Query 029084
Match_columns 199
No_of_seqs 107 out of 881
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1025 Ptr Secreted/periplasm 100.0 3.5E-32 7.6E-37 243.7 21.7 197 1-199 520-717 (937)
2 KOG0959 N-arginine dibasic con 100.0 4.4E-31 9.5E-36 239.7 20.5 184 1-186 528-711 (974)
3 PRK15101 protease3; Provisiona 99.9 1.4E-25 3.1E-30 209.8 23.6 185 1-187 541-726 (961)
4 COG0612 PqqL Predicted Zn-depe 99.5 1.9E-13 4.1E-18 118.2 14.4 182 4-187 36-225 (438)
5 TIGR02110 PQQ_syn_pqqF coenzym 99.5 2E-12 4.4E-17 116.7 19.4 183 3-187 18-212 (696)
6 PRK15101 protease3; Provisiona 99.3 9E-11 2E-15 110.5 16.1 184 4-189 63-259 (961)
7 KOG0960 Mitochondrial processi 99.0 8.9E-09 1.9E-13 85.8 13.1 181 4-186 52-240 (467)
8 PF00675 Peptidase_M16: Insuli 98.8 5E-08 1.1E-12 72.1 10.7 125 3-128 9-138 (149)
9 PTZ00432 falcilysin; Provision 98.7 2.1E-07 4.4E-12 89.0 14.3 178 5-188 114-332 (1119)
10 KOG2067 Mitochondrial processi 98.6 3.6E-07 7.8E-12 76.5 10.3 189 5-196 44-240 (472)
11 KOG2583 Ubiquinol cytochrome c 97.7 0.0032 6.9E-08 53.2 15.4 171 3-181 40-221 (429)
12 COG1025 Ptr Secreted/periplasm 97.3 0.015 3.2E-07 54.4 15.6 184 4-190 43-240 (937)
13 COG0612 PqqL Predicted Zn-depe 97.0 0.011 2.5E-07 51.2 11.7 98 71-170 331-432 (438)
14 KOG2067 Mitochondrial processi 97.0 0.0076 1.7E-07 51.1 10.0 151 21-181 301-456 (472)
15 KOG0959 N-arginine dibasic con 97.0 0.03 6.5E-07 52.9 14.7 179 7-187 50-242 (974)
16 COG1026 Predicted Zn-dependent 96.6 0.0094 2E-07 55.8 8.3 166 5-181 41-236 (978)
17 PTZ00432 falcilysin; Provision 95.7 0.38 8.2E-06 46.9 14.5 176 8-186 683-898 (1119)
18 KOG0961 Predicted Zn2+-depende 95.4 0.044 9.6E-07 49.7 6.5 129 62-193 101-243 (1022)
19 PF05193 Peptidase_M16_C: Pept 95.4 0.14 3E-06 37.8 8.5 95 6-101 79-184 (184)
20 COG1026 Predicted Zn-dependent 95.3 2.8 6.1E-05 39.9 18.7 161 7-172 549-745 (978)
21 KOG0960 Mitochondrial processi 93.7 0.77 1.7E-05 39.3 9.5 163 3-170 267-450 (467)
22 KOG2019 Metalloendoprotease HM 89.7 0.84 1.8E-05 41.9 5.7 69 113-182 202-273 (998)
23 KOG0961 Predicted Zn2+-depende 89.6 1.8 4E-05 39.7 7.8 122 50-173 619-760 (1022)
24 PF08367 M16C_assoc: Peptidase 89.1 2.8 6.2E-05 33.5 8.0 108 7-117 92-218 (248)
25 KOG2019 Metalloendoprotease HM 78.3 60 0.0013 30.4 13.8 145 24-169 329-496 (998)
26 PF01729 QRPTase_C: Quinolinat 75.5 1 2.2E-05 34.1 0.3 56 140-197 107-163 (169)
27 PRK08385 nicotinate-nucleotide 65.1 12 0.00026 30.7 4.4 57 139-197 208-267 (278)
28 PRK06559 nicotinate-nucleotide 63.6 13 0.00028 30.8 4.3 64 130-197 205-277 (290)
29 COG0157 NadC Nicotinate-nucleo 57.9 21 0.00045 29.3 4.5 65 130-196 196-269 (280)
30 PF12674 Zn_ribbon_2: Putative 57.7 19 0.00041 23.7 3.6 38 140-185 40-77 (81)
31 PRK07896 nicotinate-nucleotide 56.3 21 0.00045 29.5 4.4 65 131-197 208-282 (289)
32 PRK06978 nicotinate-nucleotide 55.8 21 0.00045 29.6 4.3 63 130-196 213-284 (294)
33 PRK06543 nicotinate-nucleotide 51.7 25 0.00055 28.9 4.1 62 131-196 202-272 (281)
34 PRK09016 quinolinate phosphori 51.3 28 0.0006 28.9 4.3 62 131-196 217-287 (296)
35 PF00531 Death: Death domain; 51.0 37 0.00079 21.6 4.2 43 113-155 39-83 (83)
36 PRK06106 nicotinate-nucleotide 48.7 27 0.00058 28.8 3.8 63 131-197 203-274 (281)
37 COG3411 Ferredoxin [Energy pro 48.7 31 0.00068 21.6 3.3 24 159-183 23-46 (64)
38 PRK05848 nicotinate-nucleotide 48.3 31 0.00067 28.3 4.2 53 139-193 208-261 (273)
39 PRK07428 nicotinate-nucleotide 44.7 37 0.00081 28.0 4.1 66 129-196 203-278 (288)
40 TIGR01334 modD putative molybd 43.1 45 0.00099 27.4 4.4 60 130-191 196-265 (277)
41 PRK14420 acylphosphatase; Prov 41.7 62 0.0013 21.5 4.2 39 45-83 24-63 (91)
42 PRK05742 nicotinate-nucleotide 39.4 46 0.001 27.3 3.9 63 130-196 197-268 (277)
43 KOG2583 Ubiquinol cytochrome c 38.8 2.7E+02 0.0058 24.3 10.6 105 58-170 313-421 (429)
44 PRK14425 acylphosphatase; Prov 38.6 66 0.0014 21.7 4.0 38 45-82 28-66 (94)
45 smart00311 PWI PWI, domain in 38.3 1.1E+02 0.0023 19.6 5.4 62 94-158 6-68 (74)
46 PRK14429 acylphosphatase; Prov 38.3 75 0.0016 21.1 4.2 38 45-82 24-62 (90)
47 TIGR01669 phage_XkdX phage unc 37.8 18 0.00038 21.0 0.9 35 143-178 5-41 (45)
48 PF09851 SHOCT: Short C-termin 37.5 65 0.0014 16.8 3.7 26 77-102 5-30 (31)
49 PF09568 RE_MjaI: MjaI restric 37.1 55 0.0012 24.8 3.6 24 132-155 60-83 (170)
50 PRK14430 acylphosphatase; Prov 36.3 73 0.0016 21.4 3.9 37 44-80 25-62 (92)
51 PRK14440 acylphosphatase; Prov 35.7 75 0.0016 21.2 3.9 37 45-81 25-62 (90)
52 PRK14449 acylphosphatase; Prov 35.6 85 0.0018 20.9 4.1 39 45-83 25-64 (90)
53 PRK06096 molybdenum transport 35.5 68 0.0015 26.5 4.3 60 130-191 197-266 (284)
54 PRK14431 acylphosphatase; Prov 35.0 78 0.0017 21.1 3.8 38 45-82 24-61 (89)
55 PF14162 YozD: YozD-like prote 34.9 36 0.00077 20.4 1.9 37 113-149 10-46 (57)
56 TIGR03853 matur_matur probable 33.1 88 0.0019 20.4 3.6 24 116-139 3-27 (77)
57 PRK14435 acylphosphatase; Prov 32.8 95 0.0021 20.7 4.0 37 45-81 24-61 (90)
58 PF00708 Acylphosphatase: Acyl 32.2 1.1E+02 0.0024 20.2 4.3 38 45-82 26-64 (91)
59 PRK14444 acylphosphatase; Prov 32.2 93 0.002 20.8 3.9 37 45-81 26-63 (92)
60 PRK14451 acylphosphatase; Prov 31.7 1E+02 0.0022 20.5 4.0 38 44-81 24-62 (89)
61 KOG0088 GTPase Rab21, small G 31.3 1.2E+02 0.0025 23.1 4.5 33 142-175 99-134 (218)
62 PRK14436 acylphosphatase; Prov 31.1 1E+02 0.0022 20.6 3.9 37 45-81 26-63 (91)
63 cd01572 QPRTase Quinolinate ph 30.8 73 0.0016 25.9 3.8 63 129-195 189-260 (268)
64 PRK14428 acylphosphatase; Prov 30.7 1E+02 0.0022 21.0 3.9 37 45-81 30-67 (97)
65 PRK14445 acylphosphatase; Prov 30.5 1.1E+02 0.0023 20.4 4.0 37 45-81 26-63 (91)
66 cd08803 Death_ank3 Death domai 30.3 65 0.0014 21.3 2.8 40 111-150 41-82 (84)
67 cd08317 Death_ank Death domain 29.7 88 0.0019 20.4 3.4 38 113-150 43-82 (84)
68 PRK14446 acylphosphatase; Prov 29.5 1E+02 0.0022 20.5 3.7 37 45-81 24-61 (88)
69 PRK14427 acylphosphatase; Prov 29.5 1.3E+02 0.0027 20.3 4.2 39 45-83 28-67 (94)
70 PLN02716 nicotinate-nucleotide 29.2 90 0.002 26.1 4.1 51 143-197 248-298 (308)
71 PRK14447 acylphosphatase; Prov 29.1 1.1E+02 0.0025 20.5 4.0 37 45-81 26-64 (95)
72 PRK14438 acylphosphatase; Prov 28.9 1.2E+02 0.0026 20.2 4.0 37 45-81 25-62 (91)
73 PF14425 Imm3: Immunity protei 28.9 2.1E+02 0.0047 20.3 6.9 105 75-198 8-116 (117)
74 PF00017 SH2: SH2 domain; Int 28.9 30 0.00065 21.8 1.0 16 164-180 2-17 (77)
75 PF10678 DUF2492: Protein of u 28.7 1.2E+02 0.0026 19.9 3.8 25 115-139 4-29 (78)
76 PRK14422 acylphosphatase; Prov 28.7 1.3E+02 0.0028 20.2 4.1 39 45-83 28-67 (93)
77 PRK14448 acylphosphatase; Prov 28.6 1.2E+02 0.0026 20.1 4.0 37 45-81 24-61 (90)
78 PRK14424 acylphosphatase; Prov 28.5 1.2E+02 0.0026 20.5 3.9 37 45-81 29-66 (94)
79 PRK14426 acylphosphatase; Prov 27.7 1.3E+02 0.0028 20.1 4.0 39 44-82 25-64 (92)
80 PF10978 DUF2785: Protein of u 27.3 2.7E+02 0.0059 20.9 6.2 81 60-142 59-143 (175)
81 PF10369 ALS_ss_C: Small subun 27.2 69 0.0015 20.5 2.5 27 55-81 31-57 (75)
82 PRK14423 acylphosphatase; Prov 27.1 1.3E+02 0.0029 20.0 4.0 37 45-81 27-64 (92)
83 PTZ00179 60S ribosomal protein 26.9 2.2E+02 0.0047 22.0 5.6 53 20-72 60-119 (189)
84 TIGR00078 nadC nicotinate-nucl 26.7 86 0.0019 25.5 3.5 61 129-193 185-254 (265)
85 PRK14442 acylphosphatase; Prov 26.6 1.3E+02 0.0029 20.0 3.9 37 45-81 26-63 (91)
86 PF07521 RMMBL: RNA-metabolisi 26.3 93 0.002 17.5 2.7 24 141-166 17-40 (43)
87 PRK14443 acylphosphatase; Prov 26.1 1.3E+02 0.0029 20.2 3.8 38 45-82 26-64 (93)
88 PRK02260 S-ribosylhomocysteina 25.8 1.6E+02 0.0034 22.1 4.4 25 161-186 87-111 (158)
89 TIGR02110 PQQ_syn_pqqF coenzym 25.6 2.2E+02 0.0047 26.8 6.3 58 31-88 469-526 (696)
90 PRK14836 undecaprenyl pyrophos 25.3 3.7E+02 0.008 21.8 8.0 88 25-128 80-181 (253)
91 COG1054 Predicted sulfurtransf 25.3 1.3E+02 0.0027 25.2 4.2 132 47-180 31-194 (308)
92 PF04444 Dioxygenase_N: Catech 25.1 1.9E+02 0.0042 18.6 4.2 34 73-106 8-41 (74)
93 PRK14433 acylphosphatase; Prov 25.0 1.6E+02 0.0034 19.5 4.0 37 45-81 23-60 (87)
94 smart00252 SH2 Src homology 2 24.9 50 0.0011 21.1 1.5 16 164-180 4-19 (84)
95 PRK14421 acylphosphatase; Prov 24.8 1.5E+02 0.0032 20.3 3.9 37 45-81 26-63 (99)
96 cd01568 QPRTase_NadC Quinolina 24.5 1.1E+02 0.0024 24.8 3.8 53 129-182 188-249 (269)
97 PF09840 DUF2067: Uncharacteri 24.3 2.5E+02 0.0055 21.6 5.5 37 50-86 24-60 (190)
98 COG3492 Uncharacterized protei 24.3 1.4E+02 0.0031 20.1 3.5 60 117-181 15-75 (104)
99 PRK14434 acylphosphatase; Prov 24.0 1.9E+02 0.004 19.4 4.2 38 45-82 24-64 (92)
100 PRK14441 acylphosphatase; Prov 23.7 1.6E+02 0.0036 19.6 3.9 37 45-81 27-64 (93)
101 PF02664 LuxS: S-Ribosylhomocy 23.7 2E+02 0.0043 21.6 4.6 37 159-196 85-121 (157)
102 KOG3460 Small nuclear ribonucl 23.3 29 0.00063 22.9 0.1 46 61-106 27-72 (91)
103 PRK05986 cob(I)alamin adenolsy 23.1 2.2E+02 0.0048 22.0 5.0 62 117-181 103-169 (191)
104 PRK00810 nifW nitrogenase stab 22.9 2.2E+02 0.0047 20.1 4.4 43 74-116 39-85 (113)
105 PRK14452 acylphosphatase; Prov 22.8 1.6E+02 0.0035 20.4 3.8 36 45-80 42-78 (107)
106 PRK14437 acylphosphatase; Prov 22.7 1.7E+02 0.0038 20.3 4.0 37 45-81 45-82 (109)
107 cd03063 TRX_Fd_FDH_beta TRX-li 22.7 1E+02 0.0023 20.7 2.8 20 163-183 60-79 (92)
108 KOG4107 MP1 adaptor interactin 22.6 2.6E+02 0.0056 19.4 4.6 47 38-84 6-52 (125)
