Query 029082
Match_columns 199
No_of_seqs 120 out of 1290
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:31:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 3.2E-47 1.1E-51 344.0 19.9 195 1-195 20-218 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 2.7E-45 9.2E-50 332.2 17.8 182 12-194 51-236 (407)
3 2ozl_A PDHE1-A type I, pyruvat 100.0 8.9E-43 3.1E-47 311.8 15.9 164 29-194 27-195 (365)
4 1w85_A Pyruvate dehydrogenase 100.0 6.1E-42 2.1E-46 306.6 16.9 178 9-195 17-198 (368)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 1.2E-40 4.1E-45 297.6 20.1 185 9-194 10-199 (367)
6 2jgd_A 2-oxoglutarate dehydrog 100.0 1.4E-31 4.9E-36 262.3 6.0 178 11-191 169-379 (933)
7 2yic_A 2-oxoglutarate decarbox 100.0 1.6E-30 5.3E-35 253.6 6.0 175 13-191 91-308 (868)
8 2xt6_A 2-oxoglutarate decarbox 100.0 5.5E-30 1.9E-34 254.9 6.5 175 13-191 336-553 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 99.8 2.3E-19 8E-24 169.3 6.9 163 13-194 6-176 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 99.7 7E-18 2.4E-22 159.5 3.6 149 29-194 21-178 (629)
11 3rim_A Transketolase, TK; TPP, 99.3 9.9E-12 3.4E-16 119.1 9.2 139 43-191 24-198 (700)
12 3mos_A Transketolase, TK; thia 99.2 4.1E-11 1.4E-15 113.2 12.0 153 31-193 3-176 (616)
13 1r9j_A Transketolase; domains, 99.2 2.6E-11 8.8E-16 115.7 8.9 140 44-193 9-180 (673)
14 1itz_A Transketolase; calvin c 99.1 8.7E-11 3E-15 112.0 9.5 150 31-193 9-191 (675)
15 3kom_A Transketolase; rossmann 99.1 3.5E-11 1.2E-15 114.7 6.4 139 45-193 10-180 (663)
16 1gpu_A Transketolase; transfer 99.1 6E-11 2E-15 113.2 7.8 140 44-193 11-180 (680)
17 3uk1_A Transketolase; structur 99.1 1.1E-10 3.7E-15 112.0 8.2 140 44-193 48-219 (711)
18 2qtc_A Pyruvate dehydrogenase 99.1 2.1E-10 7E-15 112.4 9.7 140 44-191 81-251 (886)
19 2r8o_A Transketolase 1, TK 1; 99.1 1.7E-10 5.7E-15 109.9 8.1 140 44-193 7-178 (669)
20 3l84_A Transketolase; TKT, str 99.1 1.1E-10 3.6E-15 110.8 6.2 140 43-193 8-175 (632)
21 2e6k_A Transketolase; structur 99.0 2.1E-10 7E-15 109.0 7.1 140 44-193 11-182 (651)
22 3m49_A Transketolase; alpha-be 99.0 2.6E-10 8.7E-15 109.2 6.8 138 46-193 35-204 (690)
23 3ahc_A Phosphoketolase, xylulo 97.4 0.00015 5.2E-09 70.7 5.3 59 127-189 159-220 (845)
24 2vk8_A Pyruvate decarboxylase 97.3 6.8E-05 2.3E-09 69.2 1.4 56 140-195 410-467 (563)
25 2uz1_A Benzaldehyde lyase; thi 96.8 0.00038 1.3E-08 64.3 1.5 53 141-195 417-471 (563)
26 4feg_A Pyruvate oxidase; carba 96.7 0.00025 8.7E-09 66.2 -0.3 50 141-195 418-470 (603)
27 1ovm_A Indole-3-pyruvate decar 96.5 0.00053 1.8E-08 63.0 0.7 51 141-195 406-458 (552)
28 1q6z_A BFD, BFDC, benzoylforma 96.5 0.00054 1.8E-08 62.7 0.6 47 143-195 401-451 (528)
29 1ozh_A ALS, acetolactate synth 96.2 0.0015 5E-08 60.4 1.6 51 141-195 418-470 (566)
30 1v5e_A Pyruvate oxidase; oxido 96.1 0.00084 2.9E-08 62.4 -0.3 49 141-195 411-463 (590)
31 2pan_A Glyoxylate carboligase; 96.1 0.002 7E-08 60.0 2.2 51 140-194 439-491 (616)
32 2vbf_A Branched-chain alpha-ke 96.1 0.0017 5.7E-08 60.0 1.6 51 140-195 422-475 (570)
33 1ybh_A Acetolactate synthase, 96.1 0.0018 6.1E-08 60.1 1.7 51 140-194 423-475 (590)
34 2wvg_A PDC, pyruvate decarboxy 95.9 0.0024 8.1E-08 59.0 1.6 50 140-194 410-462 (568)
35 1t9b_A Acetolactate synthase, 95.8 0.0026 8.9E-08 60.4 1.8 52 140-195 510-563 (677)
36 2iht_A Carboxyethylarginine sy 95.8 0.0029 9.9E-08 58.5 1.9 50 141-194 434-485 (573)
37 2q28_A Oxalyl-COA decarboxylas 95.8 0.0031 1E-07 58.1 1.9 51 140-195 418-470 (564)
38 2vbi_A Pyruvate decarboxylase; 95.7 0.0025 8.5E-08 58.8 1.0 49 141-194 407-458 (566)
39 2c31_A Oxalyl-COA decarboxylas 95.7 0.003 1E-07 58.3 1.6 51 140-195 423-475 (568)
40 3eya_A Pyruvate dehydrogenase 95.7 0.0035 1.2E-07 57.6 1.9 51 141-195 404-456 (549)
41 2pgn_A Cyclohexane-1,2-dione h 95.6 0.0029 1E-07 58.7 1.1 50 142-195 423-474 (589)
42 2nxw_A Phenyl-3-pyruvate decar 95.5 0.0023 7.8E-08 59.1 0.0 49 142-194 421-471 (565)
43 3hww_A 2-succinyl-5-enolpyruvy 95.4 0.0031 1.1E-07 58.1 0.6 48 141-194 415-464 (556)
44 2x7j_A 2-succinyl-5-enolpyruvy 94.7 0.011 3.7E-07 55.1 1.8 47 143-194 455-503 (604)
45 3lq1_A 2-succinyl-5-enolpyruvy 91.2 0.03 1E-06 51.7 -0.8 44 146-195 439-484 (578)
46 2c42_A Pyruvate-ferredoxin oxi 30.3 26 0.00089 35.5 2.8 31 165-195 953-986 (1231)
47 2fwh_A Thiol:disulfide interch 25.3 85 0.0029 21.9 4.2 35 10-44 90-125 (134)
48 2lja_A Putative thiol-disulfid 22.5 68 0.0023 22.4 3.2 35 10-45 107-141 (152)
49 2a7w_A PRA-PH, phosphoribosyl- 21.5 38 0.0013 25.0 1.6 45 71-118 41-93 (116)
50 1yvw_A PRA-PH, phosphoribosyl- 20.3 42 0.0014 24.7 1.6 44 71-118 40-92 (115)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=3.2e-47 Score=344.00 Aligned_cols=195 Identities=44% Similarity=0.735 Sum_probs=186.2
Q ss_pred CccccCCCCCCCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHH
Q 029082 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (199)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~ 80 (199)
|+|++++....+|++||||+||+++++...+++++|+++++||.|+++|.||+++.++++||+++|++++.||||++||+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 68999887788999999999999998765688999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHH
Q 029082 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (199)
Q Consensus 81 ~~al~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k 160 (199)
+.+|+++||++++||+|++++.+|+++.++|++++|+.+|+++|+++++|+++++.++++.++++|.++|+|+|+|+|.+
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hCCCCCEEEEEeCCCccChhHHHHHHH----hccchhhh
Q 029082 161 MDRKDACAVTYFGDGGTSEEVSFLFLI----HQLVIREI 195 (199)
Q Consensus 161 ~~g~~~vvv~~~GDGatseG~f~Eal~----~~lP~~~~ 195 (199)
+++++.+++|++|||++++|.|||+++ |+||++-+
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v 218 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFF 218 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEE
Confidence 999999999999999999999999985 89997654
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=2.7e-45 Score=332.20 Aligned_cols=182 Identities=31% Similarity=0.441 Sum_probs=174.6
Q ss_pred CCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCCeee
Q 029082 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (199)
Q Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D~~~ 91 (199)
+|++||||+||+++++. .+++++|+++++||.|+++|.||+++.++++||+++|++++.||||++||++.+|+++||++
T Consensus 51 ~~~~~~ld~~g~~~~~~-~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~ 129 (407)
T 1qs0_A 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred CCeEEEECCCCCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence 57899999999998764 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEE
Q 029082 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (199)
Q Consensus 92 ~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~ 171 (199)
++||+|+.++++|+|+.++|++++|+.+|+++|+++++|+++++.++++.++++|.++|+|+|+|+|.|+++.+.+++|+
T Consensus 130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i 209 (407)
T 1qs0_A 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eCCCccChhHHHHHHH----hccchhh
Q 029082 172 FGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 172 ~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
+|||++++|.|||+++ |+||++-
T Consensus 210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~ 236 (407)
T 1qs0_A 210 IGDGATAESDFHTALTFAHVYRAPVIL 236 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEE
T ss_pred ECCchhhcChHHHHHHHHHHHCcCEEE
Confidence 9999999999999974 9999653
No 3
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=8.9e-43 Score=311.80 Aligned_cols=164 Identities=25% Similarity=0.366 Sum_probs=156.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccccCCCchhHHHHHHHhhccCCCeeecCCCchHHHHhcCCCH
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~i-g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~rG~~~ 107 (199)
..+++++|+++++||.|+++|.||+++.+++|||++ ||+|++.||||++||+..+|+++||++++||+|++++++|+|+
T Consensus 27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~ 106 (365)
