BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029083
(199 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 259 bits (661), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 1/163 (0%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS A S+G EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1 MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60 KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+KYQAYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFK
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKT 162
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/163 (79%), Positives = 140/163 (85%), Gaps = 6/163 (3%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKT 157
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 130/163 (79%), Positives = 140/163 (85%), Gaps = 6/163 (3%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKT 157
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/149 (83%), Positives = 131/149 (87%), Gaps = 2/149 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P AS P+TFK VALFSKKK A K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKT 160
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/149 (83%), Positives = 130/149 (87%), Gaps = 2/149 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A RT AP AS+P+TFK VALFSKKKAAP VSP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGASRT-APSASSPATFKTVALFSKKKAAPAKAKP-APVSPADEELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKT 160
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/149 (83%), Positives = 132/149 (88%), Gaps = 2/149 (1%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P A+ P+TFK VALFSKKKAA K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKT 160
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/165 (78%), Positives = 138/165 (83%), Gaps = 7/165 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ EMLGNP+++ A R SAP S P TFK VALFSKKKAAPP
Sbjct: 1 MASLAASTA-----AMSEMLGNPVSLRGATR-SAPSPSTPVTFKTVALFSKKKAAPPPPK 54
Query: 61 KPVA-VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
K A VSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+D
Sbjct: 55 KKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPED 114
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
F+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTG 159
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/149 (81%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S R+SAP SN S FK VALFSKKKAAPP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGGARSSAPTPSNSSIFKTVALFSKKKAAPPKPKAAAVAP-ADEELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKT 161
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPG-ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVN 69
A S+ EMLG+P+ S R +AP AS+P+TFK VALF KK AA P K+K A SP++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPASSPATFKTVALFKKKSAAAPVKAKAAAASPLD 63
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ELAKWYGPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELI
Sbjct: 64 DELAKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELI 123
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 124 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 158
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/152 (75%), Positives = 129/152 (84%), Gaps = 3/152 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+P+TFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPATFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
RWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 150
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/153 (74%), Positives = 124/153 (81%), Gaps = 2/153 (1%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+G EMLG PLN + R SAP AS P+TFK VALFSKKK A K VS N+
Sbjct: 3 ATSLGVSEMLGTPLNFRAVSRPSAPLASIPATFKTVALFSKKKPA--PPPKAKTVSAAND 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIH
Sbjct: 61 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAG IIPEA NK+GANCGPEAVWFK
Sbjct: 121 ARWAMLGAAGCIIPEALNKYGANCGPEAVWFKT 153
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 131/153 (85%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+ +TFK VALF KK AA PAK+K AVSP ++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPSPSSSATFKTVALFKKKAAAAPAKAKAAAVSPADD 63
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 64 ELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIH 123
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 124 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 156
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/149 (77%), Positives = 123/149 (82%), Gaps = 4/149 (2%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EML NPL+ SS SAP S P+TFK VALF KK AAP A VN+ELAK
Sbjct: 14 GVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASP-VNDELAK 69
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKT 158
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/149 (79%), Positives = 129/149 (86%), Gaps = 1/149 (0%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N S A R + AS+P++FK VALFSKKKA P K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINFSGATRPAPS-ASSPASFKTVALFSKKKATPTPPKKAAAAAPANDELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKT 161
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/149 (79%), Positives = 130/149 (87%), Gaps = 3/149 (2%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKT 159
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/153 (76%), Positives = 131/153 (85%), Gaps = 1/153 (0%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+P+TFK VALF KK AA PAK VA++P +E
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPSSPATFKTVALFKKKAAAAPAKKA-VAIAPADE 62
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 63 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIH 122
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAGF+IPEAFNKFGA+CGPEAVWFK
Sbjct: 123 ARWAMLGAAGFVIPEAFNKFGADCGPEAVWFKT 155
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/149 (79%), Positives = 129/149 (86%), Gaps = 3/149 (2%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEAFNK+GANCGPEAVWFK
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKT 159
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/156 (68%), Positives = 120/156 (76%), Gaps = 8/156 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS----P 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 3/152 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
RWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 150
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 129/152 (84%), Gaps = 3/152 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
RWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 150
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 124/158 (78%), Gaps = 12/158 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS--- 66
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 67 -PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFK
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKT 153
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 124/158 (78%), Gaps = 12/158 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS--- 66
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 67 -PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFK
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKT 153
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 123/156 (78%), Gaps = 6/156 (3%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFK
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTG 154
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 208 bits (530), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/156 (67%), Positives = 123/156 (78%), Gaps = 6/156 (3%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFK
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTG 154
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/156 (67%), Positives = 119/156 (76%), Gaps = 8/156 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS----P 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 122/155 (78%), Gaps = 6/155 (3%)
Query: 12 ASIGAKEMLGNPLN--VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ +MLG LN VSS T+AP K V+LFSKK A P + + SP +
Sbjct: 2 AALAPSKMLGTRLNFAVSSRYATAAP---TTGAQKIVSLFSKKPAPKPKPAAVTSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYEL
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
IHARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 121/152 (79%), Gaps = 12/152 (7%)
Query: 18 EMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS----PVNEE 71
++LG LN + + R T+AP A K V+LFSKK P K KPV VS +++E
Sbjct: 7 KILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPVPVSSSSPDISDE 60
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYELIHA
Sbjct: 61 LAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 120
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
RWAMLGAAG +IPEA NKFGANCGPEAVWFK
Sbjct: 121 RWAMLGAAGAVIPEACNKFGANCGPEAVWFKT 152
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 120/153 (78%), Gaps = 2/153 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 120/153 (78%), Gaps = 2/153 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/153 (69%), Positives = 120/153 (78%), Gaps = 2/153 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 153
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/152 (74%), Positives = 123/152 (80%), Gaps = 4/152 (2%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG+PL + A R S+ AS P+ K VALFSKKKAA P N+E
Sbjct: 2 ASLGVSEMLGSPLKFAVASRPSSASASTPA--KIVALFSKKKAA--PAKTKAPPPPANDE 57
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+KYQAYELIHA
Sbjct: 58 LAKWYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 117
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
RWAMLGAAGFIIPEAFNKFGANCGPEAVWFK
Sbjct: 118 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 149
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/158 (69%), Positives = 122/158 (77%), Gaps = 9/158 (5%)
Query: 12 ASIGAKEMLGNPLNV--SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVS--- 66
A++ +MLG LN SS+ T+AP A K V+LF P AK KP VS
Sbjct: 2 AALAPTKMLGTRLNFTGSSSYTTAAPTAGAK---KIVSLFGGFNKKPAAKPKPAPVSSSG 58
Query: 67 -PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+KYQA
Sbjct: 59 ADIDDELAKWYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 119 YELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKT 156
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 126/173 (72%), Gaps = 10/173 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKT 173
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/174 (63%), Positives = 126/174 (72%), Gaps = 10/174 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTG 174
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 126/174 (72%), Gaps = 10/174 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
FGLSKKP++F KYQAYELIHARWAMLGAAGFI+PEAFNKFGA CGPEAVWFK
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTG 174
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/199 (57%), Positives = 132/199 (66%), Gaps = 10/199 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRS 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 LLLYVVYLLMVLLMSCFCR 189
L + + C CR
Sbjct: 181 GTLSYFGASIPINFDCCCR 199
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 125/174 (71%), Gaps = 10/174 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
FGL KKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 121 FGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTG 174
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/158 (64%), Positives = 120/158 (75%), Gaps = 9/158 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG L+ + + R T+AP A K V+LF + P K KP V+
Sbjct: 2 AALAPTKMLGTRLDFAGSSRYATAAPTAG---AQKIVSLFDRFNKKPAPKPKPAPVATSS 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 59 AGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+ELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 119 FELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKT 156
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/96 (89%), Positives = 91/96 (94%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYEL
Sbjct: 54 SEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYEL 113
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
IHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 114 IHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTG 149
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/173 (61%), Positives = 123/173 (71%), Gaps = 11/173 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGA-----SNPSTFKPVALFS----- 50
MAS+ A + AA A ++L NPLN++ ++A ++PS + V+LF
Sbjct: 1 MASMRALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPS-LQVVSLFGFKKKA 59
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
PP A +P EELAKWYGPDRRIFLPEGLLDR +IPEYL GEVPGDYGYDP
Sbjct: 60 APPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDP 119
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
FGL +KP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFK
Sbjct: 120 FGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKT 172
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 89/95 (93%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
N+ELAKWYG RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF KYQAYEL
Sbjct: 52 NDELAKWYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYEL 111
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
IHARWAMLGAAGF+IPEAFNKFGA CGPEAVWFK
Sbjct: 112 IHARWAMLGAAGFVIPEAFNKFGAQCGPEAVWFKT 146
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/97 (85%), Positives = 90/97 (92%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
P NEELAKWYGPDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF +YQAY
Sbjct: 40 PSNEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAY 99
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ELIHARWAMLGAAGF++PEAFNKFGA CGPEAVW+K
Sbjct: 100 ELIHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKT 136
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 89/95 (93%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
EELAKWYGPDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF +YQAYELI
Sbjct: 1 EELAKWYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELI 60
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
HARWAMLGAAGF++PEAFNKFGA CGPEAVW+K
Sbjct: 61 HARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTG 95
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 84/87 (96%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKV 163
GAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKT 92
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 94/126 (74%), Gaps = 2/126 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAML 136
ARW +L
Sbjct: 121 ARWVVL 126
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/71 (92%), Positives = 68/71 (95%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 153 NCGPEAVWFKV 163
NCGPEAVWFK
Sbjct: 61 NCGPEAVWFKT 71
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 78/137 (56%), Gaps = 20/137 (14%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVN-------------------EELAKWYGPDRRIFLPEG 87
ALF K A+ PAK + V +L KWYGPDR++FLP G
Sbjct: 5 ALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSG 64
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L DRSEIPEYL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML AAG +IPE
Sbjct: 65 LYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGL 124
Query: 148 NKFGANCGPEAVWFKVN 164
GAN WF+
Sbjct: 125 QANGANI-KGGTWFETG 140
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 84/140 (60%), Gaps = 14/140 (10%)
Query: 38 SNPSTFKPVALFSKKKAAP---PAKSKPVAVSPVN----------EELAKWYGPDRRIFL 84
S K ALFSK K+AP P+ K A + + L KWYGP R +FL
Sbjct: 14 STSRVVKVNALFSKGKSAPKRSPSPKKSAAGTKKTGGWLGGEGGAQNLDKWYGPSRVLFL 73
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
P GLL+RS++P YLTG++ GDYGYDP GL K P+ KY+A+ELIHARWAML AAG IIP
Sbjct: 74 PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIP 133
Query: 145 EAFNKFGANCGPEAVWFKVN 164
E GA+ A WF+
Sbjct: 134 EGLAANGADI-KGATWFETG 152
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 78/134 (58%), Gaps = 17/134 (12%)
Query: 47 ALFSKKKAAPPAK---SKPVAVSPVNE-------------ELAKWYGPDRRIFLPEGLLD 90
ALF K A+ PAK S V P + L KWYGPDR +FLP GL D
Sbjct: 5 ALFKKTAASAPAKKGTSSTKVVKPSGKATKGWLGGQGGAVNLDKWYGPDRVLFLPSGLYD 64
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
RSE+P YL GE+ GDYGYDP GL K + +KY+ YEL+HARWAML AAG +IPE
Sbjct: 65 RSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQAN 124
Query: 151 GANCGPEAVWFKVN 164
GAN VWF+
Sbjct: 125 GANI-KGGVWFETG 137
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 8/107 (7%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+++P A S + WYGPDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 GRARPTAASG-----SPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 85
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
+ F+K + E+IH RWAMLG AGFIIPEA NKFGANCGPEAVWFK
Sbjct: 86 ETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTG 132
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGPDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +KY+ EL+H
Sbjct: 18 DLDKWYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLH 77
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
ARWAML AAG +IPE GAN WF+
Sbjct: 78 ARWAMLAAAGILIPEGLQANGANI-KGGTWFETG 110
>gi|16930763|gb|AAL32041.1|AF439282_1 chl a/b-binding protein [Retama raetam]
Length = 99
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 7/100 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFS---KKKAAPP 57
MASLAAS T A S+G EMLGNP+N+S R AP SNP+TFK VALFS KKKAAPP
Sbjct: 1 MASLAAS-TAAGSLGMSEMLGNPINLSGVTRL-APSPSNPATFKTVALFSNFNKKKAAPP 58
Query: 58 AKSKPVA--VSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95
K KP A VSP ++ELAKWYGPDRRIFLP+GLLDRSEIP
Sbjct: 59 PKQKPAAAAVSPADDELAKWYGPDRRIFLPDGLLDRSEIP 98
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGP+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + KY+A EL+H
Sbjct: 42 DLEKWYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLH 101
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
ARWAML AAG +IPE GA+ WF+
Sbjct: 102 ARWAMLAAAGILIPEGLQANGADI-KGGTWFET 133
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
L KWYGPDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SKYQA EL+H
Sbjct: 44 NLDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLH 103
Query: 131 ARWAMLGAAGFIIPEAFNKFGANC--------------GPEAVWFKVNL-HFSRSLLLYV 175
ARWAML AAG IIPE GA+ G WF V + + S L L+V
Sbjct: 104 ARWAMLAAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFV 163
Query: 176 VYLLMVLLMSC 186
V V LM
Sbjct: 164 VVAANVALMGA 174
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 52 KKAAPPAKSKP-VAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
KKAA ++K + + L KWYGP R +FLP GLLD S++P YL G + GDYGYDP
Sbjct: 69 KKAASGKRTKGWFGEAGGAQGLDKWYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDP 128
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
GL K KY+AYELIHARWAML AAG IIPE GA WF+
Sbjct: 129 LGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGAAI-KGGTWFETG 181
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
+ + PA + A V +WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSSVRPATASSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTA 67
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRS 170
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK F+
Sbjct: 68 GLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEG 127
Query: 171 LLLYVVYLLMVLLMSCFCRLELYFLM 196
L Y+ +V S L ++
Sbjct: 128 GLNYLGNENLVHAQSIIATLAFQVVV 153
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++ V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 17 SIRNVSRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL---------HFSRSLLLY 174
+ ELIHARWAMLGA G + PE +K+G E+VWFK + S L++
Sbjct: 75 REQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIH 134
Query: 175 VVYLLMVLLMSCFCRLELYFLMETH 199
+L +L C++ L L+E +
Sbjct: 135 AQSILAIL----GCQVVLMGLIEAY 155
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G ++P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLEL 192
AMLGA G + PE +K+ EAVWFK F+ L Y+ +V S L
Sbjct: 89 AMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAF 148
Query: 193 YFLM 196
++
Sbjct: 149 QVVV 152
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 79/157 (50%), Gaps = 5/157 (3%)
Query: 35 PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
P PS F+ +L S P KS ++ WYGPDR FL G +
Sbjct: 14 PNPFTPSDFRVYSLGSATHHQHPTKSSGSTAPQLSSW--PWYGPDRPKFL--GPFSEGDT 69
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 155 GPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRL 190
EAVWFK F+ L Y+ +V S L
Sbjct: 130 FGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATL 166
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 73/139 (52%), Gaps = 19/139 (13%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
AV+TS G + ST P +K V+V E WYGPDR +L G
Sbjct: 1 AVQTSLVGTTTKSTL-------------PKGNKRVSVQAAVE----WYGPDRAKWL--GP 41
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
+P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE
Sbjct: 42 YSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILA 101
Query: 149 KFGANCGPEAVWFKVNLHF 167
K+G E+VWF+
Sbjct: 102 KYGGTSFGESVWFRAGAQI 120
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
VA + + + PA A V +WYGPDR FL G + P YLTGE PGD
Sbjct: 4 VAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGD 61
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL 165
YG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK
Sbjct: 62 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 121
Query: 166 H-FSRSLLLYVVYLLMVLLMSCFCRLELYFLM 196
F+ L Y+ +V S L ++
Sbjct: 122 QIFAEGGLNYLGNENLVHAQSIIATLAFQVVV 153
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 53 KAAPPAKSKPVAVSP-----VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
K+A + +PV V+ V +WYGPDR FL G + P YLTGE PGDYG
Sbjct: 6 KSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYG 63
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH- 166
+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK
Sbjct: 64 WDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQI 123
Query: 167 FSRSLLLYVVYLLMVLLMSCFCRLELYFLM 196
F+ L Y+ +V S L ++
Sbjct: 124 FAEGGLNYLGNENLVHAQSIIATLAFQVVV 153
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 59 KSKPVAVSPVNEELAK--------WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+S V +PV A+ WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDT 67
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSR 169
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK F+
Sbjct: 68 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 127
Query: 170 SLLLYVVYLLMVLLMSCFCRLELYFLM 196
L Y+ +V S L ++
Sbjct: 128 GGLNYLGNENLVHAQSIIATLAFQVVV 154
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 80/142 (56%), Gaps = 9/142 (6%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
+V V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 1 SVRNVSRNAIEWYGPDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 58
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKF-GANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV 181
+ ELIHARWAMLGA G + PE K+ G +CG E+VWFK F L Y+ +V
Sbjct: 59 REQELIHARWAMLGALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLV 117
Query: 182 LLMSCF----CRLELYFLMETH 199
S C++ L L+E +
Sbjct: 118 HAQSILAILGCQVVLMGLIEAY 139
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 130 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 187
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLM 184
ELIHARWAMLGA G + PEA K G E VWFK FS L Y+ +V
Sbjct: 188 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 246
Query: 185 SCFCRLELYFLM 196
S L ++
Sbjct: 247 SILAILAFQVVL 258
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 370 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 427
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLM 184
ELIHARWAMLGA G + PEA K G E VWFK FS L Y+ +V
Sbjct: 428 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 486
Query: 185 SCFCRLELYFLM 196
S L ++
Sbjct: 487 SILAILAFQVVL 498
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 353 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 410
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLM 184
ELIHARWAMLGA G + PEA K G E VWFK FS L Y+ +V
Sbjct: 411 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 469
Query: 185 SCFCRLELYFLM 196
S L ++
Sbjct: 470 SILAILAFQVVL 481
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 593 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 650
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLM 184
ELIHARWAMLGA G + PEA K G E VWFK FS L Y+ +V
Sbjct: 651 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 709
Query: 185 SCFCRLELYFLM 196
S L ++
Sbjct: 710 SILAILAFQVVL 721
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 113 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 170
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLM 184
ELIHARWAMLGA G + PEA K G E VWFK FS L Y+ +V
Sbjct: 171 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 229
Query: 185 SCFCRLELYFLM 196
S L ++
Sbjct: 230 SILAILAFQVVL 241
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ Y+ EL+HARW
Sbjct: 119 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARW 176
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
AMLGA G + PE N + E VW+K
Sbjct: 177 AMLGALGCVFPEVINSYYNGNIAEPVWWK 205
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
+ V + + K A +K V+V E WYGPDR +L G +P YLTGE P
Sbjct: 6 QSVLVGATAKTALVKGNKRVSVQAAVE----WYGPDRAKWL--GPYSDGAVPSYLTGEFP 59
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
GDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE K+G E+VWF+
Sbjct: 60 GDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRA 119
Query: 164 NLHF 167
Sbjct: 120 GAQI 123
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 27 SSAVRTSAPG-----ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+ V+ +AP A P+ K + KK K+ PV + +L+KWYGP R+
Sbjct: 17 AKTVKKTAPAKKAVPAKKPTPAKKAPVTVKKTVK---KAAPVKTTVKTADLSKWYGPQRK 73
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
++LP GLL ++IP YL G++ GDYG+DP GL +Y+ E+IHARWAML G
Sbjct: 74 LYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAVPGI 132
Query: 142 IIPEAFNKFGAN 153
+IPEA N G +
Sbjct: 133 VIPEALNIAGGD 144
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 32 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 89
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK---V 163
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ V
Sbjct: 90 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 148
Query: 164 NLHFSRSLLLYVVYLLMVLLMSCFCRLELYFLMETH 199
L S +L + + L ++ + ++FL+E +
Sbjct: 149 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENY 184
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLL 173
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK F L
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 174 YVVYLLMVLLMSCF----CRLELYFLMETH 199
Y+ +V S C++ L L+E +
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAY 154
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ P L S K KP + + + WYGP+R +FL G E P YLTG
Sbjct: 8 SSLAPRCLASTVKVEARRTVKPASKASTPDSF--WYGPERPLFL--GAF-TGEPPSYLTG 62
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVW
Sbjct: 63 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVW 121
Query: 161 FKVNLH-FSRSLLLYV 175
FK FS L Y+
Sbjct: 122 FKAGAQIFSEGGLDYL 137
