Query 029083
Match_columns 199
No_of_seqs 184 out of 953
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 07:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 2.4E-34 5.3E-39 255.7 8.3 145 16-193 7-194 (286)
2 PLN00025 photosystem II light 100.0 1.7E-31 3.6E-36 235.2 8.9 102 72-177 43-145 (262)
3 PLN00171 photosystem light-ha 100.0 1.1E-30 2.3E-35 235.5 7.6 105 69-176 97-202 (324)
4 PLN00098 light-harvesting comp 100.0 1.9E-29 4.2E-34 222.6 9.8 109 72-193 54-164 (267)
5 PLN00101 Photosystem I light-h 99.9 7.6E-28 1.6E-32 210.9 11.0 109 73-194 46-156 (250)
6 PLN00097 photosystem I light h 99.9 6.4E-28 1.4E-32 210.7 8.5 108 77-194 41-148 (244)
7 PLN00048 photosystem I light h 99.9 1.2E-27 2.5E-32 210.8 7.5 114 74-193 36-158 (262)
8 PLN00100 light-harvesting comp 99.9 1.2E-25 2.6E-30 196.7 10.1 99 78-193 33-131 (246)
9 PLN00147 light-harvesting comp 99.9 9.8E-26 2.1E-30 197.8 9.2 109 74-193 39-148 (252)
10 PLN00170 photosystem II light- 99.9 1.2E-25 2.5E-30 197.6 7.6 106 78-193 49-156 (255)
11 PLN00099 light-harvesting comp 99.9 6.5E-25 1.4E-29 191.7 6.8 103 78-193 42-154 (243)
12 PF00504 Chloroa_b-bind: Chlor 99.8 2.7E-19 5.8E-24 143.9 8.3 70 94-164 1-72 (156)
13 PLN00089 fucoxanthin-chlorophy 99.6 1.3E-15 2.8E-20 130.8 7.6 58 94-152 46-104 (209)
14 PLN00147 light-harvesting comp 99.6 1.2E-15 2.7E-20 134.2 5.4 58 96-153 173-230 (252)
15 PLN00089 fucoxanthin-chlorophy 99.6 2.8E-15 6E-20 128.7 4.7 54 100-153 153-207 (209)
16 PLN00048 photosystem I light h 99.5 5.3E-15 1.2E-19 130.8 3.9 54 100-153 187-240 (262)
17 PLN00025 photosystem II light 99.5 2.8E-14 6E-19 126.3 4.4 54 99-153 183-236 (262)
18 PLN00187 photosystem II light- 99.5 4.5E-14 9.8E-19 126.3 4.4 54 100-153 212-265 (286)
19 PLN00099 light-harvesting comp 99.4 8.8E-14 1.9E-18 122.0 4.3 53 100-153 164-217 (243)
20 PLN00098 light-harvesting comp 99.4 1.6E-13 3.5E-18 121.8 4.7 53 101-153 192-245 (267)
21 PF00504 Chloroa_b-bind: Chlor 99.4 2.2E-13 4.7E-18 109.6 4.0 50 97-146 107-156 (156)
22 PLN00171 photosystem light-ha 99.4 5.1E-13 1.1E-17 121.3 4.7 52 102-153 252-303 (324)
23 PLN00097 photosystem I light h 99.4 6.1E-13 1.3E-17 116.9 4.6 53 101-153 170-227 (244)
24 PLN00100 light-harvesting comp 99.3 2.7E-12 5.9E-17 112.9 3.6 48 101-153 143-190 (246)
25 PLN00120 fucoxanthin-chlorophy 99.2 4.6E-12 9.9E-17 108.4 4.1 51 100-150 142-195 (202)
26 PLN00120 fucoxanthin-chlorophy 99.2 1.6E-11 3.4E-16 105.1 6.8 39 108-146 47-87 (202)
27 PLN00170 photosystem II light- 99.2 1.2E-11 2.6E-16 109.3 3.9 51 102-153 191-250 (255)
28 PLN00101 Photosystem I light-h 99.2 1.1E-11 2.4E-16 109.2 3.6 47 102-153 184-230 (250)
29 PHA02337 putative high light i 98.0 3.8E-06 8.2E-11 54.4 1.9 30 124-153 3-32 (35)
30 PLN00014 light-harvesting-like 97.1 0.00029 6.4E-09 62.4 2.8 31 123-153 159-189 (250)
31 PLN00084 photosystem II subuni 96.1 0.0026 5.6E-08 54.7 1.4 35 119-153 131-166 (214)
32 KOG1576 Predicted oxidoreducta 27.2 21 0.00045 33.4 -0.0 45 70-116 71-120 (342)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.4e-34 Score=255.66 Aligned_cols=145 Identities=28% Similarity=0.498 Sum_probs=107.4
Q ss_pred cccccCCccccccccccCCCCCCCCCCCcceEeeecccCCCCCCCCCCcCCCchhhhhhhcCCCCccccccCccCCCCCC
Q 029083 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95 (199)
Q Consensus 16 ~s~~lg~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~k~a~~~~~k~~~~~~~~~~~~~wyg~~R~~~lp~G~le~~~~P 95 (199)
+|.|.|.++. .+.++..+++++|+..++..++ ++++ + ...||++||++|+|+ .++|
T Consensus 7 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-----~~~~~~~~r~~w~p~-----~~~P 62 (286)
T PLN00187 7 ASSFMGTRVP-----------DVASNSGRIVARFGFGKKKKAA-KKAK--K-----KSSKVGADRPLWFPG-----AKAP 62 (286)
T ss_pred chhhhhhhhc-----------ccccCccchhhhhccCcccccC-Cccc--c-----CccCCCCCccccCCC-----CCCc
Confidence 3668887776 2334677889998753322111 1111 1 126899999999997 8899
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhh-------------------------------------------HHHHHHHHHhhcc
