vvv~~~GDGatseG~f~Eal~~~ 189 (199)
++.++ +++|||||||++||||||.|+|++
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfA 240 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFA 240 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHH
Confidence 87766 799999999999999999998754
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=4.3e-48 Score=344.85 Aligned_cols=167 Identities=22% Similarity=0.354 Sum_probs=160.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCH
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~ 107 (199)
+.+.+++|+++++||.|+++|.||+++.++++||++ ||+|++.||||++||++.+|+++||+||+||+|+++|+||+|+
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 355789999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCC-------CCCEEEEEeCCCccChh
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEE 180 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g-------~~~vvv~~~GDGatseG 180 (199)
.++|+|+||+++|+|+||+||+|+++++.++++.++++|.|+|+|+|+|+|.|+++ .+++|+|++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999999999999999999999999999999998 48899999999999999
Q ss_pred HHHHHHH----hccchhhh
Q 029082 181 VSFLFLI----HQLVIREI 195 (199)
Q Consensus 181 ~f~Eal~----~~lP~~~~ 195 (199)
+|||++| |+||++-+
T Consensus 173 ~~~Ealn~A~~~~LPvifv 191 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFV 191 (341)
T ss_pred HHHHHHHHHhhcCCCEEEE
Confidence 9999985 99998754
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.4e-47 Score=338.07 Aligned_cols=161 Identities=25% Similarity=0.429 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHHHHHHH
Q 029082 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (199)
Q Consensus 35 ~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~~~l~e 113 (199)
+|+++++||+|+++|.||+++.+++|||++ +++|++.||||++||++.+|+++||+||+||+|+++|+||+|+.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH----hc
Q 029082 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI----HQ 189 (199)
Q Consensus 114 ~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~----~~ 189 (199)
++|+++|+|+||+||+|+++++.|+++.++++|.|+|+|+|+|+|.|+++.+.+++|++|||++++|.|||+|| |+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred cchhhh
Q 029082 190 LVIREI 195 (199)
Q Consensus 190 lP~~~~ 195 (199)
||++.+
T Consensus 161 lPvi~v 166 (315)
T TIGR03182 161 LPVIFV 166 (315)
T ss_pred cCEEEE
Confidence 998754
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2.8e-46 Score=341.75 Aligned_cols=166 Identities=26% Similarity=0.408 Sum_probs=160.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~ 108 (199)
.+.+++|+++++||+|+++|.||+++.++++||++ |++|++.||||++||++.+|+++||+|++||+|+++|+||+|+.
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 46889999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCC-------CCEEEEEeCCCccChhH
Q 029082 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEEV 181 (199)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~-------~~vvv~~~GDGatseG~ 181 (199)
++|+|++|+++|+|+||+|++|+++++.|+++.+++||.|+|+|+|+|+|.|++++ +++++||+|||++++|+
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 99999999999999999999999999999999999999999999999999999864 88999999999999999
Q ss_pred HHHHHH----hccchhhh
Q 029082 182 SFLFLI----HQLVIREI 195 (199)
Q Consensus 182 f~Eal~----~~lP~~~~ 195 (199)
|||+|| |+|||+-+
T Consensus 240 f~EaLn~A~~~~LPvIfV 257 (433)
T PLN02374 240 FFECLNMAALWKLPIVFV 257 (433)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999986 99998753
No 7
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=8.6e-45 Score=323.52 Aligned_cols=174 Identities=35% Similarity=0.501 Sum_probs=162.0
Q ss_pred CceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeec
Q 029082 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (199)
Q Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~ 92 (199)
|+||||++||.+.++...+++++++++++||+|+++|.||+++.++++||+++|+|++.||||++||++.+|+++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 68999999998776543567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEe
Q 029082 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (199)
Q Consensus 93 ~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~ 172 (199)
+||+|+++|+||+++.++|+|++|+.+|. . .+++.|+++.++++|.|+|.|+|+|+|.|+.+.+++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~----~-----~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS----W-----DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC----C-----CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999998653 1 24789999999999999999999999999999999999999
Q ss_pred CCCccChhHHHHHHH----hccchhhh
Q 029082 173 GDGGTSEEVSFLFLI----HQLVIREI 195 (199)
Q Consensus 173 GDGatseG~f~Eal~----~~lP~~~~ 195 (199)
|||++++|+|||+++ |+||++.+
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~V 178 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFF 178 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEE
Confidence 999999999999874 99998754
No 8
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.6e-45 Score=318.02 Aligned_cols=163 Identities=26% Similarity=0.448 Sum_probs=158.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~ 108 (199)
...+++|+++++||+|+++|+||..+.+++++++| ||+|.+.||||++||+-++|++.|.++++||+|++++.||+++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 45679999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH-
Q 029082 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI- 187 (199)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~- 187 (199)
++|+|++|+.+||++|++||||++.++ |++.+++||+|+|.++|+|+|+||++++.|+++++||||.|||++||++|
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999975
Q ss_pred ---hccchhh
Q 029082 188 ---HQLVIRE 194 (199)
Q Consensus 188 ---~~lP~~~ 194 (199)
|+||++-
T Consensus 211 A~LW~LP~IF 220 (394)
T KOG0225|consen 211 AALWKLPVIF 220 (394)
T ss_pred HHHhCCCEEE
Confidence 9999974
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=2.2e-44 Score=314.45 Aligned_cols=155 Identities=36% Similarity=0.593 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcc-cccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCC
Q 029082 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (199)
Q Consensus 41 lyr~M~~~R~~d~~~~~l~rqG~ig-~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~ 119 (199)
+||+|+++|.||+++.+++|||++. |+|++.||||++||++.+|+|+||++|+||+|+++|+||+|+.++|+|++|+++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999996 699999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH----hccchhhh
Q 029082 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI----HQLVIREI 195 (199)
Q Consensus 120 g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~----~~lP~~~~ 195 (199)
|+++||+||+|+++++.|+++.++++|.++|.|+|+|+|.|+++.+++++|++|||++++|.|||+++ ++||++.+
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 99998754
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=3.2e-41 Score=295.94 Aligned_cols=152 Identities=36% Similarity=0.564 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCC
Q 029082 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (199)
Q Consensus 42 yr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~ 121 (199)
||.|++.|..|.++..++++|+.+++|++.||||++|+++.+|+|+||+||+||+|+++|++|+++.++|+|++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 78888888888898999999988999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH----hccchhh
Q 029082 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 122 ~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
++|+. ++|+.+++.|+++.++++|+|+|+|+|+|+|.|+++++.|++||||||+++||+|||+|| |+||||-
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvif 156 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIF 156 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEE
Confidence 88888 899999999999999999999999999999999999999999999999999999999986 9999974
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.95 E-value=2.7e-27 Score=232.11 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHh------hccCCCeeec-CCCchHHHHh--
Q 029082 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (199)
Q Consensus 32 ~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~------al~~~D~~~~-~yR~~~~~l~-- 102 (199)
++++++.+++|+.|+++|.||+.+.+.+..++.. ++.|||++.+|+.. +++++|++++ +||+|+.+|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 7899999999999999999999999999887755 68999999999988 5668999999 6999999999
Q ss_pred cCCCHHHHHHHhhcCC-------CCCCC----------CCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCC
Q 029082 103 RGFSMQEFANQCFGNK-------ADYGK----------GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (199)
Q Consensus 103 rG~~~~~~l~e~~g~~-------~g~~~----------Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~ 165 (199)
+|+|++++|+|++|+. +|.++ |+++++|+.... ..|++|++.|+|+|.|+|.++++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~Pva~G~A~A~q~~~~~ 336 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNPVVEGSVRARQDRRGD 336 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccCeehhHHHHHHHhcCC
Confidence 5999999999999997 44444 666777765543 3489999999999999999999888
Q ss_pred ------CEEEEEeCCCcc-ChhHHHHHHH----hccc
Q 029082 166 ------ACAVTYFGDGGT-SEEVSFLFLI----HQLV 191 (199)
Q Consensus 166 ------~vvv~~~GDGat-seG~f~Eal~----~~lP 191 (199)
.|++|++||||+ +||.|||+|| |+||
T Consensus 337 ~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp 373 (924)
T PRK09404 337 GQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYR 373 (924)
T ss_pred cccccceEEEEEecCccccCCChHHHHHHHHHhcCCC
Confidence 899999999998 7999999986 9998
No 12
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.92 E-value=2.9e-25 Score=191.87 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=114.0
Q ss_pred ccCCCchhHHHHHHHhhccC------CCeeecC-CCchHHHHh--cCCCHHHHHHHhhcCCC---CCCCCCCCCcccCCC
Q 029082 67 YLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSN 134 (199)
Q Consensus 67 ~~~~~GqEa~~vg~~~al~~------~D~~~~~-yR~~~~~l~--rG~~~~~~l~e~~g~~~---g~~~Gr~~~~H~~~~ 134 (199)
.+++.|+|++++++...+++ +||+++. ||++...|+ +|+|++++|+|++|+.+ +.+.|++.+.|++.+
T Consensus 14 rfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~ 93 (265)
T cd02016 14 RFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYS 93 (265)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccC
Confidence 33699999999999999987 7999999 999999999 99999999999999987 556789999999766
Q ss_pred C-----------CccccccccccccchhhhHHHHHHHhCC-----CCCEEEEEeCCCcc-ChhHHHHHHH----hccc
Q 029082 135 K-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEEVSFLFLI----HQLV 191 (199)
Q Consensus 135 ~-----------~~~~~~~~~vG~q~~~A~G~A~A~k~~g-----~~~vvv~~~GDGat-seG~f~Eal~----~~lP 191 (199)
. .++++++|+||++.|+|+|+|+|.|+++ ++.|++|++||||+ +||.|||+|| |+||
T Consensus 94 ~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp 171 (265)
T cd02016 94 SDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171 (265)
T ss_pred cccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCC
Confidence 5 6789999999999999999999999998 48899999999995 7999999986 7777
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.87 E-value=2.9e-22 Score=189.67 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=120.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhcc---CCCeee--cCCCchHHHHhc
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVLLWR 103 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~---~~D~~~--~~yR~~~~~l~r 103 (199)
..+++.++|.++= ..+|. .-++++++. |+++++.|+ +.++++.++. |.|+++ ++||+|++.+.+
T Consensus 12 ~~~l~~~~l~~l~---~~ir~-----~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 12 LKKLSLDELEQLA---SEIRT-----ALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred HhhCCHHHHHHHH---HHHHH-----HHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 3455655554432 22333 233344666 599999999 7778888887 899999 999999999999
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHH
Q 029082 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSF 183 (199)
Q Consensus 104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~ 183 (199)
|.++..++.+++|+.+|++++++. .|. . ..++++|+++++|+|+|+|.|+++++.+++|++|||++++|.+|
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s-~~~------~-~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~ 153 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEES-EHD------F-FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLAL 153 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCC-CCC------C-cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHH
Confidence 999999999999999999998873 331 1 36688999999999999999999999999999999999999999
Q ss_pred HHHH----hccchhhh
Q 029082 184 LFLI----HQLVIREI 195 (199)
Q Consensus 184 Eal~----~~lP~~~~ 195 (199)
||+| |++|++-|
T Consensus 154 EAln~A~~~k~~li~I 169 (581)
T PRK12315 154 EGLNNAAELKSNLIII 169 (581)
T ss_pred HHHHHHHhhCCCEEEE
Confidence 9986 88888754
No 14
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.75 E-value=1.6e-17 Score=163.32 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccCCCchhHHHHHHHhh------ccCCCeeecC-CCchHHHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLL 101 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~r-qG~ig~~~~~~GqEa~~vg~~~a------l~~~D~~~~~-yR~~~~~l 101 (199)
...+++++-+++++.++.+-.||+-+...+. |+| ++..|-|..-.++-.. ..-+|++++. ||++...|
T Consensus 183 ~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL 258 (929)
T TIGR00239 183 RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR----FSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVL 258 (929)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce----eecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHH
Confidence 3578999999999999999999988755443 333 3446667664443333 3457999999 99999999
Q ss_pred h--cCCCHHHHHHHhhcCCCCC-CCCCCCC-cccCC-----------CCCccccccccccccchhhhHHHHHHHhCCC--
Q 029082 102 W--RGFSMQEFANQCFGNKADY-GKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK-- 164 (199)
Q Consensus 102 ~--rG~~~~~~l~e~~g~~~g~-~~Gr~~~-~H~~~-----------~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~-- 164 (199)
+ +|.|++++|+|+.|+..+. +.|++.. .|++. ...++.++.|+++++.|+|+|.|+|.++++.
T Consensus 259 ~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~ 338 (929)
T TIGR00239 259 VNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDS 338 (929)
T ss_pred HHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCc
Confidence 9 9999999999999988763 4578777 88885 4567899999999999999999999999876
Q ss_pred ----CCEEEEEeCCCcc-ChhHHHHHHH----hccch
Q 029082 165 ----DACAVTYFGDGGT-SEEVSFLFLI----HQLVI 192 (199)
Q Consensus 165 ----~~vvv~~~GDGat-seG~f~Eal~----~~lP~ 192 (199)
+.|++|++||||+ +||.|||+|| |+||+
T Consensus 339 ~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPv 375 (929)
T TIGR00239 339 PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSV 375 (929)
T ss_pred ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCC
Confidence 6799999999995 8999999986 99996
No 15
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.58 E-value=1.9e-14 Score=121.21 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchH------HHH
Q 029082 37 VAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPG------VLL 101 (199)
Q Consensus 37 ~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~------~~l 101 (199)
...++-+....+|+-..++.....+|++|--.++. |..+|.+...|+ | .|+++.+ .+|+ .+.
T Consensus 6 ~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~--eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 6 SVDELERIAREIRRNIVRMLANAGSGHVGGSLSVV--EILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 45667778888999999999999999887666666 888888888753 3 3888888 6776 334
Q ss_pred hcCCCHHHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh
Q 029082 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE 180 (199)
Q Consensus 102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG 180 (199)
.+|+-+++-+.. |++. |...|.|... +..++..+++++|.++++|+|+|++.|+++.+.-|++..|||...||
T Consensus 83 e~G~~p~eeL~~-~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELET-FRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHH-hccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 589888887775 6765 5667889854 66699999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 029082 181 VSFLFL 186 (199)
Q Consensus 181 ~f~Eal 186 (199)
+.|||+
T Consensus 157 ~~WEAa 162 (243)
T COG3959 157 QVWEAA 162 (243)
T ss_pred cHHHHH
Confidence 999996
No 16
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.50 E-value=4.3e-14 Score=119.97 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=89.6
Q ss_pred CCchhHHHHHHHhhccC-CCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCcccccccccccc
Q 029082 70 TSGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 148 (199)
Q Consensus 70 ~~GqEa~~vg~~~al~~-~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q 148 (199)
+.||++.++.+...|+. .|++||.||.+. .| +++++.++ +. ..| .++|......++...++++|.+
T Consensus 1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qf-s~----~gg--~psH~~~~tpGi~~~~G~LG~g 67 (227)
T cd02011 1 GPGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQF-SF----PGG--IPSHAAPETPGSIHEGGELGYS 67 (227)
T ss_pred CCChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhc-CC----CCC--CCCCCcccCCCeeecccchhhH
Confidence 36999999999899987 599999999876 22 26688884 32 123 7899988889999999999999
Q ss_pred chhhhHHHHHHHhCCCCCEEEEEeCCCccChhHH---HHHHHhc--------cchhh
Q 029082 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVS---FLFLIHQ--------LVIRE 194 (199)
Q Consensus 149 ~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f---~Eal~~~--------lP~~~ 194 (199)
+++|+|+| +++.+.+|+|++|||+++||.+ ||+.++. |||+.