109 PRK14450 acylphosphatase; Prov 22.6 1.8E+02 0.0039 19.3 4.0 37 45-81 24-62 (91)
110 PF03953 Tubulin_C: Tubulin C- 22.2 1.4E+02 0.003 21.0 3.5 32 161-194 54-85 (126)
111 PTZ00450 macrophage migration 21.9 1.9E+02 0.0042 20.2 4.1 37 158-195 59-95 (113)
112 KOG1684 Enoyl-CoA hydratase [L 21.8 1.3E+02 0.0028 25.9 3.7 90 2-111 168-257 (401)
113 cd00173 SH2 Src homology 2 dom 21.8 64 0.0014 20.9 1.6 16 164-180 3-18 (94)
114 TIGR03653 arch_L6P archaeal ri 21.7 3.5E+02 0.0076 20.4 5.8 53 20-72 53-112 (170)
115 PF11693 DUF2990: Protein of u 20.9 92 0.002 19.4 2.0 23 65-87 17-39 (64)
116 cd04755 Commd7 COMM_Domain con 20.9 3.9E+02 0.0085 20.4 6.2 75 71-148 10-88 (180)
117 PRK14135 recX recombination re 20.9 3.1E+02 0.0066 21.9 5.7 50 92-142 210-259 (263)
118 PRK14432 acylphosphatase; Prov 20.6 2.3E+02 0.005 19.0 4.1 39 45-83 24-64 (93)
119 PRK14834 undecaprenyl pyrophos 20.3 4.7E+02 0.01 21.1 9.4 136 25-181 80-233 (249)
120 cd08805 Death_ank1 Death domai 20.1 1.9E+02 0.0042 19.1 3.6 57 87-151 25-83 (84)
No 1
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-32 Score=243.65 Aligned_cols=197 Identities=27% Similarity=0.453 Sum_probs=189.7
Q ss_pred CCCC-ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHH
Q 029084 1 MFST-PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (199)
Q Consensus 1 ~F~~-Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~ 79 (199)
.|.+ ||+.+.+.|++|.+..+|+++|+.++++.++++.|.+..|+|..||+++++.++.+|+.|+++||+++++.++..
T Consensus 520 ~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~ 599 (937)
T COG1025 520 YFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRA 599 (937)
T ss_pred ccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHH
Confidence 3778 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccc
Q 029084 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (199)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~ 159 (199)
+++.+....+++++|+.+|+++.++|++...+.|++++.+.+..++..++|+.+|++++|++++++++.+|+..++++.+
T Consensus 600 ~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~ 679 (937)
T COG1025 600 FLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVH 679 (937)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCCCC
Q 029084 160 LECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHPSI 199 (199)
Q Consensus 160 ~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
++.+|+| |++.++|.++.... .+++...++.||++|++
T Consensus 680 lE~lv~G-n~~~~da~~l~~~~-~~~l~~~~s~~~~~~~~ 717 (937)
T COG1025 680 LEMLVLG-NLTEADATNLAETL-QKKLPAIGSTWYRNPSV 717 (937)
T ss_pred eeeeeec-cchHHHHHHHHHHH-HhhhcccCCcccCCCce
Confidence 9999999 99999999999755 47778888888888863
No 2
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.4e-31 Score=239.66 Aligned_cols=184 Identities=39% Similarity=0.655 Sum_probs=178.5
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHH
Q 029084 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 1 ~F~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i 80 (199)
+|++||+.+.+.+.+|.+..+|.+++++.+|+.++++.++|..|+|..||++|+++.+.+|+.++|+||++|++.+++.+
T Consensus 528 ~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~ 607 (974)
T KOG0959|consen 528 KFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKV 607 (974)
T ss_pred ccccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccce
Q 029084 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (199)
++.+.++.+++++|+.+|+.+.+.|+|...++|+.+|.+++..++.+..|+.++++++|++++++|+..|...++++.++
T Consensus 608 ~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~ 687 (974)
T KOG0959|consen 608 VQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL 687 (974)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 161 ECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 161 ~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
+++|+| |++.++|.++++... +.+
T Consensus 688 e~~i~G-N~te~~A~~l~~~v~-d~l 711 (974)
T KOG0959|consen 688 ELLIHG-NLTEKEALQLLKSVL-DIL 711 (974)
T ss_pred EEEEec-CcchHHHHHHHHHHH-hhh
Confidence 999999 999999999876665 444
No 3
>PRK15101 protease3; Provisional
Probab=99.94 E-value=1.4e-25 Score=209.84 Aligned_cols=185 Identities=19% Similarity=0.286 Sum_probs=174.4
Q ss_pred CC-CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHH
Q 029084 1 MF-STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (199)
Q Consensus 1 ~F-~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~ 79 (199)
.| ++||+.+.+.|.+|...+++++.+++.+++.++++.+++..|.|..||++++++ +.+|+.++++||+++++.+++.
T Consensus 541 ~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~ 619 (961)
T PRK15101 541 YFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQA 619 (961)
T ss_pred ccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHH
Confidence 37 599999999999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred HHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccc
Q 029084 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTF 159 (199)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~ 159 (199)
+++.+.++.+++++|++.|+.+++++++.....|+.++...+..+..+++|+..++.++|+++|++|+.+|+++++++.+
T Consensus 620 l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 699 (961)
T PRK15101 620 LLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGAT 699 (961)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhce
Confidence 99999999999999999999999999999888899999987777777778878889999999999999999999999999
Q ss_pred eeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 160 LECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 160 ~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
++++|+| |+++++|..+++.+++.++.
T Consensus 700 ~~~~v~G-Ni~~~ea~~l~~~~~~~l~~ 726 (961)
T PRK15101 700 PEFLVVG-NLTEEQVTTLARDVQKQLGA 726 (961)
T ss_pred EEEEEEc-CCCHHHHHHHHHHHHHHhcc
Confidence 9999999 99999999999988766643
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.53 E-value=1.9e-13 Score=118.24 Aligned_cols=182 Identities=11% Similarity=0.060 Sum_probs=158.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.|.+.+.+.+..+....++...+++.++..|+-+... +.....+..|...+...+.+.....++-.+++++..++
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~ 115 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALD 115 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHH
Confidence 6899999999988888899999999999999976632 46666777787766666655555555567899999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC-CC--CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QT--WPWMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~--~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
.+.+.+.++.++++.|++.|..++.+++....+ |...+...+...++. ++ +++....+.++++|.+|+.+|+++|+
T Consensus 116 llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y 194 (438)
T COG0612 116 LLADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194 (438)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhc
Confidence 999999999999999999999999999999888 999999999888886 34 44567889999999999999999999
Q ss_pred cccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 156 SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 156 ~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
.+.++.++|+| |++.+++.+++.+.+++++.
T Consensus 195 ~p~n~~l~vvG-di~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 195 QPDNMVLVVVG-DVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred CcCceEEEEec-CCCHHHHHHHHHHHHccCCc
Confidence 99999999999 99999999999999977776
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.51 E-value=2e-12 Score=116.72 Aligned_cols=183 Identities=11% Similarity=-0.021 Sum_probs=154.4
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~------e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~l 76 (199)
..|.+.+.+.++.++..+.+...+++.++..|+-.... ++....+..|.+++.+.+.+...+.+...+++++..
T Consensus 18 ~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~a 97 (696)
T TIGR02110 18 DAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAG 97 (696)
T ss_pred CCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHH
Confidence 35889999999999998888899999999999976542 244445557888888888889999999999999999
Q ss_pred HHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC-CCCC-----HHHHHhhCCCCCHHHHHHH
Q 029084 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP-----WMEELEVLPHLEAEDLAKF 150 (199)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~-----~~~~l~~L~~it~ed~~~f 150 (199)
++.+.+.+.++.++++.|++.|+.+..+++....+ |..++...+...++. +.|. ..+.++.+..++.+|+.+|
T Consensus 98 L~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~dd-p~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F 176 (696)
T TIGR02110 98 LARLCDMLARPLLTAEDQQREREVLEAEYIAWQND-ADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDF 176 (696)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHH
Confidence 99999999999999999999999999999987655 889999988888774 3443 3334444444569999999
Q ss_pred HHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 151 VPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 151 ~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
+++++.+.++.+.|+| |++.+++.+++.++++..+.