Q 029083 96 EYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHAR 132 (199)
Q Consensus 96 ~yL~G~~PGD~GfDPlGL~kdpe~-------------------------------------------~~~~r~aEL~hGR 132 (199)
+||||++||||||||+||+++||. ++|||++||+|||
T Consensus 63 ~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGR 142 (286)
T PLN00187 63 EWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGR 142 (286)
T ss_pred ccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhH
Confidence 999999999999999999999986 5999999999999
Q ss_pred hhhhhhhhhhhhhhhccCCCCCCCCccccccchhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 029083 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 133 ~AMLa~~G~lv~ell~g~G~~~~~~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
|||||++||+++|++++ ..|+++|.+....+..|+++ ..|+.+..+.|+|++
T Consensus 143 wAMLAvaG~lvpEll~G--------~~W~~aG~~~~~~g~~y~g~-~~p~~~~~l~~iqvl 194 (286)
T PLN00187 143 WAMLATLGALSVEALTG--------VTWQDAGKVELVDGSSYLGQ-PLPFSITTLIWIEVL 194 (286)
T ss_pred HHHHHhhchhhHHhccC--------Cccccccccccccccccccc-ccchhHHHHHHHHHH
Confidence 99999999999999863 35999998744334468773 344444445555533
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=235.17 Aligned_cols=102 Identities=52% Similarity=0.968 Sum_probs=91.1
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCC
Q 029083 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G 151 (199)
.+.|||+||++|| |++. .++|.||||++||||||||+||++|++++++||++||+||||||||++|++++|++++.|
T Consensus 43 ~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 3479999999999 4454 589999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCccccccchh-hcccchhHHHH
Q 029083 152 ANCGPEAVWFKVNLH-FSRSLLLYVVY 177 (199)
Q Consensus 152 ~~~~~~~~W~~aG~~-~~~~~l~y~g~ 177 (199)
.... ++.||++|.+ +.+++++|+++
T Consensus 120 ~~~~-~~~W~~ag~~~~~~gg~~y~~~ 145 (262)
T PLN00025 120 VKFG-EAVWFKAGAQIFSEGGLDYLGN 145 (262)
T ss_pred cCcC-cccccccccccccccccccccC
Confidence 7654 6789999986 56778899885
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.96 E-value=1.1e-30 Score=235.52 Aligned_cols=105 Identities=43% Similarity=0.814 Sum_probs=89.9
Q ss_pred hhhhhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhc
Q 029083 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (199)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~ 148 (199)
.++.+.|||++|++|||+ +. .++|+||||++||||||||+||++|++++++||++||+||||||||++|++++|+++
T Consensus 97 ~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~ 173 (324)
T PLN00171 97 ARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLD 173 (324)
T ss_pred hcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhc
Confidence 445678999999999964 33 379999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccchhhccc-chhHHH
Q 029083 149 KFGANCGPEAVWFKVNLHFSRS-LLLYVV 176 (199)
Q Consensus 149 g~G~~~~~~~~W~~aG~~~~~~-~l~y~g 176 (199)
+.|....++++||++|.....+ .++|++
T Consensus 174 ~~g~~~~~~p~W~~aG~~~~~g~~~~y~~ 202 (324)
T PLN00171 174 LFGAVHFAEPVWWRVGYAKLQGDTLDYLG 202 (324)
T ss_pred cCCccccCccchhhcccccccccchhhcc
Confidence 8776544468899999764433 566665
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.96 E-value=1.9e-29 Score=222.64 Aligned_cols=109 Identities=35% Similarity=0.702 Sum_probs=93.7
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCC
Q 029083 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G 151 (199)
...+|+++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|++++|++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 446799999999997 789999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCccccccchhhcccchhHHHH--HHHHHHHHHHHHHHhh
Q 029083 152 ANCGPEAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELY 193 (199)
Q Consensus 152 ~~~~~~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~ 193 (199)
+.. +..||++|... |++. ....++++++.|+|.+
T Consensus 129 ~~~--~~~w~~Ag~~~------~~~~~~~l~~~q~~lmG~~E~~ 164 (267)
T PLN00098 129 FIE--NFSWYDAGARE------YFADPTTLFVVQMVLMGWAEGR 164 (267)
