Query 029083
Match_columns 199
No_of_seqs 184 out of 953
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 11:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029083.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029083hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 100.0 2.1E-32 1.6E-36 229.3 4.8 100 73-176 1-101 (218)
2 d1rwta_ f.43.1.1 (A:) Chloroph 99.4 3.6E-14 2.7E-18 117.7 4.7 51 102-153 143-193 (218)
3 d2co8a1 g.39.1.3 (A:44-76) Ned 10.5 32 0.0023 19.7 0.4 9 102-110 10-18 (33)
4 d1bdsa_ g.9.1.1 (A:) BDs-I def 6.6 91 0.0066 18.3 1.3 12 98-109 18-29 (43)
5 d1vkpa_ d.126.1.6 (A:) Agmatin 5.6 95 0.0069 25.4 1.3 32 69-100 192-223 (372)
6 d1sgva1 b.122.1.1 (A:236-292) 5.2 1E+02 0.0073 19.2 0.9 11 123-133 9-19 (57)
7 d1zbra1 d.126.1.6 (A:3-341) Pu 4.9 1.2E+02 0.0088 24.3 1.4 32 69-100 178-209 (339)
8 d2cara1 c.51.4.1 (A:1-194) Ino 3.7 2.3E+02 0.017 20.6 2.1 34 105-138 148-185 (194)
9 d2cvoa1 c.2.1.3 (A:68-218,A:38 3.0 98 0.0071 22.2 -0.8 17 132-148 7-23 (183)
10 d2g7ja1 d.198.5.1 (A:1-112) Pu 3.0 2E+02 0.015 20.1 1.0 23 92-115 76-98 (112)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.97 E-value=2.1e-32 Score=229.34 Aligned_cols=100 Identities=49% Similarity=0.936 Sum_probs=84.9
Q ss_pred hhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCC
Q 029083 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (199)
Q Consensus 73 ~~wyg~~R~~~lp~G~le~~~~P~yL~G~~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~ 152 (199)
++||||||++|+| ++. ++.|+||||++||||||||+||++|+++++|+|++|||||||||||++|++++|+++..+.
T Consensus 1 ~~~~~~~r~~~~~--~~~-~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~ 77 (218)
T d1rwta_ 1 SPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 77 (218)
T ss_dssp CTTSSTTCCCTTG--GGG-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCcccCC--ccc-cCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCC
Confidence 3799999999996 343 6789999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCCCccccccchhhc-ccchhHHH
Q 029083 153 NCGPEAVWFKVNLHFS-RSLLLYVV 176 (199)
Q Consensus 153 ~~~~~~~W~~aG~~~~-~~~l~y~g 176 (199)
... ...|++++.... .+.+.+++
T Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~~ 101 (218)
T d1rwta_ 78 KFG-EAVWFKAGSQIFSEGGLDYLG 101 (218)
T ss_dssp CCS-CCSHHHHGGGGGSTTCBCGGG
T ss_pred CCC-CcccccccccccCcchhhhhc
Confidence 543 578888777633 33444444
No 2
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.42 E-value=3.6e-14 Score=117.74 Aligned_cols=51 Identities=29% Similarity=0.610 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHhhcchhhhhhhhhhhhhhhccCCCC
Q 029083 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (199)
Q Consensus 102 ~PGD~GfDPlGL~kdpe~~~~~r~aEL~hGR~AMLa~~G~lv~ell~g~G~~ 153 (199)
.+| .+|||+++.+++|+++++|.+||+||||||||++|+++||++++.|+.
T Consensus 143 ~~~-g~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~ 193 (218)
T d1rwta_ 143 YPG-GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 193 (218)
T ss_dssp CCC-GGGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred CCC-CCccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHH
Confidence 344 489999999999999999999999999999999999999999998874
No 3
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.49 E-value=32 Score=19.71 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=6.6
Q ss_pred CCCCCCCCC
Q 029083 102 VPGDYGYDP 110 (199)
Q Consensus 102 ~PGD~GfDP 110 (199)
-||+|+++|
T Consensus 10 ~pG~Y~qhp 18 (33)
T d2co8a1 10 WPGGYEQHP 18 (33)
T ss_dssp CTTSEECCT
T ss_pred ccCcccCCC
Confidence 377888777
No 4
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=6.64 E-value=91 Score=18.32 Aligned_cols=12 Identities=58% Similarity=1.298 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q 029083 98 LTGEVPGDYGYD 109 (199)
Q Consensus 98 L~G~~PGD~GfD 109 (199)
|.|+-||.|||.