T Consensus 177 ~~~~Y~p~NmvLvIvG-dvs~eel~~l~e~~f~~~~~ 212 (696)
T TIGR02110 177 HRRHYQAGNMQLWLQG-PQSLDELEQLAARFGASLAA 212 (696)
T ss_pred HHHhcchhcEEEEEEe-CCCHHHHHHHHHHHhCCCCC
Confidence 9999999999999999 99999999999999866543
No 6
>PRK15101 protease3; Provisional
Probab=99.30 E-value=9e-11 Score=110.53 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=152.1
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~------e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
.|++.+.+.+..++..+.+...+++.++.-|+-.... +.....+..|-+.+...+.+...+.+...++.++..+
T Consensus 63 ~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL 142 (961)
T PRK15101 63 AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAV 142 (961)
T ss_pred CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHH
Confidence 5889999999999988888889999999999865442 2333344566677777777888888899999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC-CCCC--HHHHHhhCCCC----CHHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHL----EAEDLAKF 150 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~~~l~~L~~i----t~ed~~~f 150 (199)
+.+.+.+.+|.++++.+++.|..+..+++....+ |...+...+...+++ ++|. .....+.|+++ +.+++++|
T Consensus 143 ~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f 221 (961)
T PRK15101 143 DRLADAIAEPLLDPKNADRERNAVNAELTMARSR-DGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDF 221 (961)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHH
Confidence 9999999999999999999999999999977655 777777777767763 3443 33456666665 79999999
Q ss_pred HHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhccc
Q 029084 151 VPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQ 189 (199)
Q Consensus 151 ~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~ 189 (199)
+++++.+.++.+.|+| |++.+++..++.+.|++.+..+
T Consensus 222 ~~~~Y~p~nm~lvv~G-~~~~~~l~~~~~~~F~~~~~~~ 259 (961)
T PRK15101 222 YQRYYSANLMKAVIYS-NQPLPELAKLAADTFGRVPNKN 259 (961)
T ss_pred HHHhCcccceEEEEEc-CCCHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999 9999999999999998876544
No 7
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.9e-09 Score=85.78 Aligned_cols=181 Identities=7% Similarity=0.044 Sum_probs=151.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhh-----hhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ-----VAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~-----~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.+.+.+-+.|..++-..+++|.+.+.++.-|.-.....-.-.|. --|...+-+.+...-...++.++.++|..++
T Consensus 52 a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavd 131 (467)
T KOG0960|consen 52 ASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVD 131 (467)
T ss_pred CcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHH
Confidence 36678889999999999999999999999877654433222222 2244455555566778889999999999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC---CCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ---TWPWMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~---~~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
.+.+.+.+-++.++.+++-|.-++|+.+..... -.+..++++...-+.+ ..+.....+.+++|+.+|+++|++.++
T Consensus 132 iLaDIlqns~L~~s~IerER~vILrEmqevd~~-~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY 210 (467)
T KOG0960|consen 132 ILADILQNSKLEESAIERERDVILREMQEVDKN-HQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHY 210 (467)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcc
Confidence 999999999999999999999999999998776 5577888887776655 356778889999999999999999999
Q ss_pred cccceeEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 156 SRTFLECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 156 ~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
.+.++.+...| +++-++..++.+++|++++
T Consensus 211 ~~~RmVlaaaG-gV~He~lv~la~k~fg~~~ 240 (467)
T KOG0960|consen 211 KASRMVLAAAG-GVKHEELVKLAEKYFGDLS 240 (467)
T ss_pred cCccEEEEecC-CcCHHHHHHHHHHHcCCCc
Confidence 99999999999 9999999999999998865
No 8
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.84 E-value=5e-08 Score=72.14 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=109.1
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
..|.+.+.+.+..+...+++.+.+++.++..++.... .+..-.....|.+++...+.+...+.+++.+++++.++
T Consensus 9 ~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l 88 (149)
T PF00675_consen 9 GSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKAL 88 (149)
T ss_dssp TSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHH
T ss_pred CCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHH
Confidence 4699999999999999999999999999999886542 33444555678899999999999999999999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~ 128 (199)
+.+.+.+.+|.++++.|++.|..+..+++....+ |...+...+...++.+
T Consensus 89 ~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~-~~~~~~~~l~~~~f~~ 138 (149)
T PF00675_consen 89 ELLADMLFNPSFDEEEFEREREQILQEIEEIKEN-PQELAFEKLHSAAFRG 138 (149)
T ss_dssp HHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998666 8899999888888763
No 9
>PTZ00432 falcilysin; Provisional
Probab=98.75 E-value=2.1e-07 Score=89.01 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=133.1
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEE--EEeeeCCceEEEEeecCc-cHHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDY--GINHTESGFEVTVVGYNH-KLRIL 76 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~--~i~~~~~gl~l~i~G~s~-kl~~l 76 (199)
|...+.+.+++|... ..+++.++.-++-.... +........|++. +...+.+...+.+...++ .+..+
T Consensus 114 ~~~~f~i~f~T~~~d----~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ 189 (1119)
T PTZ00432 114 KEMCFDFYVPTPPHN----DKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNT 189 (1119)
T ss_pred ceeEEEEEecCCCCC----CcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHH
Confidence 467788888888643 35788888777755432 2222222334433 334445677788888886 59999
Q ss_pred HHHHHHHhhcCCcChhHH--HH---------H--------------------HHHHHHHhhhhccCCcHHHHHHHHHHhc
Q 029084 77 LETIFQKIAQFKVKPDRF--SV---------I--------------------KEMVTKEYHNNKFLQPFQLAMYYCSLIL 125 (199)
Q Consensus 77 l~~i~~~l~~~~~~~~~F--~~---------~--------------------k~~~~~~~~n~~~~~p~~~a~~~~~~ll 125 (199)
+..+++.+.+|.++++.| .+ . |.-+..+++....+ |...+...+...+
T Consensus 190 ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~-p~~~~~~~~~~~l 268 (1119)
T PTZ00432 190 ADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSD-PLSFGYSVIYQNL 268 (1119)
T ss_pred HHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCC-HHHHHHHHHHHHH
Confidence 999999999999987753 32 0 33466777766555 9999999887666
Q ss_pred cCCCCC--HHHHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 126 QDQTWP--WMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 126 ~~~~~~--~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
+.+.|. .-...+.|..+|+||+++|+++++.+.++.++|+| |++.+++.+++.++++..+..
T Consensus 269 f~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~G-did~~~~l~~l~~~f~~~~~~ 332 (1119)
T PTZ00432 269 FSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYG-PNDVTERLEFVDNYLTKHPKT 332 (1119)
T ss_pred hCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEc-CCCHHHHHHHHHHHHhhcccc
Confidence 655554 44678999999999999999999999999999999 999999999999999777655
No 10
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.6e-07 Score=76.46 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=155.9
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~ 79 (199)
|-+.+-+.|.+++....+.-.+.+.++..|.-.+. .++.-.-+..|=.++-+.+.+.+...++.+++.++..++.
T Consensus 44 ~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~l 123 (472)
T KOG2067|consen 44 QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVEL 123 (472)
T ss_pred CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHH
Confidence 45677888999988888888888888888875443 2455555667777888888888999999999999999999
Q ss_pred HHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 029084 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (199)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (199)
+++.+.+|.+++++.+.+|..+.-+++...+. |.-+-.......-+++ . .+.-.-.+.+..|+.+.+.+|.+.++.
T Consensus 124 LadtV~~P~~~d~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~yt 202 (472)
T KOG2067|consen 124 LADTVLNPKFTDQEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYT 202 (472)
T ss_pred HHHHHhcccccHHHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCC
Confidence 99999999999999999999998888888887 8777777777666655 2 233334578899999999999999999
Q ss_pred ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 157 RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
+.++.+-.+| +..+++.+++.+++++++.+.-.|.+++
T Consensus 203 p~rmVlA~vG--V~heelv~~~~~~~~~~~s~~~p~i~~~ 240 (472)
T KOG2067|consen 203 PERMVLAGVG--VEHEELVEIAEKLLGDLPSTKVPPIDES 240 (472)
T ss_pred hhheEeeecC--CCHHHHHHHHHHHhccCCccCCCCcccc
Confidence 9999999999 9999999999999988888755555444
No 11
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=97.71 E-value=0.0032 Score=53.22 Aligned_cols=171 Identities=11% Similarity=0.069 Sum_probs=129.6
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
..|...+.+.|+.++-..+..++++..+...-......+ +....+..|-.++...+.+-+.+++.-..|..+..+
T Consensus 40 ~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l 119 (429)
T KOG2583|consen 40 PTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYL 119 (429)
T ss_pred CCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHH
Confidence 468889999999999888777778777776665544433 445566778888888888999999999999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHH-HHHHHHhhhhccCCcHHHHHHHHHHhccCC-----CCCHHHHHhhCCCCCHHHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIK-EMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWPWMEELEVLPHLEAEDLAKFV 151 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k-~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~~~~~~~l~~L~~it~ed~~~f~ 151 (199)
+.+.+.+.+|.|.+=+.+... .++.. . .....|++++++.+...-+++ .|++. -.+.+++.+|+.+|.
T Consensus 120 ~~L~~V~~~paFkPwEl~D~~~~ti~~--~-l~~~t~~~~a~e~lH~aAfRngLgnslY~p~---~~vg~vss~eL~~Fa 193 (429)
T KOG2583|consen 120 SLLGDVLDAPAFKPWELEDVVLATIDA--D-LAYQTPYTIAIEQLHAAAFRNGLGNSLYSPG---YQVGSVSSSELKDFA 193 (429)
T ss_pred HHHHHhhcccCcCchhhhhhhhhhhHH--H-hhhcChHHHHHHHHHHHHHhcccCCcccCCc---ccccCccHHHHHHHH
Confidence 999999999888765554443 22222 2 234459999999887766654 24333 246889999999999
Q ss_pred HHHhcccceeEEEeeCCCCHHHHHHHHHHH
Q 029084 152 PMMLSRTFLECYIETLNLMKQDRLSSTLKM 181 (199)
Q Consensus 152 ~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~ 181 (199)
++.|-..++.+ +|.|++-.+.....+++
T Consensus 194 ~k~fv~gn~~l--vg~nvd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 194 AKHFVKGNAVL--VGVNVDHDDLKQFADEY 221 (429)
T ss_pred HHHhhccceEE--EecCCChHHHHHHHHHh
Confidence 99997766654 45569999999999888
No 12
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.015 Score=54.35 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=130.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh------hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL------NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l------~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
.||+.-.+.++.++..+.....+++-...-|+--.- ++..+.-+.-|-+.+-....+.-.+-+.--++.+...+
T Consensus 43 a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~~al~~AL 122 (937)
T COG1025 43 ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGAL 122 (937)
T ss_pred CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecHHHHHHHH
Confidence 466777778888777655556888887766664111 12222333344444444444555556666688999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC--CCCC-----HHHHHhhCCC-CCHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD--QTWP-----WMEELEVLPH-LEAEDLAK 149 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~--~~~~-----~~~~l~~L~~-it~ed~~~ 149 (199)
+++++.+.+|-++++.-++-+..+-.++.....++-.. +..+..++.+ ++++ .-+++....+ ...++++.
T Consensus 123 DrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R--~~~~~~~~~np~HP~srFs~GN~~TL~~~p~~~v~~el~e 200 (937)
T COG1025 123 DRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWR--MYQVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKE 200 (937)
T ss_pred HHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHH--HHHHHHhhcCCCCCccccCCCChhhhccCCCchHHHHHHH
Confidence 99999999999999999999999999999988774433 3333444443 3333 2233444333 55789999
Q ss_pred HHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccc
Q 029084 150 FVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQY 190 (199)
Q Consensus 150 f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~ 190 (199)
|++.+++...+.+.|+| |=+..++.++..+.+++.+.-.-
T Consensus 201 f~~~~YSa~~M~lviyg-~q~ldeL~~~a~~~F~~Ipn~~~ 240 (937)
T COG1025 201 FHEKHYSANNMKLVIYG-NQPLDELAKLAADLFGDIPNRAR 240 (937)
T ss_pred HHHHhcChhheEEEEec-CCCHHHHHHHHHHHhCcCCCCCC
Confidence 99999999999999999 99999999999999988775443
No 13
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.03 E-value=0.011 Score=51.19 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=80.5
Q ss_pred ccHHHHHHHHHHHhhcCC---cChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHH
Q 029084 71 HKLRILLETIFQKIAQFK---VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAED 146 (199)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~~it~ed 146 (199)
++....+..+++.+..-. ++++.++..|..+...+-..... |...+..+...... ...-+..+..+.++.+|.+|
T Consensus 331 ~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~d 409 (438)
T COG0612 331 EKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS-PSSIAELLGQYLLLGGSLITLEELLERIEAVTLED 409 (438)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCC-HHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHH
Confidence 556667777776666654 88999999998888887776655 88888888888887 45678999999999999999
Q ss_pred HHHHHHHHhcccceeEEEeeCCCC
Q 029084 147 LAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 147 ~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
+.++.++++.+....+.++| +..
T Consensus 410 v~~~a~~~~~~~~~~~~~~~-p~~ 432 (438)
T COG0612 410 VNAVAKKLLAPENLTIVVLG-PEK 432 (438)
T ss_pred HHHHHHHhcCCCCcEEEEEc-ccc
Confidence 99999999999888888888 644
No 14
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0076 Score=51.10 Aligned_cols=151 Identities=12% Similarity=0.142 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHHHhhcC--CcChhHHHHH
Q 029084 21 SPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVI 97 (199)
Q Consensus 21 ~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~ 97 (199)
.|.+=++.+||..+++++- ..|. ...|+-+.++.| +.|..+...+..+..++.+.+.+.+. .+++++.+++
T Consensus 301 GPGKGMySrLY~~vLNry~--wv~s----ctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RA 374 (472)
T KOG2067|consen 301 GPGKGMYSRLYLNVLNRYH--WVYS----CTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERA 374 (472)
T ss_pred CCCcchHHHHHHHHHhhhH--HHHH----hhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4455667777777777642 2222 223344445666 66788888899999999999999886 4789999999
Q ss_pred HHHHHHHhh-hhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHH
Q 029084 98 KEMVTKEYH-NNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRL 175 (199)
Q Consensus 98 k~~~~~~~~-n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~ 175 (199)
|.++...+- |.... |.. +-++-++++- ...-+++|.++.++++|.+|+..+-+.++.+. ..+.-.| |++.--..
T Consensus 375 K~qlkS~LlMNLESR-~V~-~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~-p~va~~G-d~~~lpt~ 450 (472)
T KOG2067|consen 375 KTQLKSMLLMNLESR-PVA-FEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGK-PSVAAFG-DGTGLPTY 450 (472)
T ss_pred HHHHHHHHHhccccc-chh-HHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcCC-ceeccCC-cccCCcch
Confidence 999888844 44343 644 3444455554 55678999999999999999999999999553 3445578 87765555
Q ss_pred HHHHHH
Q 029084 176 SSTLKM 181 (199)
Q Consensus 176 ~~~~~~ 181 (199)
....+.
