Query 029083
Match_columns 199
No_of_seqs 184 out of 953
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:33:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 1.3E-32 4.5E-37 236.7 11.6 117 73-193 14-141 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 5.6E-30 1.9E-34 222.3 2.6 109 74-195 5-163 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 7.7E-30 2.6E-34 224.0 2.2 113 72-195 56-168 (269)
4 2wsc_4 Chlorophyll A-B binding 99.9 3.2E-28 1.1E-32 211.7 0.5 112 73-195 45-157 (251)
5 2wsc_3 LHCA3, type II chloroph 99.9 3.3E-28 1.1E-32 214.3 -0.1 114 75-194 51-173 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 99.9 7.2E-24 2.5E-28 183.6 4.1 105 79-196 44-158 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 4E-14 1.4E-18 123.0 3.8 52 101-153 172-223 (243)
8 2wsc_3 LHCA3, type II chloroph 99.4 2.5E-14 8.4E-19 126.1 1.8 55 100-154 201-255 (276)
9 2bhw_A Chlorophyll A-B binding 99.4 1.1E-13 3.7E-18 119.0 5.0 54 99-153 153-206 (232)
10 2wsc_2 LHCA2, type II chloroph 99.4 5.6E-14 1.9E-18 123.4 0.5 55 100-154 193-248 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 5.3E-13 1.8E-17 115.6 1.2 54 99-153 164-218 (241)
12 2wsc_4 Chlorophyll A-B binding 99.1 2.2E-11 7.5E-16 105.9 1.2 48 101-154 183-230 (251)
13 3bbo_W Ribosomal protein L24; 30.3 11 0.00037 31.6 0.0 49 1-51 1-50 (191)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.98 E-value=1.3e-32 Score=236.66 Aligned_cols=117 Identities=46% Similarity=0.841 Sum_probs=97.6
Q ss_pred hhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCC
Q 029083 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 73 ~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~ 152 (199)
++|||+||++||+ +++ .+.|+||||++||||||||+||++|+|+++|||++||+||||||||++|++++|+++..|.
T Consensus 14 ~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~ 90 (232)
T 2bhw_A 14 SPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGV 90 (232)
T ss_dssp CTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCc
Confidence 3899999999994 454 6899999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCCccccccchh-hcccchhHHHH----------HHHHHHHHHHHHHHhh
Q 029083 153 NCGPEAVWFKVNLH-FSRSLLLYVVY----------LLMVLLMSCFCRLELY 193 (199)
Q Consensus 153 ~~~~~~~W~~aG~~-~~~~~l~y~g~----------~~~p~~~~~~~~~e~~ 193 (199)
... ++.|+++|.. +.+.+++|+++ ....++++++.++|.+
T Consensus 91 ~~~-~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~ 141 (232)
T 2bhw_A 91 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 141 (232)
T ss_dssp CCS-CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCc-ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 554 6789999975 44556777763 1223366666777765
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.95 E-value=5.6e-30 Score=222.29 Aligned_cols=109 Identities=30% Similarity=0.559 Sum_probs=54.7
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhh----------------------------------
Q 029083 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD---------------------------------- 119 (199)
Q Consensus 74 ~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~---------------------------------- 119 (199)
.|++++|++|+|+ .++|+||||++||||||||+||+++||.
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 3456799999996 8999999999999999999999999873
Q ss_pred ---------HHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCCCCccccccchhhcccchhHHHH-------HHHHHH
Q 029083 120 ---------FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKVNLHFSRSLLLYVVY-------LLMVLL 183 (199)
Q Consensus 120 ---------~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~~~~~W~~aG~~~~~~~l~y~g~-------~~~p~~ 183 (199)
++|||++||+||||||||++|++++|++++ ..|+++|.+...++++|+++ ....++
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~q 151 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIE 151 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHSCEEETTEEECCCHHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------cccccccccccccccccccCccchhhHHHHHHH
Confidence 789999999999999999999999999974 46999998755556677763 344557
Q ss_pred HHHHHHHHhhhh
Q 029083 184 MSCFCRLELYFL 195 (199)
Q Consensus 184 ~~~~~~~e~~~~ 195 (199)
++++.++|.+..