T Consensus 18 lrgtcpggygyt 29 (43)
T d1bdsa_ 18 LRGTCPGGYGYT 29 (43)
T ss_dssp SCSSCCTTTCCC
T ss_pred EecccCCCcccc
Confidence 568899999873
No 5
>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.61 E-value=95 Score=25.42 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=24.4
Q ss_pred hhhhhhhcCCCCccccccCccCCCCCCCCCCC
Q 029083 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100 (199)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G 100 (199)
..++..++|-++.+|||.|+++..+.-.+.|+
T Consensus 192 e~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~ 223 (372)
T d1vkpa_ 192 EEELKKYLGVQSFIWLPRGLYGDEDTNGHIDN 223 (372)
T ss_dssp HHHHHHHHCCCEEEEESCCCTTCTTTTCCGGG
T ss_pred HHHHHHhhCCceEEEEcCcccCCCCCccchhh
Confidence 67888999999999999888763344455554
No 6
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.24 E-value=1e+02 Score=19.15 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=8.6
Q ss_pred HHHHHHhhcch
Q 029083 123 YQAYELIHARW 133 (199)
Q Consensus 123 ~r~aEL~hGR~ 133 (199)
-+..||.||||
T Consensus 9 ~Ea~~l~~Gr~ 19 (57)
T d1sgva1 9 AEASAAANGRS 19 (57)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCc
Confidence 35679999995
No 7
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.88 E-value=1.2e+02 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.8
Q ss_pred hhhhhhhcCCCCccccccCccCCCCCCCCCCC
Q 029083 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100 (199)
Q Consensus 69 ~~~~~~wyg~~R~~~lp~G~le~~~~P~yL~G 100 (199)
..++..++|-++.+|||.|.++..+.-.+.|+
T Consensus 178 e~~L~~~lg~~kviwl~~G~~~~DdTdGHID~ 209 (339)
T d1zbra1 178 IDTLKESLGVSRVLSLRHGALAGDDTDGHIDT 209 (339)
T ss_dssp HHHHHHHSCCSEEEEESSCCCTTCCSSSCGGG
T ss_pred HHHHHHhcCCceEEecCCCCcCCcccccccce
Confidence 67888999999999999887763344445554
No 8
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase, ITPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=2.3e+02 Score=20.63 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=17.3
Q ss_pred CCCCCCCC----CCCChhhHHHHHHHHHhhcchhhhhh
Q 029083 105 DYGYDPFG----LSKKPDDFSKYQAYELIHARWAMLGA 138 (199)
Q Consensus 105 D~GfDPlG----L~kdpe~~~~~r~aEL~hGR~AMLa~ 138 (199)
.|||||+- ..++-.++..-.-..+.|=.-|+--+
T Consensus 148 GFGYDpiFip~g~~kT~aEm~~~eKn~iSHR~~A~~kl 185 (194)
T d2cara1 148 DFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFRALLEL 185 (194)
T ss_dssp TSTTGGGEEETTCSSCTTTSCHHHHHHHCHHHHHHHHH
T ss_pred CCCCceEEEeCCCCcchhhCCHHHhhhcCHHHHHHHHH
Confidence 48899963 33333333222333566655665443
No 9
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=3.00 E-value=98 Score=22.22 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=14.9
Q ss_pred chhhhhhhhhhhhhhhc
Q 029083 132 RWAMLGAAGFIIPEAFN 148 (199)
Q Consensus 132 R~AMLa~~G~lv~ell~ 148 (199)
|.|.+|..|++-+|++.
T Consensus 7 kVaIlGATGyvG~elir 23 (183)
T d2cvoa1 7 RIAVLGASGYTGAEIVR 23 (183)
T ss_dssp EEEEESCSSHHHHHHHH
T ss_pred EEEEECcccHHHHHHHH
Confidence 68999999999999854
No 10
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=2.97 E-value=2e+02 Score=20.07 Aligned_cols=23 Identities=43% Similarity=0.846 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 029083 92 SEIPEYLTGEVPGDYGYDPFGLSK 115 (199)
Q Consensus 92 ~~~P~yL~G~~PGD~GfDPlGL~k 115 (199)
.+.|.||.|+...-||- |.||+.
T Consensus 76 ~~FPlyl~g~~~~~yGI-phGFsS 98 (112)
T d2g7ja1 76 QNFPLYLGGETHEHYGI-PHGFSS 98 (112)
T ss_dssp CCSCCCCSSSSCCEEEC-EECCSC
T ss_pred hcCCccccccchhhcCC-Ccccch
Confidence 36788999988877775 777764
Done!