T Consensus 451 ~~i~~~ 456 (472)
T KOG2067|consen 451 DHIGNA 456 (472)
T ss_pred hhhhhh
Confidence 544444
No 15
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.03 Score=52.92 Aligned_cols=179 Identities=11% Similarity=0.009 Sum_probs=120.1
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh----hhhhchhhhh--ccEEEEeeeCCceEEEEeecCccHHHHHHHH
Q 029084 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL----NEYAYYAQVA--GLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 7 ~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l----~e~~y~a~~a--g~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i 80 (199)
.+..+.++.++..+...-++++-+.--|+--+. .|-.|...++ |-+.+.......-...+.-=.++++.++..+
T Consensus 50 ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrF 129 (974)
T KOG0959|consen 50 SSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRF 129 (974)
T ss_pred cceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccccccccceEEEecchHHHHHHHHHH
Confidence 445566666777666666888887777664222 3333333332 2222322222333334444677899999999
Q ss_pred HHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC-CCCC--HHHHHhhCCCCC-----HHHHHHHHH
Q 029084 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWP--WMEELEVLPHLE-----AEDLAKFVP 152 (199)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~--~~~~l~~L~~it-----~ed~~~f~~ 152 (199)
++.+..|.++++.-++-+..+..++++....+-... ..+...+..+ ++++ ...-.++|.+.. .+++.+|++
T Consensus 130 aqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~-~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~k 208 (974)
T KOG0959|consen 130 AQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRF-DQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFYK 208 (974)
T ss_pred HHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHH-HHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHHH
Confidence 999999999999999999999999999887644332 2233333333 2332 112334444444 889999999
Q ss_pred HHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 153 MMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 153 ~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
++++...+.+.|+| .-+.....+++...|++...
T Consensus 209 ~~Yssn~M~l~i~G-~eslD~Le~lv~~~F~~i~N 242 (974)
T KOG0959|consen 209 NWYSSNIMTLVIVG-KESLDVLESLVTRLFDEISN 242 (974)
T ss_pred hhcccccceEEEEc-CCChhHHHHHHHHHcccccc
Confidence 99999999999999 99999888887777754443
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=96.63 E-value=0.0094 Score=55.81 Aligned_cols=166 Identities=15% Similarity=0.100 Sum_probs=110.4
Q ss_pred ceeEEEEEEeCCCCCC-C----HHHHHHH--------HHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCc
Q 029084 5 PKAFVKIYFNCPHASS-S----PESEVLT--------DIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNH 71 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~-~----~~~~~l~--------~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~ 71 (199)
|...++|.|.++...+ . -++.+++ +.|..+++.+|+...-...-.+ +.+++-. +-=.+
T Consensus 41 ~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D--~T~YP~s-------S~~~~ 111 (978)
T COG1026 41 PNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPD--KTVYPAS-------SANEK 111 (978)
T ss_pred cCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCC--cceeecc-------ccCcc
Confidence 6667788888855332 2 2334433 3566666666665333222222 2222110 11124
Q ss_pred cHHHHHHHHHHHhhcCCcChhHHHHHHHH--------------HHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHH
Q 029084 72 KLRILLETIFQKIAQFKVKPDRFSVIKEM--------------VTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WME 134 (199)
Q Consensus 72 kl~~ll~~i~~~l~~~~~~~~~F~~~k~~--------------~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~ 134 (199)
.+..++..-++.+.+|-.+++.|.+--=+ +..+.+....+ |..+....+...+++. .|. ...
T Consensus 112 Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss-~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 112 DFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSS-GESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred hHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccC-chhHHHHHHHHhhCCCccccccCCC
Confidence 56678888899999998888877653211 12234444444 8888888888888865 333 445
Q ss_pred HHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHH
Q 029084 135 ELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKM 181 (199)
Q Consensus 135 ~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~ 181 (199)
....+.++|+|++.+||+++..+.+..++++| |++.++..+.+...
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yG-ni~~~~~L~~iee~ 236 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYG-NIPTERLLDFIEEK 236 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEEC-CCCHHHHHHHHHHh
Confidence 78899999999999999999999999999999 99999999877666
No 17
>PTZ00432 falcilysin; Provisional
Probab=95.74 E-value=0.38 Score=46.90 Aligned_cols=176 Identities=10% Similarity=0.066 Sum_probs=108.0
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhc-------hhhhhccEEEEeeeC--------------CceEEE
Q 029084 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAY-------YAQVAGLDYGINHTE--------------SGFEVT 65 (199)
Q Consensus 8 ~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~-~l~e~~y-------~a~~ag~~~~i~~~~--------------~gl~l~ 65 (199)
++.+.|..+.. +....-+..||+.++.. ......| ....-|++++..... ..+.++
T Consensus 683 y~~~~fdl~~l--~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 760 (1119)
T PTZ00432 683 YLDFAFSLDSL--TVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVR 760 (1119)
T ss_pred EEEEEecCCCC--CHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEE
Confidence 33444444333 44556678888888864 1111222 233456665544322 258899
Q ss_pred EeecCccHHHHHHHHHHHhhcCCcCh-hHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-----CCC---HHHHH
Q 029084 66 VVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-----TWP---WMEEL 136 (199)
Q Consensus 66 i~G~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-----~~~---~~~~l 136 (199)
+....+|++.+++.+.+.+.+..|+. ++...+.++...++.+......+..|......-+... .+. .-..+
T Consensus 761 ~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~~~~e~~~G~~~~~fl 840 (1119)
T PTZ00432 761 AKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSDYADELVNGYSQLLFL 840 (1119)
T ss_pred EEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999975 5588888888888888777557777776554333211 111 11222
Q ss_pred hhC----CCCCH----HHHHHHHHHHhcccceeEEEeeCCCCHH-HHHHHHHHHHHhhh
Q 029084 137 EVL----PHLEA----EDLAKFVPMMLSRTFLECYIETLNLMKQ-DRLSSTLKMFSLRA 186 (199)
Q Consensus 137 ~~L----~~it~----ed~~~f~~~~~~~~~~~~li~G~Ni~~~-~a~~~~~~~~~~~~ 186 (199)
..| .+-.. +.+....+.+++...+.+.|.| +.+.- ...+.+...+..++
T Consensus 841 ~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~-~~~~~~~~~~~~~~~~~~l~ 898 (1119)
T PTZ00432 841 KETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTG-DSELLDSLLDDSTTFLKKLS 898 (1119)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEe-CHHHHHHHHHHHHHHHHhcc
Confidence 211 11122 3355677778888899999999 76443 33344445565553
No 18
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.044 Score=49.71 Aligned_cols=129 Identities=9% Similarity=0.000 Sum_probs=87.3
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcCCcChhHHHHHHHH----------HHHHhhhhccCCcHHHHHHHHHHhccCC---
Q 029084 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEM----------VTKEYHNNKFLQPFQLAMYYCSLILQDQ--- 128 (199)
Q Consensus 62 l~l~i~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~----------~~~~~~n~~~~~p~~~a~~~~~~ll~~~--- 128 (199)
.+++.-|. |.+-.++-..++.|.+|-++.+.|..-.-. +..+.++.... -..+.....+.++++.
T Consensus 101 YtLStag~-dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~-~~~im~~~~~~~~yP~~sg 178 (1022)
T KOG0961|consen 101 YTLSTAGS-DGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESE-MESIMDRKTKEVIYPPFSG 178 (1022)
T ss_pred EEeecccc-cchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcc-cchhhhhhhheeecCCCCC
Confidence 44444332 344555566667777888888877664321 23334444333 2233344455666643
Q ss_pred C-CCHHHHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCC
Q 029084 129 T-WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANH 193 (199)
Q Consensus 129 ~-~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~ 193 (199)
| +....+...|..+|.|.+++||+.++...++-+.|-| +++..+..+++.....+++.-....|
T Consensus 179 Y~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG-~v~~d~lL~~m~~~~neile~~s~vP 243 (1022)
T KOG0961|consen 179 YAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCG-MVDHDQLLEIMNNVENEILEHMSTVP 243 (1022)
T ss_pred ceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEec-CcCHHHHHHHHHHHHhhhhhccccCC
Confidence 2 2344688899999999999999999999999999999 99999999999888777766544433
No 19
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=95.44 E-value=0.14 Score=37.77 Aligned_cols=95 Identities=13% Similarity=0.226 Sum_probs=51.4
Q ss_pred eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhh--hh--ccEEEEeee--C--CceEEEEeecCccHHHHH
Q 029084 6 KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VA--GLDYGINHT--E--SGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 6 k~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~--~a--g~~~~i~~~--~--~gl~l~i~G~s~kl~~ll 77 (199)
...+.+.+..+.. .+........++..++...+...++... .. ++++..+.. . .-+.+.+.+-.++...++
T Consensus 79 ~~~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (184)
T PF05193_consen 79 QSIVSIAFPGPPI-KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAI 157 (184)
T ss_dssp SEEEEEEEEEEET-GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHH
T ss_pred ccccccccccccc-cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHH
Confidence 4444444444333 1233445555666666655222222222 12 222222221 1 236777777777877777
Q ss_pred HHHHHHhhcC---CcChhHHHHHHHHH
Q 029084 78 ETIFQKIAQF---KVKPDRFSVIKEMV 101 (199)
Q Consensus 78 ~~i~~~l~~~---~~~~~~F~~~k~~~ 101 (199)
+.+.+.+... .+++++|+++|+++
T Consensus 158 ~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 158 EAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777666554 58999999999875
No 20
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=95.29 E-value=2.8 Score=39.95 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=103.8
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh----------hhhhchhhhhccEEEEeeeC---------CceEEEEe
Q 029084 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL----------NEYAYYAQVAGLDYGINHTE---------SGFEVTVV 67 (199)
Q Consensus 7 ~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l----------~e~~y~a~~ag~~~~i~~~~---------~gl~l~i~ 67 (199)
+++.+.+..+... ..-.-+..||+.++...- +++. ...-|++.+.+... ..+.+++.
T Consensus 549 ~yl~~~~~~~~l~--~~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~--~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K 624 (978)
T COG1026 549 TYLRLYFDLDMLP--SELLPYLPLFAFALTNLGTETYSYKELLNQIE--RHTGGISVSLSVDTDPGDDGEYRPSFSISGK 624 (978)
T ss_pred EEEEEEeecCCCC--hhhhhhHHHHHHHHHhcCCCCcCHHHHHHHHH--HHhCCceeeEeeccCCCccccccceEEEEEE
Confidence 3444555554442 223346666666665422 2222 12245555554432 24888888
Q ss_pred ecCccHHHHHHHHHHHhhcCCc-ChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC--------CCCHHHHHhh
Q 029084 68 GYNHKLRILLETIFQKIAQFKV-KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ--------TWPWMEELEV 138 (199)
Q Consensus 68 G~s~kl~~ll~~i~~~l~~~~~-~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~--------~~~~~~~l~~ 138 (199)
..++|...+++.|-+.|.+..+ +.++...+.+++..++.+...+.+...|......-+... ..+....+..
T Consensus 625 ~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~ 704 (978)
T COG1026 625 ALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRE 704 (978)
T ss_pred ehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHH
Confidence 8999999999999999999999 889999999999999999888778887777665544432 1122223333
Q ss_pred CCC---CCH-----HHHHHHHHHHhcccceeEEEeeCCCCHH
Q 029084 139 LPH---LEA-----EDLAKFVPMMLSRTFLECYIETLNLMKQ 172 (199)
Q Consensus 139 L~~---it~-----ed~~~f~~~~~~~~~~~~li~G~Ni~~~ 172 (199)
|.+ -++ +.+++.++.++...++.+++.| +++..
T Consensus 705 l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~-~~~~~ 745 (978)
T COG1026 705 LSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIG-DIDKI 745 (978)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEec-Chhhh
Confidence 321 222 3466777788888888899999 76643
No 21
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.77 Score=39.31 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-------------hhhhhhchhhhh--ccEEEEeeeCCce-EEEE
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-------------YLNEYAYYAQVA--GLDYGINHTESGF-EVTV 66 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~-------------~l~e~~y~a~~a--g~~~~i~~~~~gl-~l~i 66 (199)
.+|++.+.|.+-..+-. +| ......+...++.. .|.+..-+-.+| -.+|+++..+.|+ .+.+
T Consensus 267 ~lP~a~~AiAVEG~~w~-~p-D~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG~y~ 344 (467)
T KOG0960|consen 267 DLPLAHIAIAVEGVSWA-HP-DYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWGIYF 344 (467)
T ss_pred CCchhheeeeEecCCcC-Cc-cHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhcccccccceeEEE
Confidence 36888888888875532 22 22333334444432 122221111222 2366666666663 3444
Q ss_pred ee-cCccHHHHHHHHHHHhhcC--CcChhHHHHHHHHHHHHhhhhc-cCCcHHHHHHHHHHhccC-CCCCHHHHHhhCCC
Q 029084 67 VG-YNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQD-QTWPWMEELEVLPH 141 (199)
Q Consensus 67 ~G-~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~ll~~-~~~~~~~~l~~L~~ 141 (199)
-. =...++.++..++..-... .+++.+-+++|.++..++--.. ...|. |-+.-+++|.. ...++.|+.+-+++
T Consensus 345 V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi--~ediGrqlL~~Grri~l~El~~rId~ 422 (467)
T KOG0960|consen 345 VTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPI--AEDIGRQLLTYGRRIPLAELEARIDA 422 (467)
T ss_pred EecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCch--HHHHHHHHhhcCCcCChHHHHHHHhh
Confidence 43 3455666666666655443 5899999999999999966554 33454 77887777775 46899999999999
Q ss_pred CCHHHHHHHHHHHhcccceeEEEeeCCCC
Q 029084 142 LEAEDLAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 142 it~ed~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
+|.++++.++.+++-.-.+-+..+| .+.