T Consensus 68 Ls~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld 120 (227)
T cd02011 68 LSHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 120 (227)
T ss_pred HHHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEE
Confidence 99999997 4788899999999999999998 7765555 88875
No 17
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.38 E-value=2.5e-12 Score=123.68 Aligned_cols=139 Identities=19% Similarity=0.214 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--CC-------CeeecCCCchHH------HHhcCC--CH
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~~-------D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
...+|..-.++......|++|...++. |...+.....|+ |+ |.++.+ .+|+. +...|. +.
T Consensus 4 ~~~iR~~~~~~~~~a~~GH~g~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~ 80 (653)
T TIGR00232 4 ANAIRHLAVDAIQKAKSGHPGAPLGAA--PIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSI 80 (653)
T ss_pred HHHHHHHHHHHHHhcCCCCccchhHHH--HHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCH
Confidence 345777777777777788887776666 666665555664 33 877776 56763 345685 55
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCCc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG 176 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDGa 176 (199)
+++ .+ |.+. |...+.|... ...++...++++|.++++|+|+|+|.|+++ .+.+++|++|||+
T Consensus 81 e~L-~~-fr~~-----~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~ 153 (653)
T TIGR00232 81 EDL-KQ-FRQL-----HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGC 153 (653)
T ss_pred HHH-Hh-cccC-----CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccc
Confidence 553 33 4443 3344667643 456889999999999999999999999863 4789999999999
Q ss_pred cChhHHHHHHH----hccchh
Q 029082 177 TSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 177 tseG~f~Eal~----~~lP~~ 193 (199)
++||.+|||++ |+||-|
T Consensus 154 l~EG~~~EA~~~A~~~~L~nL 174 (653)
T TIGR00232 154 LQEGISYEVASLAGHLKLGKL 174 (653)
T ss_pred ccccHHHHHHHHHHHhCCCcE
Confidence 99999999974 899943
No 18
>PRK12754 transketolase; Reviewed
Probab=99.37 E-value=4.3e-12 Score=122.18 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--CC-------CeeecCCCchHH------HHhcCC--CH
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~~-------D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
...+|.+-..+......|++|.-.++. |...+.....|+ |+ |.++.+ .+|+. +...|. +.
T Consensus 8 ~~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCH
Confidence 445777777777777788887777766 666666656664 33 887777 56773 334675 66
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCCc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG 176 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDGa 176 (199)
+++ .+ |.+. |...+.|.-. ...++...++++|.++++|+|+|+|.|+++ .+.+++|++|||+
T Consensus 85 e~L-~~-fr~~-----gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12754 85 EEL-KN-FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (663)
T ss_pred HHH-HH-hccC-----CCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcch
Confidence 654 33 4543 3334567643 356899999999999999999999999986 4789999999999
Q ss_pred cChhHHHHHHH----hccchh
Q 029082 177 TSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 177 tseG~f~Eal~----~~lP~~ 193 (199)
++||.+|||++ |+||.|
T Consensus 158 l~EG~~~EA~~~A~~~kL~nL 178 (663)
T PRK12754 158 MMEGISHEVCSLAGTLKLGKL 178 (663)
T ss_pred hhchHHHHHHHHHHHhCCCCE
Confidence 99999999974 899954
No 19
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.36 E-value=3.1e-12 Score=106.08 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=71.3
Q ss_pred CCCeeecCCCchHH---HHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCC-CCccccccccccccchhhhHHHHHHHh
Q 029082 86 NDDFVVPQYREPGV---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKM 161 (199)
Q Consensus 86 ~~D~~~~~yR~~~~---~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~~~vG~q~~~A~G~A~A~k~ 161 (199)
+.|.++.+ .+|+. +...|. .+-|.+ |.+. |. .+.|.... ..++.-.++++|.++|+|+|+|+|.|+
T Consensus 24 ~rDr~ils-~gH~~~~~~~~~g~--~~~l~~-~~~~-----~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~ 93 (195)
T cd02007 24 PKDKIIWD-VGHQAYPHKILTGR--RDQFHT-LRQY-----GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL 93 (195)
T ss_pred CCCeEEEe-cccHHHHHHHHHCC--HHHHhh-hhcC-----CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH
Confidence 56887777 55653 333454 222333 3332 22 45554322 245667899999999999999999999
Q ss_pred CCCCCEEEEEeCCCccChhHHHHHHH----hccchhh
Q 029082 162 DRKDACAVTYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 162 ~g~~~vvv~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
+++++.++|++|||+.+||.+|||++ +++|++-
T Consensus 94 ~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~ 130 (195)
T cd02007 94 KGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV 130 (195)
T ss_pred hCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999975 6777754
No 20
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.35 E-value=4.4e-12 Score=122.29 Aligned_cols=148 Identities=10% Similarity=0.028 Sum_probs=100.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecCCCchHH---HHhcCC
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGV---LLWRGF 105 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~yR~~~~---~l~rG~ 105 (199)
..+++.+++.+ ....+|..-.++.... .|+++.-.++. |.+.+.. ..++ |.|.++-+ .+|.. .+..|.
T Consensus 43 lk~l~~~~l~~---la~~iR~~ii~~~~~~-~GH~g~~Ls~v--el~~aL~-~~~~~p~Dr~i~s-~GH~ay~~~~l~gr 114 (677)
T PLN02582 43 MKNLSVKELKQ---LADELRSDVIFNVSKT-GGHLGSSLGVV--ELTVALH-YVFNAPQDKILWD-VGHQSYPHKILTGR 114 (677)
T ss_pred HhhCCHHHHHH---HHHHHHHHHHHHHHhc-CCCcCccccHH--HHHHHHH-HhhCCCCCeEEEE-CcchHHHHHHHHcc
Confidence 34566666554 3455666555555432 57777666666 7765543 4564 88998887 56654 333343
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHH
Q 029082 106 SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFL 184 (199)
Q Consensus 106 ~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~E 184 (199)
.+-|.. +.+. |. .+.|... ...+....++++|++++.|+|+|+|.|+++++++++|++|||++++|.+||
T Consensus 115 --~~~l~~-~r~~-----g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~E 185 (677)
T PLN02582 115 --RDKMHT-MRQT-----NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYE 185 (677)
T ss_pred --HHHhcc-cccC-----CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHH
Confidence 111222 2222 22 4555532 235667789999999999999999999999999999999999999999999
Q ss_pred HHH----hccchhh
Q 029082 185 FLI----HQLVIRE 194 (199)
Q Consensus 185 al~----~~lP~~~ 194 (199)
|+| |++|++-
T Consensus 186 aln~a~~~~~~li~ 199 (677)
T PLN02582 186 AMNNAGYLDSDMIV 199 (677)
T ss_pred HHHHHHhhCcCEEE
Confidence 986 6777654
No 21
>PRK12753 transketolase; Reviewed
Probab=99.35 E-value=5.8e-12 Score=121.37 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHH------HHhcCC--CH
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
...+|.+-..+......|++|...++. |...+.....|+ | .|.++.+ .+|+. ....|. +.
T Consensus 8 a~~iR~~~~~~~~~a~~GH~g~~ls~~--~i~~~Ly~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 8 ANAIRALSMDAVQKANSGHPGAPMGMA--DIAEVLWRDFLKHNPTNPTWYDRDRFILS-NGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHH--HHHHHHHHHHhCCCccCCCCCCCCcEEEe-cccHHHHHHHHHHHhCCCCCH
Confidence 344666666666665678877666655 666555545563 3 3776666 56664 445574 55
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCCc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDGa 176 (199)
++ |.. |.+. |...+.|... ...++...++++|++++.|+|+|+|.|+++. +.+++|++|||+
T Consensus 85 e~-L~~-fr~~-----~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGe 157 (663)
T PRK12753 85 EE-LKN-FRQL-----HSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGC 157 (663)
T ss_pred HH-HHH-hccC-----CCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCc
Confidence 54 333 4443 2233557633 3568889999999999999999999999863 689999999999
Q ss_pred cChhHHHHHHH----hccch
Q 029082 177 TSEEVSFLFLI----HQLVI 192 (199)
Q Consensus 177 tseG~f~Eal~----~~lP~ 192 (199)
++||.+|||++ |+||-
T Consensus 158 l~EG~~~EA~~~A~~~kL~n 177 (663)
T PRK12753 158 LMEGISHEVCSLAGTLGLGK 177 (663)
T ss_pred cccHHHHHHHHHHHHHCCCC
Confidence 99999999985 89984
No 22
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.34 E-value=4.3e-12 Score=121.41 Aligned_cols=148 Identities=16% Similarity=0.060 Sum_probs=100.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecCCCchHH---HHhcCC
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGV---LLWRGF 105 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~yR~~~~---~l~rG~ 105 (199)
..+++.+++.++ ...+|.+=..+.. ...|+++.-.++. |.+.+ +...++ +.|.++-+ .+|.. .+..|.
T Consensus 10 l~~l~~~~l~~l---a~~iR~~~i~~~~-~~~GH~g~~ls~v--el~~a-L~~~~~~~rDr~i~s-~GH~~Y~~~~~~G~ 81 (617)
T TIGR00204 10 LRLLSIDELEKL---CDELRRYLLESVS-ASGGHLASGLGTV--ELTVA-LHYVFNTPKDQFIWD-VGHQAYPHKLLTGR 81 (617)
T ss_pred HhhCCHHHHHHH---HHHHHHHHHHHHh-ccCCCcCcchhHH--HHHHH-HHhhCCCCCCcEEEe-cchHHHHHHHHhCc
Confidence 446666665544 4445555555544 3667777666666 66654 345676 67988877 56664 344564
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccc-cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHH
Q 029082 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFL 184 (199)
Q Consensus 106 ~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~-~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~E 184 (199)
. +-|.. +.+. |. .+.|....+..+. ..+++.|+++++|+|+|+|.|+++++.+++|++|||+++||.+||
T Consensus 82 -~-~~l~~-~r~~-----g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 82 -R-EKFST-LRQK-----KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred -H-HHhcc-hhhc-----CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 1 22222 2222 22 4555543333333 477889999999999999999999999999999999999999999
Q ss_pred HHH----hccchhh
Q 029082 185 FLI----HQLVIRE 194 (199)
Q Consensus 185 al~----~~lP~~~ 194 (199)
|++ |+||++-
T Consensus 153 a~~~a~~~~l~~i~ 166 (617)
T TIGR00204 153 ALNHAGDLKTDMIV 166 (617)
T ss_pred HHHHHHhcCCCEEE
Confidence 986 8898854
No 23
>PTZ00089 transketolase; Provisional
Probab=99.31 E-value=1.3e-11 Score=118.86 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC--CH
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
...+|.+-..+......|++|.-.++. |.+.+-....|+ +.|.++.+ .+|+. ....|. +.
T Consensus 10 a~~iR~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~l~~~~~~~~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~ 86 (661)
T PTZ00089 10 ANEIRCLSADLVQKANSGHPGAPMGMA--PIAHILWSEVMKYNPKDPRWINRDRFVLS-NGHASALLYSMLHLTGYDLSM 86 (661)
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhHHH--HHHHHHHHHhhcCCCcCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCH
Confidence 344666666666555667877666666 666554434554 34886666 45654 445674 44
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCCc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDGa 176 (199)
++ +.+ |.+..+ ..+.|.-. ...++...++++|++++.|+|+|+|.|+++. +..++|++|||+
T Consensus 87 ~~-l~~-fr~~~s-----~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~ 159 (661)
T PTZ00089 87 ED-LKN-FRQLGS-----RTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGC 159 (661)
T ss_pred HH-HHh-cCCCCC-----CCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccc
Confidence 44 444 444322 22445432 3457778899999999999999999999764 789999999999
Q ss_pred cChhHHHHHHH----hccch
Q 029082 177 TSEEVSFLFLI----HQLVI 192 (199)
Q Consensus 177 tseG~f~Eal~----~~lP~ 192 (199)
++||.+|||++ |+||-
T Consensus 160 l~eG~~~EAl~~A~~~~L~n 179 (661)
T PTZ00089 160 LQEGVSQEALSLAGHLGLEK 179 (661)
T ss_pred hhhHHHHHHHHHHHHhCCCC
Confidence 99999999985 88884
No 24
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.31 E-value=2.3e-12 Score=113.57 Aligned_cols=100 Identities=20% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCCchHHHHhcCCCHH-HHHHHhhcCCC------CCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCC
Q 029082 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (199)
Q Consensus 93 ~yR~~~~~l~rG~~~~-~~l~e~~g~~~------g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~ 165 (199)
.||+|+.+...|.++. .++.+++|+.+ ||+.++++++|+... ++...++++|.++++|+|+++|.|+++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999999998 99999999887 888888888776664 67888999999999999999999998887
Q ss_pred CEEEE-EeCCCccChhHHHHHHH----hccchhhh
Q 029082 166 ACAVT-YFGDGGTSEEVSFLFLI----HQLVIREI 195 (199)
Q Consensus 166 ~vvv~-~~GDGatseG~f~Eal~----~~lP~~~~ 195 (199)
.+.|+ ++|||+++++.| |+++ +++||+-+
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~v 125 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYI 125 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEE
Confidence 66666 999999999997 9874 88998643
No 25
>PLN02790 transketolase
Probab=99.30 E-value=1.5e-11 Score=118.31 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC---CHHHH
Q 029082 49 QTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF---SMQEF 110 (199)
Q Consensus 49 R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~---~~~~~ 110 (199)
|.+-..+......|++|.-.++. |.+.+-....|+ +.|.++.+ .+|+. ....|. +.++
T Consensus 2 R~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~~~~- 77 (654)
T PLN02790 2 RFLAIDAVNKANSGHPGLPMGCA--PMGHVLYDEVMKYNPKNPYWFNRDRFVLS-AGHGCMLQYALLHLAGYDSVQMED- 77 (654)
T ss_pred hHHHHHHHHhcCCCcCCchhhHH--HHHHHHHHhhcccCCCCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCCHHH-
Confidence 44444444445567777666666 666554444453 45888777 56664 445675 5555
Q ss_pred HHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHh-----CCC-----CCEEEEEeCCCccCh
Q 029082 111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKM-----DRK-----DACAVTYFGDGGTSE 179 (199)
Q Consensus 111 l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~-----~g~-----~~vvv~~~GDGatse 179 (199)
|.. |.+. |...+.|... ...++...++++|+++++|+|+|+|.|+ +++ +.+|+|++|||+++|
T Consensus 78 l~~-~r~~-----~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~e 151 (654)
T PLN02790 78 LKQ-FRQW-----GSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQME 151 (654)
T ss_pred HHH-hccC-----CCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccc
Confidence 333 4544 2223456532 3468999999999999999999999995 343 789999999999999
Q ss_pred hHHHHHHH----hccc
Q 029082 180 EVSFLFLI----HQLV 191 (199)
Q Consensus 180 G~f~Eal~----~~lP 191 (199)
|.+|||++ |+||
T Consensus 152 G~~~EAl~~A~~~~L~ 167 (654)
T PLN02790 152 GISNEAASLAGHWGLG 167 (654)
T ss_pred hHHHHHHHHHHHhCCC
Confidence 99999985 8998
No 26
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.24 E-value=3.5e-11 Score=114.27 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=103.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecCCCchHHH---HhcC
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGVL---LWRG 104 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~yR~~~~~---l~rG 104 (199)
+..+++.+++.++ ...+|.+-.++... ..|++|.-.++. |...+- ...++ +.|.++.+ .+|+.+ ...|
T Consensus 15 ~~~~~~~~~l~~~---a~~iR~~~~~~~~~-~~gH~g~~ls~~--~i~~~L-~~~~~~~rDr~ils-~GH~~y~~~~~~g 86 (580)
T PRK05444 15 DLKKLSEEELPQL---ADEIREFLIDVVSK-TGGHLGSNLGVV--ELTVAL-HYVFDTPKDRIIWD-VGHQAYPHKILTG 86 (580)
T ss_pred HHhcCCHHHHHHH---HHHHHHHHHHHHHh-cCCCcCCCccHH--HHHHHH-HHhcCCCCccEEEe-ccHHHHHHHHHhC
Confidence 4456666665543 55577776666654 578888777777 766543 34564 56888877 677643 3345
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcccCCC-CCccccccccccccchhhhHHHHHHHhC-CCCCEEEEEeCCCccChhHH
Q 029082 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD-RKDACAVTYFGDGGTSEEVS 182 (199)
Q Consensus 105 ~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~~~vG~q~~~A~G~A~A~k~~-g~~~vvv~~~GDGatseG~f 182 (199)
. . +-|.. |.+. |. .+.|.... ..++...++++|.++|.|+|+|+|.|++ +.++.++|++|||+.+||.+
T Consensus 87 ~-~-~~l~~-~~~~-----~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~ 157 (580)
T PRK05444 87 R-R-DRFDT-LRQK-----GG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMA 157 (580)
T ss_pred c-H-HHhcC-cccC-----CC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHH
Confidence 4 1 22222 3332 22 34565443 3678889999999999999999999999 58889999999999999999
Q ss_pred HHHHH----hccchh
Q 029082 183 FLFLI----HQLVIR 193 (199)
Q Consensus 183 ~Eal~----~~lP~~ 193 (199)
||+++ +++|++
T Consensus 158 ~Eal~~A~~~~~nli 172 (580)
T PRK05444 158 FEALNNAGDLKSDLI 172 (580)
T ss_pred HHHHHHHHhhCCCEE
Confidence 99974 678875
No 27
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.23 E-value=7.8e-11 Score=101.05 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCCCHHHHHH
Q 029082 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGFSMQEFAN 112 (199)
Q Consensus 48 ~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~~~~~~l~ 112 (199)
+|..-.++......|+++...+.. |...+.....|+ +.|.++.+ .+|+. +...|.-..+-+.