T ss_pred ccc--ccccccccchh------hccCchHHHHHHHHHHHHHHHH
Confidence 754 46799998752 2221 3445688889999974
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.95 E-value=7.6e-28 Score=210.86 Aligned_cols=109 Identities=33% Similarity=0.675 Sum_probs=93.7
Q ss_pred hhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCC
Q 029083 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 73 ~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~ 152 (199)
..+++.+|++|+|+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|++++|++++.|+
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 35677899999996 7899999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccccccchhhcccchhHHHH--HHHHHHHHHHHHHHhhh
Q 029083 153 NCGPEAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELYF 194 (199)
Q Consensus 153 ~~~~~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~~ 194 (199)
... +.||++|... |++. ..+.++++++.|+|.+=
T Consensus 121 ~~~--p~w~~ag~~~------~~~~~~~l~~ie~~~mg~~E~~R 156 (250)
T PLN00101 121 INA--PQWYDAGKAE------YFASSSTLFVIEFILFHYVEIRR 156 (250)
T ss_pred cCC--Cccccccchh------hcccchHHHHHHHHHHHHHHHHH
Confidence 754 5799998752 3332 35556778889999754
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.95 E-value=6.4e-28 Score=210.73 Aligned_cols=108 Identities=32% Similarity=0.556 Sum_probs=91.1
Q ss_pred CCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCCC
Q 029083 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (199)
Q Consensus 77 g~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~~ 156 (199)
+++|++|+|+ .++|+||||++||||||||+||++|+++++++|++||+||||||||++|++++|++++.|...
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 4699999996 789999999999999999999999999999999999999999999999999999999887743
Q ss_pred CccccccchhhcccchhHHHHHHHHHHHHHHHHHHhhh
Q 029083 157 EAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYF 194 (199)
Q Consensus 157 ~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~ 194 (199)
.+.||+++... +.+.-.+ .++.++++++.|+|+.-
T Consensus 114 ~p~W~~Ag~~~--~~~~~~~-~l~~i~~~lmg~~E~~r 148 (244)
T PLN00097 114 LPNWIDAAKWD--GYWAGAG-PLFFIQMAMFNWAEIRR 148 (244)
T ss_pred CCccccCCcch--hccccch-hHHHHHHHHHHHHHHHH
Confidence 45799999752 1010112 46677888899999753
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.94 E-value=1.2e-27 Score=210.82 Aligned_cols=114 Identities=34% Similarity=0.535 Sum_probs=92.4
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChh------hHHHHHHHHHhhcchhhhhhhhhhhhhhh
Q 029083 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe------~~~~~r~aEL~hGR~AMLa~~G~lv~ell 147 (199)
.+|+++|++|+|+ .++|+||||++||||||||+||++ ++ +.+++|++||+||||||||++|++++|++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell 109 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEIL 109 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHh
Confidence 4567899999996 789999999999999999999974 33 56889999999999999999999999999
Q ss_pred ccCCCCCCC-CccccccchhhcccchhHHHH--HHHHHHHHHHHHHHhh
Q 029083 148 NKFGANCGP-EAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELY 193 (199)
Q Consensus 148 ~g~G~~~~~-~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~ 193 (199)
++.|..... ...||++|+....+..+|+++ ..+.++++++.|+|++
T Consensus 110 ~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~ 158 (262)
T PLN00048 110 GKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHR 158 (262)
T ss_pred ccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeee
Confidence 988875421 346999998655556677774 3445577778888764
No 8
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.93 E-value=1.2e-25 Score=196.69 Aligned_cols=99 Identities=27% Similarity=0.560 Sum_probs=83.2
Q ss_pred CCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCCCC
Q 029083 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (199)
Q Consensus 78 ~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~~~ 157 (199)
.+|++|+|+ .+.|+||||++||||||||+||++++|+++++|++||+||||||||++|++++|+++.