T Consensus 423 vt~~~Vr~va~k~iyd~~iAia~vG-~ie 450 (467)
T KOG0960|consen 423 VTAKDVREVASKYIYDKDIAIAAVG-PIE 450 (467)
T ss_pred ccHHHHHHHHHHHhhcCCcceeeec-ccc
Confidence 9999999999999877778888889 764
No 22
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=0.84 Score=41.88 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHhccC-CCCCHH--HHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHH
Q 029084 113 PFQLAMYYCSLILQD-QTWPWM--EELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMF 182 (199)
Q Consensus 113 p~~~a~~~~~~ll~~-~~~~~~--~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~ 182 (199)
|...-...+.+.|++ +.|+.. .-...+.++++|++++|+++++.+.+...+.+| |.--++-...+...+
T Consensus 202 ~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYG-n~Pl~~~l~~l~e~~ 273 (998)
T KOG2019|consen 202 PDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYG-NFPLEDLLKQLEEDF 273 (998)
T ss_pred hhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeec-CchHHHHHHHHHHhh
Confidence 555555555566654 456544 346678999999999999999999999999999 999998887776443
No 23
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=1.8 Score=39.73 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=80.4
Q ss_pred ccEEEEeeeCCc-----eEEEEeecCccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHh
Q 029084 50 GLDYGINHTESG-----FEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI 124 (199)
Q Consensus 50 g~~~~i~~~~~g-----l~l~i~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l 124 (199)
.++.+|+.+-.| +.++|..=.++.+..++.|--.+....|++++-....++++.++.....+ --..+..+....
T Consensus 619 ~id~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRd-g~~vlss~~~~~ 697 (1022)
T KOG0961|consen 619 LIDHSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRD-GCTVLSSAVASM 697 (1022)
T ss_pred hhhhhhcccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcC-ccEehHHHHHHH
Confidence 344455544444 77888888888999999999999999999999999999999998887666 444455555555
Q ss_pred ccCC---CCCHHH-----HHhhC----CC---CCHHHHHHHHHHHhcccceeEEEeeCCCCHHH
Q 029084 125 LQDQ---TWPWME-----ELEVL----PH---LEAEDLAKFVPMMLSRTFLECYIETLNLMKQD 173 (199)
Q Consensus 125 l~~~---~~~~~~-----~l~~L----~~---it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~ 173 (199)
++.. .++.++ +++.+ ++ --++.+.+...-.+....+.+.|+| ||++-+
T Consensus 698 lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvg-DI~kid 760 (1022)
T KOG0961|consen 698 LYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVG-DIDKID 760 (1022)
T ss_pred HhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEe-ehhcCC
Confidence 5543 133222 22222 11 1133344444334455678899999 998763
No 24
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=89.05 E-value=2.8 Score=33.55 Aligned_cols=108 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH---------hhhhhhchhhhhccEEEEeeeC---------CceEEEEee
Q 029084 7 AFVKIYFNCPHASSSPESEVLTDIFTRLLLD---------YLNEYAYYAQVAGLDYGINHTE---------SGFEVTVVG 68 (199)
Q Consensus 7 ~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~---------~l~e~~y~a~~ag~~~~i~~~~---------~gl~l~i~G 68 (199)
+++++.|..+... +...-+..|++.++.. .++... .....|+++++.... .++.++..+
T Consensus 92 ~Y~~l~fdl~~l~--~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i-~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~ 168 (248)
T PF08367_consen 92 VYVRLYFDLSDLP--EEDLPYLPLLTDLLGELGTKNYSYEELSNEI-DLYTGGISFSIEVYTDYDDDDKYRPYLVISAKC 168 (248)
T ss_dssp EEEEEEEE-TTS---CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHH-HHHSSEEEEEEEEEEEECTECCCEEEEEEEEEE
T ss_pred EEEEEEecCCCCC--HHHHHhHHHHHHHHHhCCCCCCCHHHHHHHH-HHhCCCeEEEeeeccCCCCccceeEEEEEEEEe
Confidence 5566666665443 2334566677776643 122211 233456777664432 258899999
Q ss_pred cCccHHHHHHHHHHHhhcCCcCh-hHHHHHHHHHHHHhhhhccCCcHHHH
Q 029084 69 YNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLA 117 (199)
Q Consensus 69 ~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a 117 (199)
..+|++.+++.+.+.+.+..|+. ++...+..+....+++......+..|
T Consensus 169 L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A 218 (248)
T PF08367_consen 169 LDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYA 218 (248)
T ss_dssp EGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999975 57777777777777776554344433
No 25
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=78.28 E-value=60 Score=30.44 Aligned_cols=145 Identities=18% Similarity=0.267 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhh-hcc--EEEEeeeCC------ceEEEEeecC----ccHHHHHHHHHHHhhcCCcC
Q 029084 24 SEVLTDIFTRLLLDYLNEYAYYAQV-AGL--DYGINHTES------GFEVTVVGYN----HKLRILLETIFQKIAQFKVK 90 (199)
Q Consensus 24 ~~~l~~l~~~ll~~~l~e~~y~a~~-ag~--~~~i~~~~~------gl~l~i~G~s----~kl~~ll~~i~~~l~~~~~~ 90 (199)
-+-...++..++-+.-+.-.|.|.. .|+ +++.+.+.+ -+.+-+.|-+ +++.+++..+++.+.+-.++
T Consensus 329 etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd 408 (998)
T KOG2019|consen 329 ETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFD 408 (998)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445566666666666777777655 344 444444432 3778889999 46888888999999988999
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CC---CHHHHHhhCCC----CCHHHHHHHHHHHh-ccc-ce
Q 029084 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW---PWMEELEVLPH----LEAEDLAKFVPMML-SRT-FL 160 (199)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~---~~~~~l~~L~~----it~ed~~~f~~~~~-~~~-~~ 160 (199)
.++.+.+..++.-+++......-..++........+.. ++ ..++.++.++. -+-.=|+..+++++ ++- .+
T Consensus 409 ~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~ 488 (998)
T KOG2019|consen 409 NDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCF 488 (998)
T ss_pred hHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceE
Confidence 99999999999999888877655666666666666643 23 24455555432 23344777788877 333 67
Q ss_pred eEEEeeCCC
Q 029084 161 ECYIETLNL 169 (199)
Q Consensus 161 ~~li~G~Ni 169 (199)
..-+.+ +=
T Consensus 489 t~smqp-d~ 496 (998)
T KOG2019|consen 489 TFSMQP-DP 496 (998)
T ss_pred EEEecC-Cc
Confidence 777788 53
No 26
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=75.48 E-value=1 Score=34.10 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHh-cccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 140 PHLEAEDLAKFVPMML-SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 140 ~~it~ed~~~f~~~~~-~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
...+.+++++.++... .+.++.+.+.| +|+.+.+.++...-. +.+...+..+.++|
T Consensus 107 D~~~~~~~~~~v~~l~~~~~~v~ie~SG-GI~~~ni~~ya~~gv-D~isvg~~~~~a~~ 163 (169)
T PF01729_consen 107 DNMSPEDLKEAVEELRELNPRVKIEASG-GITLENIAEYAKTGV-DVISVGSLTHSAPP 163 (169)
T ss_dssp ES-CHHHHHHHHHHHHHHTTTSEEEEES-SSSTTTHHHHHHTT--SEEEECHHHHSBE-
T ss_pred cCcCHHHHHHHHHHHhhcCCcEEEEEEC-CCCHHHHHHHHhcCC-CEEEcChhhcCCcc
Confidence 3678899999999766 44469999999 999999999886654 55555554454443
No 27
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.06 E-value=12 Score=30.70 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhc---ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 139 LPHLEAEDLAKFVPMMLS---RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 139 L~~it~ed~~~f~~~~~~---~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
|.+.+.+++++.++..-. +.++.+.+.| ||+.+.+.++...-. +.+.+++.-|.++|
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSG-GI~~~ni~~yA~tGv-D~Is~galt~sa~~ 267 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSG-GITPENIEEYAKLDV-DVISLGALTHSVRN 267 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEEC-CCCHHHHHHHHHcCC-CEEEeChhhcCCCc
Confidence 346888999988876543 2478999999 999999999887654 66666665554544
No 28
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.57 E-value=13 Score=30.77 Aligned_cols=64 Identities=6% Similarity=-0.062 Sum_probs=47.2
Q ss_pred CCHHHHHhhC---------CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 130 WPWMEELEVL---------PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 130 ~~~~~~l~~L---------~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
-+.+|..+++ ++.+.|++++.++..- .++.+-+.| ||+.+.+.++...-. +.+.+++.-|.++|
T Consensus 205 ~tleea~~a~~agaDiImLDnmspe~l~~av~~~~--~~~~leaSG-GI~~~ni~~yA~tGV-D~Is~galthsa~~ 277 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIA--GRSRIECSG-NIDMTTISRFRGLAI-DYVSSGSLTHSAKS 277 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc--CceEEEEEC-CCCHHHHHHHHhcCC-CEEEeCccccCCcc
Confidence 3455555554 3688999999987443 367899999 999999999987766 77777776665554
No 29
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=57.94 E-value=21 Score=29.32 Aligned_cols=65 Identities=11% Similarity=-0.049 Sum_probs=49.4
Q ss_pred CCHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 130 WPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 130 ~~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
=+.+|..++++ +.+.|++++.++..-.+.++..-++| ||+.+.+.+....-. +.+..+|.-|-+|
T Consensus 196 esle~~~eAl~agaDiImLDNm~~e~~~~av~~l~~~~~~~lEaSG-gIt~~ni~~yA~tGV-D~IS~galths~~ 269 (280)
T COG0157 196 ESLEEAEEALEAGADIIMLDNMSPEELKEAVKLLGLAGRALLEASG-GITLENIREYAETGV-DVISVGALTHSAP 269 (280)
T ss_pred CCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHhccCCceEEEEeC-CCCHHHHHHHhhcCC-CEEEeCccccCCc
Confidence 45666666654 68899999999876556688888999 999999999887755 6666666655554
No 30
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=57.72 E-value=19 Score=23.72 Aligned_cols=38 Identities=5% Similarity=0.153 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhh
Q 029084 140 PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLR 185 (199)
Q Consensus 140 ~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~ 185 (199)
+++|+|+++++...++.. .| .+++++|+.++..++..|
T Consensus 40 ~~~t~eemie~~~~~~~~-------~~-~~~~~~a~~~~~~~lp~L 77 (81)
T PF12674_consen 40 QDITMEEMIEFCVPFMDE-------FN-GMTPEEARKMMPRYLPTL 77 (81)
T ss_pred ecCCHHHHHHHHHHHHHH-------hC-CCCHHHHHHHHHHHccCC
Confidence 479999999999998876 45 599999999998887444
No 31
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.26 E-value=21 Score=29.53 Aligned_cols=65 Identities=9% Similarity=-0.149 Sum_probs=46.2
Q ss_pred CHHHHHhhC---------CCCCHHHHHHHHHHHh-cccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 131 PWMEELEVL---------PHLEAEDLAKFVPMML-SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 131 ~~~~~l~~L---------~~it~ed~~~f~~~~~-~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.+|..+++ .+.+.+++++.++..- .+.++.+.+.| ||+.+.+.++...-. +.+..++.-|.++|
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~~~~~~v~ieaSG-GI~~~ni~~yA~tGv-D~Is~galt~sa~~ 282 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRDARAPTVLLESSG-GLTLDTAAAYAETGV-DYLAVGALTHSVPV 282 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhccCCCEEEEEEC-CCCHHHHHHHHhcCC-CEEEeChhhcCCCc
Confidence 455555555 3688999999988532 24578899999 999999999887654 66666665554443
No 32
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.81 E-value=21 Score=29.59 Aligned_cols=63 Identities=5% Similarity=-0.157 Sum_probs=47.0
Q ss_pred CCHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 130 WPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 130 ~~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
-+.+|..++++ +.+.|++++.++.. +.++.+-+.| ||+.+.+.++...-. +.+.+++.-|.++
T Consensus 213 etleea~eA~~aGaDiImLDnmspe~l~~av~~~--~~~~~lEaSG-GIt~~ni~~yA~tGV-D~IS~galthsa~ 284 (294)
T PRK06978 213 ETLAQLETALAHGAQSVLLDNFTLDMMREAVRVT--AGRAVLEVSG-GVNFDTVRAFAETGV-DRISIGALTKDVR 284 (294)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhh--cCCeEEEEEC-CCCHHHHHHHHhcCC-CEEEeCccccCCc
Confidence 45666666554 68899999988754 3368899999 999999999987765 6666666665554
No 33
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.75 E-value=25 Score=28.93 Aligned_cols=62 Identities=11% Similarity=-0.090 Sum_probs=44.8
Q ss_pred CHHHHHhhC---------CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 131 PWMEELEVL---------PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 131 ~~~~~l~~L---------~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
+.+|..+++ ++.+.+++++.++..- .+..+-+.| ||+.+.+.++...-. +.+..++.-|.++
T Consensus 202 slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~--~~~~leaSG-gI~~~ni~~yA~tGV-D~Is~galths~~ 272 (281)
T PRK06543 202 RLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVD--GRAIVEASG-NVNLNTVGAIASTGV-DVISVGALTHSVR 272 (281)
T ss_pred CHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhC--CCeEEEEEC-CCCHHHHHHHHhcCC-CEEEeCccccCCc
Confidence 455655544 4788999999988543 345788999 999999999987765 6666666555444
No 34
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=51.29 E-value=28 Score=28.93 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=45.0
Q ss_pred CHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 131 PWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 131 ~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
+.+|..++++ +.+.+++++.++.. +.++.+-+.| ||+.+.+.++...-. +.+..++.-|-++
T Consensus 217 sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~--~~~~~ieaSG-GI~~~ni~~yA~tGV-D~Is~galthsa~ 287 (296)
T PRK09016 217 NLDELDQALKAGADIIMLDNFTTEQMREAVKRT--NGRALLEVSG-NVTLETLREFAETGV-DFISVGALTKHVQ 287 (296)
T ss_pred CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh--cCCeEEEEEC-CCCHHHHHHHHhcCC-CEEEeCccccCCC
Confidence 4566655554 68889999999843 3478899999 999999999887654 5566665555444
No 35
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=51.00 E-value=37 Score=21.60 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhccC--CCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 113 PFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 113 p~~~a~~~~~~ll~~--~~~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
+...+...+...... +..+...+.++|..+...|+.+.+++.+
T Consensus 39 ~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~~ 83 (83)
T PF00531_consen 39 LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQML 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhhC
Confidence 445555555544443 5788999999999999999998887653
No 36
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.70 E-value=27 Score=28.78 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=45.3
Q ss_pred CHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 131 PWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 131 ~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.+|..++++ +.+.+++++.++..- .+....+.| ||+.+.+.++...-. +.+..++.-|.++|
T Consensus 203 tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~~--~~~~leaSG-GI~~~ni~~yA~tGV-D~Is~Galthsa~~ 274 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNMTPDTLREAVAIVA--GRAITEASG-RITPETAPAIAASGV-DLISVGWLTHSAPV 274 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHhC--CCceEEEEC-CCCHHHHHHHHhcCC-CEEEeChhhcCCCc
Confidence 5556555543 688899999988443 334589999 999999999987755 66666666665544
No 37
>COG3411 Ferredoxin [Energy production and conversion]
Probab=48.68 E-value=31 Score=21.64 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.2
Q ss_pred ceeEEEeeCCCCHHHHHHHHHHHHH
Q 029084 159 FLECYIETLNLMKQDRLSSTLKMFS 183 (199)
Q Consensus 159 ~~~~li~G~Ni~~~~a~~~~~~~~~ 183 (199)
+-+..-++ ++|+++|..+++.++.