T Consensus 3 ~R~~~~~~~~~~~~gh~g~~~s~~--~i~~~L~~~~~~~~~~~~~~~~rd~~v~s-~gH~~~~~ya~l~~~g~~~~~~l~ 79 (255)
T cd02012 3 IRRLSIDMVQKAGSGHPGGSLSAA--DILAVLYFKVLKYDPADPKWPNRDRFVLS-KGHASPALYAVLALAGYLPEEDLK 79 (255)
T ss_pred HHHHHHHHHHhcCCCCcCccHHHH--HHHHHHHHHHhCcCCcCCCCCCCCeEEEc-CCcHHHHHHHHHHHcCCCCHHHHH
Confidence 455555555555567776666665 666665555553 23665544 34552 3345754444444
Q ss_pred HhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH----
Q 029082 113 QCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI---- 187 (199)
Q Consensus 113 e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~---- 187 (199)
. |... |...+.|... ...++...++++|.++|.|+|+|+|.|+++.++.|+|++|||+..+|.+||+++
T Consensus 80 ~-~~~~-----gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~ 153 (255)
T cd02012 80 T-FRQL-----GSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGH 153 (255)
T ss_pred H-hccc-----CCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHH
Confidence 3 3433 3335566543 234778888999999999999999999999999999999999999999999974
Q ss_pred hccchhh
Q 029082 188 HQLVIRE 194 (199)
Q Consensus 188 ~~lP~~~ 194 (199)
++||.+.
T Consensus 154 ~~l~~li 160 (255)
T cd02012 154 YKLDNLI 160 (255)
T ss_pred cCCCcEE
Confidence 8888543
No 28
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.19 E-value=1.4e-10 Score=111.25 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecCCCchHHHHhc---CCCHHHHHHHhhcC
Q 029082 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGVLLWR---GFSMQEFANQCFGN 117 (199)
Q Consensus 42 yr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~yR~~~~~l~r---G~~~~~~l~e~~g~ 117 (199)
-+....+|..=.++.... .|+++.-.++. |.+.+ +...++ |.|.++-+ .+|..+..+ |. .+-|.. +.+
T Consensus 85 ~~la~eiR~~ii~~~~~~-~GHlgssLs~v--El~~a-L~~vf~~p~DriI~s-~GHqaya~~~ltgr--~~~l~t-~r~ 156 (641)
T PLN02234 85 KVLSDELRSDVIFNVSKT-GGHLGSNLGVV--ELTVA-LHYIFNTPHDKILWD-VGHQSYPHKILTGR--RGKMKT-IRQ 156 (641)
T ss_pred HHHHHHHHHHHHHHHhhc-CCCccccchHH--HHHHH-HHHhcCCCCCeEEEe-cchhHHHHHHHHhh--hhhhcc-ccc
Confidence 344555665554554433 67777666666 76644 345565 88998888 677643322 22 111211 222
Q ss_pred CCCCCCCCCCCcccCCC-CCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHHh
Q 029082 118 KADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLIH 188 (199)
Q Consensus 118 ~~g~~~Gr~~~~H~~~~-~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~~ 188 (199)
. |. .+.|.... ..++...++++|+.++.|+|+|+|.|+++.++-|+|.+|||+.++|..|||+++
T Consensus 157 ~-----gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~ 222 (641)
T PLN02234 157 T-----NG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNN 222 (641)
T ss_pred C-----CC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHH
Confidence 1 22 45565332 357778899999999999999999999999999999999999999999999874
No 29
>PRK05899 transketolase; Reviewed
Probab=99.17 E-value=2.6e-10 Score=109.22 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC
Q 029082 41 MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF 105 (199)
Q Consensus 41 lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~ 105 (199)
+-+....+|..-.++......|++|...++. |...+.....|+ +.|.++.+ .+|+. +...|.
T Consensus 8 l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~--~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s-~GH~~~~~Ya~l~~~G~ 84 (624)
T PRK05899 8 LQLLANAIRVLSIDAVQKANSGHPGMPMGAA--DIAYVLWTRFLRHDPKNPKWPNRDRFVLS-AGHGSMLLYSLLHLAGY 84 (624)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccchHHHH--HHHHHHHHHhhcCCCCCCCCCCCCEEEEE-ChhHHHHHHHHHHHcCC
Confidence 3455666787777777666778887766666 777665544554 24888776 56764 556786
Q ss_pred --CHHHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEe
Q 029082 106 --SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYF 172 (199)
Q Consensus 106 --~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~ 172 (199)
+.++ +.. +.+. |...+.|... ...++...++++|.++|.|+|+|+|.+++++ ++.++|++
T Consensus 85 ~~~~~~-l~~-~~~~-----~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~ 157 (624)
T PRK05899 85 DLSIDD-LKN-FRQL-----GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC 157 (624)
T ss_pred CCCHHH-HHH-hcCC-----CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEE
Confidence 4433 444 3332 2223445432 2356777899999999999999999999887 88999999
Q ss_pred CCCccChhHHHHHHH----hccchh
Q 029082 173 GDGGTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 173 GDGatseG~f~Eal~----~~lP~~ 193 (199)
|||+.++|.+|||++ ++||.+
T Consensus 158 GDG~~~~g~~~Eal~~A~~~~L~~l 182 (624)
T PRK05899 158 GDGDLMEGISHEACSLAGHLKLGNL 182 (624)
T ss_pred CcchhhchHHHHHHHHHHHhCCCCE
Confidence 999999999999864 899854
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.16 E-value=3.9e-10 Score=102.26 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHc------CCcccccCCCchhHHHHHHHhhccC------CCeeecCCCchHH------HHhcC
Q 029082 43 NDMVTLQTMDTIFYEAQRQ------GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRG 104 (199)
Q Consensus 43 r~M~~~R~~d~~~~~l~rq------G~ig~~~~~~GqEa~~vg~~~al~~------~D~~~~~yR~~~~------~l~rG 104 (199)
|....+|..-..+...... |++|...++. |.+.+.....|+. .|.++ + .+|+. +...|
T Consensus 6 ~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~a--dI~~aLy~~~l~~~p~~~~RDRvl-S-kGHas~~lYA~L~l~G 81 (386)
T cd02017 6 RIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAA--TLYEVGFNHFFRARGEGGGGDLVY-F-QGHASPGIYARAFLEG 81 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHH--HHHHHHHHHhcCCCCCCCCCCEEE-e-CCcccHHHHHHHHHcC
Confidence 3455666666666655555 6666666666 6666555566764 68855 4 67763 44568
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcccCC--CCCccccccccccccchhhhHHHHHHHh-------CCCCCEEEEEeCCC
Q 029082 105 FSMQEFANQCFGNKADYGKGRQMPIHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDG 175 (199)
Q Consensus 105 ~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--~~~~~~~~~~~vG~q~~~A~G~A~A~k~-------~g~~~vvv~~~GDG 175 (199)
.-..+-|.. |.+..+. ...+.|... ...++..+++++|.++++|+|+|+|.|+ ++.+.-++|++|||
T Consensus 82 ~~~~edL~~-fr~~gs~---p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDG 157 (386)
T cd02017 82 RLTEEQLDN-FRQEVGG---GGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDG 157 (386)
T ss_pred CCCHHHHHh-hccCCCC---CCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEccc
Confidence 533344555 4443221 123344322 1234888999999999999999999998 66788899999999
Q ss_pred ccChhHHHHHHH
Q 029082 176 GTSEEVSFLFLI 187 (199)
Q Consensus 176 atseG~f~Eal~ 187 (199)
..+||..|||++
T Consensus 158 El~EG~vwEA~~ 169 (386)
T cd02017 158 EMDEPESLGAIG 169 (386)
T ss_pred ccccHHHHHHHH
Confidence 999999999974
No 31
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.12 E-value=8.4e-11 Score=105.04 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccC---------CCeeecCCCchHHH------HhcCC--C
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREPGVL------LWRGF--S 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~---------~D~~~~~yR~~~~~------l~rG~--~ 106 (199)
....+|..-..+......|++|...+++ |...+.....|+. .|.++.+ .+|+.. ..+|+ +
T Consensus 4 ~a~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~ 80 (332)
T PF00456_consen 4 IANTIRKLILDMVQKAGSGHPGSSLSAA--DILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLS 80 (332)
T ss_dssp HHHHHHHHHHHHHHHHT-S-SHHHHHHH--HHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-
T ss_pred HHHHHHHHHHHHHHHhCCCCCcchHHHH--HHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCC
Confidence 3456788888888888889887766666 6676666666752 4888888 778732 23576 4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDG 175 (199)
.++ +.+ |.+. |...+.|.. ....++..+++++|.++++|+|+|+|.|+.+ .+..|+|++|||
T Consensus 81 ~~~-L~~-fr~~-----~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDG 153 (332)
T PF00456_consen 81 EED-LKT-FRQL-----GSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDG 153 (332)
T ss_dssp HHH-HTT-TTST-----TSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHH
T ss_pred HHH-HHH-hccC-----CCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCc
Confidence 443 333 3432 445667774 4567888899999999999999999998753 367899999999
Q ss_pred ccChhHHHHHH
Q 029082 176 GTSEEVSFLFL 186 (199)
Q Consensus 176 atseG~f~Eal 186 (199)
..+||..|||+
T Consensus 154 el~EG~~~EA~ 164 (332)
T PF00456_consen 154 ELQEGSVWEAA 164 (332)
T ss_dssp HHHSHHHHHHH
T ss_pred cccchhhHHHH
Confidence 99999999996
No 32
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=98.92 E-value=1.3e-08 Score=99.88 Aligned_cols=133 Identities=15% Similarity=0.132 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHH------cCCcccccCCCchhHHHHHHHhhccC------CCeeecCCCchHH------HHhcCCCH
Q 029082 46 VTLQTMDTIFYEAQR------QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGFSM 107 (199)
Q Consensus 46 ~~~R~~d~~~~~l~r------qG~ig~~~~~~GqEa~~vg~~~al~~------~D~~~~~yR~~~~------~l~rG~~~ 107 (199)
..+|..-..|..... .|+++...|+. |...|+....|+. +|++++ .+|+. +...|.-.
T Consensus 80 ~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls 155 (885)
T TIGR00759 80 SIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLT 155 (885)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCC
Confidence 446666666655444 56777777777 7777877777864 587655 57773 44568544
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccC--CCCCccccccccccccchhhhHHHHHHHh-------CCCCCEEEEEeCCCccC
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYG--SNKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTS 178 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~--~~~~~~~~~~~~vG~q~~~A~G~A~A~k~-------~g~~~vvv~~~GDGats 178 (199)
.+-|.. |.+... |.+.+.|.. .....+-.+++++|.++++|+|.|++.|+ ++.+.-|+|++|||.+.
T Consensus 156 ~e~L~~-FRq~~~---g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEld 231 (885)
T TIGR00759 156 EEQLDN-FRQEVQ---GDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMD 231 (885)
T ss_pred HHHHHH-hcCCCC---CCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhc
Confidence 555555 455322 233333432 21224677899999999999999999997 67788899999999999
Q ss_pred hhHHHHHH
Q 029082 179 EEVSFLFL 186 (199)
Q Consensus 179 eG~f~Eal 186 (199)
||+.|||+
T Consensus 232 EG~swEA~ 239 (885)
T TIGR00759 232 EPESKGAI 239 (885)
T ss_pred cHHHHHHH
Confidence 99999996
No 33
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=1.4e-08 Score=95.79 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHH------HHhcCCCH
Q 029082 43 NDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGFSM 107 (199)
Q Consensus 43 r~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~------~l~rG~~~ 107 (199)
-.|..+|..+.++...-+.|+.++..+.. |...|.....|+ + .|.++.+ .+|+. ...-|.+-
T Consensus 12 ~~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~ 88 (632)
T KOG0523|consen 12 DAVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDR 88 (632)
T ss_pred HHhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCc
Confidence 35778999999999999999988777766 667666666563 2 3777766 56764 22346544
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCC-CCEEEEEeCCCccChhHHHHHH
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEEVSFLFL 186 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~-~~vvv~~~GDGatseG~f~Eal 186 (199)
.+-|.++--. +..-+.|.-....++.-.++++|.+++.|+|+|++.|+.++ ++-|+|++|||..+||..|||+
T Consensus 89 ~edl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~ 162 (632)
T KOG0523|consen 89 EEDLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAM 162 (632)
T ss_pred HHHHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHH
Confidence 4444442211 22234455444456666789999999999999999999998 8899999999999999999998
Q ss_pred H
Q 029082 187 I 187 (199)
Q Consensus 187 ~ 187 (199)
.