T 2ozl_A 27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 106 (365)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence 346789999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHHH
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFLI 187 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal~ 187 (199)
.++|+|++|+.+|+++|+++++|+++ .++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||++++|.|||+||
T Consensus 107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn 184 (365)
T 2ozl_A 107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 184 (365)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence 99999999999999999999999865 4899999999999999999999999999999999999999999999999985
Q ss_pred ----hccchhh
Q 029082 188 ----HQLVIRE 194 (199)
Q Consensus 188 ----~~lP~~~ 194 (199)
|+||++-
T Consensus 185 ~A~~~~lpvi~ 195 (365)
T 2ozl_A 185 MAALWKLPCIF 195 (365)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHHCcCEEE
Confidence 9999764
No 4
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=6.1e-42 Score=306.61 Aligned_cols=178 Identities=30% Similarity=0.480 Sum_probs=165.3
Q ss_pred CCCCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCCC
Q 029082 9 EERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDD 88 (199)
Q Consensus 9 ~~~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~D 88 (199)
...+|++||||+||+++++...+++++|+++++||.|+++|.||+++.++++||++||||++.||||++||++.+|+++|
T Consensus 17 ~~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D 96 (368)
T 1w85_A 17 AEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKED 96 (368)
T ss_dssp HHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTC
T ss_pred CCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcC
Confidence 35678999999999998765567899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEE
Q 029082 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (199)
Q Consensus 89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vv 168 (199)
|++++||+|++++++|.++.++|++++|+.+ |++ +| ++.++++.++++|.++|.|+|+|+|.|+++.+.++
T Consensus 97 ~v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~~--~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~v 167 (368)
T 1w85_A 97 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GNQ--IP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVA 167 (368)
T ss_dssp EEECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GGC--CC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCE
T ss_pred EEEecchhHHHHHhcCCCHHHHHHHHCCCCC----CCC--CC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeE
Confidence 9999999999999999999999999999975 333 45 56789999999999999999999999999999999
Q ss_pred EEEeCCCccChhHHHHHHH----hccchhhh
Q 029082 169 VTYFGDGGTSEEVSFLFLI----HQLVIREI 195 (199)
Q Consensus 169 v~~~GDGatseG~f~Eal~----~~lP~~~~ 195 (199)
+|++|||++++|.|||+++ |+||++-+
T Consensus 168 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v 198 (368)
T 1w85_A 168 ITYTGDGGTSQGDFYEGINFAGAFKAPAIFV 198 (368)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEchhhhhhcHHHHHHHHHHHHCcCEEEE
Confidence 9999999999999999976 99997643
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=1.2e-40 Score=297.61 Aligned_cols=185 Identities=34% Similarity=0.484 Sum_probs=176.2
Q ss_pred CCCCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhccCC-
Q 029082 9 EERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND- 87 (199)
Q Consensus 9 ~~~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~~~- 87 (199)
+..+|++||||+||+++++ ..+++++++++++|+.|+.+|.||+++..++++|++|+++++.|||+++++...+++++
T Consensus 10 ~~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~r 88 (367)
T 1umd_A 10 TFTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGF 88 (367)
T ss_dssp SSCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTT
T ss_pred CCCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCC
Confidence 4677899999999999877 46789999999999999999999999999999999999999999999999999999998
Q ss_pred CeeecCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCE
Q 029082 88 DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDAC 167 (199)
Q Consensus 88 D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~v 167 (199)
|+++++||+|++++.+|.++.++|.+++|+.+|+++|+++++|+++++.++++.++++|+++|+|+|+|+|.|+++.+.+
T Consensus 89 D~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~ 168 (367)
T 1umd_A 89 DWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQV 168 (367)
T ss_dssp SEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCC
T ss_pred cEEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCe
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEeCCCccChhHHHHHHH----hccchhh
Q 029082 168 AVTYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 168 vv~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
++|++|||++++|.+|||++ |+||++-
T Consensus 169 vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~ 199 (367)
T 1umd_A 169 AVCTFGDGATSEGDWYAGINFAAVQGAPAVF 199 (367)
T ss_dssp EEEEEETGGGGSHHHHHHHHHHHHTTCSEEE
T ss_pred EEEEEcccccccCcHHHHHHHHHHhCcCEEE
Confidence 99999999999999999874 8999654
No 6
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=99.97 E-value=1.4e-31 Score=262.32 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=151.1
Q ss_pred CCCceeeeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-
Q 029082 11 RIPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK- 85 (199)
Q Consensus 11 ~~~~~~~l~~~G~-~~~~~---~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~- 85 (199)
.+++++++|++++ ++.+. ..+++++|+++++||.|+++|.||+++.+++++|+. ++..|||++++|+..+++
T Consensus 169 g~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~ 245 (933)
T 2jgd_A 169 GAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRH 245 (933)
T ss_dssp EEECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHH
T ss_pred cceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHH
Confidence 3467889999987 33221 146799999999999999999999999999999872 457899999999776665
Q ss_pred -----CCCeeec-CCCchHHHHh--cCCCHHHHHHHhhcCCCCCCCCCCCCcccCCCCCc----------cccccccccc
Q 029082 86 -----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN----------YFTVSSTIAT 147 (199)
Q Consensus 86 -----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~----------~~~~~~~vG~ 147 (199)
++||+++ +||+|+.+|+ +|+|+.++|+|++|+.+++++|+++++|++....+ +.+.+|++|+
T Consensus 246 a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~ 325 (933)
T 2jgd_A 246 AGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEI 325 (933)
T ss_dssp HHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTC
T ss_pred HhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCccccc
Confidence 6999995 8999999999 99999999999999998888888999998765432 4588899999
Q ss_pred cchhhhHHHHHHHhCC-----CCCEEEEEeCCCcc-ChhHHHHHHH----hccc
Q 029082 148 QLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEEVSFLFLI----HQLV 191 (199)
Q Consensus 148 q~~~A~G~A~A~k~~g-----~~~vvv~~~GDGat-seG~f~Eal~----~~lP 191 (199)
++|+|+|+|+|.|+++ .+.+++|++|||++ +||.|||||| |+||
T Consensus 326 ~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp 379 (933)
T 2jgd_A 326 VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYE 379 (933)
T ss_dssp HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTC
T ss_pred ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCC
Confidence 9999999999999984 78899999999997 9999999986 8899
No 7
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.96 E-value=1.6e-30 Score=253.60 Aligned_cols=175 Identities=14% Similarity=0.097 Sum_probs=141.6
Q ss_pred CceeeeCCCCC-CC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--
Q 029082 13 PCYRVLDDDGQ-PF----PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-- 85 (199)
Q Consensus 13 ~~~~~l~~~G~-~~----~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-- 85 (199)
++.+++|++++ ++ +... +++|+|+++++||.|+++|.||+++.+++++|+. ++..||||+++|+..+|+
T Consensus 91 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~~~ 166 (868)
T 2yic_A 91 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC 166 (868)