T Consensus 152 v~lmG~~E~~R~ 163 (243)
T 3pl9_A 152 VLVIGYIEFQRN 163 (243)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 777888887654
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.95 E-value=7.7e-30 Score=223.97 Aligned_cols=113 Identities=33% Similarity=0.609 Sum_probs=58.5
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCC
Q 029083 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 72 ~~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G 151 (199)
...|||+||++|+|+ .++|.||||++||||||||+||++|+|++++||++||+||||||||++|++++|++++.|
T Consensus 56 ~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G 130 (269)
T 2wsc_2 56 VCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130 (269)
T ss_dssp -------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTT
T ss_pred eecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCC
Confidence 456899999999996 789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCccccccchhhcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 029083 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYFL 195 (199)
Q Consensus 152 ~~~~~~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~~ 195 (199)
... .+.|+++|......... ....++++++.|+|.+..
T Consensus 131 ~~~--~p~w~~aG~~~~~~~~~----~l~~~qi~liG~~E~~r~ 168 (269)
T 2wsc_2 131 ILN--TPSWYTAGEQEYFTDTT----TLFIVELVFIGWAEGRRW 168 (269)
T ss_dssp SSS--CCCCCSTTSSSSCCCTT----SHHHHHTTHHHHHHHHHH
T ss_pred ccc--CccccccchhhhhcchH----HHHHHHHHHHHHHHHHHH
Confidence 774 35699988642111110 223446778899998753
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.94 E-value=3.2e-28 Score=211.75 Aligned_cols=112 Identities=31% Similarity=0.589 Sum_probs=59.6
Q ss_pred hhhcCC-CCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCC
Q 029083 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (199)
Q Consensus 73 ~~wyg~-~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G 151 (199)
..|||| ||++|+|+ .++|.||||++||||||||+||++|+|+++++|++||+||||||||++|++++|++++.|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 368999 89999985 789999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCccccccchhhcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 029083 152 ANCGPEAVWFKVNLHFSRSLLLYVVYLLMVLLMSCFCRLELYFL 195 (199)
Q Consensus 152 ~~~~~~~~W~~aG~~~~~~~l~y~g~~~~p~~~~~~~~~e~~~~ 195 (199)
+.. .+.|+++|.....+... ....++++++.++|.+..
T Consensus 120 ~~~--~p~w~~aG~~~~~~~~~----~l~~~qi~liG~~E~~r~ 157 (251)
T 2wsc_4 120 IIN--VPKWYAAGKEEYFASSS----TLFVIEFILSHYVEIRRW 157 (251)
T ss_dssp SSC--CCCCSCCCSSSCSSCSS----CTTTTHHHHHHTTTHHHH
T ss_pred ccC--CccccccchHhhhccch----HHHHHHHHHHHHHHHHHh
Confidence 874 45799988642111110 112235667888898653
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.93 E-value=3.3e-28 Score=214.31 Aligned_cols=114 Identities=32% Similarity=0.522 Sum_probs=59.9
Q ss_pred hcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhH------HHHHHHHHhhcchhhhhhhhhhhhhhhc
Q 029083 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFN 148 (199)
Q Consensus 75 wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~------~~~r~aEL~hGR~AMLa~~G~lv~ell~ 148 (199)
+||+||++|+|+ .+.|+||||++||||||||+|| .|++++ +++|++||+||||||||++|++++|+++
T Consensus 51 ~~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~ 124 (276)
T 2wsc_3 51 KQGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILG 124 (276)
T ss_dssp ----------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCS
T ss_pred ccCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhc
Confidence 389999999995 7899999999999999999999 788989 9999999999999999999999999999
Q ss_pred cCCCCCCC-CccccccchhhcccchhHHHH--HHHHHHHHHHHHHHhhh
Q 029083 149 KFGANCGP-EAVWFKVNLHFSRSLLLYVVY--LLMVLLMSCFCRLELYF 194 (199)
Q Consensus 149 g~G~~~~~-~~~W~~aG~~~~~~~l~y~g~--~~~p~~~~~~~~~e~~~ 194 (199)
+.|..... ...|++++.....+...|+++ ..+.++++++.++|.+.