T Consensus 163 s 163 (632)
T KOG0523|consen 163 S 163 (632)
T ss_pred h
Confidence 5
No 34
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.88 E-value=1.3e-08 Score=98.08 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=98.8
Q ss_pred eeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecC
Q 029082 15 YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ 93 (199)
Q Consensus 15 ~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~ 93 (199)
+++|+ ++-.+.+..+++.++|.++ ...+|.+-..+.... .|++|.-.++. |...+ +...++ |.|.++-+
T Consensus 6 ~~~l~---~i~~p~dl~~l~~~~l~~~---a~~iR~~ii~~~~~~-~GH~g~~ls~v--el~~a-L~~~~~~prDr~i~s 75 (641)
T PRK12571 6 TPLLD---RIKGPADLRALSDAELEQL---ADELRAEVISAVSET-GGHLGSSLGVV--ELTVA-LHAVFNTPKDKLVWD 75 (641)
T ss_pred CChhh---hcCCHHHHHhCCHHHHHHH---HHHHHHHHHHHHHHh-CCCcCCCchHH--HHHHH-HHHhcCCCCCcEEEE
Confidence 44555 3333334556676665544 555666666665543 58887666666 65543 445554 77988777
Q ss_pred CCchHH---HHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCC-ccccccccccccchhhhHHHHHHHhCCCCCEEE
Q 029082 94 YREPGV---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (199)
Q Consensus 94 yR~~~~---~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~-~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv 169 (199)
.+|+. .+..|. .+-|.. +.+..+ .+.|....+. .-....++-+++++.|+|+|+|.|+++.++.++
T Consensus 76 -~GH~~Y~~~~l~g~--~~~l~~-~r~~~~------l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~ 145 (641)
T PRK12571 76 -VGHQCYPHKILTGR--RDRFRT-LRQKGG------LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVV 145 (641)
T ss_pred -CchHHHHHHHHhCC--HHHHhh-hhhCCC------cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEE
Confidence 56654 333453 233333 233211 2334322221 111123333667899999999999999999999
Q ss_pred EEeCCCccChhHHHHHHH----hccchhh
Q 029082 170 TYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 170 ~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
|++|||+.++|.+||+++ +++|++-
T Consensus 146 ~v~GDG~~~eG~~~Eal~~a~~~~~~li~ 174 (641)
T PRK12571 146 AVIGDGSLTAGMAYEALNNAGAADRRLIV 174 (641)
T ss_pred EEEeCchhhcchHHHHHHHHHHhCCCEEE
Confidence 999999999999999984 7788764
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.88 E-value=2.4e-08 Score=98.73 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHH------cCCcccccCCCchhHHHHHHHhhccC------CCeeecCCCchHH------HHhcCCC
Q 029082 45 MVTLQTMDTIFYEAQR------QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGFS 106 (199)
Q Consensus 45 M~~~R~~d~~~~~l~r------qG~ig~~~~~~GqEa~~vg~~~al~~------~D~~~~~yR~~~~------~l~rG~~ 106 (199)
...+|..-.++..... .|+++...++. |...|.....|+. +|++++. +|+. +...|.-
T Consensus 79 a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~l~l~G~l 154 (889)
T TIGR03186 79 AAILRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYARAFLEGFL 154 (889)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHHHHHcCCC
Confidence 4446666666665555 37777777777 7778887777874 5876665 5662 3356854
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCC-------CCCEEEEEeCCCccCh
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSE 179 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g-------~~~vvv~~~GDGatse 179 (199)
..+-|.+ |.+..+ ..|-+.+.|.......+-..++++|.+++.|+|+|++.|+.. .+.-|+|++|||.++|
T Consensus 155 ~~e~L~~-fRq~~~-~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~E 232 (889)
T TIGR03186 155 SDAQLAH-YRQEIA-GPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDE 232 (889)
T ss_pred CHHHHHH-hcCCCC-CCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhcc
Confidence 4444555 444321 123333345433222466789999999999999999998433 3678999999999999
Q ss_pred hHHHHHH
Q 029082 180 EVSFLFL 186 (199)
Q Consensus 180 G~f~Eal 186 (199)
|..|||+
T Consensus 233 G~~wEA~ 239 (889)
T TIGR03186 233 PESIGAL 239 (889)
T ss_pred HHHHHHH
Confidence 9999996
No 36
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.74 E-value=9.7e-08 Score=94.65 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHc------CCcccccCCCchhHHHHHHHhhcc------CCCeeecCCCchHH------HHhcCC
Q 029082 44 DMVTLQTMDTIFYEAQRQ------GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRGF 105 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rq------G~ig~~~~~~GqEa~~vg~~~al~------~~D~~~~~yR~~~~------~l~rG~ 105 (199)
....+|..-..|...... |+++.+.++. +...|+....|+ .+|+++. .+|+. +...|.
T Consensus 92 i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~ 167 (896)
T PRK13012 92 LAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGR 167 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCC
Confidence 344566666666665556 7777777777 777888877787 5697665 47773 445674
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcccCCC--CCccccccccccccchhhhHHHHHHHh-------CCCCCEEEEEeCCCc
Q 029082 106 SMQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGG 176 (199)
Q Consensus 106 ~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~~~vG~q~~~A~G~A~A~k~-------~g~~~vvv~~~GDGa 176 (199)
-.++-|.. |-+..+ |.+.+.|..-+ ...+-.+++++|.+++.|+|.|++.|| +..+.-|+|++|||.
T Consensus 168 l~~e~L~~-fR~~~~---~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGE 243 (896)
T PRK13012 168 LSEEQLDH-FRQEIG---GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGE 243 (896)
T ss_pred CCHHHHHH-hcCCCC---CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhh
Confidence 33344554 455432 33344443211 123556889999999999999999993 567788999999999
Q ss_pred cChhHHHHHHH
Q 029082 177 TSEEVSFLFLI 187 (199)
Q Consensus 177 tseG~f~Eal~ 187 (199)
+.||+.|||+.
T Consensus 244 l~Eg~~~eA~~ 254 (896)
T PRK13012 244 MDEPESIAALS 254 (896)
T ss_pred hccHHHHHHHH
Confidence 99999999963
No 37
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.58 E-value=6.3e-07 Score=88.85 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcccccCCCchhHHHHHHHhhccC------CCeeecCCCchHH---
Q 029082 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ------GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV--- 99 (199)
Q Consensus 35 ~e~l~~lyr~M~~~R~~d~~~~~l~rq------G~ig~~~~~~GqEa~~vg~~~al~~------~D~~~~~yR~~~~--- 99 (199)
+..+.+-.+ ..+|..-..+...... |+++.+.++. +...|+....|+. +|+++. .+|+.
T Consensus 77 ~~~~e~~i~--~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~l 150 (891)
T PRK09405 77 DLELERRIR--SYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGI 150 (891)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHH
Confidence 344444333 4455555555554444 6666666655 6667777777864 687774 47773
Q ss_pred ---HHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCC--CCccccccccccccchhhhHHHHHHHh-------CCCCCE
Q 029082 100 ---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDAC 167 (199)
Q Consensus 100 ---~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~~~vG~q~~~A~G~A~A~k~-------~g~~~v 167 (199)
+...|.-.++-|.. |-+. ..|.+.+.|..-+ .-.+...++++|.+.+.|+|.|++.|| ++.+.-
T Consensus 151 YA~~~l~G~l~~e~L~~-fR~~---~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~r 226 (891)
T PRK09405 151 YARAFLEGRLTEEQLDN-FRQE---VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQK 226 (891)
T ss_pred HHHHHHcCCCCHHHHHH-hcCC---CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCce
Confidence 44567544444554 4444 2244445543221 122455678999999999999999994 566788
Q ss_pred EEEEeCCCccChhHHHHHHH
Q 029082 168 AVTYFGDGGTSEEVSFLFLI 187 (199)
Q Consensus 168 vv~~~GDGatseG~f~Eal~ 187 (199)
++|++|||.+.||+.|||+.
T Consensus 227 v~~~~GDGEldEg~~~EA~~ 246 (891)
T PRK09405 227 VWAFLGDGEMDEPESLGAIS 246 (891)
T ss_pred EEEEEcchhhccHHHHHHHH
Confidence 99999999999999999963
No 38
>PRK05261 putative phosphoketolase; Provisional
Probab=98.14 E-value=8.6e-06 Score=79.98 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=80.4
Q ss_pred ccccCCCchhHHHHHHHhhccCC--CeeecCCCchHHH------HhcC--------CCH-----HHHHHHhhcCCCCCCC
Q 029082 65 SFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVL------LWRG--------FSM-----QEFANQCFGNKADYGK 123 (199)
Q Consensus 65 g~~~~~~GqEa~~vg~~~al~~~--D~~~~~yR~~~~~------l~rG--------~~~-----~~~l~e~~g~~~g~~~ 123 (199)
|=|-.+.|+-.+-+.+....++. |.++-.=-+|+.. ..-| ++. .+++.++ +..
T Consensus 50 GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~p----- 123 (785)
T PRK05261 50 GHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SFP----- 123 (785)
T ss_pred CCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cCC-----
Confidence 55556667766655544444443 6333333366621 1235 333 3355553 322
Q ss_pred CCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHH---HHHHHhc--------cch
Q 029082 124 GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVS---FLFLIHQ--------LVI 192 (199)
Q Consensus 124 Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f---~Eal~~~--------lP~ 192 (199)
| +.+.|......++...+|++|.++++|+|+|+ ++.+.+++|++|||+.++|.+ |++.++. |||
T Consensus 124 g-g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al----~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPI 198 (785)
T PRK05261 124 G-GIPSHAAPETPGSIHEGGELGYSLSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPI 198 (785)
T ss_pred C-CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHH----cCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEE
Confidence 2 46778876778999999999999999999995 456889999999999999995 8876655 787
Q ss_pred hh
Q 029082 193 RE 194 (199)
Q Consensus 193 ~~ 194 (199)
+.
T Consensus 199 ld 200 (785)
T PRK05261 199 LH 200 (785)
T ss_pred EE
Confidence 64
No 39
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=6.5e-05 Score=71.98 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHHHH------hcC--CC
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGVLL------WRG--FS 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~~l------~rG--~~ 106 (199)
..-.+|.+-..+.+....|+-|.-...+ +.+.|.....|+ | .|.++.+ -+|+.+| ..| ++
T Consensus 9 ~~naiR~Ls~davqkAnSGHPG~pmG~A--~ia~~L~~~~l~~nP~nP~W~nRDRFVLS-aGHgSmllYsllhl~Gy~ls 85 (663)
T COG0021 9 LANAIRFLSMDAVQKANSGHPGAPMGAA--DIAYVLWTRFLKHNPDNPKWINRDRFVLS-AGHGSMLLYSLLHLTGYDLS 85 (663)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCccHH--HHHHHHHHHHhcCCCCCCCCCCCccEEec-CCchhHHHHHHHHHccCCCC
Confidence 3567888888888888888866443333 344444444453 3 3777777 4677433 235 45
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCccc-CCCCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHY-GSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~-~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDG 175 (199)
++++.. |=. -|.--|.|. .....++..+++|+|.+++.|||+|+|.|+-.. |.-++|++|||
T Consensus 86 ~edLk~--FRQ-----~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDG 158 (663)
T COG0021 86 LEDLKN--FRQ-----LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDG 158 (663)
T ss_pred HHHHHh--hcc-----CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCc
Confidence 555432 111 123335565 244568899999999999999999999986442 34799999999
Q ss_pred ccChhHHHHHH
Q 029082 176 GTSEEVSFLFL 186 (199)
Q Consensus 176 atseG~f~Eal 186 (199)
-..||--|||.
T Consensus 159 clmEGvs~EA~ 169 (663)
T COG0021 159 CLMEGVSHEAA 169 (663)
T ss_pred hHhcccHHHHH
Confidence 99999999994
No 40
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=97.91 E-value=7.9e-06 Score=71.00 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecC--CCchHHHHhcCCC
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFS 106 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~rG~~ 106 (199)
..+++.++|.++-+. +|. .+.+...+ .-|-..++.|-==..|++-..++ |.|.++=- |-.-++-+.
T Consensus 10 lk~ls~~eL~~La~e---iR~---~ii~~vs~-~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiL---- 78 (270)
T PF13292_consen 10 LKKLSIEELEQLAQE---IRE---FIIETVSK-TGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKIL---- 78 (270)
T ss_dssp HTTS-GGGHHHHHHH---HHH---HHHHHCTC-CCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHC----
T ss_pred HHcCCHHHHHHHHHH---HHH---HHHHHHhh-cCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhc----
Confidence 345666666655433 222 22222221 01333444444334567777775 78876643 333333332
Q ss_pred HHHHHHHhhcCCCCCC--C-CCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHH
Q 029082 107 MQEFANQCFGNKADYG--K-GRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVS 182 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~--~-Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f 182 (199)
-||..... + -.+.+.... +....-....+.-++.++.|.|+|.|.++++++.-+|+.+||||.+-|..
T Consensus 79 --------TGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 79 --------TGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp --------TTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred --------cCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 34444321 1 111121111 11122234568889999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 029082 183 FLFLIH 188 (199)
Q Consensus 183 ~Eal~~ 188 (199)
+||||+
T Consensus 151 ~EALN~ 156 (270)
T PF13292_consen 151 FEALNN 156 (270)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
No 41
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.84 E-value=0.00014 Score=70.85 Aligned_cols=110 Identities=8% Similarity=-0.015 Sum_probs=70.5
Q ss_pred cCCCchhHHHHHHHhhcc-CCCeeecC--CCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCC--CCcccccc
Q 029082 68 LTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVS 142 (199)
Q Consensus 68 ~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~ 142 (199)
.++.|-==.-|++-..++ |.|.++=- |-.-.|=+.-|-- ++ |. . |..+ |-.+ |.++ ...-....
T Consensus 120 ~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~-~~-f~--~-Rq~~---GlsG---f~~r~ES~~D~f~~ 188 (701)
T PLN02225 120 NPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRW-SA-IP--S-RQKN---GISG---VTSQLESEYDSFGT 188 (701)
T ss_pred CCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCCh-hh-cC--c-cccC---CcCC---CCCCCCCCCCCCCC
Confidence 345554334477777886 78876543 4444444433321 11 11 0 1111 1111 1111 12233466
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHHh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLIH 188 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~~ 188 (199)
++-++.++.|.|+|.|..++++++-+|+.+||||.+-|..|||||+
T Consensus 189 GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~ 234 (701)
T PLN02225 189 GHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSN 234 (701)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhh
Confidence 8889999999999999999999999999999999999999999984
No 42
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=97.77 E-value=0.0003 Score=67.17 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcccccCCCchhHHHHHHHhhcc-CCCeeecC--CCchHHHHhc
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQ--GRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWR 103 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rq--G~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~r 103 (199)
+...+|.++|.++-+.+ | +.+++...+ |+++ |+.|-=-.-|++-..++ |.|.+.=- |..-.|-+.-
T Consensus 13 dLk~ls~~eL~~La~Ei---R---~~li~~vS~~GGHlg---snLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLT 83 (627)
T COG1154 13 DLKKLSIEELPQLADEI---R---EFLLEVVSATGGHLG---SNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILT 83 (627)
T ss_pred HHhhCCHHHHHHHHHHH---H---HHHHHHhccCCCccC---CCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhc
Confidence 34567777777654332 2 233332222 3433 44443233467777775 77765532 4443343433
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCCcccCCC--CCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhH
Q 029082 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEV 181 (199)
Q Consensus 104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~ 181 (199)
|-- +-|..+- +.+ |- +. |.++ +..-+...++-++.++.|+|+|.|..++|+++-+++.+||||.+-|.
T Consensus 84 GR~--e~f~tlR-q~~----Gl--sG-f~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 84 GRR--EQFDTLR-QKD----GL--SG-FPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred Cch--hhcchhh-hcC----CC--CC-CCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 321 1222110 111 11 11 1111 11234567888999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 029082 182 SFLFLIHQ 189 (199)
Q Consensus 182 f~Eal~~~ 189 (199)
.|||||+.