T ss_dssp ECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence 45667777766 22 1122 6799999999999999999999999999998885 334999999999987754
Q ss_pred ----CCCeeec-CCCchHHHHh--cCCCHHHHHHHhhcCCCCC-C-CCCCCCcccCCCC------------Ccccccccc
Q 029082 86 ----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST 144 (199)
Q Consensus 86 ----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~~~ 144 (199)
++|++++ +||+|+++|+ +|+|+.++|+|++|+.+++ + .|+++++|++... .++.+++|+
T Consensus 167 ~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 246 (868)
T 2yic_A 167 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 246 (868)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 8999997 8999999999 9999999999999999887 4 4677789986532 356788999
Q ss_pred ccccchhhhHHHHHHHhCC----------CCCEEEEEeCCCc-cChhHHHHHHH----hccc
Q 029082 145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEEVSFLFLI----HQLV 191 (199)
Q Consensus 145 vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDGa-tseG~f~Eal~----~~lP 191 (199)
+|+++|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||||+| |+||
T Consensus 247 Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp 308 (868)
T 2yic_A 247 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 308 (868)
T ss_dssp TTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTC
T ss_pred ccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCC
Confidence 9999999999999999865 6789999999999 59999999986 8898
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.96 E-value=5.5e-30 Score=254.94 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=140.3
Q ss_pred CceeeeCCCCC-CCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhc---
Q 029082 13 PCYRVLDDDGQ-PFP----DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI--- 84 (199)
Q Consensus 13 ~~~~~l~~~G~-~~~----~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al--- 84 (199)
++..+.|++++ ++. ... +++|+|+++++||.|+++|.||+++.+++++|+. ++..||||+++|+..+|
T Consensus 336 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~---~g~~GqEa~~~g~~~~l~~~ 411 (1113)
T 2xt6_A 336 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC 411 (1113)
T ss_dssp ECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence 45566777765 221 112 6799999999999999999999999999998885 23399999999997775
Q ss_pred ---cCCCeeec-CCCchHHHHh--cCCCHHHHHHHhhcCCCCC-C-CCCCCCcccCCCC------------Ccccccccc
Q 029082 85 ---KNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST 144 (199)
Q Consensus 85 ---~~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~~~ 144 (199)
+++|++++ +||+|+++|+ +|+|+.++|+|++|+.+++ + .|+++++|++... .++.+++|+
T Consensus 412 ~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 491 (1113)
T 2xt6_A 412 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 491 (1113)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 47999997 8999999999 9999999999999999887 4 4677789986532 356788999
Q ss_pred ccccchhhhHHHHHHHhCC----------CCCEEEEEeCCCc-cChhHHHHHHH----hccc
Q 029082 145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEEVSFLFLI----HQLV 191 (199)
Q Consensus 145 vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDGa-tseG~f~Eal~----~~lP 191 (199)
+|+++|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||||+| |+||
T Consensus 492 Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp 553 (1113)
T 2xt6_A 492 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 553 (1113)
T ss_dssp TTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTC
T ss_pred ccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCC
Confidence 9999999999999999876 6789999999999 69999999986 8998
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.77 E-value=2.3e-19 Score=169.33 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=120.9
Q ss_pred CceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeee
Q 029082 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (199)
Q Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~ 91 (199)
|.+.+|+ ++..+.+.++++.+++.++|+.| |.+..++.. + ..|.++++.|+|++.+++..+++ |+|+++
T Consensus 6 ~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v 75 (621)
T 2o1s_A 6 AKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLI 75 (621)
T ss_dssp TTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEE
T ss_pred CCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEE
Confidence 4445565 34334445688999999999998 766655552 2 24788899999999999999999 899999
Q ss_pred --cCCCchHHHHhcCCCHHHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCCCCCEE
Q 029082 92 --PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (199)
Q Consensus 92 --~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vv 168 (199)
+.||++++.+.+|. .+++ .. +-+. .|. +.|... ...+.+..++++|.++|.|+|+|+|.|+++.++.|
T Consensus 76 ~~~gH~~y~~~~l~G~-~~~~-~~-~r~~----~g~--~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~V 146 (621)
T 2o1s_A 76 WDVGHQAYPHKILTGR-RDKI-GT-IRQK----GGL--HPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRT 146 (621)
T ss_dssp ESSSTTCHHHHHTTTT-GGGG-GG-TTST----TSC--CSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCE
T ss_pred EeCchHHHHHHHHhCC-Hhhh-hc-cccc----CCC--CCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeE
Confidence 77999999999997 2221 11 1111 111 112211 11233445899999999999999999999999999
Q ss_pred EEEeCCCccChhHHHHHHH----hccchhh
Q 029082 169 VTYFGDGGTSEEVSFLFLI----HQLVIRE 194 (199)
Q Consensus 169 v~~~GDGatseG~f~Eal~----~~lP~~~ 194 (199)
+|++|||++++|.+||+++ +++|++-
T Consensus 147 v~v~GDG~~~~G~~~EaL~~A~~~~~pli~ 176 (621)
T 2o1s_A 147 VCVIGDGAITAGMAFEAMNHAGDIRPDMLV 176 (621)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCCSEEE
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999985 7889763
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.68 E-value=7e-18 Score=159.51 Aligned_cols=149 Identities=13% Similarity=0.065 Sum_probs=111.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc-CCCeeecCCCchH---HHHhcC
Q 029082 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWRG 104 (199)
Q Consensus 29 ~~~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~-~~D~~~~~yR~~~---~~l~rG 104 (199)
+.++++.+++.++|+.| |.+...+.. + ..|.++++.|+-.+.+++...++ |+|+++.+ |+|+ +.+.+|
T Consensus 21 d~~~l~~~~l~~l~~~i---R~~~~~~~~---~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~G 92 (629)
T 2o1x_A 21 DLKRLSREQLPALTEEL---RGEIVRVCS---R-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILTG 92 (629)
T ss_dssp HHTTSCGGGHHHHHHHH---HHHHHHHHT---T-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTTT
T ss_pred hhhhCCHHHHHHHHHHH---HHHHHHHHH---h-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHhC
Confidence 45678999999999999 655444432 2 34788888888444444434448 89999999 9996 566677
Q ss_pred C-CHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHH
Q 029082 105 F-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSF 183 (199)
Q Consensus 105 ~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~ 183 (199)
. +....++++.|. +|+++++. + .++...++++|.++|.|+|+|+|.|+++.++.|+|++|||++++|.+|
T Consensus 93 ~~~~~~~~r~~~g~-~G~p~~~~-s-------~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~ 163 (629)
T 2o1x_A 93 RRDQMADIKKEGGI-SGFTKVSE-S-------EHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMAL 163 (629)
T ss_dssp TGGGGGGTTSTTSC-CSSCCGGG-C-------TTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHH
T ss_pred cHhHHhCcccCCCC-CCCCCCCC-C-------CCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHH
Confidence 6 444455665553 34444332 2 245678899999999999999999999999999999999999999999
Q ss_pred HHHH----hccchhh
Q 029082 184 LFLI----HQLVIRE 194 (199)
Q Consensus 184 Eal~----~~lP~~~ 194 (199)
|+|+ |++|++-
T Consensus 164 EaL~~A~~~~~pli~ 178 (629)
T 2o1x_A 164 AALNTIGDMGRKMLI 178 (629)
T ss_dssp HHHHHHHHHCCSEEE
T ss_pred HHHHHHHhhCCCEEE
Confidence 9985 7899754
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.26 E-value=9.9e-12 Score=119.07 Aligned_cols=139 Identities=16% Similarity=0.139 Sum_probs=100.9
Q ss_pred HHH-HHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHH------HHhcC--