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 28 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 85
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRL 190
AMLGA G I PE K G G EAVWFK F+ L Y+ +V S L
Sbjct: 86 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATL 142
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLEL 192
AMLGA G I PE K G G EAVWFK F+ L Y+ ++ S L
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 193 YFLM 196
++
Sbjct: 148 QVVV 151
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 39 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 96
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK---V 163
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ V
Sbjct: 97 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 155
Query: 164 NLHFSRSLLLYVVYLLMVLLMSCFCRLELYFLMETH 199
L S +L + + L ++ + ++FL+E +
Sbjct: 156 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENY 191
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF AL KA + P + +WYGP+R +L G + P YLTGE
Sbjct: 6 TFSRKALQVSAKATGKKGTSKTVAKPAPSGI-EWYGPNRAKWL--GPYSENATPAYLTGE 62
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K G G EAVWF
Sbjct: 63 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWF 121
Query: 162 KVNLH-FSRSLLLYVVYLLMV----LLMSCFCRLELYFLMETH 199
K F L Y+ +V ++ + C++ L L+E +
Sbjct: 122 KAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGY 164
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 80/148 (54%), Gaps = 15/148 (10%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDP 110
+KAAP KS V +L+KWYGP+RR++LP GLLD +++P YL G + GDYG+DP
Sbjct: 63 RKAAPVRKSSGKRGDGV--DLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHF--- 167
L K +Y+A E+IHARWAML G +IPEA P VW + F
Sbjct: 121 LQLGKD-GKVEQYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFLDG 173
Query: 168 --SRSLLLYVVYLLMVLLMSCFCRLELY 193
R +L YL + + F +E Y
Sbjct: 174 EAGRPEILQNPYLFAAIQIGLFAAVEGY 201
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRL 190
AMLGA G I PE K G G EAVWFK F+ L Y+ ++ S L
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATL 145
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTG+ PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIVRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLL 173
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK F L
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 174 YVVYLLMVLLMSCF----CRLELYFLMETH 199
Y+ +V S C++ L L+E +
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAY 154
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 11 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRL 190
AMLGA G I PE K G G EAVWFK F+ L Y+ +V S L
Sbjct: 69 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATL 125
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV-------AVSPVNEELAKW 75
P+ ++ V+T A P P+ +K AAP K+ PV V+ + +KW
Sbjct: 50 PVKKTAPVKTVKKAAPAPKKTVPMKTVVRK-AAPVRKAAPVRKAGKASGVNQAGSDKSKW 108
Query: 76 YGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
YGP+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++Y+ E+ HARWA
Sbjct: 109 YGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWA 167
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193
ML G +IPEA G N F ++ R +L YL + ++ +E Y
Sbjct: 168 MLAVPGVVIPEALGVPGGNWTETGKVF-LDGEAGRPEILGNPYLFTAIEVALLAGVEGY 225
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 110
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 111 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLL 173
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK F L
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLD 124
Query: 174 YVVYLLMVLLMSCF----CRLELYFLMETH 199
Y+ +V S C++ L L+E +
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAY 154
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + +KK +++ + +P N WYGPDR FL + P YLTGE
Sbjct: 8 TFIGSQVANKKMVTSMRRTQKKSSAPDN----VWYGPDRPQFLGP---FSGDCPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KVN 164
K
Sbjct: 121 KAG 123
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 11/120 (9%)
Query: 52 KKAAPPAKSKPV--AVSPVNEE--LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
KK P K PV A PV+++ +AKWYGP+R+++LP GLL ++++P YL G + GDYG
Sbjct: 66 KKPTPATKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYG 125
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHF 167
+DP GL Y+ E++HARWAML G +IPEA N P VW + F
Sbjct: 126 FDPLGLGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNI------PGGVWTETGKVF 178
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ ++P +K K V + + +WYGPDR FL G P YL GE PGDYG+D
Sbjct: 16 RTVSSPKSKGKQVTRASI-----EWYGPDRPKFL--GPYSDGATPSYLKGEYPGDYGWDT 68
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSR 169
GLS P+ FS+Y+ E+IH+RWA+LG G + PE K+G EAVWFK FS
Sbjct: 69 AGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSA 128
Query: 170 SLLLYV 175
L Y+
Sbjct: 129 DGLNYL 134
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + PEYLTGE PGDYG+D GLS P F++Y+ ELIHARW
Sbjct: 27 EWYGPDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVY 177
AMLGA G ++PE K G VWFK NL ++S+L + +
Sbjct: 85 AMLGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 178 LLMVL 182
++V+
Sbjct: 145 QVVVM 149
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 83/163 (50%), Gaps = 12/163 (7%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + SKK +++ +P + WYGPDR FL + P YLTGE
Sbjct: 8 TFVGTQVASKKMVTSMRRTQKKGSAPD----SVWYGPDRPQFLGP---FSGDTPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KVNLH-FSRSLLLYVVYLLMVLLMSCF----CRLELYFLMETH 199
K F L Y+ +V S C++ L +E +
Sbjct: 121 KAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAY 163
>gi|222641394|gb|EEE69526.1| hypothetical protein OsJ_28989 [Oryza sativa Japonica Group]
Length = 225
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ +SS V A +++ + F + +K AA P KP A S + WYG DR ++
Sbjct: 1 MALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGADRVLY 52
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G +
Sbjct: 53 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 109
Query: 144 PEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCF 187
PE + G G EAVWFK + L + + CF
Sbjct: 110 PELLARNGVKFG-EAVWFKAGSQVLQGRGTRQTILQKIRMNHCF 152
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V +WYGPDR FL G + P YLTGE GDYG+D GLS P F+KY+ E
Sbjct: 22 VTRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIE 79
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSC 186
+IHARWAMLGA G I PE K G G EAVWFK F L Y+ +V S
Sbjct: 80 VIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVHAQSI 138
Query: 187 FCRLELYFLM 196
L + L+
Sbjct: 139 LATLAVQVLL 148
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
A G + PE ++ G G EAVWFK FS L Y+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
A G + PE ++ G G EAVWFK FS L Y+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 374 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++Y+ E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 489
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 153 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 210
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKVN 164
WAMLG G + PE N FG PE VWFK
Sbjct: 211 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTG 242
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + PE +K G G EAVWFK F L Y+ +V ++ + C
Sbjct: 94 AMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLVEGY 163
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP A S + WYGPDR +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 29 KPAAKSSTPDSF--WYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
+Y+ ELIHARWAMLGA G I PE +G G E+VWFK
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAG 126
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 36 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 92
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 93 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 143
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 271 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 327
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
E+IHARWAMLGA G + PE G G AVW+K
Sbjct: 328 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAG 366
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K+ E VWFK F+ L Y+
Sbjct: 185 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYL 227
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 88 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 144
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 145 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 195
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 9/111 (8%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 323 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 379
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IHARWAML + PE G G AVW+K FS L Y+
Sbjct: 380 AEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 425
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 578 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++Y+ E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 693
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 125 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 181
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 182 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 232
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
SP+N K YGPDR +L G +PEYLTGE+PGDYG+D GL P ++Y+
Sbjct: 832 SPLN----KLYGPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRV 884
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++IH RWAMLG G PE N++G E VWFK FS L Y+
Sbjct: 885 AQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYL 935
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 357 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 414
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKVN 164
WAMLG G + PE N FG PE VWFK
Sbjct: 415 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTG 446
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P
Sbjct: 135 ATSGKKSKAPAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADP 191
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++Y+ E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 192 VTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 250
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P
Sbjct: 135 ATSGKKSKAPAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADP 191
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++Y+ E+IHARWAMLGA G + PE G G AVW+K FS L Y+
Sbjct: 192 VTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYL 250
>gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea glauca]
Length = 151
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSR 169
MLGA G + PE K G G EAVWFK +SR
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGRRYSR 140
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + PE +K G G EAVWFK F L Y+ +V ++ + C
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLVEGY 163
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K+G E+VWFK F L Y+ +V S C+
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQ 153
Query: 190 LELYFLMETH 199
+ L +E +
Sbjct: 154 VVLMGAIEAY 163
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + PE +K G G EAVWFK F L Y+ +V ++ + C
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLVEGY 163
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + PE +K G G EAVWFK F L Y+ +V ++ + C
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLVEGY 163
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 114 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 171
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K+ E VWFK F+ L Y+
Sbjct: 172 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYL 214
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V+ +WYGPDR ++L G +P YL GE PGDYG+D GLS P+ F Y+ E
Sbjct: 1 VSRNAVEWYGPDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQE 58
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSC 186
LIHARWAMLGA G + PE +K+ E+VWFK F L Y+ +V S
Sbjct: 59 LIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSI 118
Query: 187 F----CRLELYFLMETH 199
C++ L L+E +
Sbjct: 119 LAILGCQVVLMGLIEAY 135
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL G +P YLTGE PGDYG+D GLS P+ F +++ E+IHARWA
Sbjct: 36 WYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G I PE K+ EAVWFK F+ L Y+ +V S L +
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQ 153
Query: 194 FLM 196
L+
Sbjct: 154 VLL 156
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPERPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNL---------HFSRSLLLYVVYLLMVL 182
MLGA G + PE K+G E+VWFK + S L++ Y+L +L
Sbjct: 94 MLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAIL 150
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FS 168
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK F+
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 169 RSLLLYVVYLLMVLLMSCFCRLELYFLM 196
L Y+ ++ S L + ++
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVL 153
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFK 118
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFK 118
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARW
Sbjct: 124 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARW 181
Query: 134 AMLGAAGFIIPEAFN-KFGANCGPEAVWFK 162
AMLGA G I PE +G E VWFK
Sbjct: 182 AMLGALGCIFPEILAMNYGVGL-EEPVWFK 210
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL G E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 34 WYGPERPLFL--GAF-TGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 90
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G I PE +G G EAVWFK F L Y+ +V S L
Sbjct: 91 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQ 149
Query: 194 FLM 196
L+
Sbjct: 150 VLL 152
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 111 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 168
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
AMLGA G + PE +K+ E VWFK
Sbjct: 169 AMLGALGCVTPELLSKYSGVPIAEPVWFK 197
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 87/158 (55%), Gaps = 18/158 (11%)
Query: 20 LGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
L +P V TSA NPS+ + A F+ +K+A +K VA S + WYGP
Sbjct: 8 LSSPTLTGKPVETSA----NPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYGP 55
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA
Sbjct: 56 DRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE ++ G G EAVWFK FS L Y+
Sbjct: 113 LGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 149
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL G E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFL--GAF-TGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE +G G EAVWFK F L Y+
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYL 138
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G I PE +G G EAVWFK
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAG 126
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 81/155 (52%), Gaps = 8/155 (5%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S K K A S ++YGP+R +L G + P YLTGE PGDYG+D
Sbjct: 15 SAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWD 72
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FS 168
GLS P+ F +Y+ ELIHARWAMLGA G + PE K G G EAVWFK FS
Sbjct: 73 TAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQFG-EAVWFKAGAQIFS 131
Query: 169 RSLLLYVVYLLMV----LLMSCFCRLELYFLMETH 199
L Y+ +V ++ + C++ L L+E +
Sbjct: 132 EGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGY 166
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S P + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSVPASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 143 IFSEGGLDYL 152
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 78/137 (56%), Gaps = 13/137 (9%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS+ A + +K A AK KP A + WYGPDR ++L G L E P YLT
Sbjct: 17 PSSLFGEARVTMRKTA--AKPKPAASG------SPWYGPDRVLYL--GPLS-GEPPSYLT 65
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAV
Sbjct: 66 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAV 124
Query: 160 WFKVNLH-FSRSLLLYV 175
WFK FS L Y+
Sbjct: 125 WFKAGSQIFSEGGLDYL 141
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV +SP ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLSPSSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 86/158 (54%), Gaps = 13/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
E LAKWYGPDR+++LP GLL ++++P YL G + GDYG+DP GL +Y+ E+I
Sbjct: 97 EALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVI 155
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHF 167
HARWAML G +IPEA P VW + F
Sbjct: 156 HARWAMLAIPGVVIPEALGL------PGGVWTETGKVF 187
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLG G + PE K+ E VWFK F+ L Y+
Sbjct: 185 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYL 227
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 126 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 183
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLG G + PE K+ E VWFK F+ L Y+
Sbjct: 184 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYL 226
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASSG-----SPWYGADRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLG G + PE + G G EAVWFK FS L Y+
Sbjct: 87 ETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 39 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 96
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLEL 192
AMLGA G I PE K G G EAVWFK FS L Y+ +V + L +
Sbjct: 97 AMLGALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 155
Query: 193 YFLM 196
++
Sbjct: 156 QVIL 159
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IHARWA
Sbjct: 48 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE +K G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
K V S+K A A+ + +A + + WYG DR ++L G S P YLTG
Sbjct: 16 QQLKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYL--GPFSGSP-PSYLTG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F+K + ELIHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 131
Query: 161 FKVNLH-FSRSLLLYV 175
FK F+ L Y+
Sbjct: 132 FKAGSQIFAEGGLDYL 147
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV ++P ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYL 147
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V A++YGPDR FL P YL GE PGDYG+D GLS P+ FS+Y
Sbjct: 17 ATRQVTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSADPETFSRY 73
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+ E+IHARWAMLGA G + PE K GA EAVWFK
Sbjct: 74 RELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFK 112
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 39 NPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
NPS+ + A F+ +K+A +K VA S + WYGPDR +L E P Y
Sbjct: 24 NPSSQELGAARFTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGESPSY 72
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G E
Sbjct: 73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-E 131
Query: 158 AVWFKVNLH-FSRSLLLYV 175
AVWFK FS L Y+
Sbjct: 132 AVWFKAGSQIFSEGGLDYL 150
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 44 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 97
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 98 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV ++P ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK FS L Y+
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 146 IFSEGGLDYL 155
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 83/159 (52%), Gaps = 19/159 (11%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP------VALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
+ SS TS A P P VA F+ +K A +K VA S + WYG
Sbjct: 1 MAASSMALTSPALAGKPVKLTPSSQELGVAKFTMRKGA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
A G + PE ++ G G EAVWFK FS L Y+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + P+ +K G EA+WFK F L Y+ L +V ++ + C
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLVEGY 163
>gi|47026947|gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 72/128 (56%), Gaps = 13/128 (10%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A +KP VS + WYGPDR +L G E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA----AKPKTVS----SGSPWYGPDRVKYL--GPFS-GEAPSYLTGEFPGDYGW 81
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-F 167
D GLS P+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK F
Sbjct: 82 DTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 140
Query: 168 SRSLLLYV 175
S L Y+
Sbjct: 141 SEGGLDYL 148
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 70/119 (58%), Gaps = 12/119 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K + SP WYGPDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKATSGSP-------WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|397789264|gb|AFO67221.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 152
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
PV + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 PVASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 99 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L+ +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 46 NEKLSAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 102
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF 187
IHARWAMLGA G I PE K G E VWFK F+ L Y+ +V S
Sbjct: 103 IHARWAMLGALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSIL 161
Query: 188 CRLELYFLM 196
L + ++
Sbjct: 162 ATLAVQVIL 170
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP A S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPAAASG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
KSKPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 KSKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 88
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 148 IFSEGGLDYL 157
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
V + + KKAA ++K +P +WYGPDR +L + P YLTGE PGD
Sbjct: 13 VKVEAAKKAAGTKQTK---AAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGD 66
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL 165
YG+D GLS P+ F KY+ E+IHARWA+LGA G + PE + + E VWFK
Sbjct: 67 YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126
Query: 166 H-FSRSLLLYV 175
FS L Y+
Sbjct: 127 QIFSEGGLDYL 137
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 71/130 (54%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 143 IFSEGGLDYL 152
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR FL ++ P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSC 186
+IHARWAMLGA G + PE K G + G EAVWFK F L Y+ +V S
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSI 143
Query: 187 FCRLELYFLM 196
L ++
Sbjct: 144 IATLACQVIL 153
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++ + P YLTGE PGDYG+D GLS +P+ F+K + E+IHARWA
Sbjct: 52 WYGPDRVKYMGP---FSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRS 170
MLG G I+PE + G G EAVWFK R
Sbjct: 109 MLGTVGCIVPELLERNGVKIG-EAVWFKAGSQIFRD 143
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
AMLGA G + PE K G G EAVWFK
Sbjct: 94 AMLGALGIVTPELLQKNGVQFG-EAVWFK 121
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 40 NEKLGAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 96
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF 187
IHARWAMLGA G + PE K G E VWFK F L Y+ ++ S
Sbjct: 97 IHARWAMLGALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSIL 155
Query: 188 CRLELYFLM 196
L + ++
Sbjct: 156 ATLAVQVIL 164
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 148 IFSEGGLDYL 157
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L R E P YLTG+ PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A P K P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 21 SMRKTAAPKKVAPSG-SP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWD 69
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FS 168
GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS
Sbjct: 70 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFS 128
Query: 169 RSLLLYV 175
L Y+
Sbjct: 129 EGGLDYL 135
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 8/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G + PE K G G EAVWFK FS L Y+ +V ++ + C
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 153 QVILMGLIEGY 163
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K VA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 96
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 97 AKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 151
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P++F+K + E+IH RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 75/139 (53%), Gaps = 21/139 (15%)
Query: 54 AAPPAKSKPVAVSPVNEELAK----------------WYGPDRRIFLPEGLLDRSEIPEY 97
++P K V +SP +E+ + WYGPDR +L E P Y
Sbjct: 9 SSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP---FSGEPPSY 65
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G G E
Sbjct: 66 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-E 124
Query: 158 AVWFKV-NLHFSRSLLLYV 175
AVWFK +L FS L Y+
Sbjct: 125 AVWFKAGSLIFSEGGLDYL 143
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFK 162
MLG G +PEA K+ G N G E+VWFK
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFK 128
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFK 162
MLG G +PEA K+ G N G E+VWFK
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFK 128
>gi|157267420|gb|ABV26426.1| light-harvesting chlorophyll a/b-binding protein [Camellia
sinensis]
Length = 153
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 46 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 103 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 143
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 57 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 114
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ ++S P A F + +K AA P KP A + WYG DR ++
Sbjct: 1 MAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGADRVLY 51
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 52 L--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 108
Query: 144 PEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
PE + G G EAVWFK FS L Y+
Sbjct: 109 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 140
>gi|397789260|gb|AFO67219.1| putative chlorophyll a/b binding protein, partial [Aralia elata]
Length = 155
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
LF + + +KPV+ + WYGPDR +L E P YLTGE PGDYG
Sbjct: 27 LFGNGRISMRKTAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYG 77
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH- 166
+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQI 136
Query: 167 FSRSLLLYV 175
FS L Y+
Sbjct: 137 FSEGGLDYL 145
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWLDYL 159
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 146 IFSEGGLDYL 155
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 146 IFSEGGLDYL 155
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 143 IFSEGGLDYL 152
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSGSL------WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V ++YGPDR FL G +P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 25 ARKQVTRASVEFYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARY 82
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKVN 164
+ ELIH+RWA+LGA G + PE + GA + G AVWFK
Sbjct: 83 REIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAG 124
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|302856917|ref|XP_002959743.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
gi|300254465|gb|EFJ39192.1| hypothetical protein VOLCADRAFT_85008 [Volvox carteri f.