T Consensus 154 A~EALN~a 161 (627)
T COG1154 154 AFEALNNA 161 (627)
T ss_pred HHHHHhhh
Confidence 99999864
No 43
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=97.69 E-value=2.5e-05 Score=63.80 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=42.1
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhcc-chhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQL-VIRE 194 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~l-P~~~ 194 (199)
.+++|..+|.|+|+++|.+ +.|+|++|||+. +.++++++..+++ |++.
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~~~el~ta~~~~~~~l~v 91 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNLGALATIAAEKPKNLII 91 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhCHHHHHHHHHcCCCCEEE
Confidence 6889999999999999864 579999999999 8999999999985 5643
No 44
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=97.54 E-value=6.3e-05 Score=59.33 Aligned_cols=55 Identities=27% Similarity=0.184 Sum_probs=42.2
Q ss_pred ccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 137 ~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+....+++|.++|.|+|++++.+ ++.++|++|||+... .+++.+..+++|++-+
T Consensus 40 ~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~~~~~l~ta~~~~~~~~~i 96 (168)
T cd00568 40 LTSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMMTGQELATAVRYGLPVIVV 96 (168)
T ss_pred EeCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhccHHHHHHHHHcCCCcEEE
Confidence 345577899999999999999865 678999999999986 2222233588998754
No 45
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=97.47 E-value=0.00012 Score=58.95 Aligned_cols=49 Identities=29% Similarity=0.274 Sum_probs=40.2
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
+++|.++|.|+|+++|.+ ++.++|++|||+...+ +++-+..+++|++-+
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~~i 99 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTIQALWTAARYGLPVTVV 99 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccHHHHHHHHHhCCCeEEE
Confidence 899999999999999853 6789999999997755 555556789998754
No 46
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=97.25 E-value=0.00047 Score=55.32 Aligned_cols=51 Identities=25% Similarity=0.099 Sum_probs=39.3
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++.++|++|||+... .+++.+..++||++.+
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~~~el~ta~~~~lpv~iv 98 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFSGMELETAVRYNLPIVVV 98 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCCHHHHHHHHHcCCCEEEE
Confidence 4577888888888887774 4678999999999885 4555556799997654
No 47
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=97.19 E-value=0.00027 Score=57.22 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=39.2
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+++|. .++.++|++|||+... .+++.+..+++|++-+
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~~~el~t~~~~~lp~~~i 101 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAVKYNLPVIVV 101 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEE
Confidence 4477888888888887763 5678999999999984 4455556799998754
No 48
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=96.95 E-value=0.00048 Score=55.09 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=41.7
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHh-ccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIH-QLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~-~lP~~~~ 195 (199)
.+.+|..+|.|.|+++|.+ +-++|+.|||+. +-++++.+..+ ++|++.+
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~~el~t~~~~~~~~i~~v 92 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNPGVLLTAGEFTPLNLILV 92 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcccHHHHHHHhcCCCEEEE
Confidence 7889999999999999852 568999999998 88888888777 5998765
No 49
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=96.92 E-value=0.00091 Score=54.46 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=39.8
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++.++|++|||+.. -.+++.+..++||++-+
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~~~eL~ta~~~~lpi~iv 100 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMNIQELATAAQYNLPVKIV 100 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhccHHHHHHHHHhCCCeEEE
Confidence 3467899888888888874 456799999999954 46677777899998654
No 50
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=96.74 E-value=0.0019 Score=52.31 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=40.1
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh---hHHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---EVSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse---G~f~Eal~~~lP~~~~ 195 (199)
...+.+|..+|.|+|+++|.+ ++-|+|+.|||+... .++..+..++||++.+
T Consensus 48 ~~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vv 102 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSGILGLINAVYNKANITVV 102 (178)
T ss_pred cccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEE
Confidence 356789999999999988864 556899999999852 4566666789998754
No 51
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.56 E-value=0.0025 Score=59.90 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=41.2
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
+.++.+|.++|.|+|+++|. .++.++|++|||+...+ +++-+..++||++.+
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~v 457 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFV 457 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEE
Confidence 34688999999999999984 35689999999999865 555556689998653
No 52
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=96.53 E-value=0.0018 Score=52.85 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=39.1
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH---HHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF---LIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea---l~~~lP~~~~ 195 (199)
+..+.+|..+|.|+|+++|. .++.++|++|||+..- .++|. ..+++|++.+
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~el~ta~~~~~p~~iv 100 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQELSTMIRYGLNPIIF 100 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHHHHHHHHhCCCCEEE
Confidence 35578999999999998875 3568999999999944 55555 4578998754
No 53
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.53 E-value=0.0028 Score=60.33 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=40.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+++|. .++.|+|++|||+. +-.+++.+..++||++.+
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~v 472 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMNIQELQTIAENNIPVKVF 472 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhhccHHHHHHHHHhCCCeEEE
Confidence 3488999999999998873 46779999999998 445666667899998754
No 54
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=96.51 E-value=0.0022 Score=52.91 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=39.8
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++.|+|+.|||+..- .+.+.+..++||++-+
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~v 103 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMSMMEIMTAVRHKLPVTAV 103 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 3467899888888888773 4667999999999765 5666667799998754
No 55
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=96.48 E-value=0.003 Score=52.10 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=38.6
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCc---cChhHHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGG---TSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGa---tseG~f~Eal~~~lP~~~~ 195 (199)
+.+|..+|.|+|+++| ..++-|+++.|||+ ++-.+++.+..+++|++.+
T Consensus 51 g~mG~glpaAiGa~la----~p~r~Vv~i~GDGs~f~m~~~eL~ta~~~~lpv~ii 102 (193)
T cd03375 51 TLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIGGNHFIHAARRNIDITVI 102 (193)
T ss_pred hhhccHHHHHHHHHHh----CCCCeEEEEeccchHhhccHHHHHHHHHhCCCeEEE
Confidence 6677777777777776 45678999999998 4446888888999998765
No 56
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=96.47 E-value=0.0024 Score=51.89 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=41.2
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++-|+|+.|||+. +-.+++.+.-++||++.+
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~~eL~ta~~~~l~vi~v 98 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNSQELETAVRLKIPLVVL 98 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHHHHHHHHHHHCCCeEEE
Confidence 5578999999999999883 45679999999998 556677777899998765
No 57
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=96.40 E-value=0.003 Score=52.20 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=41.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|||+.|||+. +-.+++.+..++||++-+
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpviiv 107 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFMIEELAVGAQHRIPYIHV 107 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhccHHHHHHHHHhCCCeEEE
Confidence 3577888888888888874 45679999999996 556888888999998754
No 58
>PRK06163 hypothetical protein; Provisional
Probab=96.19 E-value=0.0039 Score=52.10 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=40.1
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHh-ccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIH-QLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~-~lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. .++-|+|+.|||+. +-++++.+... ++|++.+
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lpi~iv 108 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQLGALGTIAALAPKNLTII 108 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 577999999999998884 45568999999986 77888888754 6888754
No 59
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=96.19 E-value=0.0042 Score=51.11 Aligned_cols=49 Identities=18% Similarity=0.025 Sum_probs=38.4
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhcc-chhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQL-VIRE 194 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~l-P~~~ 194 (199)
++.+|..+|.|+|+++|. .++-|+|+.|||+. +-++++.+..+++ |++.
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~i~i 98 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMHMGGLATIGGLAPANLIH 98 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhhccHHHHHHHcCCCCcEE
Confidence 388999999999998885 34568999999997 6677777777876 4543
No 60
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.09 E-value=0.0043 Score=50.79 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=38.2
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhc-cchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQ-LVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~-lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. ++-|+|+.|||+... ++++.+..++ +|++.+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~v 92 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNLGVLPTIAAESPKNLILV 92 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEE
Confidence 678899899999999884 456999999999863 4666666688 488654
No 61
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.98 E-value=0.004 Score=48.88 Aligned_cols=52 Identities=27% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
...+.+|..+|.|+|+++| ..++-++|+.|||+..- .++..+..+++|++.+
T Consensus 25 ~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~v 78 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIV 78 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEE
T ss_pred CCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccceEEEE
Confidence 3677899988888888886 45788999999998654 5666667799998764
No 62
>PRK07524 hypothetical protein; Provisional
Probab=95.95 E-value=0.0062 Score=57.32 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=40.4
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
.+.+|.++|.|+|+++|. .++.++|++|||+.. -.+++.+..++||++.+
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~v 457 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFTLPELASAVEADLPLIVL 457 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence 478999999999999884 567899999999954 45577777899998754
No 63
>PRK07064 hypothetical protein; Provisional
Probab=95.83 E-value=0.0093 Score=56.11 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=42.1
Q ss_pred cccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 138 ~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
+.+..+.+|..+|.|+|+++|. .++-++|++|||+..- .+.+.+..++||++.+
T Consensus 400 ~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 455 (544)
T PRK07064 400 VHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLNLGELATAVQENANMVIV 455 (544)
T ss_pred eccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEE
Confidence 3344467999999999988883 4567999999999754 4778888899998765
No 64
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=95.81 E-value=0.0047 Score=52.71 Aligned_cols=55 Identities=22% Similarity=0.122 Sum_probs=42.0
Q ss_pred ccccccccchhhhHHHHHHH-hCCCCCEEEEEeCCCcc---ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGT---SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k-~~g~~~vvv~~~GDGat---seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|.- ....++.|+|+.|||+. +-++++.++.+++|++-+
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~iv 120 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVI 120 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEE
Confidence 34888999999988887611 11346789999999974 788888888899998644
No 65
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=95.81 E-value=0.012 Score=48.86 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=38.8
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++| ..++-++|+.|||+.. -++++.+..++||++-+
T Consensus 46 ~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 98 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLHSEIVTAVQEGLKIIIV 98 (205)
T ss_pred CcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccHHHHHHHHHcCCCCEEE
Confidence 446678777777777766 4566799999999987 45777778899998654
No 66
>PRK07586 hypothetical protein; Validated
Probab=95.79 E-value=0.0095 Score=55.73 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=40.0
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|-|+|+++|. .++-|+|+.|||+. +-.+++.+..++||++-+
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~iv 435 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYTIQALWTQARENLDVTTV 435 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEE
Confidence 477888888888888874 46679999999994 567888888999997644
No 67
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=95.65 E-value=0.014 Score=51.39 Aligned_cols=50 Identities=22% Similarity=0.208 Sum_probs=39.2
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCc---cChhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG---TSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGa---tseG~f~Eal~~~lP~~~~ 195 (199)
.+..|-.+|.|+|+++| ..+.-|+|+.|||+ .+-.++..|...++|++-+
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vI 120 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYI 120 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEE
Confidence 35678888888888877 45678999999995 4556788888899998755
No 68
>PRK12474 hypothetical protein; Provisional
Probab=95.54 E-value=0.017 Score=54.24 Aligned_cols=51 Identities=29% Similarity=0.383 Sum_probs=41.4
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|+|+.|||+. +-.+++.+..++||++-+
T Consensus 387 ~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~ii 439 (518)
T PRK12474 387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTMQALWTMARENLDVTVV 439 (518)
T ss_pred CCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEE
Confidence 3478888888888888884 45668999999985 557888889999998765
No 69
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=95.53 E-value=0.011 Score=56.03 Aligned_cols=51 Identities=27% Similarity=0.265 Sum_probs=40.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+++|. .++.|+|+.|||+..-. +++.+..++||++.+
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~v 469 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMNIQEMATAAENQLDVKII 469 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 3478999999999999885 35679999999997653 566666799998754
No 70
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.53 E-value=0.015 Score=55.02 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=38.7
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++| ..++.|+|++|||+. +-.+++.+..++||++.+
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~v 465 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVI 465 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 346677766666666655 556789999999994 467888888999998765
No 71
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=95.53 E-value=0.012 Score=56.07 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=41.6
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|-.+|.|+|+++|. .++.++|+.|||+.. -++++.+..++||++-+
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~v 458 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVV 458 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEE
Confidence 3477888899999988874 466799999999884 47888888999998754
No 72
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=95.48 E-value=0.0098 Score=50.74 Aligned_cols=53 Identities=26% Similarity=0.223 Sum_probs=38.1
Q ss_pred ccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc---ChhHHHHHHHhccchhhh
Q 029082 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT---SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 139 ~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat---seG~f~Eal~~~lP~~~~ 195 (199)
+...+++|..+|.|+|++. ...++-|||+.|||+. +-.+++-+..+++|++-+
T Consensus 58 ~~~~gsmG~GlpaAiGa~~----a~p~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~v 113 (235)
T cd03376 58 FENAAAVASGIEAALKALG----RGKDITVVAFAGDGGTADIGFQALSGAAERGHDILYI 113 (235)
T ss_pred hcCHHHHHHHHHHHHHHhc----cCCCCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEE
Confidence 3344577777777776643 3456679999999993 456777788899998754
No 73
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=95.47 E-value=0.016 Score=55.13 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=41.5
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|+|++|||+. +-.+++.+..++||++.+
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iv 458 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIV 458 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEE
Confidence 4467888888888888774 45678999999987 778899999999998765
No 74
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.41 E-value=0.012 Score=55.56 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=40.3
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|.|+|+++|. .++.|+|++|||+..- .+.+.+..++||++-+
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~v 462 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMNLQELSTAVQYDIPVKIL 462 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 3478999999999988873 4567999999999873 4677777899998754
No 75
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=95.39 E-value=0.0066 Score=49.08 Aligned_cols=48 Identities=27% Similarity=0.166 Sum_probs=38.9
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
+.+|..+|.|.|+++|. ++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~iv 100 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIV 100 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHhHHHHHhccccCCCeEEE
Confidence 66889999999999984 455889999999764 6777777789998754
No 76
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=95.36 E-value=0.021 Score=50.71 Aligned_cols=103 Identities=19% Similarity=0.131 Sum_probs=64.9
Q ss_pred HHHcCCc-ccccCCCchhHHHHHHHhhc-----cCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCccc
Q 029082 58 AQRQGRI-SFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131 (199)
Q Consensus 58 l~rqG~i-g~~~~~~GqEa~~vg~~~al-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~ 131 (199)
..|.-++ ..|.++=|+=.+.-++..++ .|+|.++.+ +-|..- + ...++
T Consensus 10 ~~~~~~~~~~~CpGCg~~~i~~~i~~al~~l~l~p~d~vivs--diG~s~-~-------~~~yl---------------- 63 (301)
T PRK05778 10 YLRYDGLPTTWCPGCGNFGILNAIIQALAELGLDPDKVVVVS--GIGCSS-K-------IPGYF---------------- 63 (301)
T ss_pred hhccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEe--CCcHhh-h-------hhhhc----------------
Confidence 3444455 47888888877755555555 467876666 333221 1 00000
Q ss_pred CCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc---ChhHHHHHHHhccchhhh
Q 029082 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT---SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 132 ~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat---seG~f~Eal~~~lP~~~~ 195 (199)
+.....+..|-.+|.|+|+++| ..+.-|||+.|||+. +-+++.-|...++|++.+
T Consensus 64 -----~~~~~~g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vI 121 (301)
T PRK05778 64 -----LSHGLHTLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVI 121 (301)
T ss_pred -----ccCccchhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEE
Confidence 0111225567778888888777 456679999999974 446888889999998765
No 77
>PRK06154 hypothetical protein; Provisional
Probab=95.33 E-value=0.013 Score=55.78 Aligned_cols=51 Identities=22% Similarity=0.189 Sum_probs=41.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|-.+|.|+|+++|. .++-|+|+.|||+..- .+++.+.-++||++.+
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~v 481 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMTGMDFETAVRERIPILTI 481 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 3467888888888888874 4677999999999754 4888889999999765
No 78
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.27 E-value=0.018 Score=54.60 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=40.2
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. .++.|+|+.|||+.. -.+++.+..++||++.+
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~v 464 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMNIQELMTAVEYKIPVINI 464 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhcccHHHHHHHHHhCCCeEEE
Confidence 378999899999988874 345689999999987 45677778899998754
No 79
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=95.18 E-value=0.017 Score=54.93 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=37.5
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|.++|.|+|+++| ..++.|+|++|||+..- .+++.+..++||++.+
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~~v 487 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAHVWAELETARRMGVPVTIV 487 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHhHHHHHHHHHHhCCCeEEE
Confidence 36788888888888776 34667999999999752 4455556799998654
No 80
>PRK08266 hypothetical protein; Provisional
Probab=95.14 E-value=0.017 Score=54.42 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=39.5
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|++++ ..++-++|+.|||+...+ +++.+..++||++-+
T Consensus 400 ~~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~iv 452 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTV 452 (542)
T ss_pred CCcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 347788888888887766 456679999999998776 566667799998754
No 81
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.14 E-value=0.017 Score=54.87 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=40.2
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++.|+|+.|||+..-. +.+.+..++||++-+
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~v 471 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIV 471 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 4578999999999999884 35578999999998664 456666799998754
No 82
>PRK05858 hypothetical protein; Provisional
Probab=95.11 E-value=0.021 Score=53.87 Aligned_cols=51 Identities=22% Similarity=0.105 Sum_probs=41.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++-++|+.|||+. +-.+++.+..++||++-+
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~iv 457 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSV 457 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEE
Confidence 3467888888888888874 45679999999997 456888888999998754
No 83
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=95.02 E-value=0.019 Score=54.88 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=40.7
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
.+++|-.+|.|+|+++|. .++-||++.|||+. +-.+++.+..++||++.+
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~i 468 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFMIEELAVGAQHNIPYIHV 468 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 477888888888888874 45669999999996 456888889999998765
No 84
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.99 E-value=0.022 Score=54.46 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=41.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|+|+.|||+. +-.+++.+..++||++.+
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~~v 469 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFLIEELAVGAQFNLPYIHV 469 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcCHHHHHHHHHhCCCeEEE
Confidence 4578999899898888873 45679999999996 667888888999998765
No 85
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=94.95 E-value=0.033 Score=49.16 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=36.9
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCc---cChhHHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGG---TSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGa---tseG~f~Eal~~~lP~~~~ 195 (199)
+..|-.+|.|+|+++| ..+.-|||+.|||+ .+-+++.-|...++||+-|
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vI 104 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVI 104 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEE
Confidence 3457767777777666 55678999999998 3456788888899998765
No 86
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.90 E-value=0.022 Score=54.24 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=40.4
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|-|+|+++|. .++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~eL~Tavr~~lpvi~v 480 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNEIMTAVRHDIPVTAV 480 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 368888888888888873 4566899999999765 7888888999998765
No 87
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.90 E-value=0.026 Score=53.60 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=41.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. ++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~v 473 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFSGMEVETICRYNLPVTVV 473 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCccccccHHHHHHHHHcCCCEEEE
Confidence 3478999999999999982 455999999999754 4788888999998765
No 88
>PLN02573 pyruvate decarboxylase
Probab=94.83 E-value=0.019 Score=54.87 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=42.3
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|||+.|||+..-. +++.+..++||++.+
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~v 478 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIF 478 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEE
Confidence 3578999899999988885 35679999999997665 899999999998865
No 89
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.82 E-value=0.023 Score=54.04 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=41.2
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~iv 473 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNIQELSTCLQYGLPVKII 473 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 4478899899999988874 3556999999998654 5888889999998754
No 90
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.81 E-value=0.031 Score=49.17 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=64.8
Q ss_pred cCCc-ccccCCCchhHHHHHHHhhc-----cCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCC
Q 029082 61 QGRI-SFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN 134 (199)
Q Consensus 61 qG~i-g~~~~~~GqEa~~vg~~~al-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~ 134 (199)
.-++ ..|.++=|+=.+--++..|+ .|+|.++.+ |-|.. .+ +..++ +.