Q 029082 43 NDM-VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRG-- 104 (199)
Q Consensus 43 r~M-~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~------~l~rG-- 104 (199)
+.. ..+|.+-..+......|++|...++. |.+.+.....|+ | .|.++.+ .+|+. ....|
T Consensus 24 ~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~ 100 (700)
T 3rim_A 24 SAAVDTIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLS-AGHSSLTLYIQLYLGGFG 100 (700)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-STTCHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEC-CCchhHHHHHHHHHhCCC
Confidence 344 36787777777777778888776666 777665555775 3 5887765 45553 33456
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhC-------------CCCCEEEE
Q 029082 105 FSMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMD-------------RKDACAVT 170 (199)
Q Consensus 105 ~~~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~-------------g~~~vvv~ 170 (199)
++.+++ .. |-+. |...|.|.. ....++...++++|.++++|+|+|+|.|++ +.+++++|
T Consensus 101 ~~~~~l-~~-fr~~-----gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~ 173 (700)
T 3rim_A 101 LELSDI-ES-LRTW-----GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYV 173 (700)
T ss_dssp CCHHHH-TT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEE
T ss_pred CCHHHH-HH-hhcC-----CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEE
Confidence 455553 33 3332 333456654 234688899999999999999999999984 57889999
Q ss_pred EeCCCccChhHHHHHHH----hccc
Q 029082 171 YFGDGGTSEEVSFLFLI----HQLV 191 (199)
Q Consensus 171 ~~GDGatseG~f~Eal~----~~lP 191 (199)
++|||+++||.+|||++ |+||
T Consensus 174 ~~GDG~l~eG~~~EAl~~A~~~~L~ 198 (700)
T 3rim_A 174 IASDGDIEEGVTSEASSLAAVQQLG 198 (700)
T ss_dssp EEEHHHHHSHHHHHHHHHHHHTTCT
T ss_pred EECCcccccChHHHHHHHHHHcCCC
Confidence 99999999999999975 8898
No 12
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.24 E-value=4.1e-11 Score=113.24 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=108.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHHH-
Q 029082 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGVL- 100 (199)
Q Consensus 31 ~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~~- 100 (199)
.++++..+.++-+....+|.+-..+......|++|.-.++. |...+.....|+ | .|.++.+ -+|+..
T Consensus 3 ~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~ 79 (616)
T 3mos_A 3 HKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLS-KGHAAPI 79 (616)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEES-SGGGHHH
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEc-CccHHHH
Confidence 35677777777777888998888887777778888776776 766655545553 2 5887766 566642
Q ss_pred -----HhcCC-CHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCC-CCEEEEEeC
Q 029082 101 -----LWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFG 173 (199)
Q Consensus 101 -----l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~-~~vvv~~~G 173 (199)
...|. +.++ |.. |-+ .|...+.|......++...++++|.++|.|+|+|+|.|+.+. ++.|+|++|
T Consensus 80 ly~~~~l~G~~~~~~-l~~-~r~-----~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~G 152 (616)
T 3mos_A 80 LYAVWAEAGFLAEAE-LLN-LRK-----ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLG 152 (616)
T ss_dssp HHHHHHHTTSSCGGG-GGG-TTC-----TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEE
T ss_pred HHHHHHHcCCCCHHH-HHH-hcc-----CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 23454 3333 222 222 233455565433455666889999999999999999997666 589999999
Q ss_pred CCccChhHHHHHHH----hccchh
Q 029082 174 DGGTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 174 DGatseG~f~Eal~----~~lP~~ 193 (199)
||+.++|.+||+++ ++||.+
T Consensus 153 DG~~~eG~~~Eal~~A~~~~l~~l 176 (616)
T 3mos_A 153 DGELSEGSVWEAMAFASIYKLDNL 176 (616)
T ss_dssp TGGGGSHHHHHHHHHHHHTTCTTE
T ss_pred ccccccCcHHHHHHHHHHcCCCcE
Confidence 99999999999985 889854
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.21 E-value=2.6e-11 Score=115.66 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc--C-------CCeeecCCCchHH------HHhcCC--C
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF--S 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~--~-------~D~~~~~yR~~~~------~l~rG~--~ 106 (199)
....+|.+-..+......|++|...++. |...+.....|+ | .|.++.+ .+|+. ....|. +
T Consensus 9 ~a~~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~ 85 (673)
T 1r9j_A 9 VANCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLT 85 (673)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEc-cccHHHHHHHHHHHcCCCCC
Confidence 3566777777777777789998777777 777766655564 2 2776655 46663 233465 3
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccCC-CCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDG 175 (199)
.+++ .. |.+. |...+.|... ...++...++++|.++|.|+|+|+|.|+++ .+..|+|++|||
T Consensus 86 ~~~l-~~-~r~~-----~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG 158 (673)
T 1r9j_A 86 MDDL-KG-FRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDG 158 (673)
T ss_dssp HHHH-HT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHHH-Hh-hccC-----CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcc
Confidence 4443 33 3332 3334556543 245888999999999999999999999765 688999999999
Q ss_pred ccChhHHHHHHH----hccchh
Q 029082 176 GTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 176 atseG~f~Eal~----~~lP~~ 193 (199)
+++||.+|||++ ++||.+
T Consensus 159 ~~~eG~~~Eal~~A~~~~L~~l 180 (673)
T 1r9j_A 159 CLMEGVCQEALSLAGHLALEKL 180 (673)
T ss_dssp HHHSHHHHHHHHHHHHHTCTTE
T ss_pred hhcccHHHHHHHHHHHhCCCcE
Confidence 999999999974 889843
No 14
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.15 E-value=8.7e-11 Score=112.02 Aligned_cols=150 Identities=18% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH--
Q 029082 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV-- 99 (199)
Q Consensus 31 ~~~~~e~l~~lyr~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~-- 99 (199)
..++.++|.+ ....+|.+-..+......|++|...+.. |...+.....|+ +.|.++.+ .+|+.
T Consensus 9 ~~l~~~~l~~---~a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEK---SVNTIRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLS-AGHGCML 82 (675)
T ss_dssp -CCCHHHHHH---HHHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHH
T ss_pred CCCCHHHHHH---HHHHHHHHHHHHHHHcCCCccCccHhHH--HHHHHHHHHHhcCCcCCCCCCCCCeEEEc-CcchHHH
Confidence 4678888775 4677888877777777788887665555 555444433343 23776655 46664
Q ss_pred ----HHhcCC---CHHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCC--------
Q 029082 100 ----LLWRGF---SMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------- 163 (199)
Q Consensus 100 ----~l~rG~---~~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g-------- 163 (199)
....|. +.++ |.. |-+. |...|.|.. ....++...++++|.++|.|+|+|+|.|+++
T Consensus 83 lYa~l~l~G~~~~~~~~-l~~-~r~~-----~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~ 155 (675)
T 1itz_A 83 QYALLHLAGYDSVKEED-LKQ-FRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155 (675)
T ss_dssp HHHHHHHHTCTTCCHHH-HTT-TTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHcCCCCCCHHH-HHh-cccC-----CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhccccccccc
Confidence 233454 3343 222 3222 222244543 2345788999999999999999999999876
Q ss_pred --CCCEEEEEeCCCccChhHHHHHHH----hccchh
Q 029082 164 --KDACAVTYFGDGGTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 164 --~~~vvv~~~GDGatseG~f~Eal~----~~lP~~ 193 (199)
.+..|+|++|||++++|.+||+++ ++||.+
T Consensus 156 ~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~l 191 (675)
T 1itz_A 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKL 191 (675)
T ss_dssp CCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred CCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcE
Confidence 688999999999999999999985 788643
No 15
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.14 E-value=3.5e-11 Score=114.67 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC--CH
Q 029082 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 45 M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
...+|.+-..+......|++|...++. |...+.....|+ +.|.++.+ .+|+. ....|. +.