T Consensus 125 ~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r 173 (276)
T 2wsc_3 125 KAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRR 173 (276)
T ss_dssp SCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTT
T ss_pred ccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 98876432 234999777655555566553 23445778889999865
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.88 E-value=7.2e-24 Score=183.60 Aligned_cols=105 Identities=31% Similarity=0.660 Sum_probs=62.8
Q ss_pred CCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCCCCCc
Q 029083 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (199)
Q Consensus 79 ~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~~~~~ 158 (199)
.|.+|+|+ .+.|+||+|++||||||||+||++|+|+++|+|++||+||||||||++|++++|+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45678986 7899999999999999999999999999999999999999999999999999999864 2
Q ss_pred cccccchh--hcccchhHHHH--------HHHHHHHHHHHHHHhhhhh
Q 029083 159 VWFKVNLH--FSRSLLLYVVY--------LLMVLLMSCFCRLELYFLM 196 (199)
Q Consensus 159 ~W~~aG~~--~~~~~l~y~g~--------~~~p~~~~~~~~~e~~~~~ 196 (199)
.|++++.. +..+...|+++ ....++++.+.++|.+..+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~ 158 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSM 158 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTS
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35544321 11222233221 3334566777788876443
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.43 E-value=4e-14 Score=122.97 Aligned_cols=52 Identities=37% Similarity=0.589 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
.+|||+ |||+||++|+++++++|.+||+|||+||+|++|+++++++++.|+.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 579999 9999999999999999999999999999999999999999998864
No 8
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.42 E-value=2.5e-14 Score=126.09 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCC
Q 029083 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (199)
Q Consensus 100 G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~ 154 (199)
..+|||++|||+||++++++++++|++||+||||||||++|++++|++++.|+..
T Consensus 201 ~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 201 PAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp CTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred ccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 4579999999999999988899999999999999999999999999999988753
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.41 E-value=1.1e-13 Score=119.05 Aligned_cols=54 Identities=30% Similarity=0.568 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
|+.+|||+ |||+||.+|+++++++|.+||+|||+||+|++|+++++++++.|+.
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~ 206 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 206 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSH
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChH
Confidence 45689998 9999999999999999999999999999999999999999998874
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.37 E-value=5.6e-14 Score=123.43 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCCC-ChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCC
Q 029083 100 GEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (199)
Q Consensus 100 G~~PGD~GfDPlGL~k-dpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~ 154 (199)
..+|||++|||+||.+ |+|+++++|.+||+|||+||||++|++++|++++.|+..
T Consensus 193 ~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 193 VGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp CSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred cCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 3689999999999985 788899999999999999999999999999999998753
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.28 E-value=5.3e-13 Score=115.62 Aligned_cols=54 Identities=30% Similarity=0.612 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhh-hhccCCCC
Q 029083 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153 (199)
Q Consensus 99 ~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~e-ll~g~G~~ 153 (199)
++.+||| +|||+||.+|+++++++|.+||+|||+||+|++|+++++ .+++.|+.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl 218 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPL 218 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchH
Confidence 4568998 599999999999999999999999999999999999999 57888875
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.07 E-value=2.2e-11 Score=105.93 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCCC
Q 029083 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (199)
Q Consensus 101 ~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~~ 154 (199)
.+|||+ |||+|+.+ ++++|.+||+|||+ |+|++|+++|+++++.|+..
T Consensus 183 ~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~ 230 (251)
T 2wsc_4 183 GYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFD 230 (251)
T ss_dssp HSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCC
T ss_pred cCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHH
Confidence 369998 99999976 56789999999999 99999999999999998753
No 13
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.26 E-value=11 Score=31.60 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=0.0
Q ss_pred Cccccc-ccCcccccccccccCCccccccccccCCCCCCCCCCCcceEeeec
Q 029083 1 MASLAA-SSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSK 51 (199)
Q Consensus 1 ma~~~~-~~~~~~~~~~s~~lg~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~ 51 (199)
||+.+. ++.++.|++++.|+|.|+.. ... +..+..++....-+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~ 50 (191)
T 3bbo_W 1 MAAMVLQSSFTSLSLSSNSFLGQRLFP-SPT-TLQVKTEGHSPCLIVMRIKR 50 (191)
T ss_dssp ----------------------------------------------------
T ss_pred CcchhhhhhhhccccccccccCcccCC-Ccc-ccCcccccCCceeeEecccH
Confidence 565433 34455577789999999941 111 22233333334445665554
Done!