T Consensus 3 ~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~-~~-------~~~~~-~~---------------- 55 (280)
T PRK11869 3 PEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQA-AK-------MPHYI-NV---------------- 55 (280)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHh-hh-------HHHHc-cC----------------
Confidence 3445 47888888888876776666 356776665 33321 11 11111 10
Q ss_pred CCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC---hhHHHHHHHhccchhhh
Q 029082 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS---EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 135 ~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats---eG~f~Eal~~~lP~~~~ 195 (199)
....+..|-.+|.|+|+.+| +.+.-|||+.|||++. -+++..|.-.++||+-+
T Consensus 56 ----~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~I 111 (280)
T PRK11869 56 ----NGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVL 111 (280)
T ss_pred ----CCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEE
Confidence 01223377778888888666 4567799999999986 37888888999998765
No 91
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.76 E-value=0.03 Score=53.01 Aligned_cols=50 Identities=14% Similarity=-0.004 Sum_probs=41.0
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. ++-|+|+.|||+..- .+.+.+..++||++.+
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~v 466 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFSGMEVETICRYNLPVCVV 466 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhcccHHHHHHHHHcCCCEEEE
Confidence 3478999999999999972 456999999999764 4788888999998754
No 92
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.75 E-value=0.016 Score=52.56 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=38.6
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhcc-chh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQL-VIR 193 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~l-P~~ 193 (199)
.+++|..+|.|+|+|+|.+ ++-|+|+.|||+. +.|++.-+..+++ |++
T Consensus 220 ~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli 270 (361)
T TIGR03297 220 VGSMGHASQIALGLALARP----DQRVVCLDGDGAALMHMGGLATIGTQGPANLI 270 (361)
T ss_pred echhhhHHHHHHHHHHHCC----CCCEEEEEChHHHHHHHHHHHHHHHhCCCCeE
Confidence 5889999999999998853 5669999999998 7888877766775 454
No 93
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.72 E-value=0.024 Score=53.93 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=40.4
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. .++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 471 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMNIQELSTALQYDIPVKII 471 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEE
Confidence 468888888888888874 4556899999999654 5888889999998764
No 94
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=94.70 E-value=0.023 Score=54.20 Aligned_cols=51 Identities=24% Similarity=0.184 Sum_probs=40.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++-|+|+.|||+..- .+++.+..++||++-+
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~~~v 480 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMNLQELGTIAQYNLPIKII 480 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhhHHHHHHHHHhCCCeEEE
Confidence 4578899899999988884 3567999999999755 4788888999998643
No 95
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.69 E-value=0.036 Score=53.09 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=40.6
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|-.+|-|+|+++|. .++-|||+.|||+..- .+.+.+..++||++.+
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvi~v 480 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMCIQEMSTAVQYNLPVKIF 480 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhccHHHHHHHHHhCCCeEEE
Confidence 378888888888888873 4667999999999654 5788899999998764
No 96
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=94.49 E-value=0.038 Score=52.57 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=38.2
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh----HHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE----VSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG----~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|.|+++| ..++.++|++|||+...+ ..+.+..++||++.+
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~iv 482 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVV 482 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEE
Confidence 46788877777777665 457789999999998765 355667799998765
No 97
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.48 E-value=0.037 Score=52.90 Aligned_cols=51 Identities=24% Similarity=0.199 Sum_probs=41.2
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|+|+.|||+.. -.+++.+..++||++.+
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~lpviiv 487 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMCIQELSTCLQYDTPVKII 487 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcCHHHHHHHHHcCCCeEEE
Confidence 3368888888888888884 456799999999965 45788899999998765
No 98
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.47 E-value=0.032 Score=53.23 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=39.5
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|-.+|.|+|+++|. .++.|||+.|||+..- .+++.+..++||++.+
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~~~el~Ta~~~~lpv~iv 485 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGISMNEVMTAVRHNWPVTAV 485 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhccHHHHHHHHHhCCCeEEE
Confidence 4477888888888888873 3567999999998655 4666677899998754
No 99
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.44 E-value=0.049 Score=48.34 Aligned_cols=48 Identities=25% Similarity=0.172 Sum_probs=40.0
Q ss_pred CCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHH
Q 029082 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVS 182 (199)
Q Consensus 135 ~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f 182 (199)
..++...++..|.+.+.|.|++.|.+..+++..++|+.|||++..--|
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~ 108 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF 108 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH
Confidence 356677888999999999999999988777788999999997754333
No 100
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.42 E-value=0.028 Score=53.96 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=40.5
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
.+++|..+|.|+|+++|. .++-|+|+.|||+.. -.+++.+..++||++.+
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~iv 497 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMTNQELATCAIEGIPIKVA 497 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhccHHHHHHHHHcCCCeEEE
Confidence 367888888888888874 456689999999976 77899999999998754
No 101
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.42 E-value=0.034 Score=52.35 Aligned_cols=51 Identities=29% Similarity=0.259 Sum_probs=40.7
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|+|+.|||+..-. +.+.+..++||++.+
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~iv 458 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHI 458 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEE
Confidence 3468889889899988874 35569999999997654 778888899999765
No 102
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=94.41 E-value=0.022 Score=53.82 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=41.0
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++-|+|+.|||+. +-.+++.+..++||++.+
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~v 454 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLTIQELGSMLRDKQHPIIL 454 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEE
Confidence 3478888888888888873 45668999999996 456888889999998865
No 103
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=94.36 E-value=0.036 Score=53.07 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=39.7
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC---hhHHHHHHHh-----ccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS---EEVSFLFLIH-----QLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats---eG~f~Eal~~-----~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|+|+.|||+.. -.+.+.+..+ +||++.+
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviiv 471 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVL 471 (597)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEEE
Confidence 3367888888888888874 456689999999984 3588888877 8998765
No 104
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=94.30 E-value=0.053 Score=52.09 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=41.4
Q ss_pred ccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh---hHHHHHHHhccchhhh
Q 029082 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---EVSFLFLIHQLVIREI 195 (199)
Q Consensus 137 ~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse---G~f~Eal~~~lP~~~~ 195 (199)
++....+.+|..+|.|.|+++| ..++-||+++|||+..- .+++.+..+++|++.+
T Consensus 397 ~~~~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~v 454 (595)
T TIGR03336 397 GTVDTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVV 454 (595)
T ss_pred cccceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEE
Confidence 3334457788888888888776 34566999999999863 5777788899998755
No 105
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.27 E-value=0.036 Score=52.65 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=38.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|.|+|+++|. .++-|+|+.|||+..-. +.+.+..++||++-+
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~iv 474 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMTLQELSVIKELSLPVKVV 474 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence 3367888888888888874 45678999999998753 455567799998654
No 106
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.16 E-value=0.063 Score=47.19 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=39.0
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCc---cChhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG---TSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGa---tseG~f~Eal~~~lP~~~~ 195 (199)
.+..|..+|.|+|+.+| ..+.-|+++.|||. .+-+++..|...++|++-+
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vI 110 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYI 110 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEE
Confidence 45678888888888887 34566999999993 6677888888899997644
No 107
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.11 E-value=0.045 Score=52.24 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=40.1
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
.+++|..+|.|+|+++|. .++-|+|++|||+.. -.+++.+..++||++.+
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~v 469 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIAEYDIPVVIC 469 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 368888888888888873 344689999999976 66788888999998754
No 108
>PLN02470 acetolactate synthase
Probab=94.07 E-value=0.042 Score=52.42 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=40.2
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|-.+|.|+|+++|. .++-|+|+.|||+..- .+++.+..++||++-+
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~iv 476 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMNIQELATIHVENLPVKIM 476 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 477888888888888874 3556899999999764 5888889999998754
No 109
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.02 E-value=0.059 Score=51.25 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=40.7
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~iv 471 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMNIQELSTALQYELPVLVL 471 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 3378888888888888873 4556899999998654 5788889999998754
No 110
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.02 E-value=0.052 Score=51.48 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.7
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
+.+|..+|.|+|+++|. .++-|+|+.|||+. +-.+.+.+..++||++.+
T Consensus 414 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v 464 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVA 464 (561)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEE
Confidence 68888888888888874 45568999999986 456788888999998765
No 111
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.99 E-value=0.036 Score=52.71 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=40.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+++|..+|-|+|+++|. .++-|+|+.|||+..-. +++.+..++||++.+
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v 468 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMTNQELAILNIYKVPIKVV 468 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 3478899888888888874 34568999999997554 889999999998754
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.88 E-value=0.061 Score=50.77 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=40.1
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. .++-|+|++|||+.. -.+.+.+..++||++.+
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~iv 451 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIV 451 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 377888888888888874 455689999999975 56788888899998754
No 113
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.64 E-value=0.058 Score=51.86 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=39.8
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .++-|+|+.|||+.. -.+++.+..++||++.+
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpvi~v 484 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMNIQELGTLAQYGINVKTV 484 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEE
Confidence 4477888888888888774 456689999999865 45688888899999765
No 114
>PRK08617 acetolactate synthase; Reviewed
Probab=93.25 E-value=0.072 Score=50.32 Aligned_cols=50 Identities=28% Similarity=0.210 Sum_probs=38.8
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|+|+++|. .++-++|+.|||+..- .+.+.+..++||++-+
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~v 464 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHI 464 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEE
Confidence 457888888888877763 4567899999999764 4778888899998754
No 115
>PRK08611 pyruvate oxidase; Provisional
Probab=93.18 E-value=0.072 Score=50.80 Aligned_cols=50 Identities=30% Similarity=0.306 Sum_probs=39.1
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|-|+|+++|. .++-|+|++|||+..-. +++.+..++||++.+
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iiv 458 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVV 458 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEE
Confidence 477888888888888764 45568999999997655 788888899997654
No 116
>PRK08322 acetolactate synthase; Reviewed
Probab=92.88 E-value=0.096 Score=49.35 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=40.0
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|. .++-++|++|||+..- .+++.+..++||++.+
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ii 456 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVL 456 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEE
Confidence 3468899888888888874 4556999999999654 5677777899998865
No 117
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.71 E-value=0.18 Score=48.28 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=39.8
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCc--cChhHHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG--TSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGa--tseG~f~Eal~~~lP~~~~ 195 (199)
+..+.+|..+|-|+|+++| ..++-|+|+.|||+ .+-.+++.+.-++||++.+
T Consensus 405 ~~~GtMG~glPaAIGAkla----~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~iv 458 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLA----APDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIV 458 (550)
T ss_pred CCCccccchHHHHHHHHhh----CCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEE
Confidence 4556677777777776665 44778999999998 4667888888899998765
No 118
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=92.59 E-value=0.15 Score=44.75 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=34.3
Q ss_pred cccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC-hhHHH--HHHHhccchhhh
Q 029082 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EEVSF--LFLIHQLVIREI 195 (199)
Q Consensus 144 ~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats-eG~f~--Eal~~~lP~~~~ 195 (199)
+.|-.+|.|+|+++| ..++-|+|+.|||+.- .|..+ -|...+|||+.+