T Consensus 10 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~ 86 (663)
T 3kom_A 10 SNAIRFLSIDATLKAKSGHPGMPMGMA--DIATVLWTKFLKHNPNNPHWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSI 86 (663)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEEC-SSSCHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHH--HHHHHHHhhheeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCH
Confidence 445677666666666678776555554 555444444553 35887765 45553 233564 45
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCCc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDGa 176 (199)
++ |.. |-+. |...+.|.. +...++...++++|.++|.|+|+|+|.|+++. ++.|+|++|||+
T Consensus 87 ~~-l~~-~r~~-----~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~ 159 (663)
T 3kom_A 87 ED-IKN-FRQL-----HSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGC 159 (663)
T ss_dssp HH-HTT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHH
T ss_pred HH-HHh-hccC-----CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchh
Confidence 54 332 3332 222245642 23457888999999999999999999998764 789999999999
Q ss_pred cChhHHHHHHH----hccchh
Q 029082 177 TSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 177 tseG~f~Eal~----~~lP~~ 193 (199)
.++|.+|||++ ++||.+
T Consensus 160 l~eG~~~Eal~~A~~~~L~~l 180 (663)
T 3kom_A 160 LMEGVSHEACSLAGTLGLNKL 180 (663)
T ss_dssp HHSHHHHHHHHHHHHHTCTTE
T ss_pred hhhchHHHHHHHHHHhCCCeE
Confidence 99999999974 889854
No 16
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.14 E-value=6e-11 Score=113.22 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHh-hccC-------CCeeecCCCchHH------HHhcCC--CH
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA-AIKN-------DDFVVPQYREPGV------LLWRGF--SM 107 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~-al~~-------~D~~~~~yR~~~~------~l~rG~--~~ 107 (199)
....+|.+-..+......|++|...+.. |...+.... ..+| .|.++.+ -+|+. ....|. +.
T Consensus 11 ~a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~ 87 (680)
T 1gpu_A 11 AVSTIRILAVDTVSKANSGHPGAPLGMA--PAAHVLWSQMRMNPTNPDWINRDRFVLS-NGHAVALLYSMLHLTGYDLSI 87 (680)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHhCCCCccCCCCCCCCEEEEe-cchHHHHHHHHHHHhCCCCCH
Confidence 3567788777777776788887655555 555444333 2333 5777666 46664 233454 44
Q ss_pred HHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCCcc
Q 029082 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT 177 (199)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDGat 177 (199)
+++ .. |-+. |...|.|......++...++++|.++|.|+|+|+|.|+++ .+..|+|++|||++
T Consensus 88 ~~l-~~-~r~~-----g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~ 160 (680)
T 1gpu_A 88 EDL-KQ-FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCL 160 (680)
T ss_dssp HHH-TT-TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHH
T ss_pred HHH-Hh-hccc-----CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCcc
Confidence 443 22 3332 2333567654667899999999999999999999999765 47899999999999
Q ss_pred ChhHHHHHHH----hccchh
Q 029082 178 SEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 178 seG~f~Eal~----~~lP~~ 193 (199)
+||.+||+++ ++||.+
T Consensus 161 ~eG~~~Eal~~A~~~~L~~l 180 (680)
T 1gpu_A 161 QEGISSEASSLAGHLKLGNL 180 (680)
T ss_dssp HSHHHHHHHHHHHHTTCTTE
T ss_pred chhhHHHHHHHHHHhCCCcE
Confidence 9999999975 889844
No 17
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.11 E-value=1.1e-10 Score=112.04 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC--C
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--S 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~--~ 106 (199)
....+|.+-..+......|++|...++. |...+.....|+ +.|.++.+ .+|+. ....|. +
T Consensus 48 ~a~~iR~~~i~~v~~a~~GH~g~~l~~a--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 48 MANAIRALAMDAVQQANSGHPGMPMGMA--EIGVALWSRHLKHNPTNPHWADRDRFVLS-NGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHHTCCCCTTCTTCTTCCEEEEC-SGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccCchHHHH--HHHHHHHhhhEeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCC
Confidence 3556777777776666778887666666 666555444554 35887766 56664 333565 4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDG 175 (199)
.++ |.. |-+.++ ..+.|.- +...++...++++|.++|.|+|+|+|.|+++. ++.|+|++|||
T Consensus 125 ~~~-l~~-~r~~~s-----~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG 197 (711)
T 3uk1_A 125 IEE-LKN-FRQLHS-----KTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDG 197 (711)
T ss_dssp HHH-HHT-TTSTTC-----SCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHH-HHh-hccccC-----CCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCc
Confidence 555 333 333322 2244652 23467888999999999999999999998764 78999999999
Q ss_pred ccChhHHHHHHH----hccchh
Q 029082 176 GTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 176 atseG~f~Eal~----~~lP~~ 193 (199)
+.++|.+||+++ ++||.+
T Consensus 198 ~l~eG~~~Eal~~A~~~~L~~l 219 (711)
T 3uk1_A 198 CLMEGISHEACSLAGTLKLNKL 219 (711)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTE
T ss_pred chhhccHHHHHHHHHHhCCCcE
Confidence 999999999974 889844
No 18
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.10 E-value=2.1e-10 Score=112.42 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHH------cCCcccccCCCchhHHHHHHHhhcc------CCCeeecCCCchHH------HHhcCC
Q 029082 44 DMVTLQTMDTIFYEAQR------QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRGF 105 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~r------qG~ig~~~~~~GqEa~~vg~~~al~------~~D~~~~~yR~~~~------~l~rG~ 105 (199)
....+|.+-..+..... .|+++.+.+.. |...++....++ ++|+++.. +|+. .+..|.
T Consensus 81 la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~--GH~sp~~Ya~~~l~Gr 156 (886)
T 2qtc_A 81 IRSAIRWNAIMTVLRASKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGR 156 (886)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEc--chhHHHHHHHHHHhCC
Confidence 35566777666655534 58888777777 888777767677 57877666 6664 556675
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcccCCC-CC-ccccccccccccchhhhHHHHHHHh-------CCCCCEEEEEeCCCc
Q 029082 106 SMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGG 176 (199)
Q Consensus 106 ~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~-~~~~~~~~vG~q~~~A~G~A~A~k~-------~g~~~vvv~~~GDGa 176 (199)
-..+-|.. |-+.. .+.+.|.|...+ .. ++...++++|.+++.|+|+|+|.|+ ++.++.|+|++|||+
T Consensus 157 ~~~e~l~~-fRq~~---~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~ 232 (886)
T 2qtc_A 157 LTQEQLDN-FRQEV---HGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGE 232 (886)
T ss_dssp SCHHHHTT-BTCCT---TSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGG
T ss_pred CCHHHHHh-ccCCC---CCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCcc
Confidence 43333443 32221 122333332211 12 3777899999999999999999998 888999999999999
Q ss_pred cChhHHHHHHH----hccc
Q 029082 177 TSEEVSFLFLI----HQLV 191 (199)
Q Consensus 177 tseG~f~Eal~----~~lP 191 (199)
+++|.+|||+| ++||
T Consensus 233 l~eG~~~EAl~~A~~~~L~ 251 (886)
T 2qtc_A 233 MDEPESKGAITIATREKLD 251 (886)
T ss_dssp GGSHHHHTTHHHHHHTTCT
T ss_pred ccccchHHHHHHHHHcCCC
Confidence 99999999986 6776
No 19
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.08 E-value=1.7e-10 Score=109.93 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhc--cC-------CCeeecCCCchHH------HHhcCC--C
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI--KN-------DDFVVPQYREPGV------LLWRGF--S 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al--~~-------~D~~~~~yR~~~~------~l~rG~--~ 106 (199)
....+|.+-..+......|++|...+.. |...+.....| +| .|.++.+ .+|+. ....|. +
T Consensus 7 ~a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 7 LANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHHhhcCCcCCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCC
Confidence 3556777777777766788887655554 55544433434 33 4776555 46664 233454 4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDG 175 (199)
.+++ .. |-+. |...|.|.. ....++...++++|.++|.|+|+|+|.++++ .+..|+|++|||
T Consensus 84 ~~~l-~~-~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG 156 (669)
T 2r8o_A 84 MEEL-KN-FRQL-----HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDG 156 (669)
T ss_dssp HHHH-TT-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHHH-HH-hhcC-----CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHh
Confidence 5443 22 3332 222244653 2346899999999999999999999999765 478999999999
Q ss_pred ccChhHHHHHHH----hccchh
Q 029082 176 GTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 176 atseG~f~Eal~----~~lP~~ 193 (199)
++++|.+|||++ ++||.+
T Consensus 157 ~~~eG~~~Eal~~A~~~~L~~l 178 (669)
T 2r8o_A 157 CMMEGISHEVCSLAGTLKLGKL 178 (669)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTE
T ss_pred HhcchHHHHHHHHHHHcCCCcE
Confidence 999999999975 888844
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.07 E-value=1.1e-10 Score=110.84 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC--
Q 029082 43 NDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF-- 105 (199)
Q Consensus 43 r~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~-- 105 (199)
+....+|.+-..+......|++|...+.. |...+. ...|+ +.|.++.+ -+|+. ....|.