T Consensus 23 YpegvWY~-~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 23 YPEGVWYT-RVDPEDARRIVQSHLL 46 (64)
T ss_pred ecCCeeEe-ccCHHHHHHHHHHHHh
Confidence 44567889 9999999999999874
No 38
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.33 E-value=31 Score=28.26 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhc-ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCC
Q 029084 139 LPHLEAEDLAKFVPMMLS-RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANH 193 (199)
Q Consensus 139 L~~it~ed~~~f~~~~~~-~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~ 193 (199)
|++.+++++++.++..-. ..++.+.+.| ||+.+++.++...-. +.+..++.-|
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsG-gIt~~ni~~ya~~Gv-D~IsvG~l~~ 261 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASG-NITLENINAYAKSGV-DAISSGSLIH 261 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEEC-CCCHHHHHHHHHcCC-CEEEeChhhc
Confidence 357889999999885322 2467899999 999999999886644 4445554444
No 39
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.72 E-value=37 Score=28.04 Aligned_cols=66 Identities=9% Similarity=-0.043 Sum_probs=45.4
Q ss_pred CCCHHHHHhhC---------CCCCHHHHHHHHHHHhc-ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 129 TWPWMEELEVL---------PHLEAEDLAKFVPMMLS-RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 129 ~~~~~~~l~~L---------~~it~ed~~~f~~~~~~-~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
.-+.+|..+++ ...+++++++.++..-. ..++.+.+.| +|+.+.+.++...-. +.+...+.-|.++
T Consensus 203 v~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsG-GIt~~ni~~ya~tGv-D~Isvgsl~~sa~ 278 (288)
T PRK07428 203 TETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASG-NITLETIRAVAETGV-DYISSSAPITRSP 278 (288)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCC-CEEEEchhhhCCC
Confidence 35566666655 36888999988875432 4578899999 999999999886644 4455554444333
No 40
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=43.13 E-value=45 Score=27.36 Aligned_cols=60 Identities=8% Similarity=-0.083 Sum_probs=43.2
Q ss_pred CCHHHHHhhCC---------CCCHHHHHHHHHHHh-cccceeEEEeeCCCCHHHHHHHHHHHHHhhhccccc
Q 029084 130 WPWMEELEVLP---------HLEAEDLAKFVPMML-SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYA 191 (199)
Q Consensus 130 ~~~~~~l~~L~---------~it~ed~~~f~~~~~-~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~ 191 (199)
-+.+|..++++ +.+.+++++.++..- .+.++.+-+.| +|+.+.+.++...-. +.+.+++.
T Consensus 196 ~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasG-GI~~~ni~~ya~~Gv-D~is~gal 265 (277)
T TIGR01334 196 DTIEQALTVLQASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAG-GINPENIADYIEAGI-DLFITSAP 265 (277)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEEC-CCCHHHHHHHHhcCC-CEEEeCcc
Confidence 35566555443 688999999888654 24578899999 999999999887654 44444443
No 41
>PRK14420 acylphosphatase; Provisional
Probab=41.68 E-value=62 Score=21.53 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=30.3
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~~ 83 (199)
.|...|+.=-+....+| +.+.+.|-.+++..|++.+.+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~ 63 (91)
T PRK14420 24 EADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEKG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 46666776666666778 9999999988888888877764
No 42
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.44 E-value=46 Score=27.32 Aligned_cols=63 Identities=8% Similarity=-0.112 Sum_probs=43.9
Q ss_pred CCHHHHHhhC---------CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 130 WPWMEELEVL---------PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 130 ~~~~~~l~~L---------~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
.+.+|..+++ ...+.+++.+.++.. +.++.+.+.| +|+.+.+.++...-. +.+..++.-|.++
T Consensus 197 ~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~--~~~i~leAsG-GIt~~ni~~~a~tGv-D~Isvg~lt~s~~ 268 (277)
T PRK05742 197 ESLDELRQALAAGADIVMLDELSLDDMREAVRLT--AGRAKLEASG-GINESTLRVIAETGV-DYISIGAMTKDVK 268 (277)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh--CCCCcEEEEC-CCCHHHHHHHHHcCC-CEEEEChhhcCCc
Confidence 4566665553 468889999888643 2468899999 999999999886544 5555555444443
No 43
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=38.83 E-value=2.7e+02 Score=24.34 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=66.5
Q ss_pred eCCc-eEEEEeecCccHHHHHHHHHHHhhcCCcC---hhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHH
Q 029084 58 TESG-FEVTVVGYNHKLRILLETIFQKIAQFKVK---PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWM 133 (199)
Q Consensus 58 ~~~g-l~l~i~G~s~kl~~ll~~i~~~l~~~~~~---~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~ 133 (199)
++.| +.+.+.+=..+....++.....++.-... -..=..+.+.+...+.+. .. ++..+......+.. +++
T Consensus 313 sDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss-~~-a~~~~~~~~a~~~~----~~d 386 (429)
T KOG2583|consen 313 SDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSS-VE-ALELATGSQANLVS----EPD 386 (429)
T ss_pred cCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcc-hH-HHHHhhHHHhcCCC----ChH
Confidence 3445 55677777777888888888888775432 222222223333333332 22 55555544433333 789
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCC
Q 029084 134 EELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 134 ~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
+.+..+++++-.|+.+..+++++. ++-...+| |++
T Consensus 387 ~~i~~id~Vt~sdV~~a~kk~~s~-kls~aA~G-nl~ 421 (429)
T KOG2583|consen 387 AFIQQIDKVTASDVQKAAKKFLSG-KLSLAAYG-NLS 421 (429)
T ss_pred HHHHHhccccHHHHHHHHHHhccC-cceeeeec-ccc
Confidence 999999999999999999998832 24556688 876
No 44
>PRK14425 acylphosphatase; Provisional
Probab=38.61 E-value=66 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.7
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|+..+-+
T Consensus 28 ~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 28 EAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 56667887777666778 999999999999888888763
No 45
>smart00311 PWI PWI, domain in splicing factors.
Probab=38.33 E-value=1.1e+02 Score=19.55 Aligned_cols=62 Identities=21% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhc-cCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhccc
Q 029084 94 FSVIKEMVTKEYHNNK-FLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRT 158 (199)
Q Consensus 94 F~~~k~~~~~~~~n~~-~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~ 158 (199)
.+.+|..+.+.+.... .+.+ .++..++..+ ..+ -+++++...|+.+.++|-..|+.++|+..
T Consensus 6 ~~~lk~WI~~kv~e~LG~~d~-~vvd~i~~~l-~~~-~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l 68 (74)
T smart00311 6 LDEIKPWITKKVIEFLGFEED-TLVEFILSQI-RQH-KGPQAKLLQINLTGFEDAEEFVDKLWRLL 68 (74)
T ss_pred HHHHHHHHHHHHHHHHCCChH-HHHHHHHHHH-HhC-CChHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 3445555555555554 2212 3344444444 332 27888889999999999999999988653
No 46
>PRK14429 acylphosphatase; Provisional
Probab=38.31 E-value=75 Score=21.14 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.2
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|++=.+....+| +.+.+.|-.+++..|+..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 24 KARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 56667777666666777 999999999999888887765
No 47
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=37.77 E-value=18 Score=21.02 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=17.6
Q ss_pred CHHHHHHHHH-HHhcccceeEEEe-eCCCCHHHHHHHH
Q 029084 143 EAEDLAKFVP-MMLSRTFLECYIE-TLNLMKQDRLSST 178 (199)
Q Consensus 143 t~ed~~~f~~-~~~~~~~~~~li~-G~Ni~~~~a~~~~ 178 (199)
++++++.+.. ..+++..+..+|- | =||+++..+++
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~-~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKK-LITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcC-ccCHHHHHHHh
Confidence 4555555544 2333334444443 6 66666666654
No 48
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=37.48 E-value=65 Score=16.85 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCcChhHHHHHHHHHH
Q 029084 77 LETIFQKIAQFKVKPDRFSVIKEMVT 102 (199)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~ 102 (199)
+..+-+....--++++.|+..|.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 34455555556789999999998875
No 49
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=37.05 E-value=55 Score=24.82 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 132 WMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 132 ~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
..+..++++++|.||+.+|++++.
T Consensus 60 i~e~~~a~~~it~ed~~~wv~dLv 83 (170)
T PF09568_consen 60 ITEVKEALNKITEEDCINWVKDLV 83 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhe
Confidence 456778999999999999999876
No 50
>PRK14430 acylphosphatase; Provisional
Probab=36.33 E-value=73 Score=21.37 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.6
Q ss_pred chhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHH
Q 029084 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 44 y~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i 80 (199)
..|...|+.=-+....+| +.+.+.|-.+.+..|+..+
T Consensus 25 ~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 25 DAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 356667776555555677 9999999999998888777
No 51
>PRK14440 acylphosphatase; Provisional
Probab=35.72 E-value=75 Score=21.19 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=28.5
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+++..|+..+.
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 62 (90)
T PRK14440 25 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 62 (90)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 45666776556666677 99999999988888887775
No 52
>PRK14449 acylphosphatase; Provisional
Probab=35.57 E-value=85 Score=20.86 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.8
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~~ 83 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+.+.