T Consensus 33 ~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-------- 99 (246)
T PLN00100 33 RARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-------- 99 (246)
T ss_pred CCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc--------
Confidence 389999996 7899999999999999999999999999999999999999999999999999999752
Q ss_pred ccccccchhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 029083 158 AVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 158 ~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
+.|+++|...... + . .....++++++.++|.+
T Consensus 100 P~w~~ag~~~~~~--~-~-~~l~~iqill~g~~E~~ 131 (246)
T PLN00100 100 PKFWEAGAEKYGL--D-L-QTLVLIQVVVMAVLEAA 131 (246)
T ss_pred cchhhcchhhhcc--c-h-hHHHHHHHHHHHHHhhh
Confidence 4599988753321 1 1 13455688888999875
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.92 E-value=9.8e-26 Score=197.77 Aligned_cols=109 Identities=28% Similarity=0.510 Sum_probs=90.8
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..++++|++|+|+ .++|+||||++||||||||+||++|++++++||++||+||||||||++|++++|+++..|..
T Consensus 39 ~~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 39 PVVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred ccCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 4566899999996 68999999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCCccccccchhhcc-cchhHHHHHHHHHHHHHHHHHHhh
Q 029083 154 CGPEAVWFKVNLHFSR-SLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 154 ~~~~~~W~~aG~~~~~-~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
.. +.|++++..... ... .....++++++.|+|..
T Consensus 114 ~~--p~w~~ag~~~~~~~~~----~~~~~~q~~~mG~~E~~ 148 (252)
T PLN00147 114 NL--PVWYEAGAVKFEFAST----RTLFVVQLLLMGFAETK 148 (252)
T ss_pred CC--cchhhcccchhccccc----hHHHHHHHHHHHHHHHH
Confidence 43 579999865221 111 13455678889999974
No 10
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.92 E-value=1.2e-25 Score=197.60 Aligned_cols=106 Identities=29% Similarity=0.559 Sum_probs=84.8
Q ss_pred CCCccccccCcc--CCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCC
Q 029083 78 PDRRIFLPEGLL--DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155 (199)
Q Consensus 78 ~~R~~~lp~G~l--e~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~ 155 (199)
.+|+.|+|+ .= ....+|+||||++||||||||++|++|+|++++||++||+||||||||++||+++|++++
T Consensus 49 ~~~k~w~p~-~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------ 121 (255)
T PLN00170 49 QPKKSWIPA-VKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------ 121 (255)
T ss_pred CCCccccCC-CCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC------
Confidence 377888884 11 013579999999999999999999999999999999999999999999999999999874
Q ss_pred CCccccccchhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 029083 156 PEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELY 193 (199)
Q Consensus 156 ~~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~ 193 (199)
..||++|.....-....+. +++.++++++.|+|.+
T Consensus 122 --~~w~~aG~~~~~~~p~~~~-~l~~~q~~lmg~~E~~ 156 (255)
T PLN00170 122 --IPWFEAGADPGAIAPFSFG-SLLGTQLLLMGWVESK 156 (255)
T ss_pred --CChhhCCccccccCccchH-HHHHHHHHHhhhhhhe
Confidence 3599999863111111223 5677789999999975
No 11
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.91 E-value=6.5e-25 Score=191.73 Aligned_cols=103 Identities=30% Similarity=0.653 Sum_probs=81.8
Q ss_pred CCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCCCC
Q 029083 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (199)
Q Consensus 78 ~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~~~ 157 (199)
.+|..|+|+ .+.|+||||++||||||||+||++++++++++|++||+||||||||++|++++|+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 478899996 7899999999999999999999999999999999999999999999999999999763
Q ss_pred ccccccchh--hcccchhHHHH--------HHHHHHHHHHHHHHhh
Q 029083 158 AVWFKVNLH--FSRSLLLYVVY--------LLMVLLMSCFCRLELY 193 (199)
Q Consensus 158 ~~W~~aG~~--~~~~~l~y~g~--------~~~p~~~~~~~~~e~~ 193 (199)
..|++++.. +.++...|+|+ ....++++.+.++|.+
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~ 154 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQ 154 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 248888753 33445556543 1222355556666653
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.79 E-value=2.7e-19 Score=143.86 Aligned_cols=70 Identities=44% Similarity=0.774 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC--CCCCccccccc
Q 029083 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN--CGPEAVWFKVN 164 (199)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~--~~~~~~W~~aG 164 (199)
+|+||||+++||+||||+||++++ +++++|++||+|||+||||++|++++|++++.+.. ....+.|++++
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~ 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh
Confidence 589999999999999999999887 89999999999999999999999999999875431 11123487765
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.61 E-value=1.3e-15 Score=130.77 Aligned_cols=58 Identities=33% Similarity=0.524 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCC
Q 029083 94 IPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 94 ~P~yL~G~~PGD~GfDPlGL~k-dpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~ 152 (199)
.|.-++|. .||++|||+||++ ++++++|+|++||+|||+||||++|++++|.++..|.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 34568898 9999999999986 5678999999999999999999999999999876663
No 14
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.58 E-value=1.2e-15 Score=134.19 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 96 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 96 ~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..+++.+|||++|||+||++|++++++++.+||+||||||+|++|+++|+++++.|+.
T Consensus 173 ~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~ 230 (252)
T PLN00147 173 EGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPI 230 (252)
T ss_pred cccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChH
Confidence 4455668999999999999999999999999999999999999999999999998874
No 15
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.56 E-value=2.8e-15 Score=128.72 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCCCC-CChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~-kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
+..|||+||||+||. +|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999994 689999999999999999999999999999999987763
No 16
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.52 E-value=5.3e-15 Score=130.81 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..+|||++|||+||++|+|+++++|.+||+||||||+|++||++|+++++.|+.
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 358999999999999999999999999999999999999999999999998864
No 17
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.47 E-value=2.8e-14 Score=126.35 Aligned_cols=54 Identities=30% Similarity=0.575 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
|..+|||+ |||+||++|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPl 236 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 44689999 9999999999999999999999999999999999999999998874
No 18
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.45 E-value=4.5e-14 Score=126.32 Aligned_cols=54 Identities=33% Similarity=0.485 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..+|||++|||+||++|+++++++|++||+||||||+|++|+++|+++++.|+.
T Consensus 212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi 265 (286)
T PLN00187 212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265 (286)
T ss_pred CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChH
Confidence 347999999999999999999999999999999999999999999999998874
No 19
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.43 E-value=8.8e-14 Score=121.97 Aligned_cols=53 Identities=32% Similarity=0.695 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhh-hccCCCC
Q 029083 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA-FNKFGAN 153 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~el-l~g~G~~ 153 (199)
+.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++|+. +++.|+.
T Consensus 164 ~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl 217 (243)
T PLN00099 164 KKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 217 (243)
T ss_pred CcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChH
Confidence 468999 8999999999999999999999999999999999999994 6777764
No 20
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.41 E-value=1.6e-13 Score=121.80 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 101 EVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~k-dpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
.+|||++|||+||.+ |+++++++|.+||+|||+||+|++|+++|+++++.|+.
T Consensus 192 ~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl 245 (267)
T PLN00098 192 GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245 (267)
T ss_pred CCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChH
Confidence 589999999999975 89999999999999999999999999999999998874
No 21
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.39 E-value=2.2e-13 Score=109.61 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 029083 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (199)
Q Consensus 97 yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~el 146 (199)
+.++..|||++|||+|+.+|+++..++|.+||+|||+||+|++|++++|.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999873
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.36 E-value=5.1e-13 Score=121.27 Aligned_cols=52 Identities=37% Similarity=0.567 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
+||+++|||+||++|+++++++|.+||+||||||+|++|+++|+++++.|+.
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPl 303 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChH
Confidence 3555569999999999999999999999999999999999999999998874
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.35 E-value=6.1e-13 Score=116.86 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=48.0
Q ss_pred CCCCCCC-----CCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 101 EVPGDYG-----YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~G-----fDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..|||.+ |||+||++|+++++++|.+||+|||+||+|++|+++|+++|+.|+.