nagariensis]
Length = 179
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 65/109 (59%), Gaps = 4/109 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV 181
AMLGA G + P+ +K G EA+WFK F L Y+ L +V
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLGNLSLV 141
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYL 135
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---VNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + K ++K+A P + +P + +L WYGPDR +L ++
Sbjct: 8 ASSATVVKQTPFLGQRKSANPLRDVVAMGTPKFTMGNDL--WYGPDRVKYLGP---FSAQ 62
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYL 145
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
++WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 47 SQWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
WAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 104 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHAR+
Sbjct: 30 EWYGPNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARF 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K+G E+VWF+ F L Y+
Sbjct: 88 AMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYL 130
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYL 135
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ S + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSS------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 18 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 67
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 68 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 126
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 127 IFSEGGLDYL 136
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYL 135
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 12/130 (9%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 143 IFSEGGLDYL 152
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 79/150 (52%), Gaps = 18/150 (12%)
Query: 52 KKAAPPAKS--KPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGY 108
KKAAP KS KP S +LAKWYG +RR +LP GLLD +++P Y+ G + GDYG+
Sbjct: 60 KKAAPVKKSSGKP---SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGF 116
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHF- 167
DP L + Y+A E+IHARWAML G +IPEA P VW + F
Sbjct: 117 DPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFL 169
Query: 168 ----SRSLLLYVVYLLMVLLMSCFCRLELY 193
R +L + + ++ F +E Y
Sbjct: 170 DGEAGRPEILQNPIIFAGIQIALFAAVEGY 199
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 59 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 115
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 116 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 156
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 73 MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 113
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPL-SGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPL-SGDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 36 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 87 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 39 NPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
NPST + S +K+A KP VS + WYGPDR +L E P
Sbjct: 21 NPSTSDMIGEGRISMRKSA----GKPKNVS----SGSPWYGPDRVKYLGP---FSGEAPS 69
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE + G G
Sbjct: 70 YLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG- 128
Query: 157 EAVWFKVNLH-FSRSLLLYV 175
EAVWFK FS L Y+
Sbjct: 129 EAVWFKAGSQIFSEGGLDYL 148
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE F + G G EAVW K FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYL 148
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 77/145 (53%), Gaps = 7/145 (4%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLLDR 91
A AS+ + K ++K+A P + VA+ + WYGPDR +L
Sbjct: 5 AATASSATVVKQTPFLGQRKSANPLRDV-VAMGTSKFTMGNDLWYGPDRVKYLGP---FS 60
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYL 145
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEVLSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 93 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYL 134
>gi|414591310|tpg|DAA41881.1| TPA: hypothetical protein ZEAMMB73_898154 [Zea mays]
Length = 95
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 69/97 (71%), Gaps = 6/97 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPG+
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGE 95
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 73 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 113
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 159
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 66/115 (57%), Gaps = 12/115 (10%)
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
PV+ SP WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 PVSDSP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 91
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 43 FKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ S+K A A+ K V+ S ++ + WYG DR FL E P YL
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSI--WYGADRPKFLGP---FSGETPSYLN 73
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 132
Query: 160 WFKVNLH-FSRSLLLYV 175
WFK FS L Y+
Sbjct: 133 WFKAGAQIFSEGGLDYL 149
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 60 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 116
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 117 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 157
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 7/150 (4%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA + + K + F +K + + + + WYGPDR +L
Sbjct: 3 TSAIQQSA--FTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE
Sbjct: 61 ---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 147 FNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
K G G EAVWFK FS L Y+
Sbjct: 118 LEKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 112
++A P K + V ++YGPDR FL +E P YL GE PGDYG+D G
Sbjct: 11 RSAVPTKGQ--GNKQVTRAAIEFYGPDRAGFLGP----FTESPSYLKGEFPGDYGWDTAG 64
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSL 171
LS P+ F++Y+ E+IHARWAMLGA G + PE K G + G EAVWFK F
Sbjct: 65 LSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDG 123
Query: 172 LLYVVYLLMVLLMSCFCRLELYFLM 196
L Y+ +V S L ++
Sbjct: 124 LNYLGNPSLVHAQSIIATLACQVIL 148
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K VA S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 68/119 (57%), Gaps = 10/119 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A KP A S + WYGPDR +L G L E P YLTGE PGDYG+D GLS P
Sbjct: 37 AGGKPAASSG-----SPWYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 75/133 (56%), Gaps = 14/133 (10%)
Query: 47 ALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
ALF + + AK+K VA S + WYG DR ++L G L E P YLTGE P
Sbjct: 25 ALFGEARVTMRKTTAKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFP 75
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
GDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKA 134
Query: 164 NLH-FSRSLLLYV 175
FS L Y+
Sbjct: 135 GSQIFSEGGLDYL 147
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V + + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 39 AAGKVADSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|449515811|ref|XP_004164941.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like,
partial [Cucumis sativus]
Length = 149
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 43 FKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEV 102
KPV S+K A A+ + +A + WYG DR ++L G S P YL+GE
Sbjct: 17 LKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL--GPFSGSP-PSYLSGEF 73
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFK 132
Query: 163 VNLH-FSRSLLLYV 175
F+ L Y+
Sbjct: 133 AGSQIFAEGGLDYL 146
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K V+ SP WYGPDR +L E P YL+GE PGDYG+D GLS P
Sbjct: 6 AKPKTVSSSP-------WYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADP 55
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 56 ETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 113
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 46 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 102
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 103 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 152
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + ELIH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 43 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 99
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 100 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 149
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 11/117 (9%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 146
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 86 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 142
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 143 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 183
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 54 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 111 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYL 151
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 63/110 (57%), Gaps = 5/110 (4%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
P + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 PAASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 99 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K G G EAVWFK FS L Y+ +V S C+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 162
Query: 190 LELYFLMETH 199
+ L +E +
Sbjct: 163 VVLMGFIEGY 172
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ A P + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 37 RKTAGKPAASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 93
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 94 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|116785674|gb|ABK23816.1| unknown [Picea sitchensis]
Length = 166
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYL--GPFSE-QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|116788195|gb|ABK24790.1| unknown [Picea sitchensis]
Length = 151
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 18 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 75 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 115
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KP + S + WYGPDR +L E P YLTGE P DYG+D GLS P+
Sbjct: 41 KAKPASSS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
K KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 GKPKPVSSG------SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 91 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ S + WYGP+R +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSS------SPWYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS+ L Y+
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYL 148
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
M + A S+PA M G P+ VS A + F + +K AA P
Sbjct: 1 MTATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK-- 40
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 41 -------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 90
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE K G G EAVWFK
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAG 140
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S + K +P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 43 SNRPRTTAGKLRPATSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWD 92
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FS 168
GLS P+ F+K + E+IH+RWAMLGA G I PE + G G EAVWFK FS
Sbjct: 93 TAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFG-EAVWFKAGSQIFS 151
Query: 169 RSLLLYV 175
L Y+
Sbjct: 152 EGGLDYL 158
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S+K A+ V++ + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRKVGTSEAR---VSMRKSSGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 128
Query: 161 FKVNLH-FSRSLLLYV 175
FK FS L Y+
Sbjct: 129 FKAGAQIFSEGGLDYL 144
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS+ L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSQGGLDYL 146
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 30 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 86
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE K G G EAVWFK FS L Y+ ++ S C+
Sbjct: 87 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 145
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 146 VVLMGLIEGY 155
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+E + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F++ + E+
Sbjct: 48 SESPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 104
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 IHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 151
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 32 KTVGKPKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 88
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 89 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 143
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +FL G L E P YLTGE PGDYG+D G S P F++Y+ E+IHARWA
Sbjct: 42 WYGPDRPLFL--GSLS-GEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWA 98
Query: 135 MLGAAGFIIPEAFNKFGAN-CGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLEL 192
+LGA G + PE + G G A+WFK F L Y+ ++ S L +
Sbjct: 99 LLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAV 158
Query: 193 YFLM 196
++
Sbjct: 159 QVIV 162
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
K KPV+ S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 2 GKPKPVSSS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 52
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 53 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 110
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G E+VWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYL 146
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G E+VWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYL 146
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +FL P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 48 WYGPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 105 MLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYL 146
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 60 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 110
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 111 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 168
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYL 145
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 27 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE K G G EAVWFK F L Y+
Sbjct: 85 AMLGALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYL 126
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE-LAKWYGPDRRIFLP 85
+SA++ S+ + +T KP +K A + + V + WYGPDR P
Sbjct: 3 TSAIQHSS--FAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDR----P 56
Query: 86 EGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G P
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 145 EAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E +K G G EAVWFK FS L Y+
Sbjct: 117 EILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE +K G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 17 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 74 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 114
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V +WYGP+R FL G S P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 18 ATRQVTRASVEWYGPNRPQFL--GPFSGS-TPSYLKGEYPGDYGWDTAGLSADPETFARY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ E+IHARWAMLGA G + PE G EAVWFK F L Y+
Sbjct: 75 RELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYL 127
Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E L PG+ +DP GL+ PD FS+ + EL + R AM+ GF + K G
Sbjct: 164 EGLDALYPGE-AFDPLGLADDPDTFSELKVKELKNGRLAMVSMFGFFVQGIVTKKG 218
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+E L+++YGP+R ++L G L S P YLTGE PGDYG+D GLS P+ F +Y+ E
Sbjct: 46 TSERLSQFYGPERALWL--GPLSGS-APSYLTGEFPGDYGWDSAGLSSDPETFKRYRELE 102
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSC 186
LIHARWAMLGA G + PE K G E VWFK F L Y+ +V S
Sbjct: 103 LIHARWAMLGALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSI 161
Query: 187 FCRLELYFLM 196
L ++
Sbjct: 162 LATLACQVIL 171
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 AKAKPASSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 81/164 (49%), Gaps = 28/164 (17%)
Query: 13 SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEEL 72
SI + M G P+ V S F + +K AA P VA S
Sbjct: 7 SISSTAMAGTPIKVGS--------------FGEGRITMRKTAAKPK----VAASG----- 43
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+ WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 44 SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 100
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
WAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 101 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 143
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELA 73
+ A L +P V AV+ AP AS F + +K A P KPV+ +
Sbjct: 1 MAASMALSSPSLVGKAVKL-APAASE--VFGEGRVSMRKTAGKP---KPVSSG------S 48
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR +L E P YLTGE GDYG+D GLS P+ F+K + E+IHARW
Sbjct: 49 PWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 39 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 95
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 96 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 136
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +KAA +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKAA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-F 167
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK F
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 168 SRSLLLYV 175
S L Y+
Sbjct: 113 SEGGLDYL 120
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L G +P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 24 VTRASVEFYGPDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIE 81
Query: 128 LIHARWAMLGAAGFIIPEAFNKFG-ANCGPEAVWFKVNLH-FSRSLLLYV 175
+IHARWAMLGA G + PE G A+ G AVWFK FS L Y+
Sbjct: 82 VIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYL 131
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGSVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 45 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 142
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE K G G EAVWFK FS L Y+
Sbjct: 93 AMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYL 134
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 142
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 19 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVV 176
MLGA G + PE ++ G G EAVWFK + + +L+ V
Sbjct: 76 MLGALGCVFPELLSRNGVKFG-EAVWFKAAIWACQVILMGAV 116
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----C 188
AMLGA G + PE K G G EAVWFK FS L Y+ ++ S C
Sbjct: 106 AMLGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 165 QVVLMGLIEGY 175
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 80/158 (50%), Gaps = 25/158 (15%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M G P+ VS A + F + +K AA P V+ + WYG
Sbjct: 13 MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK---------VSASGSPWYGS 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|225690798|gb|ACO06085.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 196
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P +LTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 38 SNPSTFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
+ KPV S+K A+ + V+ S ++ + WYG DR FL E
Sbjct: 13 AGQGVLKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPKFLGP---FSGET 67
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 68 PSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 155 GPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 128 G-EAVWFKAGAQIFSEGGLDYL 148
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
S KPV S+K + A+ + V ++ + WYG DR +L E P YLT
Sbjct: 16 SLLKPVNELSRKVGSSEARVTMRRTVKSTSDSI--WYGADRPKYLGP---FSGETPSYLT 70
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 71 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 129
Query: 160 WFKVNLH-FSRSLLLYV 175
WFK FS L Y+
Sbjct: 130 WFKAGAQIFSEGGLDYL 146
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 40 WYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFCR 189
MLGA G I PE K G G EAVWFK F L Y+ ++ +L + C+
Sbjct: 97 MLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQ 155
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 156 VILMGLVEGY 165
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 27 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 83
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 84 MLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 124
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE +K G G EAVWFK
Sbjct: 104 MLGALGCVFPELLSKNGIKFG-EAVWFKAG 132
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLSP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 4/88 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
MLGA G + PE +K G G EAVWFK
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFK 131
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A KP VS + WYGP+R +L E P YLTGE PGDYG+
Sbjct: 44 FTMRKTA----GKPKTVS----SGSPWYGPERVKYLGP---FSGEAPSYLTGEFPGDYGW 92
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-F 167
D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK F
Sbjct: 93 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 151
Query: 168 SRSLLLYV 175
S L Y+
Sbjct: 152 SEGGLDYL 159
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K G G EAVWFK F L Y+ ++ S C+
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 164 VVLMGLIEGY 173
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V V + WYGPDR +L E P YLTGE PGDYG+D GLS P F
Sbjct: 32 KTVGKPKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPKTF 88
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 89 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 143
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 56 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 112
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE +K G G EAVWFK
Sbjct: 113 MLGALGCVFPELLSKNGIKFG-EAVWFKAG 141
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSR 169
MLGA G + PE + G G EAVWFK R
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFR 139
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGP+R +FL GL E P YL GE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 40 FYGPNRPLFL-GGL--SGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+LGA G ++PE + G + VWFKV
Sbjct: 97 LLGALGCVVPELLARNGVAMPADGVWFKV 125
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K + SP WYGPDR ++L G L E P YLTGE GDYG+D GLS P
Sbjct: 39 AKPKAASGSP-------WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVPSG------SPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|693924|gb|AAA80595.1| chlorophyll a/b binding protein, partial [Solanum tuberosum]
Length = 135
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE + G G EAVWFK
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAG 134
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K G G EAVWFK FS L Y+ +V S C+
Sbjct: 105 MLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 190 LELYFLMETH 199
+ L +E +
Sbjct: 164 VVLMGFVEGY 173
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 120
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M G + ++S P ++ + +K A AK KP A + WYG
Sbjct: 1 MAGATMALTSRALVGKPATTSTRDVFGEGRITMRKTA--AKPKPAASG------SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 53 DRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G + PE + G G EAVWFK FS L Y+
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
MLGA G + PE K G G EAVWFK
Sbjct: 108 MLGALGCVTPELLAKNGIKFG-EAVWFK 134
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 3 KTVGKPKVAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 59
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 60 AKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 114
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILARNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 141
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 13/128 (10%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A AK+KPV+ + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA--AKAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGW 81
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-F 167
D GLS P+ F+K + E+IH RWA+L G + PE ++ G G EAVWFKV F
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIF 140
Query: 168 SRSLLLYV 175
S L Y+
Sbjct: 141 SEGGLDYL 148
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 61/104 (58%), Gaps = 10/104 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPA 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
F+K + E+IH RW MLGA G + PE F + G G EAVWFK
Sbjct: 91 TFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFK 133
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 46 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE K G G EAVWFK FS L Y+ +V S C+
Sbjct: 103 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 190 LELYFLMETH 199
+ L +E +
Sbjct: 162 VVLMGFVEGY 171
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 141
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPASSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 57 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 114
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 120
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK F+ L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYL 147
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 70/134 (52%), Gaps = 14/134 (10%)
Query: 68 VNEELAKWYGPDRRIFL----PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
V ++YGPDR FL PE +YLTGE PGDYG+D GLS P FS+Y
Sbjct: 22 VTRAAVEFYGPDRAKFLGPFTPE--------SDYLTGEFPGDYGWDTAGLSADPQTFSRY 73
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVL 182
+ E+IHARWAMLGA G I PE K G G EAVWFK F L Y+ +V
Sbjct: 74 REVEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVH 132
Query: 183 LMSCFCRLELYFLM 196
S L + ++
Sbjct: 133 AQSILATLAVQVIL 146
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 21 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 78 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 118
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 120
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 23 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 79
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 80 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 120
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 464 NLSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIH 521
Query: 131 ARWAMLGAAGFIIPEAFNK-FGANCGPEAVWFKVNL---------HFSRSLLLYVVYLLM 180
RWAMLGA G +PE N+ FG G E +WFK +F + L++ LL
Sbjct: 522 GRWAMLGAVGCFLPEYLNRFFGVQFG-EPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLA 580
Query: 181 VL 182
+L
Sbjct: 581 IL 582
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 45 PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPG 104
PVA+F+ + PA L++WYGPDR +L G + P YL GE+PG
Sbjct: 207 PVAMFAAGGSKAPAG------------LSQWYGPDRSKWL--GPYSDALTPPYLNGELPG 252
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GL P +Y+ ELIH RWAMLGA G + PE ++ E VWFK
Sbjct: 253 DYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAG 312
Query: 165 LH-FSRSLLLYVVYLLMVLLMSCFCRLELYFLM 196
FS L Y+ +V S L L+
Sbjct: 313 AQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 345
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK-FGA 152
+P YLTGE+PGDYG+D GL P +Y+ ELIH RWAMLGA G +PE N+ FG
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 153 NCGPEAVWFKVNL---------HFSRSLLLYVVYLLMVL 182
G E +WFK +F + L++ LL +L
Sbjct: 61 QFG-EPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 98
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 21 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 78 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 118
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 33 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 89
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 130
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 18 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 75 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 115
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 43 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G I PE K+ E VWFK FS+ L Y+ +V S L
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQ 159
Query: 194 FLM 196
L+
Sbjct: 160 VLL 162
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 36 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 92
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 93 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 133
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G PE +K G G EAVWFK FS L Y+
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTG+ PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE +K G N G EAVWFK FS L Y+
Sbjct: 104 MLGALGCFFPEILSKNGVNFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYL 149
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 13/122 (10%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 237 NLSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIH 294
Query: 131 ARWAMLGAAGFIIPEAFNK-FGANCGPEAVWFKVNL---------HFSRSLLLYVVYLLM 180
RWAMLGA G +PE N+ FG G E +WFK +F + L++ LL
Sbjct: 295 GRWAMLGAVGCFLPEYLNRFFGVQFG-EPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLA 353
Query: 181 VL 182
+L
Sbjct: 354 IL 355
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L G + P YL GE+PGDYG+D GL P +Y+ ELIH RWAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELYFLM 196
A G + PE ++ E VWFK FS L Y+ +V S L L+
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 52 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 109 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 149
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G E+VWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYL 146
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 146
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----C 188
AMLGA G PE +K G G EAVWFK FS L Y+ ++ S C
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 189 RLELYFLMETH 199
++ L +E +
Sbjct: 165 QVVLMGFIEGY 175
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
+++ T + + + K + S+K A+ V + + + WYG DR +L
Sbjct: 1 MAACTATHSTALAGQTALKSINELSRKVGNVQAR---VTMRKASSSDSIWYGADRPKYL- 56
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
G L E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE
Sbjct: 57 -GPLS-GETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 146 AFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
K G G EAVWFK FS L Y+
Sbjct: 115 LLAKNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYL 147
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYL 147
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 37 ASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + +P + + A P P+ WYGPDR +L ++
Sbjct: 7 ASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP---FSAQ 63
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRV 123
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
E +WFK FS L Y+
Sbjct: 124 DFKEPIWFKAGAQIFSEGGLDYL 146
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
MLGA G + PE K G G EAVWFK
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFK 133
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK---WYGPDRRIFLPEGLLDRSEIPEY 97
S F+PV S+K S+ VN+ WYG DR FL E P Y
Sbjct: 16 SLFQPVNELSRKVGN--VDSRVTMRRTVNKSAGSDSIWYGADRPKFLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
L GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-E 129
Query: 158 AVWFKVNLH-FSRSLLLYV 175
AVWFK FS L Y+
Sbjct: 130 AVWFKAGAQIFSEGGLDYL 148
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A AK KP A + WYGPDR +L E P YLTGE GDYG+D
Sbjct: 2 SMRKTA--AKPKPAASG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWD 50
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FS 168
GLS P+ F+K + E+IHARWAMLGA G + PE + G G EAVWFK FS
Sbjct: 51 TAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFS 109
Query: 169 RSLLLYV 175
L Y+
Sbjct: 110 EGGLDYL 116
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P Y TGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 145
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L + P YLTGE PGDYG+D GLS P+ F+ Y+ E
Sbjct: 27 VTRAAVEFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELE 83
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
LIHARWAMLGA G + PE +K+ EAVWFK F+ L Y+
Sbjct: 84 LIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYL 132
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L G + P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G E+VWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYL 146
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YL GE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 78/152 (51%), Gaps = 6/152 (3%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A+ + G + S KPV S++ A+ + VS + WYG DR FL
Sbjct: 1 MAAAIAMHSTGLAGQSLLKPVNELSRRVGNVDARVTMRRTVSKSARSDSIWYGADRPKFL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS + F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTP 117
Query: 145 EAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E K G G EAVWFK FS L Y+