T Consensus 8 ~~a~~iR~~~i~~v~~a~~GH~g~~lg~~--ei~~~L-~~~~~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~ 83 (632)
T 3l84_A 8 EQANTLRFLSADMVQKANSGHPGAPLGLA--DILSVL-SYHLKHNPKNPTWLNRDRLVFS-GGHASALLYSFLHLSGYDL 83 (632)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHH-TTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcChhHH--HHHHHH-HHHhCcCCCCCCCCCCCEEEEc-CCcccHHHHHHHHHhCCCC
Confidence 34567777777776666677776554444 555443 45564 46887766 45653 333454
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCcccCCCCCccccccccccccchhhhHHHHHHHhCCC-------CCEEEEEeCCCccC
Q 029082 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTS 178 (199)
Q Consensus 106 ~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~-------~~vvv~~~GDGats 178 (199)
+.+++ .. |-+. |.-.+.|......++...++++|.++|.|+|+|+|.|+++. ++.|+|++|||+.+
T Consensus 84 ~~~~l-~~-~r~~-----~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~ 156 (632)
T 3l84_A 84 SLEDL-KN-FRQL-----HSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQ 156 (632)
T ss_dssp CHHHH-TT-TTCT-----TCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHH
T ss_pred CHHHH-HH-HhcC-----CCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchh
Confidence 45553 33 3332 22223455335568888999999999999999999998764 88999999999999
Q ss_pred hhHHHHHHH----hccchh
Q 029082 179 EEVSFLFLI----HQLVIR 193 (199)
Q Consensus 179 eG~f~Eal~----~~lP~~ 193 (199)
+|.+||+++ ++||.+
T Consensus 157 eG~~~Eal~~A~~~~L~~l 175 (632)
T 3l84_A 157 EGISYEACSLAGLHKLDNF 175 (632)
T ss_dssp SHHHHHHHHHHHHTTCTTE
T ss_pred hccHHHHHHHHHHcCCCcE
Confidence 999999975 788844
No 21
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.05 E-value=2.1e-10 Score=108.99 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcCC--C
Q 029082 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--S 106 (199)
Q Consensus 44 ~M~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG~--~ 106 (199)
....+|.+-..+......|++|...+.. |...+.....|+ +.|.++.+ .+|+. ....|. +
T Consensus 11 ~a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~ 87 (651)
T 2e6k_A 11 SVNAIRFLAIDAVEKARSGHPGMPMGMA--PLAYLLFREVMRHNPLDPDWPDRDRFVLS-AGHGSMLLYAVLHLTGYDLP 87 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCccCcchhHH--HHHHHHHHHHhcCCccCCCCCCCCeEEEe-CcchhHHHHHHHHHhCCCCC
Confidence 3556777776677666778877655444 544433332243 23776655 45663 233455 3
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCC----------CCCEEEEEeCCC
Q 029082 107 MQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDG 175 (199)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g----------~~~vvv~~~GDG 175 (199)
.++ |.. |-+. |.-.+.|.. ....++...++++|.++|.|+|+|+|.|+++ .+..|+|++|||
T Consensus 88 ~~~-l~~-~r~~-----~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG 160 (651)
T 2e6k_A 88 LEE-LKS-FRQW-----GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDG 160 (651)
T ss_dssp HHH-HTT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHH
T ss_pred HHH-HHH-hhcc-----CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChh
Confidence 444 322 3222 111234543 2235889999999999999999999999765 688999999999
Q ss_pred ccChhHHHHHHH----hccchh
Q 029082 176 GTSEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 176 atseG~f~Eal~----~~lP~~ 193 (199)
++++|.+||+++ ++||.+
T Consensus 161 ~~~eG~~~Eal~~A~~~~L~~l 182 (651)
T 2e6k_A 161 DLMEGVSGEAASLAGHWGLSKL 182 (651)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTE
T ss_pred hhchhHHHHHHHHHHHcCCCeE
Confidence 999999999975 889844
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.02 E-value=2.6e-10 Score=109.16 Aligned_cols=138 Identities=22% Similarity=0.193 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCCCchhHHHHHHHhhcc---------CCCeeecCCCchHH------HHhcC--CCHH
Q 029082 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRG--FSMQ 108 (199)
Q Consensus 46 ~~~R~~d~~~~~l~rqG~ig~~~~~~GqEa~~vg~~~al~---------~~D~~~~~yR~~~~------~l~rG--~~~~ 108 (199)
..+|.+-..+......|++|.-.++. |.+.+.....|+ +.|.++.+ .+|+. ....| ++.+
T Consensus 35 ~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~~ 111 (690)
T 3m49_A 35 NTIRTLSIDAIEKANSGHPGMPMGAA--PMAYTLWTQFMKHNPNNPTWFNRDRFVLS-AGHGSMLLYSLLHLSGYDVTMD 111 (690)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcchHHH--HHHHHHHHHHhcCCCCCCCCCCCCeEEEC-CccHHHHHHHHHHHHCCCCCHH
Confidence 36777777776666678876555555 555554445665 46877766 46663 23346 4556
Q ss_pred HHHHHhhcCCCCCCCCCCCCcccC-CCCCccccccccccccchhhhHHHHHHHhCCC----------CCEEEEEeCCCcc
Q 029082 109 EFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGT 177 (199)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~----------~~vvv~~~GDGat 177 (199)
++ .. |-+. |...|.|.. ....++...++++|.++|.|+|+|+|.|+++. ++.|+|++|||+.
T Consensus 112 ~l-~~-~rq~-----gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l 184 (690)
T 3m49_A 112 DL-KN-FRQW-----GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDL 184 (690)
T ss_dssp HH-TT-TTCT-----TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHH
T ss_pred HH-Hh-hccC-----CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhh
Confidence 53 22 3222 222344553 23567888999999999999999999997653 7899999999999
Q ss_pred ChhHHHHHHH----hccchh
Q 029082 178 SEEVSFLFLI----HQLVIR 193 (199)
Q Consensus 178 seG~f~Eal~----~~lP~~ 193 (199)
++|.+||+++ ++||.+
T Consensus 185 ~eG~~~Eal~~A~~~~L~~l 204 (690)
T 3m49_A 185 MEGVSAEASSLAAHLQLGRL 204 (690)
T ss_dssp HSHHHHHHHHHHHHTTCTTE
T ss_pred hhccHHHHHHHHHHhCCCeE
Confidence 9999999975 788854
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=97.37 E-value=0.00015 Score=70.69 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=51.0
Q ss_pred CCcccCCCCCccccccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhH---HHHHHHhc
Q 029082 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEV---SFLFLIHQ 189 (199)
Q Consensus 127 ~~~H~~~~~~~~~~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~---f~Eal~~~ 189 (199)
.|.|....-.++....+++|..+++|+|+|+ .+.+..|+|++|||..++|. .||+.++.