T Consensus 69 ~~G~alPaAiGaklA----~Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iI 119 (277)
T PRK09628 69 THGRAVAYATGIKLA----NPDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFI 119 (277)
T ss_pred ccccHHHHHHHHHHH----CCCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEE
Confidence 557777777777776 4567899999999863 34333 367899998754
No 119
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=92.39 E-value=0.058 Score=51.09 Aligned_cols=48 Identities=23% Similarity=0.148 Sum_probs=37.9
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
+.+|..+|-|+|+++| . ++-|+|+.|||+... .+++.+..++||++.+
T Consensus 425 ~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i~iv 474 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDLNGLLLLKQVPAPLTIV 474 (568)
T ss_pred cchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCcHHHHhhcccCCCeEEE
Confidence 5688888888898887 2 445799999999884 5777777889998654
No 120
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.26 E-value=0.085 Score=49.94 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=39.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|-|+|+++|. .+++ +++.|||+.. -.+++.+..++||++.+
T Consensus 401 ~~g~mG~glpaaiGa~lA~----~~r~-v~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 452 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS----GKRI-LTLVGDGAFQMTGWELGNCRRLGIDPIVI 452 (535)
T ss_pred ccchhhhHHHHHHHHHhCC----CCCe-EEEEeChHHHhHHHHHHHHHHcCCCcEEE
Confidence 3478999999999999984 2344 6799999865 46888888999998865
No 121
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.23 E-value=0.12 Score=48.98 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=39.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
..+.+|-.+|.|+|+++|. .++-++|+.|||+.. -.+++.+..++||++-+
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~iv 471 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISV 471 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcchHHHHHHHHhCCCeEEE
Confidence 3478888888888888874 456799999999964 45788888899998654
No 122
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.14 E-value=0.12 Score=49.03 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=40.3
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|-.+|-|+|+++|.. +++-|+|+.|||+..- .+++.+..++||++.+
T Consensus 394 ~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~iv 447 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMTMMELITAKKYDLPVKII 447 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEE
Confidence 35788888888888888742 1567999999999654 5788888899998754
No 123
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.00 E-value=0.18 Score=48.09 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=37.8
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
.+.+|..+|.|+|+++| ..++.|+++.|||+..- .+++.+..++||++.+
T Consensus 407 ~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~V 458 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINI 458 (575)
T ss_pred cchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEE
Confidence 46778777777777765 45667999999998654 4677777899998865
No 124
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=90.66 E-value=8.8 Score=38.21 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=57.2
Q ss_pred HHHHHHhhccCC------CeeecCCCchH------HHHhcC-CCHHHHHHHhhcCCCCCCCCCCCCc--cc-CCCCCccc
Q 029082 76 INIASAAAIKND------DFVVPQYREPG------VLLWRG-FSMQEFANQCFGNKADYGKGRQMPI--HY-GSNKHNYF 139 (199)
Q Consensus 76 ~~vg~~~al~~~------D~~~~~yR~~~------~~l~rG-~~~~~~l~e~~g~~~g~~~Gr~~~~--H~-~~~~~~~~ 139 (199)
--|+..+.+++. |.+|-. .|+ .+..-| ++.++ |..+-.-. .|.+.|. |. -.++.-=|
T Consensus 117 yev~fnhffr~~~~~~ggDlV~~q--gHaSPg~yArafLeGRlseeq-LdnFRqev----~g~gl~SYPhp~lmpdfwqF 189 (887)
T COG2609 117 YEVGFNHFFRAKSEKDGGDLVFFQ--GHASPGIYARAFLEGRLTEEQ-LDNFRQEV----DGKGLSSYPHPKLMPDFWQF 189 (887)
T ss_pred HHHHHHHHhcCcCCCCCCceEEEe--cCCCchHHHHHHHhccccHHH-HHHHHHhc----cCCCCCCCCCCcCCcccccc
Confidence 367777778765 988765 444 222234 34433 33322222 1333332 22 11221112
Q ss_pred cccccccccchhhhHHHHHHHh-------CCCCCEEEEEeCCCccChhHHHHHH
Q 029082 140 TVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEEVSFLFL 186 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~-------~g~~~vvv~~~GDGatseG~f~Eal 186 (199)
+++++|-+...|.=.|.-+|| +..++-|+||+|||.+.|++-.+|+
T Consensus 190 -pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi 242 (887)
T COG2609 190 -PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAI 242 (887)
T ss_pred -CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHH
Confidence 334556555555545554554 2367899999999999999999996
No 125
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=89.76 E-value=6.1 Score=40.78 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcccccCCCchhHHHHHHHhhcc------CCCeee-cCCCchHHHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYE-AQRQGRISFYLTTSGEEAINIASAAAIK------NDDFVV-PQYREPGVLL 101 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~-l~rqG~ig~~~~~~GqEa~~vg~~~al~------~~D~~~-~~yR~~~~~l 101 (199)
..+.++++.+.+.++..-.-.||.-+.. ...|.+ ++-.|-|..-..+-..|+ -+.+++ ..||+.=-.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR----FslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR----FSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee----eeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 5678999999999999999999987633 333444 344555555322322232 123443 4499887666
Q ss_pred h--cCCCHHHHHHHhhcCCCCC-CCCCC-CCcccCCCC-----------CccccccccccccchhhhHHHHHHHh--C-C
Q 029082 102 W--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKM--D-R 163 (199)
Q Consensus 102 ~--rG~~~~~~l~e~~g~~~g~-~~Gr~-~~~H~~~~~-----------~~~~~~~~~vG~q~~~A~G~A~A~k~--~-g 163 (199)
+ -|.|-.++|.|+=|+-+.- ..|.+ -..|.+... .-+..+.|++-+==|..-|++-|.+= . |
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 5 5999999999999986532 22322 233433211 12233445555555667788887642 1 2
Q ss_pred C---CCEEEEEeCCCc-cChhHHHHHHH----hccc
Q 029082 164 K---DACAVTYFGDGG-TSEEVSFLFLI----HQLV 191 (199)
Q Consensus 164 ~---~~vvv~~~GDGa-tseG~f~Eal~----~~lP 191 (199)
. .-+-+++.||.| +.||.++|+|| |++|
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~ 678 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYR 678 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCC
Confidence 2 346889999999 89999999986 6776
No 126
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=89.72 E-value=0.45 Score=43.45 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=51.2
Q ss_pred cccCCCchhHHHHHHHhhccCC-CeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCcccccccc
Q 029082 66 FYLTTSGEEAINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSST 144 (199)
Q Consensus 66 ~~~~~~GqEa~~vg~~~al~~~-D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~ 144 (199)
+|..+.||=+.++-+..-|+-. --++|.|-.--. -+.+++.+ |... | +.+.|.+-.- |.+..
T Consensus 75 ~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~------Gl~~L~~~-FS~P-----g-GipSH~~p~t----PGsIh 137 (379)
T PF09364_consen 75 IYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEE------GLRRLFRQ-FSFP-----G-GIPSHVSPET----PGSIH 137 (379)
T ss_dssp --EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHH------HHHHHHHH-BTST-----T-SB-SSS-TTS----TT-S-
T ss_pred EEEecCCCCchhhhhhhhhcCccccccCCCCCCHH------HHHHHHHh-CCCC-----C-CCccccCcCC----CCccC
Confidence 5566666666655444444311 112222211111 13557777 4432 1 2455644333 34445
Q ss_pred ccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH
Q 029082 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF 185 (199)
Q Consensus 145 vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea 185 (199)
-|..+..|.-.|++..+.+.|-+|+|++|||+..+|-.-.+
T Consensus 138 EGGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~s 178 (379)
T PF09364_consen 138 EGGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAAS 178 (379)
T ss_dssp --SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHH
T ss_pred cCcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCccccc
Confidence 55555555555556666889999999999999999976665
No 127
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=86.45 E-value=12 Score=38.17 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccCCCchhHHHHHHHhhc------cCCCeeecC-CCchHHHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~r-qG~ig~~~~~~GqEa~~vg~~~al------~~~D~~~~~-yR~~~~~l 101 (199)
.+.++.|+.+.+++++..+--||.-+-..+. |+| ++-.|-|+.-.++-..+ .-.+++..- ||+.=-.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR----FSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc----ccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 5678999999999999999999877644332 333 34466676643333322 234776655 99887666
Q ss_pred h--cCCCHHHHHHHhhcCCCCCCCCCCCCcccCC--------CC--CccccccccccccchhhhHHHHHHHhCC-----C
Q 029082 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGS--------NK--HNYFTVSSTIATQLPHAVGAAYALKMDR-----K 164 (199)
Q Consensus 102 ~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--------~~--~~~~~~~~~vG~q~~~A~G~A~A~k~~g-----~ 164 (199)
. .|.|++.+|.|+-|+..-.-.-.+-..|.+. .+ .-..++.|++-.--|+..|.+-|..-+. .
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 4 7999999999998865321111112233321 11 1235667888888899999999876432 2
Q ss_pred CCEEEEEeCCCc-cChhHHHHHHH
Q 029082 165 DACAVTYFGDGG-TSEEVSFLFLI 187 (199)
Q Consensus 165 ~~vvv~~~GDGa-tseG~f~Eal~ 187 (199)
+.+.+...||.| ..||-+.|.+|
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etln 348 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLN 348 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHH
Confidence 357889999998 57999999985
No 128
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=83.89 E-value=8.4 Score=37.54 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhc-------cCCCeeecC-CCchHHHHh-
Q 029082 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI-------KNDDFVVPQ-YREPGVLLW- 102 (199)
Q Consensus 32 ~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al-------~~~D~~~~~-yR~~~~~l~- 102 (199)
.+.+|++.++-+.|+.+..||.-+...+.. +.-| .+.|-|-.- +...-| +-+|++..- ||+.--+++
T Consensus 153 ~l~keEr~~i~~Lmlksq~fD~FlatKFpT--vKRY-GgEGAESM~-aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 153 QLGKEERCEIAELMLKSQAFDNFLATKFPT--VKRY-GGEGAESML-AFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HhhHHHHHHHHHHHHhhhhHHHHHHhccch--hhhh-ccccHHHHH-HHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 456778888888899999998766543322 1111 223333331 121111 235776655 898775554
Q ss_pred -cCCCHHHHHHHhhcCCCCC------------------CCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCC
Q 029082 103 -RGFSMQEFANQCFGNKADY------------------GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR 163 (199)
Q Consensus 103 -rG~~~~~~l~e~~g~~~g~------------------~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g 163 (199)
...||..++..+-|.+.=+ -+|...+.| .-++|..|.+-+-=|.|+|-+-+.....
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lh-----vtMlpNPSHLEAvNPVAmGKtR~rqqsr 303 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLH-----VTMLPNPSHLEAVNPVAMGKTRSRQQSR 303 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceE-----EEecCChhhhhccCchhhcchhHHHHhh
Confidence 5789999999888876422 123333333 2467888999999999999887765321
Q ss_pred -------------CCC-EEEEEeCCCc-cChhHHHHHHH-hccchhhh
Q 029082 164 -------------KDA-CAVTYFGDGG-TSEEVSFLFLI-HQLVIREI 195 (199)
Q Consensus 164 -------------~~~-vvv~~~GDGa-tseG~f~Eal~-~~lP~~~~ 195 (199)
.+. +-+...||+| +.||-++|.+| -++|+..+
T Consensus 304 ~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrv 351 (913)
T KOG0451|consen 304 GEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRV 351 (913)
T ss_pred cCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceee
Confidence 123 4566789998 57999999986 67888765
No 129
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=79.57 E-value=0.96 Score=43.11 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=34.6
Q ss_pred ccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH---HHhccchh
Q 029082 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF---LIHQLVIR 193 (199)
Q Consensus 139 ~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea---l~~~lP~~ 193 (199)
-+-+++||-.+|-|.|+++|.+ ++.++.|+||||.+-= +-|= +.|+||.+
T Consensus 407 Q~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlT-vQEiStmiR~gl~p~ 459 (557)
T COG3961 407 QPLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLT-VQEISTMIRWGLKPI 459 (557)
T ss_pred ccchhhcccccHhhhhhhhcCC----CccEEEEEcCchhhhh-HHHHHHHHHcCCCcE
Confidence 4566788888888888888754 4779999999986531 2222 34777754
No 130
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=79.14 E-value=2.1 Score=42.31 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=40.0
Q ss_pred CCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH
Q 029082 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF 185 (199)
Q Consensus 127 ~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea 185 (199)
.+.|..-.-.+....-+.+|-.+.+|.|+|+ ...+-++.|++|||...+|..-.+
T Consensus 137 i~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplats 191 (793)
T COG3957 137 IGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATS 191 (793)
T ss_pred cccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccc
Confidence 4567665556666666777777777666654 678889999999998877765444
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=76.32 E-value=3.2 Score=39.47 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=30.8
Q ss_pred hhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhhh
Q 029082 152 AVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREIS 196 (199)
Q Consensus 152 A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~~ 196 (199)
..|.|+|.+.--.++-++|..||+|.. -=++-...-+||||+.+-
T Consensus 435 G~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~Lpvv~vV 481 (571)
T KOG1185|consen 435 GLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYKLPVVIVV 481 (571)
T ss_pred chhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhcCCeEEEE
Confidence 345555555556888899999999864 223333357999998763
No 132
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=70.86 E-value=3.3 Score=39.51 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=31.6
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHH--HHHhccchh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFL--FLIHQLVIR 193 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~E--al~~~lP~~ 193 (199)
.++||-..+-+.|+|+| .+++.++.|+|||+.+.=--+= .+.|+||..
T Consensus 414 wgsIG~svga~lG~a~a----~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~ 463 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQA----APEKRVILFIGDGSFQLTVQEISTMIRWGLKPI 463 (561)
T ss_pred Eeeccccchhhhhhhhc----cCCceEEEEecCccceeeHHHHHHHHhcCCCcE
Confidence 45566666666666665 4558899999999987643222 245888764
No 133
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=65.63 E-value=36 Score=34.16 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=105.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccccCCCchhHHHHHHHhh------ccCCCeeecC-CCchHHH
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVL 100 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rq-G~ig~~~~~~GqEa~~vg~~~a------l~~~D~~~~~-yR~~~~~ 100 (199)
....++.|+-.-+|.+..++-.||+-+...+.. .|.| -.|-|..-=|+-.- |.-++.+..- ||+.--.
T Consensus 242 ~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNv 317 (1017)
T KOG0450|consen 242 GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNV 317 (1017)
T ss_pred CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHH
Confidence 356789999999999999999999877554432 2222 13445442222111 2335666654 8987655
Q ss_pred Hhc--CCCHHHHHHHhhcCCCCCCCCCC-CCcccC---CCCC---------ccccccccccccchhhhHHHHHHHhC---
Q 029082 101 LWR--GFSMQEFANQCFGNKADYGKGRQ-MPIHYG---SNKH---------NYFTVSSTIATQLPHAVGAAYALKMD--- 162 (199)
Q Consensus 101 l~r--G~~~~~~l~e~~g~~~g~~~Gr~-~~~H~~---~~~~---------~~~~~~~~vG~q~~~A~G~A~A~k~~--- 162 (199)
|+- -.|++++++|+-|.+. .-.|.+ -..|.+ .+.. -.+...|.+-+.=|...|=.-|..+.
T Consensus 318 L~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D 396 (1017)
T KOG0450|consen 318 LANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGD 396 (1017)
T ss_pred HHHHHhhHHHHHHHhccCCCC-CcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccc
Confidence 543 2699999999877432 212221 223332 1111 24677888999999999998888764
Q ss_pred --CCCCEEEEEeCCCcc-ChhHHHHHH-Hhccchh
Q 029082 163 --RKDACAVTYFGDGGT-SEEVSFLFL-IHQLVIR 193 (199)
Q Consensus 163 --g~~~vvv~~~GDGat-seG~f~Eal-~~~lP~~ 193 (199)
+++...+...||+|. .||.+||++ +.+||=.