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 41 STFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
S KPV S+K A+ + V+ S ++ + WYG DR FL E P Y
Sbjct: 16 SLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPKFLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
L GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-E 129
Query: 158 AVWFKVNLH-FSRSLLLYV 175
AVWFK FS L Y+
Sbjct: 130 AVWFKAGAQIFSEGGLDYL 148
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 113
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK F+ L Y+
Sbjct: 106 MLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYL 146
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S++ A A+ V + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRRVGANEAR---VTMRKSAGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 128
Query: 161 FKVNLH-FSRSLLLYV 175
FK FS L Y+
Sbjct: 129 FKAGAQIFSEGGLDYL 144
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K G G EAVWFK FS L Y+ +V S C+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 164
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 165 VVLMGLIEGY 174
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G E VWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EVVWFKAGSQIFSEGGLDYL 146
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE K G G EAVWFK F+ L Y+
Sbjct: 106 MLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYL 146
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 2 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 58
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 151 GANCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYL 144
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
Query: 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
A L +P AV+ S P AS + V++ +K AA P S SP W
Sbjct: 4 ATMALSSPSFAGQAVKLS-PSASEITGNGRVSM--RKTAAKPVSSS----SP-------W 49
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L E P YLT E PGDYG+D GLS P+ F+K + E+IH RWAM
Sbjct: 50 YGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
LGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|225690800|gb|ACO06086.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 215
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE K G G EAVWFK
Sbjct: 104 MLGALGCVFPEILCKNGLKFG-EAVWFKAG 132
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKAKQVSSS------SPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWF FS L Y+
Sbjct: 85 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYL 142
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 41 STFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
S KPV S+K + A+ + V S ++ + WYG DR +L E P Y
Sbjct: 16 SLLKPVNELSRKVGSSQARVTMRRTVNKSAGSDSI--WYGADRPKYLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
L GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFG-E 129
Query: 158 AVWFKVNLH-FSRSLLLYV 175
AVWFK FS L Y+
Sbjct: 130 AVWFKAGAQIFSEGGLDYL 148
>gi|145078729|tpg|DAA05882.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Euglena gracilis]
Length = 244
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
E+L+ WYGP+R++FL L D + PE+L GE+PGDYG+D GL+ +P +Y+ E
Sbjct: 97 TGEKLSDWYGPNRKLFLGP-LSDGA--PEHLKGELPGDYGFDVLGLATQPTRLERYRQGE 153
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+I+ RWAMLG G I+PE + PE VWFK FS L Y+
Sbjct: 154 IINGRWAMLGIVGCIVPELLARNYGVPFPEPVWFKTGATVFSEEGLNYL 202
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + +P + + + + + P+ WYGPDR +L ++
Sbjct: 10 ASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---FSAQ 66
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 126
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 127 DFKEPVWFKAGAQIFSEGGLDYL 149
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCDFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYL 143
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYL 143
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK F L Y+
Sbjct: 105 MLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYL 145
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKPAASG------SPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 144
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 145
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D LS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 52 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G I PE K+ E VWFK FS L Y+ +V S L
Sbjct: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 168
Query: 194 FLM 196
L+
Sbjct: 169 VLL 171
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLLDR 91
A AS+ + K + K A P + VA+ ++ WYGPDR +L
Sbjct: 5 AATASSTTVVKATPFLGQTKNANPLRDV-VAMGSARFTMSNDLWYGPDRVKYLGP---FS 60
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 61 AQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWV 120
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 121 KVDFKEPVWFKAGSQIFSDGGLDYL 145
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + +P + + + + + P+ WYGPDR +L ++
Sbjct: 10 ASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---FSAQ 66
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 126
Query: 154 CGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 127 DFKEPVWFKAGAQIFSEGGLDYL 149
>gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adiantum capillus-veneris]
Length = 215
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 43 FKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEV 102
KPV S+K A+ + +A + + YG DR ++L G S P YLTGE
Sbjct: 25 LKPVNELSRKVGTSEARVQMMAPKKSSSGNIR-YGADRLLYL--GPFSGSP-PSYLTGEF 80
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 81 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFK 139
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EA WFK FS L Y+
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYL 126
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYL 147
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAV FK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYL 146
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 44 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 101 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 141
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYL 148
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYL 149
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDY +D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 147
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 7 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 63
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 64 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 104
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|515616|emb|CAA43802.1| LHC II Type III chlorophyll a /b binding protein [Brassica napus]
Length = 202
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 27 SSAVRTSAP--GASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SS+V T P G + STF P+ + A K + + WYGPDR +L
Sbjct: 8 SSSVLTPTPFLGQTKGSTFNPL-----RDAVSLGSPKYTMGNDL------WYGPDRVKYL 56
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
+ + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I P
Sbjct: 57 GPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITP 113
Query: 145 EAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E K+ E VWFK FS L Y+
Sbjct: 114 EVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYL 145
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 68/128 (53%), Gaps = 22/128 (17%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 42 WYGPDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVYL 178
MLGA G I PE G E VWFK NL ++S++ V L
Sbjct: 99 MLGALGCITPELLANNGTPI-AEPVWFKAGAQIFQDGGLNYLGNENLVHAQSII--VTLL 155
Query: 179 LMVLLMSC 186
+ V+LM
Sbjct: 156 VQVILMGT 163
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYL 146
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EA WFK FS L Y+
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYL 126
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 103 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYL 144
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 54 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 111 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYL 152
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 6 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYL 104
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EA WFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYL 147
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA--PPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SA A G S + V F + + KS P ++ WYG DR +L
Sbjct: 8 QSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSI---------WYGEDRPKYL 58
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115
Query: 145 EAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E +K G G EAVWFK FS L Y+
Sbjct: 116 EILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
MLGA G I PE K+ E VWFK
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFK 130
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P + A+ S+ G + L +KK A A A S V +E + WY R
Sbjct: 79 PFTLVKAIANSSIG----EQLQQRMLKTKKAAQEAAGEAREAQSNVRDE-SMWYREGRPK 133
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P++L GE PGDYG+D GLS+ P F +Y +E++HARWAML A G +
Sbjct: 134 WLGPIPYD---YPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 143 IPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVYLLMVLLM-- 184
IPE ++FG E VW+KV LH + + + V+ V+LM
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLG 250
Query: 185 ---SCFCRLE 191
+ +C +E
Sbjct: 251 PEYARYCGIE 260
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 GRAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + +IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE GDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K+ E VWFK FS L Y+ +V S C+
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 162 VILMGLVEGY 171
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE GDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 144
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P
Sbjct: 38 GRAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 146
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
S KPV S+K A+ S S ++ + WYG DR +L E P YL
Sbjct: 16 SLLKPVNELSRKVGNVEARISMRKTASKSSDSI--WYGADRPKYLGP---FSGETPSYLN 70
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 71 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAV 129
Query: 160 WFKVNLH-FSRSLLLYV 175
WFK FS L Y+
Sbjct: 130 WFKAGAQIFSEGGLDYL 146
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 47 WYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 104 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYL 145
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 47 WYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 104 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYL 145
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 146
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CR 189
MLGA G + PE +K+ E VWFK FS L Y+ +V S C+
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 190 LELYFLMETH 199
+ L L+E +
Sbjct: 162 VILMGLVEGY 171
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVEFG-EAVWFKAGSQIFSDGGLDYL 146
>gi|190694831|gb|ACE88963.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 181
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE GDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 40 WYGPDRPKYLGP---FSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 97 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 137
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 49 FSKK----KAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
FS+K A PPA+ K A P ++YGP+R +L G + P Y +
Sbjct: 7 FSRKALQVSARPPARRGTGKTAASRPPPAPGIEFYGPNRAKWL--GPYSENATPAYRLAK 64
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVWF
Sbjct: 65 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVWF 123
Query: 162 KVNLH-FSRSLLLYV 175
K FS L Y+
Sbjct: 124 KAGAQIFSEGGLDYL 138
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 63/113 (55%), Gaps = 5/113 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ E+IH+RWAMLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 146
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSDGGLDYL 146
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 147
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----C 188
AMLGA G + PE K G G EAVWFK FS L Y ++ S C
Sbjct: 106 AMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC 164
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 165 QVVLMGLIEGY 175
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 147
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 147
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL+GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYL 147
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 47 WYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 104 MLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYL 145
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSP----VNEELAKWYGPDRRIFLPEGLLDRS 92
AS+ S +P ++ ++ V++ + EL WYGPDR +L +
Sbjct: 10 ASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNEL--WYGPDRVKYLGP---FSA 64
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 65 QTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVK 124
Query: 153 NCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 125 VDFKEPVWFKAGAQIFSEGGLDYL 148
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDY +D GLS P+ F++ + E+IH+RWA
Sbjct: 37 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 94 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 134
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWA
Sbjct: 52 WYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 109 MLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYL 149
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
M GA G + PE ++ G G EAVWFK
Sbjct: 105 MPGALGCVFPELLSRNGVKFG-EAVWFKAG 133
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 21 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 77
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 78 MLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYL 118
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 108 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 149
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+GPD +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 12 WHGPDGVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 68
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 69 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 109
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G I PE K+ E VWFK FS L Y+ +V S L
Sbjct: 103 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 162
Query: 194 FLM 196
L+
Sbjct: 163 VLL 165
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 148
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S F+ L SK ++ S VS + + WYG DR +L E P YL G
Sbjct: 16 SLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPKWLGP---FSGETPSYLNG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 131
Query: 161 FKVNLH-FSRSLLLYV 175
FK FS L Y+
Sbjct: 132 FKAGAQIFSEGGLDYL 147
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG++ G+S P+ F++ + E+IH+RWA
Sbjct: 13 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWA 69
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 70 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYL 110
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYL 147
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLELY 193
MLGA G + PE K+ E VWFK FS L Y+ +V S L
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 194 FLM 196
L+
Sbjct: 167 VLL 169
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 9/129 (6%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----CRL 190
LGA G + PE +K G G EAVWFK FS L Y+ +V S C++
Sbjct: 61 LGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 119
Query: 191 ELYFLMETH 199
L +E +
Sbjct: 120 VLMGFIEGY 128
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 145
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 142
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S + S + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPKYL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 117
Query: 145 EAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
E K G G EAVWFK FS L Y+
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 38 EFYGPNRAKWLGP---FSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMV----LLMSCFC 188
AMLGA G I PE K G G EAVWFK F L Y+ ++ +L + C
Sbjct: 95 AMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 154 QVILMGLVEGY 164
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 32 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 88
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 89 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 129
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 142
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 13 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 69
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E +WFK FS L Y+
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYL 111
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWA
Sbjct: 51 WYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 108 MLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYL 148
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F++ E+IH RWA
Sbjct: 49 WYGEDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGP+R +L G +S P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPNRAGYL--GPFTKS--PSYLNGEYPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+IHARWAMLGA G + PE K G + G EAVW+K
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWWK 118
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 72/131 (54%), Gaps = 11/131 (8%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 10 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 65
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCF----C 188
AMLGA G + PE K G G EAVWFK FS L Y+ ++ S C
Sbjct: 66 AMLGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 124
Query: 189 RLELYFLMETH 199
++ L L+E +
Sbjct: 125 QVVLMGLIEGY 135
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 16 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 113
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
LGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 61 LGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYL 100
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 28 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 84
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 85 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYL 125
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYG 142
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++V
Sbjct: 143 FDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRV 198
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG
Sbjct: 86 LEKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYG 142
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV---- 163
+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++V
Sbjct: 143 FDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSK 202
Query: 164 ------------NLHFSRSLLLYVVYLLMVLLM-----SCFCRLE 191
LH + S + V+ + +LM + +C +E
Sbjct: 203 LKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE 247
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE GDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 106 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYL 147
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 31/191 (16%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ + + +KWYG +R R
Sbjct: 59 PFTAVKAIANSSIGVSLRRRLE-----EKKKEAVENSSRFKSKAQEARNDSKWYGKERPR 113
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
F P + P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G
Sbjct: 114 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 169
Query: 142 IIPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVYLLMVLLM- 184
+IPE F+ G E VW++V LH + S + V+ + VLLM
Sbjct: 170 LIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMV 229
Query: 185 ----SCFCRLE 191
+ +C +E
Sbjct: 230 GPEYARYCGIE 240
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L P YL+GE PGDYG+D GLS P+ F+KY+ E+IHARWA
Sbjct: 19 WYGEDRPKWLGP---FSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE K G + G EAVW+K
Sbjct: 76 MLGALGCLTPELLAKNGVSFG-EAVWWKAG 104
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYL 146
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYL 146
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDY 106
L KKK A S+ A + +KWYG +R R F P + P YLTGE+PGDY
Sbjct: 82 LEEKKKEAVENSSRFKAKAQEARNDSKWYGKERPRWFGPIPY----DYPPYLTGELPGDY 137
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV--- 163
G+D GL K F KY +E++HARWAML A G +IPE + GA E VW++V
Sbjct: 138 GFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFHFAEPVWWRVGYS 197
Query: 164 -------------NLHFSRSLLLYVVYLLMVLLM-----SCFCRLE 191
LH + S + V+ + VLLM + +C +E
Sbjct: 198 KLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIE 243
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+LGA G I PE K+ E VWFK FS L Y+
Sbjct: 108 LLGALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYL 149
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G + P Y TGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 49 WYGEDRPKYL--GPFSE-QTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE +K G G EAVWFK FS L Y+
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWA 134
YGP RR FLP+G PE+L G + GD G+DP GL S P D +Y+ EL+H RWA
Sbjct: 176 YGPTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWA 233
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLG G +PEA +FG E VW+KV
Sbjct: 234 MLGVVGAAVPEALARFGGLELGEPVWWKVG 263
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK F+ L Y+
Sbjct: 103 MLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYL 144
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G RS P YL GE PGDYG+D GLS P+ FS+Y+ E+IHARWA
Sbjct: 66 WYGADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWA 121
Query: 135 MLGAAGFIIPEAFNK 149
MLGA G ++PE ++
Sbjct: 122 MLGALGIVVPELLDQ 136
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PG+YG+D GLS P+ F+K +A E+IH RWA
Sbjct: 3 WYGPDRVKYLGP---FSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWA 59
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G I PE K+ E VWFK FS L Y+
Sbjct: 60 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYL 101
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 87/181 (48%), Gaps = 20/181 (11%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA +P SS S GA+ S L K AP S
Sbjct: 1 MASACASSTIAAV-----AFSSP---SSQKNGSIVGATKASFLGGKRLRVSKFIAP-VGS 51
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VAVS V + PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 52 RSVAVSAVAAD------PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESL 100
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
EL+H+RWAMLGAAG IPE K G P +F+ + L+V+ L++
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVL 160
Query: 181 V 181
+
Sbjct: 161 I 161
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 41
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGP R FL G P YLTGE PGDYG+D GLS P F++Y+ E+IHARW
Sbjct: 37 SWYGPSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G ++PE + G N WF FS L Y+
Sbjct: 95 AMLGALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYL 132
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 8/93 (8%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYGP R R+ P G E+L G + GD G+DP GLSK+ F+KYQ EL+HA
Sbjct: 175 SKWYGPSRPRLPGPLG------SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHA 228
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
RWAMLG G ++PE G + G E VW+KV
Sbjct: 229 RWAMLGVVGCLVPELLALRGVDLG-EPVWWKVG 260
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 26/139 (18%)
Query: 75 WYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P L S E P YLTGE+PGDYG+D GL + P KY +E++HARW
Sbjct: 105 WYGEDR----PRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARW 160
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVY 177
AML + G +IPE + GA E VW++V LHF+ S + V+
Sbjct: 161 AMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIA 220
Query: 178 LLMVLLM-----SCFCRLE 191
+ LLM + +C +E
Sbjct: 221 ICQALLMVGPEYARYCGIE 239
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPDR +L + P YLTGE PGDYG+D GLS P+ F++Y+ E+IHARW
Sbjct: 31 EFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARW 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYLLMVLLMSCFCRLEL 192
AMLGA G I PE A E VWFK FS L Y+ +V S L +
Sbjct: 88 AMLGALGCITPELIGGDIA----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAV 143
Query: 193 YFLM 196
++
Sbjct: 144 QVIL 147
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 41
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTGE PGDYG+D GLS P+ F++ + ++IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 41
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKT 41
>gi|193872610|gb|ACF23033.1| ST140, partial [Eutrema halophilum]
Length = 141
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G E P YLTGE PG+YG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYL--GPFS-GEPPSYLTGEFPGNYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G + PE + G G +AVWFK
Sbjct: 107 MLGALGCVFPELLARNGVKFG-KAVWFKAG 135
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L G E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+ E+IH+RWAMLGA G + PE + G G EAVW +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWVQ 132
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYG +R +L +S P YLTGE PGDYG+D GLS P F Y+ E+IHARW
Sbjct: 88 EWYGENRPKYLGP---FQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARW 144
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
AMLGA G I PE N G N VWFK
Sbjct: 145 AMLGALGCIFPELLNSAGFNL---PVWFK 170
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 18/112 (16%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
AMLGA G + PE +K G + F ++ + ++ V+LM
Sbjct: 69 AMLGALGCVFPEILSKNG-------------VKFGEAVCILAIWACQVVLMG 107
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 45/51 (88%), Gaps = 5/51 (9%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLL 173
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK +R+LLL
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFK-----TRALLL 46
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS L K KA+ PA S+ A+ V A P+R I+ P S PE+L
Sbjct: 22 PSFLGGKKLRLKNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLD 71
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP GLS PD EL+H RWAMLGAAG IPE K G P
Sbjct: 72 GSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 131
Query: 160 WFKVNLHFSRSLLLYVVYLLMV 181
+F+ L+VV L+++
Sbjct: 132 TAGEQEYFTDKTTLFVVELILI 153
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
SS + S GA+ S L +K +P S+ V V V + PDR ++ P
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVAD-------PDRPLWFPG 71
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE
Sbjct: 72 -----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEF 126
Query: 147 FNKFGANCGPEAVWFKVNL--HFSRSLLLYVVYLLMV 181
K G P W+ +F+ + L+++ L+ +
Sbjct: 127 LTKIGILNTPS--WYDAGKLEYFTDTTTLFIIELIFI 161
>gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia faba]
Length = 136
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 46 WYGPDRPKYL--GPFS-EQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAV 159
MLGA G PE K G G V
Sbjct: 103 MLGALGCTFPELLEKNGVKFGEATV 127
>gi|212721622|ref|NP_001132387.1| light harvesting complex mesophyll7 [Zea mays]
gi|194694246|gb|ACF81207.1| unknown [Zea mays]
Length = 185
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPE 145
MLGA G + PE
Sbjct: 107 MLGALGCVFPE 117
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS L K KA+ PA S+ A+ V A P+R I+ P S PE+L
Sbjct: 16 PSFLGGKKLRLKNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLD 65
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD+G+DP GLS PD EL+H RWAMLGAAG IPE K G P
Sbjct: 66 GSLPGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWY 125
Query: 160 WFKVNLHFSRSLLLYVVYLLMV 181
+F+ L+VV L+++
Sbjct: 126 TAGEQEYFTDKTTLFVVELILI 147
>gi|2570511|gb|AAB82141.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 304
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVNYL--GPFS-AQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKF 150
MLGA G I PE K+
Sbjct: 105 MLGALGCITPEVLEKW 120
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTG+ PGDYG+D GLS P+ F + + E+IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|169261108|gb|ACA52202.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 118
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 38 WYGPDRVKYL--GPFS-GEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 94
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAV 159
MLGA G + PE + G G EAV
Sbjct: 95 MLGALGCVFPELLARNGVKFG-EAV 118
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD EL+H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ L+VV L+++
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILI 148
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PEYLTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 95 WYGGDRPRWLGPVPYD---YPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
ML A G ++PE + FG E VW+KV
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVG 181
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 237 YLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKG 293
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDY 106
L +KK A SK A++ + + WYG +R P L S + P YL+GE+PGDY
Sbjct: 89 LEERKKLAVQQSSKFKALAQKARKESFWYGEER----PRWLGPISYQYPTYLSGELPGDY 144
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
G+D GL++ P F +Y +E++HARWAML A G +IPE + GA E VW++V
Sbjct: 145 GFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVG 202
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP LSK P F + + E+ + R AM+ GF I A G
Sbjct: 258 YLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKG 314
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G
Sbjct: 36 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNG 95
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 96 VKFG-EAVWFKAGAQIFSEGGLDYL 119
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 38/41 (92%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKT 41
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 158 AVWFKVN 164
+VWF+
Sbjct: 61 SVWFRAG 67
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ L+VV L+++
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILI 148
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ L+VV L+++
Sbjct: 105 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILI 148
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P ++ + SP WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPAR--SGSP-------WYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA+
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVG 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVN 164
G + PE + G G E VWFK
Sbjct: 109 LGCVFPELLARNGVKFG-EGVWFKAG 133
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 7 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 66
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 67 VKFG-EAVWFKAGAQIFSEGGLDYL 90
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 39/41 (95%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 32 TSAPGASNPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLL 89
T+ +N S K + + K AA ++S A + + W+G DR +L
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE K
Sbjct: 114 D---YPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEK 170
Query: 150 FGANCGPEAVWFKVN 164
F E+VW++V
Sbjct: 171 FFGVNFAESVWWRVG 185
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + + E+ + R AM+ GF + K G
Sbjct: 241 YLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKG 297
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PE+LTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 94 WYGGDRPRWLGPVPYD---YPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
ML A G +IPE + FG E VW+KV
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVG 180
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 236 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 292
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 73 AKWYGPDRRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG RR FLP+ LL + +P YLTGE+PGD G+DP + + D +K + EL
Sbjct: 1313 ADLYGTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQ-RDLTKLREREL 1371
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHF 167
IH RWAML A G + PE K G P + W+ ++F
Sbjct: 1372 IHGRWAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINF 1410
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 32 TSAPGASNPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLL 89
T+ +N S K + + K AA ++S A + + W+G DR +L
Sbjct: 54 TAVKAIANSSLGKQLQERMQETKAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPY 113
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE K
Sbjct: 114 D---YPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEK 170
Query: 150 FGANCGPEAVWFKVN 164
F E+VW++V
Sbjct: 171 FFGVKFAESVWWRVG 185
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + + E+ + R AM+ GF + K G
Sbjct: 241 YLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKG 297
>gi|169261106|gb|ACA52201.1| chloroplast chlorophyll A/B-binding protein [Oenothera elata subsp.