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~ 220 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLV 220 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSC
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhh
Confidence 6678754557899999999999999999994 56778999999999999999 99997654
No 24
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=97.26 E-value=6.8e-05 Score=69.19 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=45.6
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
...+.+|.++|.|+|+|+|.+.+++++.|+|++|||+...+ +++-+..++||++-+
T Consensus 410 ~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 467 (563)
T 2vk8_A 410 VLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLF 467 (563)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred cchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEE
Confidence 45689999999999999999998999999999999998753 233334589997643
No 25
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=96.75 E-value=0.00038 Score=64.27 Aligned_cols=53 Identities=19% Similarity=0.131 Sum_probs=41.4
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+|+|.| +.++.|+|++|||+...+ +++-+..++||++.+
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~iv 471 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYSIGEFDTLVRKQLPLIVI 471 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGGTTHHHHHHHHTCCCEEE
T ss_pred CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCCHHHHHHHHHhCCCeEEE
Confidence 35889999999999999987 567789999999998775 222223589997643
No 26
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=96.66 E-value=0.00025 Score=66.16 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=37.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH---HHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF---LIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea---l~~~lP~~~~ 195 (199)
..+++|.++|.|+|+++|. +++.|+|++|||+++.+ +.|- ..++||++-+
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~-~~~l~~a~~~~lp~~~v 470 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT-MQDLATQVQYHLPVINV 470 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEE
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh-HHHHHHHHHHCcCeEEE
Confidence 3577888888888888874 36789999999999887 3332 3489998643
No 27
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=96.51 E-value=0.00053 Score=63.00 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=40.0
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+... .+++-+..++||++-+
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~iv 458 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLTIQELGSMLRDKQHPIIL 458 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEE
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999953 567999999999844 3445555689997643
No 28
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=96.49 E-value=0.00054 Score=62.68 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHH----Hhccchhhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFL----IHQLVIREI 195 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal----~~~lP~~~~ 195 (199)
+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++| .++||++.+
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~iv 451 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFV 451 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEE
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEE
Confidence 899999999999999853 4569999999999776 4554 588997653
No 29
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=96.16 E-value=0.0015 Score=60.45 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=39.1
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++-+..++||++.+
T Consensus 418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~iv 470 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQSSMELETAVRLKANVLHL 470 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhccHHHHHHHHHhCCCcEEE
Confidence 45789999999999999953 6789999999998764 222334589997643
No 30
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=96.10 E-value=0.00084 Score=62.45 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=38.9
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHHH----Hhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLFL----IHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Eal----~~~lP~~~~ 195 (199)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++| .++||++-+
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~iv 463 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINV 463 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEE
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEE
Confidence 46899999999999999953 5679999999998775 3443 588997643
No 31
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=96.09 E-value=0.002 Score=60.03 Aligned_cols=51 Identities=14% Similarity=-0.012 Sum_probs=39.3
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIRE 194 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~ 194 (199)
+.++++|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++-+..++||++-
T Consensus 439 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~i 491 (616)
T 2pan_A 439 GQAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFLIEELAVGAQFNIPYIH 491 (616)
T ss_dssp TTTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEE
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCCHHHHHHHHHhCCCeEE
Confidence 446889999999999999953 6789999999997654 23333458899754
No 32
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=96.08 E-value=0.0017 Score=60.02 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=39.9
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHH---HHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFL---FLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~E---al~~~lP~~~~ 195 (199)
...+.+|.++|.|+|+|+|.+ ++.|+|++|||+...+ +.| +..++||++.+
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~-~~eL~ta~~~~l~~~iv 475 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT-VQELGLSIREKLNPICF 475 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEE
T ss_pred ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC-HHHHHHHHHcCCCCEEE
Confidence 456899999999999999953 6789999999998763 333 33589997643
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=96.07 E-value=0.0018 Score=60.12 Aligned_cols=51 Identities=25% Similarity=0.246 Sum_probs=39.1
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIRE 194 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~ 194 (199)
+..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++-+..++||++-
T Consensus 423 g~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~i 475 (590)
T 1ybh_A 423 GGLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMNVQELATIRVENLPVKV 475 (590)
T ss_dssp CSSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHTTTHHHHHHHTTCCEEE
T ss_pred CCcccccchHHHHHHHHHhCC----CCcEEEEEccchhhccHHHHHHHHHhCCCcEE
Confidence 345889999999999999853 5679999999998664 33333458999754
No 34
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=95.86 E-value=0.0024 Score=58.96 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=38.8
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHHH---HHhccchhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFLF---LIHQLVIRE 194 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~Ea---l~~~lP~~~ 194 (199)
+..+.+|.++|.|+|+|+|. .++.|+|++|||+.... +.|- ..++||++.
T Consensus 410 ~~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~-~~el~ta~~~~l~~~i 462 (568)
T 2wvg_A 410 MQWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT-AQEVAQMVRLKLPVII 462 (568)
T ss_dssp TTTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEE
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc-HHHHHHHHHcCCCcEE
Confidence 34678999999999999995 36789999999998663 3332 358899754
No 35
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=95.85 E-value=0.0026 Score=60.43 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=39.3
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
+..+++|.++|.|+|+|+|. .++.|+|++|||+.... +++-+..++||++.+
T Consensus 510 g~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~~~eL~ta~~~~l~v~iv 563 (677)
T 1t9b_A 510 GGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTLTELSSAVQAGTPVKIL 563 (677)
T ss_dssp CSSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHHGGGHHHHHHHTCCCEEE
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhccHHHHHHHHHhCCCeEEE
Confidence 34578999999999999984 46789999999998653 233334589997643
No 36
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=95.80 E-value=0.0029 Score=58.50 Aligned_cols=50 Identities=26% Similarity=0.225 Sum_probs=38.7
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIRE 194 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~ 194 (199)
..+++|.++|.|+|+|+|.+ ++.|+|++|||+...+ +++-+..++||++.