T Consensus 170 ~~~~d~gYPgg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl 227 (244)
T PLN00097 170 DTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPV 227 (244)
T ss_pred CcccccCCCCCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHH
Confidence 3445544 9999999999999999999999999999999999999999999875
No 24
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.26 E-value=2.7e-12 Score=112.92 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..||||+|||+||++ +++|.+||+|||+||+|++|+++|+++++.|+.
T Consensus 143 ~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPl 190 (246)
T PLN00100 143 GVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190 (246)
T ss_pred CCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChH
Confidence 368999999999963 568999999999999999999999999998874
No 25
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.25 E-value=4.6e-12 Score=108.37 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=40.5
Q ss_pred CCCCCCCCCC--CCCCCC-ChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccC
Q 029083 100 GEVPGDYGYD--PFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (199)
Q Consensus 100 G~~PGD~GfD--PlGL~k-dpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~ 150 (199)
+..||||+++ ++|+.. |+|+.+++|.+||+|||+||+|++|+++||.+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5778854332 333322 78889999999999999999999999999999874
No 26
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.23 E-value=1.6e-11 Score=105.09 Aligned_cols=39 Identities=33% Similarity=0.746 Sum_probs=37.2
Q ss_pred CCCCCCC--CChhhHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 029083 108 YDPFGLS--KKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (199)
Q Consensus 108 fDPlGL~--kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~el 146 (199)
|||+||+ +|+++++++|++||+||||||||++|+++++.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 9999997 47899999999999999999999999999997
No 27
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.19 E-value=1.2e-11 Score=109.33 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCC---------ChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 102 VPGDYGYDPFGLSK---------KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~k---------dpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
+||+..|||+||++ |+++++++|.+||+|||+||++++|+++|. .++.|++
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~ 250 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPL 250 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCch
Confidence 68877799999986 789999999999999999999999999999 5787764
No 28
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.19 E-value=1.1e-11 Score=109.22 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
+||+. |||+||++++ +++.+||+||||||+|++|+++|.++|+.|+.
T Consensus 184 YPGG~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi 230 (250)
T PLN00101 184 YPGGI-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPF 230 (250)
T ss_pred CCCCc-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChH
Confidence 55553 9999998763 68999999999999999999999999998874
No 29
>PHA02337 putative high light inducible protein
Probab=97.98 E-value=3.8e-06 Score=54.41 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=27.1
Q ss_pred HHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 124 QAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 124 r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
..+|..|||+||+|++..+..|+++++++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999999998763
No 30
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.14 E-value=0.00029 Score=62.40 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 123 ~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
+.++|+.|||+||+|++..++.|.++|.|+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll 189 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLV 189 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHH
Confidence 4568999999999999999999999997763
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=96.08 E-value=0.0026 Score=54.68 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhhhhhhc-cCCCC
Q 029083 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGAN 153 (199)
Q Consensus 119 ~~~~~r~aEL~hGR~AMLa~~G~lv~ell~-g~G~~ 153 (199)
+.+..+..|+-|||+||+|++-.++.|+++ +.|+.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL 166 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPL 166 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchH
Confidence 345566779999999999999999999999 88875
No 32
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=27.18 E-value=21 Score=33.39 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=30.0
Q ss_pred hhhhhhcCCCCccccccCccCCCCCC--CCCCCCCCCCCCCCC---CCCCCC
Q 029083 70 EELAKWYGPDRRIFLPEGLLDRSEIP--EYLTGEVPGDYGYDP---FGLSKK 116 (199)
Q Consensus 70 ~~~~~wyg~~R~~~lp~G~le~~~~P--~yL~G~~PGD~GfDP---lGL~kd 116 (199)
.+.++|||+.|....- |..- .++| .|.--+..|.|+.|+ +.++.|
T Consensus 71 iDTsp~Ygqs~se~~l-g~al-~~vPR~aYyIaTKvgRy~ld~~~~Fdfsad 120 (342)
T KOG1576|consen 71 IDTSPYYGQSRSEEGL-GLAL-KDVPREAYYIATKVGRYELDYANMFDFSAD 120 (342)
T ss_pred eecCcccCcchhHHHH-HHHH-hhCChhheeeeeeeeecccCccccccchHH
Confidence 3456999999997754 3222 3444 466567788999998 555543
Done!