hookeri]
Length = 119
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPE 145
MLGA G + PE
Sbjct: 108 MLGALGCVFPE 118
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G
Sbjct: 4 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNG 63
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
G EAVWFK FS L Y+
Sbjct: 64 VKFG-EAVWFKAGSQIFSEGGLDYL 87
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+++
Sbjct: 118 AAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLI 161
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ L+VV L+++
Sbjct: 104 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILI 147
>gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 155
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 57 PAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 116
PAK K V+ P A+WYGPDR +L P YLTGE PGDYG+D GLS
Sbjct: 45 PAK-KTVSKKPSGPAGAEWYGPDRPKWLGPFF---QNTPSYLTGEFPGDYGWDTAGLSAT 100
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
D KY+ E+IH RW MLGA G ++PE A E VWFK FS L Y+
Sbjct: 101 -GDLRKYRTIEVIHGRWPMLGALGCLVPELIKGDIA----EPVWFKAGAQIFSEGGLDYL 155
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 38/41 (92%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 38/41 (92%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFK
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKT 41
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+G R ++L G L ++ P++L+GE+PGDYG+DP GL + P +Y EL+HARWA
Sbjct: 123 WFGAARPLWL--GPLS-TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWA 179
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
MLGA G ++PE G+ E W+ V
Sbjct: 180 MLGALGAVVPELLQLAGSATFLEDRWWNVG 209
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 79/166 (47%), Gaps = 14/166 (8%)
Query: 19 MLGNPLNVSSAVRTSA-PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
MLG N SS +A PGA S+F A S + A+S S A
Sbjct: 1 MLGLVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA---- 56
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DP GL P+ +L+H RWAMLG
Sbjct: 57 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLG 111
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLH--FSRSLLLYVVYLLMV 181
AAG IPE K G P W+ H F+ + L+++ L+++
Sbjct: 112 AAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLFIIELILI 155
>gi|86169487|gb|ABC86983.1| chlorophyll a/b binding protein [Brassica napus]
Length = 75
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 2 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 61
Query: 152 ANCGPEAVWFKVN 164
G EAVWFK
Sbjct: 62 VKFG-EAVWFKAG 73
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + +YGP+R ++ +G ++PEYL GE PGDYG D F L + P++++K
Sbjct: 2 SVAPSQDTRTAYYGPNRPLW--KGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK 59
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
++ EL++ RWAMLG G ++PE N G E VWFK FS + + Y+
Sbjct: 60 LRSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYL 112
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DPFGL+K P DF+K++ E+ H RWAMLG G ++PE F G
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLG 217
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DP GL+K P+DF+K + E+ H RWAMLG G ++PE F G
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
>gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 118
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRPKYL--GPFS-EQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNK 149
MLGA G + PE ++
Sbjct: 104 MLGALGCVFPEILSR 118
>gi|413933709|gb|AFW68260.1| hypothetical protein ZEAMMB73_510715 [Zea mays]
Length = 144
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WY PDR P+ L SE YLTGE PGDYG+D GLS + F++ + E+IH+ W
Sbjct: 44 WYDPDR----PKYLAPFSEQTSSYLTGEFPGDYGWDTAGLSADHETFARNRELEVIHSWW 99
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYVVYL 178
AMLGA G + PE K G E VWFK FS L Y+V L
Sbjct: 100 AMLGALGCVFPEVLAKNDVKFG-EVVWFKAGAQIFSEGGLDYLVLL 144
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 9/105 (8%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AG IPE K G P W+K +F+ L++V LL++
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAGDATYFADQGTLFIVELLLM 161
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 64 DRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
AG IPEA K G P +F+ + L+V+ +++
Sbjct: 119 AGIFIPEALTKAGILNTPSWTVAGDQQYFTDATTLFVIEIIL 160
>gi|16225450|gb|AAL15892.1|AF417304_1 putative chlorophyll-A-B-binding protein [Castanea sativa]
Length = 120
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G + P YLTGE P DYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYL--GPFSE-QTPSYLTGEFPEDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNK 149
MLGA G + PE +K
Sbjct: 106 MLGALGCVFPEILSK 120
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DPFGL P+ EL+H RWAMLG
Sbjct: 55 PDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L+++ L+++
Sbjct: 110 AAGIFIPEFLTKIGILSTPSWYTAGEQQYFTDTTTLFIIELILI 153
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 9/105 (8%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 13 DRPLWLP-----GSEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AG IPE K G P W+K +F+ L++V LL++
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAGDATYFADQGTLFIVELLLM 110
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG R +L G L R + PE+L GE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 90 WYGGARPRWL--GPL-RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 146
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
ML A G ++PE + FG E VW+KV
Sbjct: 147 MLAALGVVVPELLDLFGIVHFVEPVWWKVG 176
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F +++ E+ + R AM+ GF I A G
Sbjct: 232 YLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKG 288
>gi|93359558|gb|ABF13305.1| chloroplast chlorophyll a/b binding protein [Phaseolus vulgaris]
Length = 134
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 4 AQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWL 63
Query: 152 ANCGPEAVWFKVNLH-FSRSLLLYV 175
E VWFK FS L Y+
Sbjct: 64 RVDFKEPVWFKAGAQIFSEGGLDYL 88
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS+ ASS AA ++ SS S GA+ S L KK AP A +
Sbjct: 1 MASVCASSAMAAVA--------TISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGT 52
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VS + P+R ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 53 RSFTVSAAAAD------PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETL 101
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYL 178
E++H RWAMLGAAG IPE K G P W+ +F+ L++V +
Sbjct: 102 KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDKTTLFIVEM 159
Query: 179 LMV 181
+ +
Sbjct: 160 IFI 162
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
F+ Y +E++H RWAML A G ++PE + FG E VW+KV
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVG 187
Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 243 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 299
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 26 VSSAVRTSA----PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
VS++ T+A PGA+ S+F A S + A+S S A PDR
Sbjct: 4 VSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA----PDRP 59
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG
Sbjct: 60 IWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGI 114
Query: 142 IIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
IPE K G P +F+ + L+++ L+++
Sbjct: 115 FIPEFLTKIGILNTPSWYTAGEQQYFTDTTTLFIIELILI 154
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS P+ E++H RWAMLG
Sbjct: 49 PERPIWFP-----GSTPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ L+VV L+++
Sbjct: 104 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILI 147
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLG
Sbjct: 64 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 118
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L++V L+ +
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFIVELIFI 162
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 56 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+++ L+++
Sbjct: 111 AAGIFIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLFIIELILI 154
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 123 APQ--WYDAGKSEYFASSSTLFVIEFIL 148
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 153 NCGPEAVWFKVN 164
E VW+KV
Sbjct: 61 VHFVEPVWWKVG 72
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K++AA +S V V E PDR ++ P S P +L G +PGD+G+DP
Sbjct: 40 KERAAIGGRSMGTTVCAVAE-------PDRPLWFPG-----STPPPWLDGTLPGDFGFDP 87
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFS 168
GL P+ EL+H RWAMLGAAG IPE K G P W+ +F+
Sbjct: 88 LGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPS--WYSAGELEYFT 145
Query: 169 RSLLLYVVYLLMV 181
+ L++V L +
Sbjct: 146 DTTTLFIVELFFI 158
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+ +
Sbjct: 117 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFI 160
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 7/163 (4%)
Query: 9 TPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPV 68
+P +S + G P ++ S+ + S +A +S AA S AV
Sbjct: 1176 SPQSSKASAGTEGRPRDLVSSSMNANAATSLGGDQGSMAYWSNGSAALVVTS---AVRNT 1232
Query: 69 NEELAKWYGPDRRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+ YG R+ FLP LL+ + +P YLTGE+PGD G+DP + + D K +
Sbjct: 1233 GARVDDLYGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQ-RDIMKLRE 1291
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFS 168
ELIH RWAML A G ++PE+ + P W+ ++ ++
Sbjct: 1292 RELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWT 1334
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+ +
Sbjct: 116 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFI 159
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD-FSKYQAYELIHARW 133
WYGPDR +L + + P Y TGE PGDYG+D GLS P+ F+K A E+I+ RW
Sbjct: 47 WYGPDRVKYLGPFSV---QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRW 103
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
AMLGA G I PE K+ E VWFK FS L Y+
Sbjct: 104 AMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYL 146
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+ +
Sbjct: 116 AAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFI 159
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 152 ANCGPEAVWFKVNLHFSRS 170
E VW+K S
Sbjct: 69 FTF-QEPVWWKAGAQILSS 86
>gi|449527935|ref|XP_004170963.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like, partial [Cucumis sativus]
Length = 117
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFI 142
MLGA G +
Sbjct: 106 MLGALGCV 113
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 46 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 100
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L+VV L+++
Sbjct: 101 AAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFVVELILI 144
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S PE+L G +PGD+G+DP GL +P+ + E++H RWAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 152 ANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
P W+ +F+ L++V LL +
Sbjct: 128 ILNTPS--WYTAGEQTYFADQTTLFIVELLFM 157
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YG +R FL G L+ E P +L G + GD G+DP L+ K +D +Y+ EL+H RWA
Sbjct: 31 FYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWA 87
Query: 135 MLGAAGFIIPEAFNKFG-ANCGPEAVWFKVN 164
MLG G +PE ++FG AN G E VW+KV
Sbjct: 88 MLGVVGAAVPETLDRFGVANLG-EPVWWKVG 117
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 153 NCGPEAVWFKVN 164
E VW+KV
Sbjct: 100 VHFVEPVWWKVG 111
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 167 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 223
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 51 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 105
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+++
Sbjct: 106 AAGIFIPELLTKIGILNTPSWYTAGEQTYFADTTTLFIVELILI 149
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 153 NCGPEAVWFKVN 164
E VW+KV
Sbjct: 173 VHFVEPVWWKVG 184
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + + E+ + R AM+ GF + A G
Sbjct: 240 YLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAVTGKG 296
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A PV+ SP WYGPDR +L E P YLTGE P G P P
Sbjct: 40 ATKAPVSSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPVTTGGTPPVCQPDP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ F+K + E+IHARWAMLGA G + PE ++ G G EAVWFK FS L Y+
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+ +
Sbjct: 117 AAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFI 160
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 48 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 102
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+++
Sbjct: 103 AAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELILI 146
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDR-SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + A +YGP+R ++ +G + ++PEYL GE PGDYG D F L++ P ++++
Sbjct: 14 SVAPDQDARAPYYGPNRPLW--KGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYAR 71
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
+ EL++ RWAMLG G + PE N + G E VWF FS + + Y+
Sbjct: 72 LRTQELMNGRWAMLGITGCLTPELINS-NSTPGFEPVWFNTGAQIFSDAGIDYL 124
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 1 DRPLWFP-----GSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
AG IPEA K G P +F+ L+V+ L++
Sbjct: 56 AGIFIPEALTKAGILNTPSWNVAGDQQYFADPTTLFVIELIL 97
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+++ L+++
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLFIIELILI 151
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
AAG IPE K G P +F+ + L++V L+ +
Sbjct: 117 AAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFI 160
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 120 APQ--WYDAGKAEYFASSSTLFVIEFIL 145
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 APQ--WYDAGKAEYFASSSTLFVIEFIL 148
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+++ L+++
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLFIIELILI 151
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 44 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWF 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL--HFSRSLLLYVVYLLMV 181
ELIH RWAML AAG +IPE + G WF +F+ L+VV L+++
Sbjct: 95 AQAELIHGRWAMLAAAGILIPEWLERLGFI--DNFNWFDAGTREYFADPTTLFVVQLILM 152
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 62/120 (51%), Gaps = 13/120 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 44 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWF 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL--HFSRSLLLYVVYLLMV 181
ELIH RWAML AAG +IPE + G WF +F+ L+VV L+++
Sbjct: 95 AQAELIHGRWAMLAAAGILIPEWLERLGFI--DNFNWFDAGTREYFADPTTLFVVQLILM 152
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 123 APQ--WYDAGKSEYFASSSTLFVIEFIL 148
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S+ K A + K +A + + + WYG +R +L G L + P YL G PGDY YD
Sbjct: 46 SEYKRAEQQREKELAAA---RDESPWYGEERPKWL--GPL-SYDYPAYLRGGAPGDYAYD 99
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
P L++ D F +Y +EL+HARWAMLGA G IPE G + EA W+ V
Sbjct: 100 PLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAVG 154
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+++ L+++
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLFIIELILI 151
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
F+ Y +E++H RWAML A G ++PE + F E VW+KV
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVG 187
Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
YL G++ PG +DP GLSK P F + E+ + R AM+ GF I A G
Sbjct: 243 YLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 299
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 158 AVWFKVNLH-FSRSLLLYV 175
VWFK FS L Y+
Sbjct: 61 PVWFKAGAQIFSEGGLDYL 79
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Query: 31 RTSAPGASNP--STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
+ + P NP ST A F+ K A AKSK S + K+ GP
Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHA--AKSK--VSSSTCDRRVKYLGPFS-------- 66
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE +
Sbjct: 67 ---GEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123
Query: 149 KFGANCGPEAVWFKVNLH-FSRSLLLYV 175
G G EAVWFK FS L Y+
Sbjct: 124 VMGQGFG-EAVWFKAGAQIFSEGGLDYL 150
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P +W+ + +F+ S L+V+ ++
Sbjct: 116 AP--LWYDAGKSTYFASSSTLFVIEFIL 141
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKVNLHFSRSLLLYVVYLLMV 181
P +F+ + L++V L+ +
Sbjct: 61 TPSWYTAGEQEYFTDTTTLFIVELVFI 87
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 1 MASLAASSTPAA-SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK 59
MAS+ ASS AA SI + + + +T S ++F KK P
Sbjct: 1 MASVCASSAIAAVSISSSRQV-------LSQKTGFLVGSTKASFLSGKKLRLKKYTAPTA 53
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
++ V V + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 54 ARSVTVCVAAD-------PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 101
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVY 177
EL+H RWAMLGAAG IPE K G P W+ +F+ + L++V
Sbjct: 102 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFIVE 159
Query: 178 LLMV 181
L +
Sbjct: 160 LFFI 163
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLGA
Sbjct: 64 DRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
AG IPE K G P W+ +F+ + L+++ L+++
Sbjct: 119 AGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLFIIELILI 161
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+VV L +
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFVVELFFI 161
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 APQ--WYDAGKAEYFASSSTLFVIEFIL 148
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L++V L +
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFIVELFFI 161
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
SEIP YL GE+PGD+G+DP L + P YQ EL + RWAML AAG + + G
Sbjct: 45 SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLG 104
Query: 152 ANCGPEAV--WFKVN--LHFSRSLLLYVVYLLM 180
A GP A WFK + +F+ + L++V LL+
Sbjct: 105 AG-GPAAATPWFKASDFTYFAPTSTLFIVELLL 136
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ S L+V+ ++
Sbjct: 125 -WYDAGKAEYFASSSTLFVIEFIL 147
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 57 PAKSKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSK 115
PAK +PV+ +P P R+ +G L P+YL G +PGD G+DP GL++
Sbjct: 27 PAKLRPVSRNPSASRAV----PAFRVSAKKGEWLPGLASPDYLNGSLPGDNGFDPLGLAE 82
Query: 116 KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV--NLHFSRSLLL 173
P++ + EL + RWAMLG AG ++PE F K G P+ W+ +F+ S L
Sbjct: 83 DPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGIINAPQ--WYDAGKQEYFASSSTL 140
Query: 174 YVVYLLM 180
+V+ ++
Sbjct: 141 FVIEFIL 147
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
KK P ++ V V + PDR ++ P S P +L G +PGD+G+DP
Sbjct: 43 KKYTAPTAARSVTVCVAAD-------PDRPLWFPG-----STPPPWLDGSLPGDFGFDPL 90
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSR 169
GL P+ EL+H RWAMLGAAG IPE K G P W+ +F+
Sbjct: 91 GLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTD 148
Query: 170 SLLLYVVYLLMV 181
+ L++V L +
Sbjct: 149 TTTLFIVELFFI 160
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 138 AAGFIIPEAFNKFG 151
G IIPE + G
Sbjct: 118 VTGIIIPECLERLG 131
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 22/178 (12%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAV--SPV 68
A+++ AK +G+ SS+ + ++ S F AL K AA ++ +P
Sbjct: 2 ASAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQ 61
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL------SKKPDDFSK 122
NE R ++ P S+ PE+L G +PGD+G+DP GL P+
Sbjct: 62 NE---------RPLWFPG-----SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKW 107
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
+ EL+H RWAMLGAAG IPEA K G P +F+ L+V+ L++
Sbjct: 108 FVQAELVHCRWAMLGAAGIFIPEALTKMGILNTPSWTVAGDADYFTDKTTLFVIELIL 165
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+V+ ++
Sbjct: 125 VPE--WYDAGKEQYFASSSTLFVIEFIL 150
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ S L+V+ ++
Sbjct: 125 -WYDAGKAEYFASSSTLFVIEFIL 147
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 138 AAGFIIPEAFNKFG 151
G IIPE + G
Sbjct: 118 VTGIIIPECLERLG 131
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 63 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 117
Query: 138 AAGFIIPEAFNKFG 151
G IIPE + G
Sbjct: 118 VTGIIIPECLERLG 131
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+V+ ++
Sbjct: 124 VPE--WYDAGKEQYFASSSTLFVIEFIL 149
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 25 NVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 12 SIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLWF 63
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AAG ++P
Sbjct: 64 PG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVP 118
Query: 145 EAFNKFG 151
E K+G
Sbjct: 119 EVLEKWG 125
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L+VV L +
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFVVELFFI 172
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++PGD G+DP GL++ P++ Y EL++ RWAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
PE W+ + +F+ S L+VV ++
Sbjct: 116 APE--WYDAGKSTYFASSSTLFVVEFIL 141
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L++V L +
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLFIVELFFI 172
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L++V L +
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLFIVELFFI 160
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
AAG IPE K G P W+ +F+ + L++V L +
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLFIVELFFI 160