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~~~~L~~a~~~~l~~~i 485 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSNSSDLETIARLNLPIVT 485 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHTGGGHHHHHHHTCCCEE
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhHHHHHHHHHHhCCCeEE
Confidence 45889999999999999853 5679999999998665 33333458899754
No 37
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=95.78 E-value=0.0031 Score=58.09 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=39.6
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
+..+++|.++|.|+|+++| .++.|+|++|||+... .++.-+..++||++-+
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 470 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIV 470 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 4567899999999999998 4567999999999743 4455556799997643
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=95.71 E-value=0.0025 Score=58.78 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=38.3
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChhHHHH---HHHhccchhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEEVSFL---FLIHQLVIRE 194 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG~f~E---al~~~lP~~~ 194 (199)
..+.+|.++|.|+|+|+|. .++.|+|++|||+...+ +.| +..++||++-
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~-~~eL~ta~~~~l~~~i 458 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT-AQEVAQMVRYELPVII 458 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEE
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEE
Confidence 4678999999999999985 36789999999998764 333 2358899764
No 39
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=95.70 E-value=0.003 Score=58.26 Aligned_cols=51 Identities=14% Similarity=-0.016 Sum_probs=39.3
Q ss_pred cccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhhh
Q 029082 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIREI 195 (199)
Q Consensus 140 ~~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~~ 195 (199)
+..+++|.++|.|+|+++| .++.|+|++|||+... .+++-+..++||++-+
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 475 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVI 475 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 4557899999999999998 4567999999999753 3445556799997643
No 40
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=95.67 E-value=0.0035 Score=57.65 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=39.5
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~~ 195 (199)
..+.+|..+|.|+|+++|.+ ++.|+|++|||+. +-.+++.+..++||++-+
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 456 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIV 456 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 45788999999999998853 5679999999996 345666677799997643
No 41
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=95.62 E-value=0.0029 Score=58.72 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=38.3
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIREI 195 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~~ 195 (199)
.+++|.++|.|+|+|+|.+ ++.++|++|||+...+ +++-+..++||++.+
T Consensus 423 ~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~iv 474 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYHFNEFRVAVEHKLPVITM 474 (589)
T ss_dssp TCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEE
T ss_pred cchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhhHHHHHHHHHhCCCeEEE
Confidence 4889999999999999853 5679999999998765 222223588997643
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=95.52 E-value=0.0023 Score=59.15 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=37.4
Q ss_pred cccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccCh--hHHHHHHHhccchhh
Q 029082 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE--EVSFLFLIHQLVIRE 194 (199)
Q Consensus 142 ~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatse--G~f~Eal~~~lP~~~ 194 (199)
.+.+|.++|.|+|+|+|.+ ++.++|++|||+..- .+++-+..++||++-
T Consensus 421 ~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~i 471 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQMTGWELGNCRRLGIDPIV 471 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEE
T ss_pred cccccccchHHHHHHHhCC----CCcEEEEEechHHHhhHHHHHHHHHhCCCCEE
Confidence 5789999999999999953 567999999999862 234444457899764
No 43
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=95.43 E-value=0.0031 Score=58.15 Aligned_cols=48 Identities=17% Similarity=0.055 Sum_probs=36.5
Q ss_pred ccccccccchhhhHHHHHHHhCCCCCEEEEEeCCCcc--ChhHHHHHHHhccchhh
Q 029082 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT--SEEVSFLFLIHQLVIRE 194 (199)
Q Consensus 141 ~~~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGat--seG~f~Eal~~~lP~~~ 194 (199)
..++.|. +|.|+|+++| . ++.|+|++|||+. +-.+++-+..++||++-
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~~~~~eL~ta~~~~lpv~i 464 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSALYDLNALALLRQVSAPLVL 464 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHHHTGGGHHHHTTCSSCEEE
T ss_pred ccccccH-HHHHHHHHhc-C----CCcEEEEEccHHhhhcchhhHhhcccCCCcEE
Confidence 4455666 9999999998 2 5679999999997 34456666678999764
No 44
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=94.65 E-value=0.011 Score=55.08 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=36.1
Q ss_pred ccccccchhhhHHHHHHHhCCCCCEEEEEeCCCccChh--HHHHHHHhccchhh
Q 029082 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEE--VSFLFLIHQLVIRE 194 (199)
Q Consensus 143 ~~vG~q~~~A~G~A~A~k~~g~~~vvv~~~GDGatseG--~f~Eal~~~lP~~~ 194 (199)
+.+|.++|.|+|+|+|. ++.|+|++|||+...+ +++-+..++||++.
T Consensus 455 ~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~~~eL~ta~~~~lp~~i 503 (604)
T 2x7j_A 455 NGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHDLNGLLAAKKLGIPLTV 503 (604)
T ss_dssp CCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHTGGGGHHHHHHCCCEEE
T ss_pred CCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhHHHHHHHhhhcCCCeEE
Confidence 46789999999999993 5679999999997653 23334468999764
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=91.18 E-value=0.03 Score=51.74 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=32.2
Q ss_pred cccchhhhHHHHHHHhCCCCCEEEEEeCCCccC--hhHHHHHHHhccchhhh
Q 029082 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS--EEVSFLFLIHQLVIREI 195 (199)
Q Consensus 146 G~q~~~A~G~A~A~k~~g~~~vvv~~~GDGats--eG~f~Eal~~~lP~~~~ 195 (199)
|..+|.|+|+|++ ++.|+|++|||+.. -.+++.+..++||++-+
T Consensus 439 ~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~~~eL~ta~~~~l~~~iv 484 (578)
T 3lq1_A 439 DGVVSSALGASVV------FQPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIV 484 (578)
T ss_dssp SSHHHHHHHHTTT------SSSEEEEEEHHHHHHTGGGGHHHHHTTCCEEEE
T ss_pred ccHHHHHHHHhcC------CCCEEEEEchHHHHhhHHHHHhhccCCCCeEEE
Confidence 3357888888632 56799999999975 34566677799998643
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=30.34 E-value=26 Score=35.50 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=25.5
Q ss_pred CCEEEEEeCCC---ccChhHHHHHHHhccchhhh
Q 029082 165 DACAVTYFGDG---GTSEEVSFLFLIHQLVIREI 195 (199)
Q Consensus 165 ~~vvv~~~GDG---atseG~f~Eal~~~lP~~~~ 195 (199)
++-|+|+.||| .++-+++.-++..++||+-+
T Consensus 953 ~~~Vv~i~GDG~~~~mg~~eL~ta~~~~~~v~ii 986 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGYGGLDHVLASGEDVNVF 986 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTHHHHHHHHHTTCSCEEE
T ss_pred CCcEEEEeCcHHHHHcchHHHHHHHHhCCCeEEE
Confidence 36899999999 45778888888899998654
No 47
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=25.29 E-value=85 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCCCceeeeCCCCCCCC-CCCCCCCCHHHHHHHHHH
Q 029082 10 ERIPCYRVLDDDGQPFP-DSSFVKVSEGVAIKMYND 44 (199)
Q Consensus 10 ~~~~~~~~l~~~G~~~~-~~~~~~~~~e~l~~lyr~ 44 (199)
..+|.+-++|.+|+++. ....-..+.+++.+..+.
T Consensus 90 ~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 90 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 56799999999999973 122345678888777654
No 48
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=22.47 E-value=68 Score=22.42 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCCCceeeeCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 029082 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDM 45 (199)
Q Consensus 10 ~~~~~~~~l~~~G~~~~~~~~~~~~~e~l~~lyr~M 45 (199)
..+|.+=++|++|+++... ....+.+++.++.+.+
T Consensus 107 ~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 107 NGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNEL 141 (152)
T ss_dssp CSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHH
Confidence 4678899999999987653 3445677777766544
No 49
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=21.53 E-value=38 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=30.7
Q ss_pred CchhHHHHHHHhhccCC--------CeeecCCCchHHHHhcCCCHHHHHHHhhcCC
Q 029082 71 SGEEAINIASAAAIKND--------DFVVPQYREPGVLLWRGFSMQEFANQCFGNK 118 (199)
Q Consensus 71 ~GqEa~~vg~~~al~~~--------D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~ 118 (199)
.|+||+-+.+++.=+.. |.+| --.-.+..+|+++.+++.++-.|.
T Consensus 41 vgEEA~E~iiAak~~d~~el~~E~ADLlY---HllVlL~~~gv~l~dV~~eL~~R~ 93 (116)
T 2a7w_A 41 VAEEAAETLMASKDKDKLHLVREVADLWF---HTMVLLTYHGLRPEDVVMELHRRE 93 (116)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHh
Confidence 79999998765542221 3332 234566689999999999986664
No 50
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=20.33 E-value=42 Score=24.73 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=30.8
Q ss_pred CchhHHHHHHHhhccCC---------CeeecCCCchHHHHhcCCCHHHHHHHhhcCC
Q 029082 71 SGEEAINIASAAAIKND---------DFVVPQYREPGVLLWRGFSMQEFANQCFGNK 118 (199)
Q Consensus 71 ~GqEa~~vg~~~al~~~---------D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~ 118 (199)
.|+||+-+.+++. +.+ |.+ |--.-.+..+|+++.+++.++-.|.
T Consensus 40 vgEEA~E~iiAak-~~d~~~l~~E~ADLl---YHllVlL~~~gv~l~dV~~eL~~R~ 92 (115)
T 1yvw_A 40 IGEECAEVIIACK-NNDKEEVVKEMVDVF---YHCFVLLAEKNIALEDVMREVKERN 92 (115)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHH---HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHH---HHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 7999999876553 322 332 2234466689999999999987664
Done!