T Consensus 25 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~~ 64 (90)
T PRK14449 25 KAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKTG 64 (90)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhhC
Confidence 45566776666666777 9999999998988888777654
No 53
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.48 E-value=68 Score=26.46 Aligned_cols=60 Identities=5% Similarity=-0.127 Sum_probs=43.2
Q ss_pred CCHHHHHhhCC---------CCCHHHHHHHHHHHh-cccceeEEEeeCCCCHHHHHHHHHHHHHhhhccccc
Q 029084 130 WPWMEELEVLP---------HLEAEDLAKFVPMML-SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYA 191 (199)
Q Consensus 130 ~~~~~~l~~L~---------~it~ed~~~f~~~~~-~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~ 191 (199)
-+.+|..++++ +.+.+++.+.++..- .+.++.+-+.| +|+.+.+.++...-. +.+.+++.
T Consensus 197 ~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~~~~~~~~leaSG-GI~~~ni~~yA~tGv-D~Is~gal 266 (284)
T PRK06096 197 DTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAPSLAPHCTLSLAG-GINLNTLKNYADCGI-RLFITSAP 266 (284)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEEC-CCCHHHHHHHHhcCC-CEEEECcc
Confidence 35666666554 688899998887543 23578899999 999999999887765 55555544
No 54
>PRK14431 acylphosphatase; Provisional
Probab=34.97 E-value=78 Score=21.10 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.4
Q ss_pred hhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|++=-+....+|+.+.+.|-.+.+..++..+.+
T Consensus 24 ~A~~~gl~G~V~N~~dgVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 24 IAMNYNIVGTVQNVDDYVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHhhcCCEEEEEECCCcEEEEEEcCHHHHHHHHHHHhc
Confidence 45666775555444668999999999999888877765
No 55
>PF14162 YozD: YozD-like protein
Probab=34.89 E-value=36 Score=20.38 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHH
Q 029084 113 PFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK 149 (199)
Q Consensus 113 p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~ 149 (199)
.-++|-..+..+..+++.+.++-+..+.+||++-+.+
T Consensus 10 TEEIAefFy~eL~kRGyvP~e~El~eiADItFeYll~ 46 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPTEEELEEIADITFEYLLE 46 (57)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Confidence 4567777788999999999999899999999987754
No 56
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=33.06 E-value=88 Score=20.44 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=13.8
Q ss_pred HHHHHHHHhccC-CCCCHHHHHhhC
Q 029084 116 LAMYYCSLILQD-QTWPWMEELEVL 139 (199)
Q Consensus 116 ~a~~~~~~ll~~-~~~~~~~~l~~L 139 (199)
++.+++..++.. ..|+.+++.+++
T Consensus 3 HgHeVL~mml~~~~~~t~~~L~~~i 27 (77)
T TIGR03853 3 HGHEVLNLMLASGEPYTRESLKAAI 27 (77)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 455666655553 356766665544
No 57
>PRK14435 acylphosphatase; Provisional
Probab=32.75 E-value=95 Score=20.66 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|++=.+....+| +.+.+.|-.+++..|++.+.
T Consensus 24 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 61 (90)
T PRK14435 24 VAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVA 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 46666776556555666 99999999988888887775
No 58
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=32.23 E-value=1.1e+02 Score=20.15 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=28.1
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|++.+-+
T Consensus 26 ~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 26 IARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 45666776667777788 999999988888888777766
No 59
>PRK14444 acylphosphatase; Provisional
Probab=32.23 E-value=93 Score=20.82 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=29.1
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|++=.+....+| +.+.+.|-.+++..|++.+.
T Consensus 26 ~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 26 RAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred HHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 46667776666666778 99999999999988888765
No 60
>PRK14451 acylphosphatase; Provisional
Probab=31.66 E-value=1e+02 Score=20.50 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=29.6
Q ss_pred chhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 44 y~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
..|...|++=.+....+| +.+.+.|-.+++..|++.+.
T Consensus 24 ~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 24 KLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 356667777666666777 99999998888888877775
No 61
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=31.32 E-value=1.2e+02 Score=23.07 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHhc--ccceeEEEeeCC-CCHHHHH
Q 029084 142 LEAEDLAKFVPMMLS--RTFLECYIETLN-LMKQDRL 175 (199)
Q Consensus 142 it~ed~~~f~~~~~~--~~~~~~li~G~N-i~~~~a~ 175 (199)
=+|+.+++|+..+.. +.-+.++|+| | +|-++-+
T Consensus 99 dSFqKVKnWV~Elr~mlGnei~l~IVG-NKiDLEeeR 134 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRTMLGNEIELLIVG-NKIDLEEER 134 (218)
T ss_pred HHHHHHHHHHHHHHHHhCCeeEEEEec-CcccHHHhh
Confidence 357778899987663 4578889999 7 4544433
No 62
>PRK14436 acylphosphatase; Provisional
Probab=31.09 E-value=1e+02 Score=20.65 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=28.8
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+-
T Consensus 26 ~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14436 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_pred HHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHh
Confidence 45666776666666777 99999999999988888665
No 63
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.75 E-value=73 Score=25.95 Aligned_cols=63 Identities=10% Similarity=-0.007 Sum_probs=43.0
Q ss_pred CCCHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCC
Q 029084 129 TWPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCS 195 (199)
Q Consensus 129 ~~~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (199)
..+.+|..++++ .++++++.+.++..-. ++.+.+.| +|+.+.+.++...-. +.+...+.-|.+
T Consensus 189 v~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~--~ipi~AiG-GI~~~ni~~~a~~Gv-d~Iav~sl~~~a 260 (268)
T cd01572 189 VETLEQLKEALEAGADIIMLDNMSPEELREAVALLKG--RVLLEASG-GITLENIRAYAETGV-DYISVGALTHSA 260 (268)
T ss_pred ECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCC--CCcEEEEC-CCCHHHHHHHHHcCC-CEEEEEeeecCC
Confidence 356677666553 5788888888774322 67899999 999999999886543 444444444433
No 64
>PRK14428 acylphosphatase; Provisional
Probab=30.68 E-value=1e+02 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=29.3
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|++.+.
T Consensus 30 ~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~ 67 (97)
T PRK14428 30 QARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLA 67 (97)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHh
Confidence 46667777666666777 99999999989988888776
No 65
>PRK14445 acylphosphatase; Provisional
Probab=30.46 E-value=1.1e+02 Score=20.43 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=29.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+.
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 26 AASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred HHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 46667777666666778 99999998888888887775
No 66
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=30.28 E-value=65 Score=21.28 Aligned_cols=40 Identities=8% Similarity=-0.010 Sum_probs=31.6
Q ss_pred CCcHHHHHHHHHHhccCC--CCCHHHHHhhCCCCCHHHHHHH
Q 029084 111 LQPFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAKF 150 (199)
Q Consensus 111 ~~p~~~a~~~~~~ll~~~--~~~~~~~l~~L~~it~ed~~~f 150 (199)
..|..|+...+....... .-+...+.++|..|...|+...
T Consensus 41 ~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~ 82 (84)
T cd08803 41 NSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTL 82 (84)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHh
Confidence 447788888887777653 5677889999999999998764
No 67
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=29.70 E-value=88 Score=20.37 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHhccCC--CCCHHHHHhhCCCCCHHHHHHH
Q 029084 113 PFQLAMYYCSLILQDQ--TWPWMEELEVLPHLEAEDLAKF 150 (199)
Q Consensus 113 p~~~a~~~~~~ll~~~--~~~~~~~l~~L~~it~ed~~~f 150 (199)
...++...+......+ .-+...+.++|..+...|+.+-
T Consensus 43 ~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~ 82 (84)
T cd08317 43 LAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEK 82 (84)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHH
Confidence 5677888777666643 4778899999999999998764
No 68
>PRK14446 acylphosphatase; Provisional
Probab=29.50 E-value=1e+02 Score=20.51 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=28.6
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..++..+.
T Consensus 24 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~ 61 (88)
T PRK14446 24 RAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLW 61 (88)
T ss_pred HHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHh
Confidence 46667777777777788 99999998877777766665
No 69
>PRK14427 acylphosphatase; Provisional
Probab=29.45 E-value=1.3e+02 Score=20.28 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=29.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~~ 83 (199)
.|...|++=.+....+| +.+.+.|-.+++..|+..+.+.
T Consensus 28 ~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~~ 67 (94)
T PRK14427 28 KAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNSD 67 (94)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhhC
Confidence 45566776566555677 9999999998888888777754
No 70
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=29.24 E-value=90 Score=26.10 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 143 EAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 143 t~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.+++++.++..- .+..+-+.| ||+.+.+.++...-. +.+..++.-|.++|
T Consensus 248 ~~e~l~~av~~~~--~~~~lEaSG-GIt~~ni~~yA~tGV-D~Is~Galthsa~~ 298 (308)
T PLN02716 248 DVSMLKEAVELIN--GRFETEASG-NVTLDTVHKIGQTGV-TYISSGALTHSVKA 298 (308)
T ss_pred CHHHHHHHHHhhC--CCceEEEEC-CCCHHHHHHHHHcCC-CEEEeCccccCCCc
Confidence 8888888887443 345688999 999999999987765 66666666665443
No 71
>PRK14447 acylphosphatase; Provisional
Probab=29.07 E-value=1.1e+02 Score=20.51 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred hhhhhccEEEEeeeCCc--eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g--l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 26 VANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 45666776666666778 99999999999988888665
No 72
>PRK14438 acylphosphatase; Provisional
Probab=28.94 E-value=1.2e+02 Score=20.22 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=28.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+.
T Consensus 25 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (91)
T PRK14438 25 TAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCH 62 (91)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 45566776666666777 99999999888888877774
No 73
>PF14425 Imm3: Immunity protein Imm3
Probab=28.91 E-value=2.1e+02 Score=20.25 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHh-ccCCC---CCHHHHHhhCCCCCHHHHHHH
Q 029084 75 ILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQT---WPWMEELEVLPHLEAEDLAKF 150 (199)
Q Consensus 75 ~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~---~~~~~~l~~L~~it~ed~~~f 150 (199)
++++.|-+...++.-....-.-+.++...+|.+.... =..+....+..+ +.++. --.+...+.|+++++.++.
T Consensus 8 El~e~i~E~y~e~~~~d~s~~eaiar~~~eye~lg~~-EkiIv~~~igEi~l~~~~i~~~~~~~i~~~L~~~~~~~~~-- 84 (117)
T PF14425_consen 8 ELFEEINEFYDEYLNEDRSYSEAIARTFDEYENLGET-EKIIVDTAIGEILLSHNKIFVGQKEGITKRLSQFDFEEVK-- 84 (117)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHccCcH-HHHHHHHHHHHHHhhcchHHhhHHHHHHHHHHhcChHHHH--
Confidence 3444444444444332234444555666666544211 122222333333 33332 1245677777777777765
Q ss_pred HHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCCC
Q 029084 151 VPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHPS 198 (199)
Q Consensus 151 ~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 198 (199)
| -++.++-.++....=.=+-+....|.+-+|+
T Consensus 85 ---------------~-eLt~eE~~dL~~R~nkVL~~l~~~~idy~p~ 116 (117)
T PF14425_consen 85 ---------------G-ELTQEEKEDLSQRINKVLDGLEKVEIDYNPS 116 (117)
T ss_pred ---------------h-HhhHHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 6 7888888888877766667777888888886
No 74
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=28.87 E-value=30 Score=21.79 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=14.1
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|.+++..
T Consensus 2 ~~g-~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 2 FHG-FISRQEAERLLMQ 17 (77)
T ss_dssp BEE-SSHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHHh
Confidence 479 9999999998876
No 75
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=28.74 E-value=1.2e+02 Score=19.86 Aligned_cols=25 Identities=4% Similarity=0.034 Sum_probs=15.4
Q ss_pred HHHHHHHHHhccC-CCCCHHHHHhhC
Q 029084 115 QLAMYYCSLILQD-QTWPWMEELEVL 139 (199)
Q Consensus 115 ~~a~~~~~~ll~~-~~~~~~~~l~~L 139 (199)
.++..++..++.. .+|+.+++.+++
T Consensus 4 iHgHeVL~mmi~~~~~~t~~~L~~ai 29 (78)
T PF10678_consen 4 IHGHEVLNMMIESGNPYTKEELKAAI 29 (78)
T ss_pred cHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 4566777666554 467777665544
No 76
>PRK14422 acylphosphatase; Provisional
Probab=28.66 E-value=1.3e+02 Score=20.21 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=29.8
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQK 83 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~~ 83 (199)
.|...|+.=-+....+| +.+.+.|-.+++..|+..+.+.