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P++L GE+PGDYG+DP L K+P D Y EL H RWAMLG AG PE K G
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
Query: 153 NCGPEAVWFKV---NLHFSRSLLLYVVYLLMV 181
+ P W +F+ + L+ V +LM+
Sbjct: 101 SDLPN--WHDAPNYQGYFTDATTLFWVQMLMM 130
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKSEYFASSSTLFVIEFIL 141
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKSEYFASSSTLFVIEFIL 141
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 160 WFKVNLH-FSRSLLLYV 175
WFK FS L Y+
Sbjct: 60 WFKAGAQIFSEGGLDYL 76
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKSEYFASSSTLFVIEFIL 141
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ PD Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 122 VPK--WYDAGKVEYFASSSTLFVIEFIL 147
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+RWAML
Sbjct: 62 PDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLA 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKVNL--HFSRSLLLYVVYLLMV 181
G +IPE + G W++ +F+ S L+V ++++
Sbjct: 117 VTGILIPECLERLGFI--ENFSWYEAGSREYFADSTTLFVAQMVLM 160
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 64 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 123
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 124 APQ--WYDAGKSEYFASSSTLFVIEFIL 149
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKATYFASSSTLFVIEFIL 141
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L GPDR ++ P + P +L G +PGD+G+DP GL +P+ +
Sbjct: 55 GVSAVCEPL----GPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWF 105
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG +IPE K+G
Sbjct: 106 AQAELMHSRWAMLAVAGILIPEILQKWG 133
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 9/143 (6%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
+ F+P A S+ + P+K ++ VA P++ A + ++ GL P YL
Sbjct: 11 AVFRPCASKSRFLSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPS----PAYLN 66
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 67 GSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPK-- 124
Query: 160 WFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ S L+V+ ++
Sbjct: 125 WYDAGKEEYFASSSTLFVIEFIL 147
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
YQAYELIHARWA+L AAGF+ P AFNKFG+ CGPEA+W+K
Sbjct: 34 YQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKT 74
Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
+DP GL+K PD F+ + E+++ R AM GF +
Sbjct: 133 FDPLGLAKDPDQFALLKVKEIMNGRLAMFSMLGFFV 168
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKATYFASSSTLFVIEFIL 141
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKATYFASSSTLFVIEFIL 141
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ EL+HARWAML AG ++PE F G
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG 126
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKATYFASSSTLFVIEFIL 141
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 25 NVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 12 SIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLWF 63
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AG ++P
Sbjct: 64 PG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVP 118
Query: 145 EAFNKFG 151
E K+G
Sbjct: 119 EVLEKWG 125
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ EL+HARWAML AG ++PE F G
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLG 126
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKATYFASSNTLFVIEFIL 141
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 161 FKVNLH-FSRSLLLYV 175
FK FS L Y+
Sbjct: 60 FKAGSQIFSEGGLDYL 75
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR
Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARC 111
Query: 134 AMLGAAGFIIPEAF-NKFGANCGPEAVWFKV 163
+LGA G + PE ++ G G A+WFK
Sbjct: 112 GLLGALGMVTPELLADEDGIKFGDAAIWFKA 142
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 116 APQ--WYDAGKSTYFASSSTLFVIEFIL 141
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
P W+ +F+ L++V ++++
Sbjct: 133 TP--FWYTAGEQEYFTDQTTLFIVEMILL 159
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
L KK A SK A++ + + WYG +R +L D P YLTGE+PGDYG
Sbjct: 80 LEESKKVAVKESSKFQALTAKARKESLWYGEERPRWLGPIPYD---YPAYLTGELPGDYG 136
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV---- 163
+D GLSK F +Y +E++HARWAML A G + PE + GA E VW++V
Sbjct: 137 FDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSK 196
Query: 164 ------------NLHFSRSLLLYVVYLLMVLLM-----SCFCRLE 191
LHF+ S + V+ + LLM + +C +E
Sbjct: 197 LKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARYCGIE 241
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLMV 181
P W+ +F+ L++V ++++
Sbjct: 133 TP--FWYTAGEQEYFTDQTTLFIVEMILL 159
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+HARWAMLG +G +IPE K G
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIG 128
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 VPK--WYDAGKEEYFASSSTLFVIEFIL 148
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 55 APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
AP A ++ VS + P+R ++ P S P +L G +PGD+G+DP GL
Sbjct: 48 APAAGTRSFTVSAAAAD------PNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLG 96
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLL 172
P+ E++H RWAMLGAAG IPE K G P W+ +F+
Sbjct: 97 SDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDKTT 154
Query: 173 LYVVYLLMV 181
L++V ++ +
Sbjct: 155 LFIVEMIFI 163
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE + G G EAVWFK FS L Y+
Sbjct: 97 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 137
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+HARWAMLG +G +IPE K G
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIG 128
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L GPDR ++ P S P +L G +PGD+G+DP GL P+ +
Sbjct: 12 GVSAVCEPL----GPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWF 62
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG ++PE K+G
Sbjct: 63 AQAELMHSRWAMLAVAGILVPEVLEKWG 90
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL++ P++F++Y+ ELIH RWAML G +IPEA
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALG 108
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 131
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 131
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE +G
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 VPK--WYDAGKAEYFASSSTLFVIEFIL 148
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YG R FL + E P +L G + GD G+DP GL K DD + + EL+HARWAM
Sbjct: 158 YGARRVKFLGDA---EYEYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHARWAM 212
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
LG G +PE ++G E VW+KV
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVG 241
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 97 YLTGE--VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
YL G+ PG +DPF +S D+F K + E+ H R AM+ G A F
Sbjct: 298 YLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIKHGRLAMIAMLGV----AAQAFVTRA 353
Query: 155 GP 156
GP
Sbjct: 354 GP 355
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 122 VPK--WYDAGKVEYFASSSTLFVIEFIL 147
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKVNLHFSRSLLLYVVYLLM 180
P+ +F+ S L+V+ ++
Sbjct: 123 VPKWYAAGKEEYFASSSTLFVIEFIL 148
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+V+ ++
Sbjct: 124 VPE--WYDAGKEQYFASSSTLFVIEFIL 149
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKVNLHFSRSLLLYVVYLLM 180
P+ +F+ S L+V+ ++
Sbjct: 123 VPKWYAAGKEEYFASSSTLFVIEFIL 148
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+HARWAMLG
Sbjct: 52 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLG 106
Query: 138 AAGFIIPEAFNKFG 151
+G +IPE K G
Sbjct: 107 VSGILIPELLEKMG 120
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYG R R+ P G ++L GE GD G+DP L K P F++++ EL+HA
Sbjct: 53 SKWYGASRPRLPGPLG------GAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHA 106
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
RWAMLG G ++PE G G E VW+KV
Sbjct: 107 RWAMLGFVGCMVPELLALRGVELG-EPVWWKVG 138
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVAL-FSKKKAAPPAK 59
MAS AA ++S+ A ++ + + + GA+ S A+ + KAA P +
Sbjct: 1 MASGAAVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRR 60
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ V E W+ + P +L G +PGD+G+DP GL P+
Sbjct: 61 AAVTVSQAVQTERPLWF-------------PGNTPPPWLDGSLPGDFGFDPLGLGSDPET 107
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFSRSLLLYVVY 177
EL+H RWAMLGAAG IPE K G P W+ +F+ L+VV
Sbjct: 108 LKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPS--WYTAGELEYFTDKTTLFVVE 165
Query: 178 LLMV 181
++ +
Sbjct: 166 MIFL 169
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD+G+DP GL + P+ Y EL+H+R+AMLG G ++ + G N
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNS 127
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P +WF+ V F+ + L VV LL++
Sbjct: 128 IP--IWFEAGAVKYEFANTGTLVVVQLLLM 155
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 42 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWF 92
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG +IPE + G
Sbjct: 93 AQAELMHSRWAMLAVAGILIPECLERLG 120
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 30 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELLTKLGILN 89
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLMV 181
P W+ +F+ L+VV ++ +
Sbjct: 90 TPS--WYTAGELEYFTDKTTLFVVEMIFL 116
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+V+ ++
Sbjct: 123 VPK--WYDAGKSEYFASSSTLFVIEFIL 148
>gi|117661756|gb|ABK55666.1| chloroplast chlorophyll a/b-binding protein [Cucumis sativus]
Length = 137
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFK 59
Query: 163 VNLH-FSRSLLLYV 175
FS L Y+
Sbjct: 60 AGSQIFSEGGLDYL 73
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A + VS V E L GPDR I+ P S P +L G +PGD+G+DP GL +P
Sbjct: 8 ANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEP 58
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 59 ELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG 92
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 121 VPK--WYDAGKAEYFASSSTLFVIEFIL 146
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
P YL G +P DYG+DP GL K+PD+ +++Q ELIHARWAMLG +G
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG 91
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 163 VNLH-FSRSLLLYVVYLLMVLLMSCF----CRLELYFLMETH 199
FS L Y+ ++ S C++ L L+E +
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGY 104
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 122 VPK--WYDAGKVEYFASSSTLFVIEFIL 147
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H RWAML
Sbjct: 65 GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAML 119
Query: 137 GAAGFIIPEAFNKFG 151
AG +IPE K+G
Sbjct: 120 AVAGILIPEILQKWG 134
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H RWAML
Sbjct: 65 GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAML 119
Query: 137 GAAGFIIPEAFNKFG 151
AG +IPE K+G
Sbjct: 120 AVAGILIPEILQKWG 134
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 12 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWF 62
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+H+RWAML AG +IPE + G
Sbjct: 63 AQAELMHSRWAMLAVAGILIPECLERLG 90
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGDYG+DP L + D Y EL HARWAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 155 GPEAVWFKV---NLHFSRSLLLYVVYLLMV 181
P W N +F+ S L+ V + M+
Sbjct: 106 LPN--WHDAPFYNGYFASSTTLFTVQMFMM 133
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H RWAML
Sbjct: 62 GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMHGRWAML 116
Query: 137 GAAGFIIPEAFNKFG 151
AG +IPE K+G
Sbjct: 117 AVAGILIPEILQKWG 131
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PG++G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151
EL+HARWAMLG +G +IPE K G
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIG 128
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALG 107
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 54 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 153 NCGPEAVWFKVN--LHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+V+ ++
Sbjct: 114 LNAPE--WYDAGKETYFASSSTLFVIEFIL 141
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 115 VPK--WYDAGKVEYFASSSTLFVIEFIL 140
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 80 GVSTVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWF 130
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL--HFSRSLLLYVVYLLMV 181
EL+H+RWAML AG +IPE G WF +F+ L++V L+++
Sbjct: 131 AQAELMHSRWAMLAVAGILIPEWLESLGFI--ENYNWFDAGAREYFADPTTLFIVQLVLM 188
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 37/57 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
PEYL GE+ GDYG+DP G +P EL+H RWAMLGAAG ++PE NK G
Sbjct: 40 PEYLKGELAGDYGFDPLGFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTG 96
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + PD+ +++ ELIH RWAML G +IPEA
Sbjct: 58 PAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEALG 111
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+VV ++
Sbjct: 119 APQ--WYDASKSEYFASSSTLFVVEFIL 144
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+L G +PGD+G+DPFGL PD + ELIH+RWAML G IIPE + G
Sbjct: 77 NWLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG 132
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K A++ P S A G RR++ P E P YL GE+ GDY
Sbjct: 13 AFLTGRKVVSKARAGPAPRSTFQVSAAASQG--RRLWAPG-----VEAPSYLNGELAGDY 65
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
G+DP GL KP+ Y+ EL+HARWAML AG + E
Sbjct: 66 GWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQE 104
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+VV ++
Sbjct: 119 APQ--WYDAGKSEYFASSSTLFVVEFIL 144
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 37 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 96
Query: 153 NCGPEAVWFKVN--LHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+V+ ++
Sbjct: 97 LNAPE--WYDAGKETYFASSSTLFVIEFIL 124
>gi|428230868|gb|AFY99056.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 107
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
GDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAVWFK
Sbjct: 7 GDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKA 65
Query: 164 NLH-FSRSLLLYV 175
FS L Y+
Sbjct: 66 GSQIFSEGGLDYL 78
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ + +F+ S L+VV ++
Sbjct: 119 APQ--WYDAGKSEYFASSSTLFVVEFIL 144
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K +A PA +KPV+ + KWY ++ P YL G +PGDYGYDP
Sbjct: 26 KASAKPAGAKPVSTVVRADLGKKWY-------------TGAKPPAYLDGSMPGDYGYDPL 72
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
+ P+ YQ E+ + RWAM+G AG + +A +FG + P+ W++
Sbjct: 73 RMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPD--WYE 121
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK- 162
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFEA 130
Query: 163 --VNLHFSRSLLLYVVYLLMV 181
F+ + L+ V LL++
Sbjct: 131 GATKFDFANTTALFFVQLLLM 151
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEAL 63
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWAMLG AG ++PE F + G
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 155 GPEAVWFKV--NLHFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 VPK--WYDAGKQEYFASSSTLFVIEFIL 148
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+HARWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLA 108
Query: 138 AAGFIIPEAFNKFG 151
G ++PE K G
Sbjct: 109 VFGILVPELLEKIG 122
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALG 109
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 15/98 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTG +P DYG+DP GL K+P + +++Q E+IH+RWAMLG AG EA
Sbjct: 47 PAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITGV---- 102
Query: 155 GPEAVWFKVNLHFSRSLL-------LYVVYLLMVLLMS 185
W + + S++ L L VV + V +M+
Sbjct: 103 ----TWIEAPVQDSQTYLGAESPFPLPVVVAIEVFVMA 136
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P +W+ +F+ + L+V+ LM
Sbjct: 119 AP--LWYDAGKVEYFAPASTLFVIEFLM 144
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ KAA P ++ + V E W+ + P +L G +P D+G+DP
Sbjct: 52 QSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGFDP 98
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRS 170
GL P+ EL+H RWAMLGAAG IPE K G P +F+
Sbjct: 99 LGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEQEYFTDK 158
Query: 171 LLLYVVYLLMV 181
L+VV ++ +
Sbjct: 159 TTLFVVEMIFL 169
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P +W+ +F+ + L+V+ LM
Sbjct: 119 AP--LWYDAGKVEYFAPASTLFVIEFLM 144
>gi|414881721|tpg|DAA58852.1| TPA: chlorophyll a-b binding protein 2, mRNA [Zea mays]
Length = 311
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWGHARR 108
Query: 139 AGFIIPEA 146
A +P A
Sbjct: 109 ARVRVPGA 116
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP L++ P D + EL++ RWAMLG AG +IPE K G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLS 117
Query: 155 GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
PE W+ +F+ S L+VV ++
Sbjct: 118 APE--WYDAGKETYFASSSTLFVVEFIL 143
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK- 162
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP--VWFEA 130
Query: 163 --VNLHFSRSLLLYVVYLLMV 181
F+ + L+ V LL++
Sbjct: 131 GATKFDFANTTALFFVQLLLM 151
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 90/190 (47%), Gaps = 29/190 (15%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P A+ S G S S + KKAA SK A++ + + WYG +R
Sbjct: 62 PFTAVKAIANSPLGESLQSRME-----ENKKAAVKNSSKFKALAEKAKNESLWYGEERPR 116
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P YLTGE+PGDYG+D GL K P F KY +E++HARWAML A G +
Sbjct: 117 WLGPIPYD---YPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGAL 173
Query: 143 IPEAFNKFGANCGPEAVWFKV----------------NLHFSRSLLLYVVYLLMVLLM-- 184
+PE + GA E VW++V HF+ S + V+ + LLM
Sbjct: 174 LPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVG 233
Query: 185 ---SCFCRLE 191
+ +C +E
Sbjct: 234 PEYARYCGIE 243
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ KAA P ++ + V E W+ + P +L G +P D+G+DP
Sbjct: 52 QSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGFDP 98
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN--LHFS 168
GL P+ EL+H RWAMLGAAG IPE K G P W+ +F+
Sbjct: 99 LGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEYFT 156
Query: 169 RSLLLYVVYLLMV 181
L+VV ++ +
Sbjct: 157 DKTTLFVVEMIFL 169
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGDYG+DP GL ++P+D Y EL+H R+AM G AG + + G
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGN 119
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VWF+ F+ + L+ V LL++
Sbjct: 120 LP--VWFEAGATKFDFANTTALFFVQLLLM 147
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G DP GL++ P+ Y EL++ RWAMLG AG IPE G
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 122 VPK--WYDAGKVEYFASSXTLFVIEFIL 147
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEAL 63
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F A
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------------A 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRSLLLYV 175
MLGA G + PE K G G EAVWFK FS L Y+
Sbjct: 94 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYL 134
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L E+PGDYG+DP L K P+D Y EL H RWAMLG AG PE G +
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 155 GPEAVWFKV---NLHFSRSLLLYVVYLLMV 181
P W + + +F+ + L+ V +LM+
Sbjct: 69 LPN--WHEAPSYDGYFTDATTLFWVQMLMM 96
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG 108
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+E P +L G++P DYG+DP L +KPD+ ++Y+ EL+HARWAM+G AG +
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAV 88
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
VS+ +S+ +N +T++ ++L K + PAKS+ + S R +LP
Sbjct: 12 VSALKDSSSIFTNNINTYQTLSL--NKVTSLPAKSRGIFHSHGRRLCTVVRAQQRPTWLP 69
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
GL + P YL G + GD+G+DP GL + P+ Y EL+H+R+AM G AG + +
Sbjct: 70 -GL----DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTD 124
Query: 146 AFNKFGANCGPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
G + P VW++ F+ + L++V +L++
Sbjct: 125 LLRTTGLSNLP--VWYEAGATKFQFANTTTLFIVQMLLM 161
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALG 109
>gi|30694148|ref|NP_850706.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645786|gb|AEE79307.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 164
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KP FS+ AA P P +A+ +R +LP GL + P YL G +P
Sbjct: 19 KPPTAFSRSTAAMPGHH---VQPPRARVVARASAAERATWLP-GL----DPPPYLDGTLP 70
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK- 162
GDYG+DP GL ++P D Y EL+H R+AM G AG + + G + P VWF+
Sbjct: 71 GDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGISNLP--VWFEA 128
Query: 163 --VNLHFSRSLLLYVVYLLMV 181
F+ + L+ V LL++
Sbjct: 129 GATKFDFANTTALFFVQLLLM 149
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG++ GLS P+ F+K + E+IH+RWA
Sbjct: 33 WYGPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWA 89
Query: 135 ML 136
M
Sbjct: 90 MF 91
>gi|356552039|ref|XP_003544379.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein 4,
chloroplastic-like [Glycine max]
Length = 274
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG D +L + P YLTGE+PGDY +D GL + P + KY +E++HARW
Sbjct: 71 WYGEDGPPWLGS---ISYKYPSYLTGEMPGDYDFDIVGLGQDPVELXKYFNFEILHARWV 127
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFK 162
L +IP+ N GA E VW++
Sbjct: 128 TLAFVSAVIPKILNLLGAVHFVEPVWWR 155
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 62 VPK--WYDAGKAEYFASSSTLFVIEFIL 87
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALG 110