T Consensus 397 ~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~Y 431 (1017)
T KOG0450|consen 397 EEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSY 431 (1017)
T ss_pred cccceeEEEEEecchhhccCceEEEeeccccCCCc
Confidence 456689999999995 699999998 4777743
No 134
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=62.39 E-value=6 Score=34.58 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=25.3
Q ss_pred CCCCEEEEEeCCCccChhHHHHHHHhccchhhhhc
Q 029082 163 RKDACAVTYFGDGGTSEEVSFLFLIHQLVIREISM 197 (199)
Q Consensus 163 g~~~vvv~~~GDGatseG~f~Eal~~~lP~~~~~~ 197 (199)
|++.+++|.+|||...+ -.|-..+.|++.|+.
T Consensus 227 g~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~~ 258 (274)
T TIGR01658 227 GHPKVRFCAIGDGWEEC---TAAQAMNWPFVKIDL 258 (274)
T ss_pred CCCCceEEEeCCChhHH---HHHHhcCCCeEEeec
Confidence 56689999999999876 234568889988874
No 135
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=60.19 E-value=6.5 Score=42.52 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=35.1
Q ss_pred ccccccc--cchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHH--hccchhhh
Q 029082 141 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLI--HQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~--q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~--~~lP~~~~ 195 (199)
.-+..|- .+|-|+|+++|. ++-|+|++|||+.. -.+++-+.. ++||++-+
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iV 812 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTIL 812 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEE
Confidence 4455665 588899999874 45689999999865 345555554 38998644
No 136
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=58.54 E-value=12 Score=33.18 Aligned_cols=40 Identities=20% Similarity=-0.012 Sum_probs=29.6
Q ss_pred cccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCC-ccChhH
Q 029082 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEEV 181 (199)
Q Consensus 138 ~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDG-atseG~ 181 (199)
.....+.-|-+.+.|.|+.+|.+.. -|+++-||| +.+.|-
T Consensus 65 ~~~~hs~~gra~a~atGik~A~~~l----~Viv~gGDG~~~dIG~ 105 (294)
T COG1013 65 PPWVHSLHGRAAAVATGIKLANPAL----SVIVIGGDGDAYDIGG 105 (294)
T ss_pred CCceeeccCcchhhHHHHHHhccCC----eEEEEecchhHhhhhh
Confidence 3445566777888888888876654 799999999 666664
No 137
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=50.04 E-value=79 Score=27.04 Aligned_cols=70 Identities=11% Similarity=0.257 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecC-CCchHHHHhcCCCHHHHHH
Q 029082 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ-YREPGVLLWRGFSMQEFAN 112 (199)
Q Consensus 34 ~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~-yR~~~~~l~rG~~~~~~l~ 112 (199)
++|..+++||. |++-++ .+.....|.|.+.+..|+|-++= + .--..++|++.+ |. -|+++..++.
T Consensus 65 dDerfLE~YR~----kRl~E~-r~~~~k~kfG~V~~ISg~dyv~E-V-T~As~gvwVvvhLy~-------~gvp~c~Ll~ 130 (240)
T KOG3170|consen 65 DDERFLEMYRI----KRLAEW-RATAEKAKFGEVFPISGPDYVKE-V-TKASEGVWVVVHLYK-------QGVPLCALLS 130 (240)
T ss_pred cHHHHHHHHHH----HHHHHH-HHHHHHhcccceeeccchHHHHH-H-HhccCccEEEEEeec-------cccHHHHHHH
Confidence 34446666654 444433 23334456788888889887742 1 222458998876 44 4777777777
Q ss_pred HhhcC
Q 029082 113 QCFGN 117 (199)
Q Consensus 113 e~~g~ 117 (199)
.++-.
T Consensus 131 ~~l~~ 135 (240)
T KOG3170|consen 131 HHLQS 135 (240)
T ss_pred HHHHH
Confidence 77644
No 138
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=34.79 E-value=39 Score=25.54 Aligned_cols=45 Identities=16% Similarity=-0.016 Sum_probs=29.1
Q ss_pred hhHHHHHHHhCCCCCEEEEEeCCCccChh-HHHHHHHhccchhhhh
Q 029082 152 AVGAAYALKMDRKDACAVTYFGDGGTSEE-VSFLFLIHQLVIREIS 196 (199)
Q Consensus 152 A~G~A~A~k~~g~~~vvv~~~GDGatseG-~f~Eal~~~lP~~~~~ 196 (199)
|+++|.+.-+.+...++++.+|-|.++-- .++++...++|++-+.
T Consensus 47 a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~ 92 (154)
T cd06586 47 AAGAAAGYARAGGPPVVIVTSGTGLLNAINGLADAAAEHLPVVFLI 92 (154)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 55666666555555566667788887542 3456667788887553
No 139
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=33.98 E-value=62 Score=30.12 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecC
Q 029082 34 SEGVAIKMYNDMV-----------TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (199)
Q Consensus 34 ~~e~l~~lyr~M~-----------~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~ 93 (199)
+.|+..++|..=. ....||+|+..+ +|-++....+.||-|+-.++..-++++|-++++
T Consensus 39 d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaL--EGG~aa~a~aSG~AA~~~ai~~la~aGD~iVss 107 (426)
T COG2873 39 DTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAAL--EGGVAALAVASGQAAITYAILNLAGAGDNIVSS 107 (426)
T ss_pred CHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHh--hcchhhhhhccchHHHHHHHHHhccCCCeeEee
Confidence 4566666654322 567899998876 566788888999999988888888999998887
No 140
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=31.85 E-value=44 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCCEEEEEeCCCccCh
Q 029082 154 GAAYALKMDRKDACAVTYFGDGGTSE 179 (199)
Q Consensus 154 G~A~A~k~~g~~~vvv~~~GDGatse 179 (199)
+-++++.+++-+--++|.+|||||.=
T Consensus 161 a~~i~~lrk~~~~~~~~mvGDGatDl 186 (227)
T KOG1615|consen 161 AEVIALLRKNYNYKTIVMVGDGATDL 186 (227)
T ss_pred HHHHHHHHhCCChheeEEecCCcccc
Confidence 56777788888888999999999863
No 141
>PF07356 DUF1481: Protein of unknown function (DUF1481); InterPro: IPR010858 This family consists of several hypothetical bacterial proteins of around 230 residues in length. Members of this family are often referred to as YjaH and are found in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=27.88 E-value=84 Score=26.34 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.4
Q ss_pred eCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCc--ccccCCCchhHHH
Q 029082 18 LDDDGQPFP-----DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYE---AQRQGRI--SFYLTTSGEEAIN 77 (199)
Q Consensus 18 l~~~G~~~~-----~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~---l~rqG~i--g~~~~~~GqEa~~ 77 (199)
.|.+|+++= +...-+++.+++..+-.....++..-+.... ...||+- +.+.+|.|+|-..
T Consensus 72 Fd~~G~avfmQr~l~g~~~pLs~d~ia~y~~~A~~i~~~s~~l~~g~v~L~QG~W~~~~~~tC~G~~~~~ 141 (195)
T PF07356_consen 72 FDKDGEAVFMQRQLDGRRLPLSSDQIARYQFEAQRILELSKALRKGGVRLIQGYWQGGTFTTCAGQQYVR 141 (195)
T ss_pred ECCCCCEEEEEEEeCCeecCCCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEeeEecCCEEEECCCCceec
Confidence 688888761 1124578999999999998888887766544 2235554 4778899966553
No 142
>PHA00515 hypothetical protein
Probab=27.57 E-value=50 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 029082 39 IKMYNDMVTLQTMDTIFYEAQRQ 61 (199)
Q Consensus 39 ~~lyr~M~~~R~~d~~~~~l~rq 61 (199)
-++|..|.+-=.|..++-+..|.
T Consensus 10 pklystmflklvfskklpqairr 32 (53)
T PHA00515 10 PKLYSTMFLKLVFSKKLPQAIRR 32 (53)
T ss_pred hhHHHHHHHHHHHHhHhHHHHHH
Confidence 47899999988898888776664
No 143
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.39 E-value=32 Score=26.57 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 029082 30 FVKVSEGVAIKMYNDMVTLQT 50 (199)
Q Consensus 30 ~~~~~~e~l~~lyr~M~~~R~ 50 (199)
...+++|++.++|+.|.-+-.
T Consensus 90 le~l~deqi~QLyELm~ea~k 110 (125)
T KOG4100|consen 90 LEQLSDEQIGQLYELMKEAQK 110 (125)
T ss_pred HHHcCHHHHHHHHHHHHHHHh
Confidence 457899999999999987665
No 144
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=24.06 E-value=43 Score=23.78 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred CCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHH
Q 029082 11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYN 43 (199)
Q Consensus 11 ~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr 43 (199)
..|...++|.+|+.++.-...+.+.|++.++..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~ 73 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLN 73 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHH
Confidence 347889999999987653355778888877764
No 145
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.32 E-value=82 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHhhccCCCeeecCCC
Q 029082 75 AINIASAAAIKNDDFVVPQYR 95 (199)
Q Consensus 75 a~~vg~~~al~~~D~~~~~yR 95 (199)
+=+||.+..-+|-+.++|.||
T Consensus 35 ~RaVg~al~~np~~~~iPcHR 55 (80)
T TIGR00589 35 VRAVGGANGRNPLAILVPCHR 55 (80)
T ss_pred HHHHHHHHHhCCCCCCCCCce
Confidence 446777777788899999999
No 146
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=23.30 E-value=46 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhccCCCeeecCCC
Q 029082 73 EEAINIASAAAIKNDDFVVPQYR 95 (199)
Q Consensus 73 qEa~~vg~~~al~~~D~~~~~yR 95 (199)
.-+-+||.+.+-+|.+.++|.||
T Consensus 33 ~~ar~Vg~al~~np~~~~iP~HR 55 (85)
T PF01035_consen 33 KAARAVGSALARNPIPIIIPCHR 55 (85)
T ss_dssp TCHHHHHHHHHTSSCTTTSGGGG
T ss_pred ccHHHHHHHhccccccCCCCeEE
Confidence 44567888777888888999999
No 147
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=22.93 E-value=1.4e+02 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 029082 38 AIKMYNDMVTLQTMDTIFYEAQRQGRIS 65 (199)
Q Consensus 38 l~~lyr~M~~~R~~d~~~~~l~rqG~ig 65 (199)
.-++||+-.....++..+.++..+|+|.
T Consensus 4 yYElYRrs~ig~~L~dalD~lis~g~is 31 (113)
T COG5123 4 YYELYRRSMIGKVLEDALDELISAGVIS 31 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 4689999999999999999999999974
No 148
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.81 E-value=1.5e+02 Score=27.60 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecC
Q 029082 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (199)
Q Consensus 47 ~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~ 93 (199)
..+.||+++.++... ......+.|..|+.+.+.+.++|+|.++..
T Consensus 62 tv~~lE~~la~leg~--~~av~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 578899999888643 234557789999988887778999987655
No 149
>cd06445 ATase The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of
Probab=21.92 E-value=59 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=17.3
Q ss_pred hHHHHHHHhhccCCCeeecCCC
Q 029082 74 EAINIASAAAIKNDDFVVPQYR 95 (199)
Q Consensus 74 Ea~~vg~~~al~~~D~~~~~yR 95 (199)
-+=+||.+..-+|.+.++|.||
T Consensus 32 ~~R~Vg~al~~np~~~~vP~HR 53 (79)
T cd06445 32 AARAVGSALARNPIPILIPCHR 53 (79)
T ss_pred cHHHHHHHHHhCCCCCCCCcee
Confidence 3557777777778888999999
No 150
>PRK08452 flagellar protein FlaG; Provisional
Probab=21.89 E-value=93 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.6
Q ss_pred CCCCceeeeCCC-CCCCCCCCCCCCCHHHHHHHHHHHHH
Q 029082 10 ERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMVT 47 (199)
Q Consensus 10 ~~~~~~~~l~~~-G~~~~~~~~~~~~~e~l~~lyr~M~~ 47 (199)
.+...++|+|.+ |+++- .++.|+++++++.|.-
T Consensus 81 ~~~~vVkVvD~~T~eVIR-----qIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIR-----EIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceee-----eCCCHHHHHHHHHHHH
Confidence 455789999988 55543 4778999999888754
No 151
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=21.78 E-value=2.4e+02 Score=20.46 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred HHHhcCCCHHHHHHHhhcCC
Q 029082 99 VLLWRGFSMQEFANQCFGNK 118 (199)
Q Consensus 99 ~~l~rG~~~~~~l~e~~g~~ 118 (199)
.+|-+|++++++..++-|-.
T Consensus 49 ~~Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 49 LALRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred HHHHcCCCHHHHHHHhcCCC
Confidence 56668999999999986654
No 152
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=21.56 E-value=1.6e+02 Score=26.87 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecCCCchH
Q 029082 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPG 98 (199)
Q Consensus 46 ~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~ 98 (199)
-.+|.+|.++.++... ...++...|--|-++++.+.++|.+-++...+.|-
T Consensus 35 ~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi 85 (342)
T COG2008 35 PTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHCQPGESVICHETAHI 85 (342)
T ss_pred HHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhcCCCCeEEEeccccc
Confidence 4678899999998755 54333445668999999999999998888866554
No 153
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=21.52 E-value=1.3e+02 Score=21.30 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=30.7
Q ss_pred CceeeeCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cccccCCCchhHH
Q 029082 13 PCYRVLDDDGQPFPDSSFVKVS-EGVAIKMYNDMVTLQTMDTIFYEAQRQGR---ISFYLTTSGEEAI 76 (199)
Q Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~-~e~l~~lyr~M~~~R~~d~~~~~l~rqG~---ig~~~~~~GqEa~ 76 (199)
..+.+|+++|...++= +++ .+++ -.++.+.+..|+ +-+..++.|+|.+
T Consensus 13 G~lsLM~e~G~~kdDl---~lP~~~~l-------------~~~I~~~f~~gk~~v~VtVlsAmGeE~i 64 (75)
T cd04469 13 GSIVAMTETGDVKQGL---PVIDQSNL-------------WTRLKTAFESGRGSVRVLVVNDGGRELV 64 (75)
T ss_pred CeEEEEcCCCCcccCc---cCCCcchH-------------HHHHHHHHHCCCCcEEEEEEccCCeEeE
Confidence 5788999999986652 243 3332 233444455666 3577888999875
No 154
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=21.02 E-value=1.5e+02 Score=27.61 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeee
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~ 91 (199)
..-...|++.+.+.+.... ......|.+|..+++.+.++|+|.+.
T Consensus 52 ~~g~~~Leeaia~~~g~~~--vv~t~~Gt~Al~la~~al~~pGD~V~ 96 (431)
T cd00617 52 SKSFYDLEDAVQDLFGFKH--IIPTHQGRGAENILFSILLKPGRTVP 96 (431)
T ss_pred CCCHHHHHHHHHHHHCCCe--EEEcCCHHHHHHHHHHHhCCCCCEEc
Confidence 3345788888888876543 45566788999888777789999883
No 155
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.92 E-value=2e+02 Score=26.48 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeeecC
Q 029082 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (199)
Q Consensus 47 ~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~~~ 93 (199)
..+.+|+++.++- .|.-.+..++ |..|+...+...++++|.++..
T Consensus 63 t~~~le~~la~LE-g~~~a~~~~S-GmaAi~~~~~~ll~~GD~Vv~~ 107 (395)
T PRK08114 63 THFSLQEAMCELE-GGAGCALYPC-GAAAVANAILAFVEQGDHVLMT 107 (395)
T ss_pred hHHHHHHHHHHHh-CCCeEEEEhH-HHHHHHHHHHHHcCCCCEEEEe
Confidence 3677898888864 4554555555 9999987777778999987775
Done!