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 62 VPK--WYDAGKAEYFASSSTLFVIEFIL 87
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
GDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 164 NLH-FSRSLLLYV 175
FS L Y+
Sbjct: 60 GAQIFSEGGLDYL 72
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VWF+ V F+ + L +V LL++
Sbjct: 74 IP--VWFEAGAVKYEFTNTQTLIIVQLLLM 101
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 62 VPK--WYDAGKAEYFASSSTLFVIEFIL 87
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G
Sbjct: 2 PNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 62 VPK--WYDAGKAEYFASSSTLFVIEFIL 87
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 108
Query: 138 AAGFIIPEAFNKFG 151
G ++PE + G
Sbjct: 109 VFGILVPELLERIG 122
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+RWAML
Sbjct: 54 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLA 108
Query: 138 AAGFIIPEAFNKFG 151
G ++PE + G
Sbjct: 109 VFGILVPELLERIG 122
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 37/58 (63%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
S P++L G +PGDYG+DP GL + + YQ EL+HARWAMLG AG PE F
Sbjct: 48 STPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIFGN 105
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VWF+ V F+ + L +V LL++
Sbjct: 127 IP--VWFEAGAVKYEFTNTQTLIIVQLLLM 154
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
P +L G +P D+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLG 139
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL GE+ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 139 AGFIIPE 145
AG ++ E
Sbjct: 74 AGVLVQE 80
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP GL P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVE 116
Query: 148 -NKFGANCGPEAVWFKVNLHFSR-SLLLYVVYLLMVLLMS 185
K+ A G +A + V + + ++L + +L M S
Sbjct: 117 AQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAES 156
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
R+ P+ + PG +DP G SK P F +Y+ E+ + R A+L GF + + N
Sbjct: 157 QRNGEPDLEKRKYPGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASAN 214
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 73 AKWYGPDRRIFLPEGLL----DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG DR FLP+ ++ + +P +LTG +PGD G+DP + D K++ EL
Sbjct: 1387 ADLYGNDRIKFLPKSIINLPGENVIVPPHLTGGLPGDIGFDPLKFGAQSD-LLKFREREL 1445
Query: 129 IHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKVNL 165
I+ RWAML A G ++PE KFG G + W+ +
Sbjct: 1446 INGRWAMLAAIGVLLPEFLFKFGLYGEGTDQHWWSTKI 1483
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++Y+ E+++ RWAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 139 AGFIIPEAFNK 149
AG + PE +
Sbjct: 93 AGMLAPELVGQ 103
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + L P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 41 RVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFN 148
+IPEA
Sbjct: 101 ILIPEALG 108
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P+YL GE+ GDYG+DP GL P Y+ EL+HARWAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQE 92
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL G++ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 139 AGFIIPE 145
AG ++ E
Sbjct: 86 AGVLVQE 92
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ KAA P ++ + V E W+ + P +L G +P D+G+DP
Sbjct: 52 QSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGFDP 98
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 99 LGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLG 139
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+ P GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 12 PTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGVAGMLLPEVFTNIGILN 71
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 72 VPK--WYDAGKEEYFASSSTLFVIEFIL 97
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WY IF LL + P+YL G + GDYG+DP GL P+ YQ EL++ARWA
Sbjct: 39 WYEFSFSIFF---LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWA 95
Query: 135 MLGAAGFIIPEAF 147
M+ AG EA
Sbjct: 96 MMAVAGICTTEAL 108
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 115
Query: 148 -NKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLM 184
K+ A G +A +F V + + ++ V L + +
Sbjct: 116 AQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFV 153
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 60
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD+G+DP GL + P++ Y EL+HAR+AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L++V L+++
Sbjct: 126 LP--VWYEAGAVKFEFASTEALFIVQLILM 153
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAV---SPVNEELAKWYGPDRRIFLPEGLLDR---SEI 94
++F VAL + + PA+ V V ELAK R+ GL S+
Sbjct: 5 TSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAK----VERVAKAGGLYQNFTSSQA 60
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFN 148
YL G +PGD+G+DP GL P+ ++ AY E+IH RWAMLG AGF+ PE
Sbjct: 61 LGYLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLA 119
Query: 149 KFGA--NCGPEAVWFK 162
GA EAVWF+
Sbjct: 120 TIGAIPASPEEAVWFR 135
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P DYG+DP L PD + + EL+H RWAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 155 GPEAVWFKV------NLHFSRSLLLYVVYLLM 180
P VWF+ N S LL V +L M
Sbjct: 69 VP--VWFEAGKVANDNSSVPFSALLMVEFLAM 98
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 103 PGDYGYDPF-GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 162 KVNLH-FSRSLLLYV 175
K FS L Y+
Sbjct: 60 KAGAQIFSEGGLDYL 74
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+D GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALG 109
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 54 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 106
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 127
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A PEA+ FS LL LLM
Sbjct: 128 AGAQPEAI-----APFSFGSLLGTQLLLM 151
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 108
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWVE 76
Query: 148 -NKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
K+ A G +A +F V + + ++ V L +
Sbjct: 77 AQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAI 111
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG A
Sbjct: 31 RVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFG--------ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
G + E +G A G +A WF + + F + LL ++ M
Sbjct: 91 GALAVELLG-YGNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAM 138
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P++LTGE PGD G+DP GLSK P F + + E+ H R AMLG G I+PE F
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELF 219
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE N
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL----GNG 783
Query: 155 GPEAVWFKVNLHFSRSLLLYVV 176
+W KV+ + + L VV
Sbjct: 784 AWFQIWDKVDFNRFAVVALQVV 805
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK 598
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK 972
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P +LTGE GD G+DP GL+ PD F + + E+ H R AML G ++P+ K
Sbjct: 359 PSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPDYLGK 413
>gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type I [Malus x domestica]
Length = 147
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 58 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALG 111
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++ GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV L++
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLM 143
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
LN S+ +R + P PVA + A + + +P E WY
Sbjct: 12 LNASTFIRGAGP------VRAPVAKSGRNAAPKRSVVRAGGAAPEPSERPLWY------- 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
++ PE+L G +PGDYG+DP G P EL+HARWAMLG AG +
Sbjct: 59 ------PGTKAPEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAGVLG 112
Query: 144 PEAFNKFGANCGPEAVWF---KVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYF 194
E + G W+ KV+ L+ V+++LM F + YF
Sbjct: 113 QELVH---VTNGSIPHWYEAGKVSYFADTPTLIVVMHILM-----GFVETKRYF 158
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALG 108
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 LH-FSRSLLLYV 175
FS L Y+
Sbjct: 60 SQIFSEGGLDYL 71
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
G RI + + P YL G PGD+G+DP L + P++ +++ ELIH RWAML
Sbjct: 37 GSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 96
Query: 137 GAAGFIIPEAFN 148
G ++PEA
Sbjct: 97 AVPGILVPEALG 108
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFN-------KFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
G + E A G +A WF + + F + LL ++ M
Sbjct: 91 GSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMA 139
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG AG + + G
Sbjct: 70 PPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGIRK 129
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLL 179
P VW++ V F+ + L VV LL
Sbjct: 130 LP--VWYEAGAVKYEFASTRTLLVVQLL 155
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFN-------KFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
G + E A G +A WF + + F + LL ++ M
Sbjct: 91 GSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAM 138
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 165 LH-FSRSLLLYV 175
FS L Y+
Sbjct: 60 SQIFSEGGLDYL 71
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV L++
Sbjct: 108 LP--VWYEAGAVKFDFASTKTLIVVQFLLM 135
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV L++
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLM 143
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV L++
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLM 143
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 130 AGADPNAI-----APFSFGSLLGTQLLLM 153
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 130 AGADPNAI-----APFSFGSLLGTQLLLM 153
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 30 VRTSAPGASNPSTFKPVALFS-KKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARSSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKVN---LHFSRSLLLYVVYLLMV 181
G + P VWF+ F+ + L+ V L ++
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALFFVQLFLM 159
>gi|413946552|gb|AFW79201.1| light harvesting complex mesophyll7 [Zea mays]
Length = 244
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSPLG 106
Query: 135 MLGAAGFIIPEA 146
G A +P A
Sbjct: 107 HAGRARLRLPGA 118
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G + GDYG+DP GL P+ + Y+ EL +ARWAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 155 GPEAVWFKVNL 165
PE W+ +
Sbjct: 100 -PEQWWYSAGM 109
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G I +A++ F
Sbjct: 70 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL LLM + S
Sbjct: 130 AGADPNAI-----APFSFGSLLGTQLLLMGWVES 158
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 72 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 131
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 132 AGADPNAI-----APFSFGTLLGTQLILM 155
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P + Y EL + RWAMLG AG ++PE K G
Sbjct: 61 PAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLIN 120
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P +W+ +F+ + L+V+ ++
Sbjct: 121 AP--LWYDAGKVEYFAPASTLFVIEFIL 146
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + ++++ RWAMLG AG +IPE K G
Sbjct: 41 QSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGL 100
Query: 153 NCGPEAVWFKV 163
PE W ++
Sbjct: 101 MNAPE--WLRL 109
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWA LG AG ++PE G
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 155 GPEAVWFKVNL--HFSRSLLLYVVYLLM 180
P+ W+ +F+ S L+V+ ++
Sbjct: 123 VPK--WYDAGKAEYFASSSTLFVIEFIL 148
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 109
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 LH-FSRSLLLYV 175
FS L Y+
Sbjct: 60 SQIFSEGGLDYL 71
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 132
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 133 AGADPNAI-----APFSFGTLLGTQLILM 156
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 109
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+DP G SK P F +Y+ E+ + R AML GF + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQS 211
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFG--------ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
G + E +G A G +A WF + + F + LL ++ M
Sbjct: 91 GSLAVELLG-YGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAM 138
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 73 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 132
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 133 AGADPNAI-----APFSFGTLLGTQLILM 156
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 165 LH-FSRSLLLYV 175
F+ L Y+
Sbjct: 61 AQIFTEGGLDYL 72
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEAL 107
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEAL 64
>gi|157965833|gb|ABW06953.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 424
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 317
Query: 152 ANCGPEAVWFKVNLHFSRSLL-LYVVYL 178
VWF+ + L LY ++L
Sbjct: 318 ------GVWFQAGESVDAAQLGLYFMFL 339
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 80 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 130
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 127 AGADPGAI-----APFSFGSLLGTQLLLM 150
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 27 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 86
Query: 140 GFIIPEAFNKFG--------ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
G + E +G A G +A WF + + F + LL ++ M
Sbjct: 87 GSLAVELLG-YGNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAM 134
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA-- 152
P +LTG + GD G+DP L K P+ ++ EL+HARWAML G +PEA + GA
Sbjct: 188 PPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAGALP 247
Query: 153 --NCGPEAVWFKVN 164
E VW+KV
Sbjct: 248 EGAALAEPVWWKVG 261
Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 97 YLTGEV--PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
YL G+ PG +DPFGLS D F++ + E+ H R AM+ G
Sbjct: 317 YLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCFA----QAIVTGE 372
Query: 155 GPEAVWFKV 163
GP A W V
Sbjct: 373 GPVANWVSV 381
>gi|157965831|gb|ABW06952.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 786
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 260 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 317
Query: 152 ANCGPEAVWFKVNLHFSRSLL-LYVVYL 178
VWF+ + L LY ++L
Sbjct: 318 ------GVWFQAGESVDAAQLGLYFMFL 339
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P +LTGE PGD G+DP + P+ F + +A E+ H R AMLG AG +IPE +
Sbjct: 622 AKAPPHLTGEFPGDRGFDPVDFAANPESFERMRASEVFHGRMAMLGVAGCLIPELLGR-- 679
Query: 152 ANCGPEAVWFKVNLHFSRSLL-LYVVYL 178
VWF+ + L LY ++L
Sbjct: 680 ------GVWFQAGESVDAAQLGLYFMFL 701
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 80 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 130
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P YLTGE P D G+DP GL+K P + + ++ E+ H+R AMLG G +IPE
Sbjct: 442 PAYLTGEFPADRGFDPLGLAKDPATYERMRSSEVFHSRLAMLGVVGSLIPE 492
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 109
Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+DP G SK P F +Y+ E+ + R AML GF + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQS 211
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV L++
Sbjct: 116 LP--VWYEAGAVKFDFACTKTLIVVQFLLM 143
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 20/157 (12%)
Query: 30 VRTSAPGASNPSTFKPVALFS-KKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKVN---LHFSRSLLLYVVYLLMV 181
G + P VWF+ F+ + L+ V L ++
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALFFVQLFLM 159
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++++PV + V E A W LP G + P +L G +PGD+G+DP GL P
Sbjct: 25 SRARPVRQTVVRAERALW--------LPGG-----DAPAHLDGSLPGDFGFDPLGLGADP 71
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNL 165
+ + + E +HARWAML AG + E P+ W++ L
Sbjct: 72 ERLAWFAESERVHARWAMLAVAGIAVQEVVR-------PDVFWYEAAL 112
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALG 133
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 109
Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+DP G SK P F +Y+ E+ + R AML GF + ++
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQS 211
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL + P D Y EL+H+R+AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VWF+ F+ + L+VV L+++
Sbjct: 72 IP--VWFEAGATKFDFADTTTLFVVQLILM 99
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 127 AGADPGAI-----APFSFGSLLGTQLLLM 150
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 AGADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L +S SA A + A F+ AP + + V N EL W
Sbjct: 4 LTTTSVRAVSAVSARKANFAGSRASFAAPAKAPVSARASLKVQAANREL--W-------- 53
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L D + P +L G +PGD+G+DP GL P+ YQ EL++ARWAM+ AG
Sbjct: 54 ----LKDSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICT 109
Query: 144 PEAFNKFG 151
E G
Sbjct: 110 TEILGIGG 117
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAML G + +A+ F
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFE 132
Query: 152 ANCGPEAV 159
A P AV
Sbjct: 133 AGADPGAV 140
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 128
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 129 AGADPGAI-----APFSFGSLLGTQLLLM 152
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 3 SLAASSTPAASIGAKEMLGNPLNVSS-AVRTSAPGASNPSTFKPVALFS-KKKAAPPAKS 60
SL T A++ + N + S+ RT++P +PVA +S ++ + PA
Sbjct: 36 SLPGKQTSPAAMASTVTAANSSHGSALRTRTASP--------RPVAGWSCRRTLSTPAHH 87
Query: 61 KPVAVSPVNEELAKWY-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
SP +A G R +LP GL + P YL G +PGD+G+DP GL ++P+
Sbjct: 88 HHARPSPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPEA 142
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN---LHFSRSLLLYVV 176
Y EL+H R+AM G AG + + G + P VWF+ F+ + L+ V
Sbjct: 143 LKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALFFV 200
Query: 177 YLLMV 181
L ++
Sbjct: 201 QLFLM 205
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALG 105
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG AG + E
Sbjct: 4 LPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLG 63
Query: 149 -------KFGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A G +A WF +++ F + LL ++ M
Sbjct: 64 YGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAM 102
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVN 164
DYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E VWFK
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 165 LH-FSRSLLLYV 175
FS L Y+
Sbjct: 61 AQIFSEGGLDYL 72
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALG 105
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + + + P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 141 FIIPEAFN 148
+IPEA
Sbjct: 103 VLIPEALG 110
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
P++LTGE PGD G+DP GLS P F + + E+ H R AMLG G I+PE F
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELF 219
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE N
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL----GNG 783
Query: 155 GPEAVWFKVNLHFSRSLLLYVV 176
+W KV+ + + L VV
Sbjct: 784 AWFQIWDKVDFNRFAVVALQVV 805
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK 598
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK 972
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P +L GE GD G+DP GL+ PD F + + E+ H R AML G ++P+ K
Sbjct: 359 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK 413
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 127
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 128 AGADPGAI-----APFSFGTLLGTQLILM 151
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 AGADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 AGADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 128
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 129 AGADPGAI-----APFSFGSLLGTQLLLM 152
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 AGADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALG 110
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
R+ P+ + PG +DP G SK P F +Y+ E+ + R A+L GF + + N
Sbjct: 157 QRNGEPDPEKRKYPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASAN 214
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 128
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 129 AGADPGAI-----APFSFGSLLGTQLILMGWVES 157
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD+G+DP GL + P Y EL+HAR+AM G AG + + G
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRK 126
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ V F+ + L VV LL++
Sbjct: 127 LP--VWYEAGAVKFEFASTRTLIVVQLLLM 154
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALG 113
>gi|110224748|emb|CAL07974.1| chlorophyll a/b-binding protein, photosystem I [Platanus x
acerifolia]
Length = 167
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP L P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLLLGAVPENLERFKESELIHCRWAMLAVPGILVPEALG 109
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P+A+ FS LL LLM
Sbjct: 130 AGAQPDAI-----APFSFGSLLGTQLLLM 153
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P+A+ FS LL LLM
Sbjct: 130 AGAQPDAI-----APFSFGSLLGTQLLLM 153
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALG 110
>gi|169261096|gb|ACA52196.1| chloroplast chlorophyll A/B-binding protein [Oenothera grandiflora]
Length = 109
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
WYGPDR +L G E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 55 WYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 109
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALG 110
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S P +L GE+PGD+G+DP GL PD ++ EL+H+RWAM AG ++ E
Sbjct: 32 LPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAVAGILVQEIVR 91
Query: 149 KFGANCGPEAVWFKVNLHFSRSL 171
P+ W+ L
Sbjct: 92 -------PDVFWYSAGSQVESPL 107
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALG 108
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+P++L +P DYG+DP GL +P+ Y EL+H R+AMLG AG +IP K G
Sbjct: 38 NVPQHLNRNLPADYGFDPLGLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVG 96
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQAWSGIPWFE 127
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 128 AGADPGAI-----APFSFGSLLGTQLILM 151
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 31/130 (23%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL--------SKKPDDFSKYQAY--- 126
PDR ++ P S P +L G +PGD+G+DP GL + +D + Q++
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCD 115
Query: 127 ---------------ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSL 171
EL+H RWAMLGAAG IPE K G P +F+ +
Sbjct: 116 STASDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTT 175
Query: 172 LLYVVYLLMV 181
L++V L+ +
Sbjct: 176 TLFIVELIFI 185
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 132
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 133 AGADPNAI-----APFSFGTLLGTQLILM 156
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
P YLTGE PGD G+DP GLS P+ F + + E+IH R AML G ++P+ K
Sbjct: 95 PAYLTGEFPGDRGFDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFLGK 149
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116
Query: 148 -NKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
++ A G +A +F V + + + + L +
Sbjct: 117 AQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAI 151
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 ACADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|169261112|gb|ACA52204.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera grandiflora]
Length = 103
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 38 SNPSTFKPVALFSKK---KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
S P K L + + + A P K+ + SP WYGPDR +L G E
Sbjct: 17 STPKELKAAGLGNGRVTMRKATPKKAAATSSSP-------WYGPDRVKYL--GPFS-GEA 66
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
P YLTGE PGDYG+D GLS P+ F+K + E+IH+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS 103
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALG 60
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 130 AGADPRAI-----APFSFGSLLGTQLLLM 153
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 66 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 125
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL LLM + S
Sbjct: 126 AGADPRAI-----APFSFGSLLGTQLLLMGWVES 154
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 123
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A PEA+ FS LL LLM
Sbjct: 124 AGAQPEAI-----APFSSGSLLGTQLLLM 147
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 69 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P++L G + GDYG+DP GL + YQ EL+HARWAMLG AG PE
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPE 102
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANC-GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
+ G W+ +F+ + L+ V +L+
Sbjct: 125 FSWPGAGVAWYDAGKFQYFAPASSLFGVQMLL 156
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 ACADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+D GLS P+ + + EL+HARWAMLGA G ++PE +
Sbjct: 37 PSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGSLLPELLATYAGTP 96
Query: 155 GPEAVWFKVN 164
E VWFK
Sbjct: 97 LLEPVWFKAG 106
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 71 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 124
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 14/146 (9%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEGLLDRSEIPEYL 98
PS+ + S++ A PA P SP +A G R +LP GL + P +L
Sbjct: 21 PSSRQLAGWSSRRTLAMPAHHAP---SPRARVVAVRAAGTQRPTWLP-GL----DPPPHL 72
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD+G+DP GL + P Y EL+H R+AM G AG + + G + P
Sbjct: 73 DGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP-- 130
Query: 159 VWFKVN---LHFSRSLLLYVVYLLMV 181
VWF+ F+ + L+ V LL++
Sbjct: 131 VWFEAGAAKFEFANTTALFFVQLLLM 156
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 127
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 128 AGADPGAI-----APFSFGSLLGTQLLLM 151
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++L G + GD+G+DP L K P+ Y EL+H+R+AM G AG ++ + G
Sbjct: 53 PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRD 112
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VW++ F+ + L+VV L+++
Sbjct: 113 LP--VWYEAGATEFEFADTRTLFVVQLILM 140
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANC-GPEAVWFKVN--LHFSRSLLLYVVYLLM 180
+ G W+ +F+ + L+ V +L+
Sbjct: 125 FSWPGAGVAWYDAGKFQYFAPASSLFGVQMLL 156
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 70 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 129
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL +LM
Sbjct: 130 AGADPNAI-----APFSFGSLLGTQLILM 153
>gi|169261110|gb|ACA52203.1| chloroplast photosystem II type I chlorophyll A/B-binding protein
[Oenothera elata subsp. hookeri]
Length = 103
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 112
+ A P K+ + SP WYGPDR +L G E P YLTGE PGDYG+D G
Sbjct: 35 RKATPKKAAATSSSP-------WYGPDRVKYL--GPFS-GEAPSYLTGEFPGDYGWDTAG 84
Query: 113 LSKKPDDFSKYQAYELIHA 131
LS P+ F+K + E+IH+
Sbjct: 85 LSADPETFAKNRELEVIHS 103
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P +L G +P DYG+DP L P++ + EL+H RWAMLG AG + PE K G
Sbjct: 49 SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIG 108
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%)
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L D + P +L G +PGD+G+DP GL P YQ EL+++RWAM+ AG +A
Sbjct: 54 LRDSAVAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAGITTTDAL 113
Query: 148 NKFG 151
N G
Sbjct: 114 NIGG 117
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL + P Y+ ELIH RWAM G + + ++ F
Sbjct: 31 PEWLDGSLPGDYGFDPLGLGRDPAALKWYREAELIHGRWAMAAVVGIFVGQGWSGVPWFE 90
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 91 AGADPAAL-----APFSFGSLLGTQLLLM 114
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 72 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 131
Query: 152 ANCGPEAV 159
A P A+
Sbjct: 132 AGADPNAI 139
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 79 DRRIFLPEGLLDRSEI-PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
D++ ++P D I P +L G +PGD+G+DP GL K P Y+ ELIH RWAM
Sbjct: 50 DKKSWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAA 109
Query: 138 AAGFIIPEAFNK---FGANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
G I +A++ F A P AV FS LL LLM
Sbjct: 110 VLGIFIGQAYSGVPWFEAGAQPGAV-----APFSFGSLLGTQLLLM 150
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE F G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKVEYFASSTTLFVIEFIL 79
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH 166
G+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G G EAVWFK
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 167 -FSRSLLLYV 175
FS L Y+
Sbjct: 60 IFSEGGLDYL 69
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC-GPEA 158
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 159 VWFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ + L+ V +L+
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQMLL 156
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC-GPEA 158
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 159 VWFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ + L+ V +L+
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQMLL 156
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 64 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFE 123
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A PEA+ FS LL LLM
Sbjct: 124 AGAQPEAI-----APFSFGSLLGTQLLLM 147
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
HF+ S L+V+ ++
Sbjct: 59 DAGKAEHFASSSTLFVIEFIL 79
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP + P +L G +PGDYGYDP GL+ PD + + E + RWAM G
Sbjct: 38 DRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
Query: 139 AGFIIPEAFN 148
AG + +A +
Sbjct: 93 AGILFTDALH 102
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALG 78
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P YL G +PG +G+DPFGL P + ++Q EL+H+RWAM G A
Sbjct: 29 RVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVA 87
Query: 140 GFIIPEAFNK 149
G + E +
Sbjct: 88 GALGAELLGQ 97
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P +L G + GDYG+DP GL PD YQ EL++ARWAM+ AG + E
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTE 87
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY ELIH RWAMLG AG + PE
Sbjct: 61 YLDGSLPGDYGFDPLGLSD-PEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 151 GANCGPEA---VWFKVNL 165
G P+ VWFK +
Sbjct: 120 GII--PQETGLVWFKAGM 135
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P YL G PGD+G+DP L + P++ +++ ELIH WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALG 104
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D + P +L G +PGD+G+DP GL P YQ EL++ARWAM+ AG E
Sbjct: 55 DSTVAPAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVL-- 112
Query: 150 FGANCGPEAVWFKV---NLHFSRSLLLYVVYLLMVLL 183
GP W+ V + F LL + + +M +L
Sbjct: 113 ---GIGP--AWYDVGAADFDFPPLALLAIQFPVMGIL 144
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 2 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 58
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC-GPEA 158
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G + G
Sbjct: 59 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 118
Query: 159 VWFKVNL--HFSRSLLLYVVYLLM 180
W+ +F+ + L+ V +L+
Sbjct: 119 AWYDAGKFEYFAPASSLFGVQMLL 142
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 27/29 (93%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKV 163
MLGAAGFIIPEA NKFGANCGPEAVWFK
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKT 29
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVSIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 AGADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
P++L G +PGDYG+DP GL + Y+ EL HARWAMLG G PE
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPE 102
>gi|414591309|tpg|DAA41880.1| TPA: hypothetical protein ZEAMMB73_898154 [Zea mays]
Length = 74
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 29/29 (100%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
GPDRRI+LP+GLLDRSE+PEYLTGEVPG+
Sbjct: 46 GPDRRIYLPDGLLDRSEVPEYLTGEVPGE 74
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 26/165 (15%)
Query: 20 LGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPD 79
+ N + +SS + + + A+ P A FS K +++ VAVS D
Sbjct: 1 MANAVAMSSLLGSKSAVAARP------AAFSGKARTARVQARFVAVSAA----------D 44
Query: 80 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+++ P + P +L G +PGD+G+DP L P +Q EL+H R AM A
Sbjct: 45 RQVWFP----GNAPAP-HLDGSLPGDFGFDPLSLGSDPQLLKWFQQAELVHGRTAMTAVA 99
Query: 140 GFIIPEAFNKFGANCGPE-----AVWFKVNLHFSRSLLLYVVYLL 179
G + P K G P+ +VW + N +F + LL++ +L
Sbjct: 100 GILFPAVATKAGVVNIPQWYDAGSVWVQNNPNFPFAALLFIQIIL 144
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ L++
Sbjct: 59 DAGKAEYFASSSTLFVIELIL 79
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 27/165 (16%)
Query: 19 MLGNPLN-VSSAVRTSAPGASNPSTFKPVAL-----FSKKK---AAPPAKSKPVAVSPVN 69
++ NPL+ +++++ ++ A+ S P + F++KK A A ++P A S
Sbjct: 7 LIRNPLSFLNTSIHSTMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQA-SKAA 65
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQ 124
+ + K DR++F + YL G PGD+GYDP GL K P+ K+
Sbjct: 66 KFVVKAEKSDRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWL 119
Query: 125 AY-ELIHARWAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKVNL 165
AY E+IH R+AMLG AG + PE K G A G VWFK +
Sbjct: 120 AYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGV 162
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+L G +PGDYG+DP LS P+ EL HARWAMLG AG + PE K G
Sbjct: 48 HLDGSLPGDYGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIG 102
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 80 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ +LP GL + P +L G + GD+G+DP GL + P Y EL+H R+AMLG +
Sbjct: 50 RQTWLP-GL----DPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVS 104
Query: 140 GFIIPEAFNKFGANCGPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
G ++ + G + P VW+ V F+ L++V LL++
Sbjct: 105 GVLLTDLLRVTGISELP--VWYNAGAVEYGFANKRTLFIVQLLLM 147
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKY------QAYELIHARWAMLGAAGFIIPEAFNKF 150
YLTG +P DYG+DP GL + + Q E+IHARWAMLGAAG I PE
Sbjct: 35 YLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILATA 94
Query: 151 GA--NCGPEAVWFK 162
G E +WFK
Sbjct: 95 GVIPQTPDEVIWFK 108
>gi|240064638|gb|ACS44644.1| putative chlorophyll a/b binding protein [Lemna minor]
Length = 49
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 1 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 49
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 41/162 (25%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG P+ S+ R+SA + + ++PPAK
Sbjct: 5 ALLSGRQLLGRPVQ-SAVSRSSA---------RKAPFVVRASSSPPAKQ----------- 43
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY 126
G DR+++ + YL G +PGDYG+DP GLS P+ K+ AY
Sbjct: 44 -----GADRQLWFAS-----KQSLSYLDGTLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 92
Query: 127 -ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKVNL 165
E+I+ R+AMLGA G I PE F K G PE WFK +
Sbjct: 93 GEVINGRYAMLGAVGAIAPEIFGKMGI-IPPETALPWFKTGV 133
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PEA G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM + +A++ F
Sbjct: 35 PEWLDGSLPGDYGFDPLGLGKDPTFLKWYREAELIHGRWAMAAVVSIFVGQAWSGIPWFE 94
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMS 185
A P A+ FS LL +LM + S
Sbjct: 95 ACADPGAI-----APFSFGSLLGTQLILMGWVES 123
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 96 EYLTGEVPGDYGYDPFGL-------SKKPDDFSK---YQAYELIHARWAMLGAAGFIIPE 145
+YL G +PGDYG+DP GL + F Q E+IHARWAMLGAAG I PE
Sbjct: 68 KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 146 AFNKFGANCGPEAV-WFKVNL 165
K G AV WF+ +
Sbjct: 128 ILGKAGVIPAETAVDWFRTGV 148
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S P +L GE+PGD+G+DP GL + ++ EL+H RWAM AG ++ E
Sbjct: 33 LPGSTPPAHLKGELPGDFGFDPLGLGANAESLKWFKESELVHCRWAMAAVAGILVQEIVR 92
Query: 149 KFGANCGPEAVWFKVNLHFSRSL----LLYVVYLLM 180
P+ W+ L LL V + LM
Sbjct: 93 -------PDVFWYNAGKEVESPLGPLGLLAVEFFLM 121
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLH-FSRS 170
GLS P F++Y+ E+IHARWAMLGA G I PE K G G EAVWFK F
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 171 LLLYVVYLLMVLLMSCFCRLELYFLM 196
L Y+ +V S L + L+
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLL 86
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL++ P Y EL+H R+AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 155 GPEAVWFK---VNLHFSRSLLLYVVYLLMV 181
P VWF+ V F+ + L++V L+++
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLFLVQLVLM 151
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 68 PSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAYSGVPWFE 127
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P AV FS LL LLM
Sbjct: 128 AGAQPGAV-----APFSFGSLLGTQLLLM 151
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 56 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 115
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 116 AGADPSAI-----APFSFGSLLGTQLLLM 139
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN--- 148
SE EYL ++PG++ +DP L K+ +Y+ ELIH RWAMLGAAG + E
Sbjct: 41 SEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLGN 99
Query: 149 ----KFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVL 182
A G + WF + + F + +L V + M +
Sbjct: 100 WYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAV 137
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 60 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 119
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 120 AGADPSAI-----APFSFGSLLGTQLLLM 143
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 62 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFVGQAWSGVPWFE 121
Query: 152 ANCGPEAV 159
A P AV
Sbjct: 122 AGAQPGAV 129
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
A++ S + F K AP A++ A P + DR ++ P G+ P
Sbjct: 2 AASVSQMIQASTFLGSKVAPVARA--TAAKPQAKFAVFAAKADRPLWCP-GI----PAPS 54
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
YL G +PGD+GYDP LS PD EL +ARWAMLG AG +
Sbjct: 55 YLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGML 100
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 ---KVNLHFSRSLLLYVVYLLM 180
KV S S L + ++L
Sbjct: 59 DAGKVEYFASSSTLFVIEFILF 80
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S P +L G++PGD+G+DP GL + ++ EL+H+RWAM AG ++ E
Sbjct: 33 LPGSTPPAHLKGDLPGDFGFDPLGLGANAESLKWFKESELVHSRWAMAAVAGILVQEIVR 92
Query: 149 KFGANCGPEAVWFKVNLHFSRSL----LLYVVYLLM 180
P+ W+ L LL V + LM
Sbjct: 93 -------PDVFWYNAGKEVESPLGPLGLLAVEFFLM 121
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 48
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 132
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 53 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 106
Query: 133 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKVNL 165
+AMLG AG + PE K G A G VWFK +
Sbjct: 107 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGV 140
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
+ P +L G +PGD+G+DP GLS P+ EL HARWAMLG AG + P+
Sbjct: 42 DAPAHLDGSLPGDFGFDPLGLSVDPEMKKWMVQAELQHARWAMLGVAGMVGPD 94
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 67 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 126
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 127 AGADPGAI-----APFSFGSLLGTQLLLM 150
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P +L G PGD+G+DP GL+ P++ +++ E+ H RWAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 85
Query: 148 -NKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMV 181
++ A G +A +F V + + + + L +
Sbjct: 86 AQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAI 120
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP G+S ++ AY E+IH RWAMLG AG + PE G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 152 ---ANCGPEAVWFK 162
A+ G VWFK
Sbjct: 157 IIPADTG--LVWFK 168
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGDYG+DP GL K P Y+ ELIH RWAM G + A++ F
Sbjct: 64 PPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAVLGIFVGRAWSGVPWFE 123
Query: 152 ANCGPEAV 159
A P AV
Sbjct: 124 AGAQPGAV 131
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPR--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFVL 79
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
P +L G +PGDYG+DP GL K P Y+ E+IH RWAM G + +A++
Sbjct: 38 PSWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEIIHGRWAMAAVLGIFVGQAWS 91
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNK 149
P +LTGE PGD G+DP GLSK P F++ + E+ H R AMLG G + E FNK
Sbjct: 18 PAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWLFNK 73
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P G P YLTG+ GD G+DP GL+ P F + + E+ H R AML
Sbjct: 194 DRPLWFPGGY-----APSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAI 248
Query: 139 AGFIIPEAFNK 149
G ++P+ K
Sbjct: 249 VGAVVPDILGK 259
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+PE K
Sbjct: 390 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK----- 444
Query: 155 GPEAVWFKVN 164
WF+V
Sbjct: 445 ---GAWFEVG 451
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+PE K
Sbjct: 763 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILPELLGK----- 817
Query: 155 GPEAVWFKVN 164
WF+V
Sbjct: 818 ---GAWFEVG 824
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE P D G+DP GL+ P + + + E+ + R AML G + PE
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELLGN----- 627
Query: 155 GPEAVWFKV 163
VWF+V
Sbjct: 628 ---GVWFEV 633
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 151
P +L G +PGD+G+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 65 PPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFE 124
Query: 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLM 180
A P A+ FS LL LLM
Sbjct: 125 AGADPGAI-----APFSFGSLLGTQLLLM 148
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S+ P YL ++PG YG+DP L + P Y EL+H+R+AM AG +IPE
Sbjct: 39 LPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAGILIPEVLK 97
Query: 149 KFGANCGPEAVWFKVNLHFSRS 170
FGA P VW++ + S
Sbjct: 98 AFGAVNLP--VWYEAGKYAQES 117
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
+PGD G+DP GL++ P++ Y EL++ RWAMLG G ++PE G P+ W+
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPK--WY 58
Query: 162 KVNL--HFSRSLLLYVVYLLM 180
+F+ S L+V+ ++
Sbjct: 59 DAGKAEYFASSSTLFVIEFIL 79
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,440,601,682
Number of Sequences: 23463169
Number of extensions: 156924978
Number of successful extensions: 410455
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 316
Number of HSP's that attempted gapping in prelim test: 406677
Number of HSP's gapped (non-prelim): 3343
length of query: 199
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 64
effective length of database: 9,191,667,552
effective search space: 588266723328
effective search space used: 588266723328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)