T Consensus 28 ~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 67 (93)
T PRK14422 28 RALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRGD 67 (93)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhC
Confidence 45666776666666777 9999999998988888877763
No 77
>PRK14448 acylphosphatase; Provisional
Probab=28.58 E-value=1.2e+02 Score=20.15 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.9
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|++=.+....+| +.+.+.|-.+++..|++.+.
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 24 EATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 45556666555555677 99999999999888888874
No 78
>PRK14424 acylphosphatase; Provisional
Probab=28.55 E-value=1.2e+02 Score=20.49 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=27.9
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|+..+-
T Consensus 29 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 29 EAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 45566776555555677 99999999999888887775
No 79
>PRK14426 acylphosphatase; Provisional
Probab=27.71 E-value=1.3e+02 Score=20.11 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=28.2
Q ss_pred chhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 44 YYAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 44 y~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
..|...|+.=-+....+| +.+.+.|-.+++..|+..+-+
T Consensus 25 ~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (92)
T PRK14426 25 HEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKE 64 (92)
T ss_pred HHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhc
Confidence 346666776555554555 999999999898888777754
No 80
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=27.30 E-value=2.7e+02 Score=20.94 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=56.6
Q ss_pred CceEEEEeecCccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhh----ccCCcHHHHHHHHHHhccCCCCCHHHH
Q 029084 60 SGFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNN----KFLQPFQLAMYYCSLILQDQTWPWMEE 135 (199)
Q Consensus 60 ~gl~l~i~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~----~~~~p~~~a~~~~~~ll~~~~~~~~~~ 135 (199)
.|+. .-.||-+.+...-..+.+.+.+|.++......+.+-+.+.++.. ..+.+.++|.... .++..+..+.++.
T Consensus 59 RGfv-~~~GWaHa~AH~aD~l~el~~~p~~~~~~~~~lL~~i~~~~~~~~~~~~~~EdeRLa~~~~-~~l~~~~l~~~~~ 136 (175)
T PF10978_consen 59 RGFV-EEKGWAHAFAHGADLLDELVQHPELDRADKIELLAAILEKYKRLSTPFIDGEDERLATALI-ELLNRNKLYQEEL 136 (175)
T ss_pred ccCC-ccCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCcceeCCChhHHHHHHH-HHHHcCCCCHHHH
Confidence 4553 67899999999999999999999999877777777777666662 3445777777666 4444444555555
Q ss_pred HhhCCCC
Q 029084 136 LEVLPHL 142 (199)
Q Consensus 136 l~~L~~i 142 (199)
...|+.+
T Consensus 137 ~~wl~~~ 143 (175)
T PF10978_consen 137 LSWLKSW 143 (175)
T ss_pred HHHHHHH
Confidence 5555443
No 81
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=27.16 E-value=69 Score=20.55 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=20.6
Q ss_pred EeeeCCceEEEEeecCccHHHHHHHHH
Q 029084 55 INHTESGFEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 55 i~~~~~gl~l~i~G~s~kl~~ll~~i~ 81 (199)
++.+.+.+.+.+.|-+++++.|++.+-
T Consensus 31 vd~~~~~~iie~tG~~~kid~fi~~l~ 57 (75)
T PF10369_consen 31 VDVSPDSIIIELTGTPEKIDAFIKLLK 57 (75)
T ss_dssp EEEETTEEEEEEEE-HHHHHHHHHHST
T ss_pred EEECCCEEEEEEcCCHHHHHHHHHHhh
Confidence 355578899999999999988776543
No 82
>PRK14423 acylphosphatase; Provisional
Probab=27.06 E-value=1.3e+02 Score=20.03 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.3
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..|+..+-
T Consensus 27 ~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 64 (92)
T PRK14423 27 TARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCH 64 (92)
T ss_pred HHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 45566776666666777 99999998888777776665
No 83
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=26.88 E-value=2.2e+02 Score=21.97 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHhh----hhhhchhhhhccEE--EEeeeCCceEEE-EeecCcc
Q 029084 20 SSPESEVLTDIFTRLLLDYL----NEYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (199)
Q Consensus 20 ~~~~~~~l~~l~~~ll~~~l----~e~~y~a~~ag~~~--~i~~~~~gl~l~-i~G~s~k 72 (199)
++.+...+...+..+++..+ .-+.|.-+..|..| .....++++.++ .-|||+-
T Consensus 60 ~~kk~~al~Gt~rslI~NMI~GVt~GF~k~L~ivgvgyp~ra~v~g~~l~l~N~LG~sh~ 119 (189)
T PTZ00179 60 GSKIPNSTINTALSHVRNMITGVTKGFRFKVRFAYAHFPISVSVENQLVEIRNFLGEKRV 119 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhcCCEEEEEEEEEeCcceEEEEcCCEEEEEecCCCCcc
Confidence 45666778888888888765 34667777778888 666666677765 6788864
No 84
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=26.73 E-value=86 Score=25.49 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=41.8
Q ss_pred CCCHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCC
Q 029084 129 TWPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANH 193 (199)
Q Consensus 129 ~~~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~ 193 (199)
..+.+|..++++ .++.+++++..+..-. ++.+.+.| +|+.+.+.++...-. +.+..++.-|
T Consensus 185 v~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~~~--~ipi~AsG-GI~~~ni~~~a~~Gv-d~Isvgait~ 254 (265)
T TIGR00078 185 VESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLLKG--RVLLEASG-GITLDNLEEYAETGV-DVISSGALTH 254 (265)
T ss_pred eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcC--CCcEEEEC-CCCHHHHHHHHHcCC-CEEEeCHHHc
Confidence 356666666553 5788999888876422 37789999 999999999887644 4444444333
No 85
>PRK14442 acylphosphatase; Provisional
Probab=26.56 E-value=1.3e+02 Score=20.01 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=29.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+++..++..+-
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (91)
T PRK14442 26 EADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLG 63 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHh
Confidence 56667887777777788 99999998888877777765
No 86
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=26.33 E-value=93 Score=17.49 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHhcccceeEEEee
Q 029084 141 HLEAEDLAKFVPMMLSRTFLECYIET 166 (199)
Q Consensus 141 ~it~ed~~~f~~~~~~~~~~~~li~G 166 (199)
-.+.+|+..|++.+ ++ .--++|+|
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHG 40 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHG 40 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESS
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecC
Confidence 35689999999998 55 77788888
No 87
>PRK14443 acylphosphatase; Provisional
Probab=26.14 E-value=1.3e+02 Score=20.20 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=27.8
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..+++.+..
T Consensus 26 ~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 26 VAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 45666776555554556 999999998888777777755
No 88
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=25.81 E-value=1.6e+02 Score=22.10 Aligned_cols=25 Identities=4% Similarity=-0.185 Sum_probs=13.4
Q ss_pred eEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 161 ECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 161 ~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
-+++.| +.+.+++.+++...++..+
T Consensus 87 Yli~~g-~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 87 YLILIG-TPDEEDVADALKATLEDVL 111 (158)
T ss_pred EEEEeC-CCCHHHHHHHHHHHHHHHH
Confidence 344455 5555555555555554443
No 89
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.61 E-value=2.2e+02 Score=26.76 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHhhcCC
Q 029084 31 FTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK 88 (199)
Q Consensus 31 ~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l~~~~ 88 (199)
....+...|+...-++..||.+.+++...+.-.+.+.|..+-++..+...+..+..+.
T Consensus 469 ~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~ 526 (696)
T TIGR02110 469 LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAA 526 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCC
Confidence 5566788899999999999999999999988999999999999999999999999873
No 90
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.34 E-value=3.7e+02 Score=21.77 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 029084 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (199)
Q Consensus 25 ~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l~~~~-----------~---~ 90 (199)
..++.++...+.+.+.+. ..+|+.+.+.|--+.+|.-+...++.+.+.+ + .
T Consensus 80 ~~Lm~l~~~~l~~~~~~~---------------~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~Ygg 144 (253)
T PRK14836 80 SALMELFLKALDREVDKL---------------HRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGG 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCC
Confidence 446667666665544331 1368889999988888887777777665432 1 2
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC
Q 029084 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (199)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~ 128 (199)
.++...+..++.+..++.... |..+.-..+...|+.+
T Consensus 145 R~EI~~A~k~l~~~~~~g~l~-~~~i~e~~i~~~L~~~ 181 (253)
T PRK14836 145 RWDIVTAARALAREVAAGKLA-PDEIDEALLAQHLALA 181 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-hHhCCHHHHHHHhccC
Confidence 344445555555555544443 5555555555555543
No 91
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=25.29 E-value=1.3e+02 Score=25.15 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=84.0
Q ss_pred hhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHh--hcCC-----cChhHHHHHHHHHHHHhhhhccCC---cHH-
Q 029084 47 QVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI--AQFK-----VKPDRFSVIKEMVTKEYHNNKFLQ---PFQ- 115 (199)
Q Consensus 47 ~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l--~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~---p~~- 115 (199)
...|+.-.|-....||.-+|+|..+.+..++..+...- .... .++..|.++|-++.+++=...... |..
T Consensus 31 ~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~kkEIV~lg~~ddv~p~~~ 110 (308)
T COG1054 31 KALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWRLKVKLKKEIVALGVEDDVDPLEN 110 (308)
T ss_pred HHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcceEEEeehhhheecCCCCCcCcccc
Confidence 34677778888889999999999999988887776543 1111 245779999888888876544321 321
Q ss_pred -----HHHHHHHHhccCCC---------CC--HHHHHhhC--CCCCHHHHHHHHHHHh---cccceeEEEeeCCCCHHHH
Q 029084 116 -----LAMYYCSLILQDQT---------WP--WMEELEVL--PHLEAEDLAKFVPMML---SRTFLECYIETLNLMKQDR 174 (199)
Q Consensus 116 -----~a~~~~~~ll~~~~---------~~--~~~~l~~L--~~it~ed~~~f~~~~~---~~~~~~~li~G~Ni~~~~a 174 (199)
...+ ...++..+. |. +-.-..|+ +.-||.+|-.|++++. .+-.+-++-.| .|--|.|
T Consensus 111 vG~yl~p~~-wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTG-GIRCEKa 188 (308)
T COG1054 111 VGTYLSPKD-WNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTG-GIRCEKA 188 (308)
T ss_pred ccCccCHHH-HHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCC-ceeehhh
Confidence 1122 223333221 11 11122233 2466778877777655 44478889999 9999999
Q ss_pred HHHHHH
Q 029084 175 LSSTLK 180 (199)
Q Consensus 175 ~~~~~~ 180 (199)
...+..
T Consensus 189 s~~m~~ 194 (308)
T COG1054 189 SAWMKE 194 (308)
T ss_pred HHHHHH
Confidence 886654
No 92
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=25.06 E-value=1.9e+02 Score=18.60 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhh
Q 029084 73 LRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (199)
Q Consensus 73 l~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (199)
+..+++.+-+.+.+.++++++|..+.+-+.+-=+
T Consensus 8 ~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 8 MARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 4567777788888889999999999887766544
No 93
>PRK14433 acylphosphatase; Provisional
Probab=25.02 E-value=1.6e+02 Score=19.50 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=27.5
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|=.+.+..|++.+.
T Consensus 23 ~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 60 (87)
T PRK14433 23 KARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLR 60 (87)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 45556776556666677 99999999888877777774
No 94
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=24.92 E-value=50 Score=21.11 Aligned_cols=16 Identities=0% Similarity=-0.080 Sum_probs=14.2
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|.+++..
T Consensus 4 ~~g-~i~r~~Ae~lL~~ 19 (84)
T smart00252 4 YHG-FISREEAEKLLKN 19 (84)
T ss_pred ecc-cCCHHHHHHHHhc
Confidence 589 9999999998866
No 95
>PRK14421 acylphosphatase; Provisional
Probab=24.82 E-value=1.5e+02 Score=20.29 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=28.5
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+++..|++.+.
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 26 TAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred HHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 45566776666666778 99999999988888887775
No 96
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.54 E-value=1.1e+02 Score=24.81 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCCHHHHHhhCC---------CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHH
Q 029084 129 TWPWMEELEVLP---------HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMF 182 (199)
Q Consensus 129 ~~~~~~~l~~L~---------~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~ 182 (199)
..+.+|..++++ ..+.+++.+.++..-...++.+.+.| +|+.+.+.++...-.
T Consensus 188 v~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~~~~~i~i~asG-GIt~~ni~~~a~~Ga 249 (269)
T cd01568 188 VETLEEAEEALEAGADIIMLDNMSPEELKEAVKLLKGLPRVLLEASG-GITLENIRAYAETGV 249 (269)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhccCCCeEEEEEC-CCCHHHHHHHHHcCC
Confidence 456677666653 46778888777654332467889999 999999999876543
No 97
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=24.35 E-value=2.5e+02 Score=21.63 Aligned_cols=37 Identities=8% Similarity=0.291 Sum_probs=28.9
Q ss_pred ccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHhhc
Q 029084 50 GLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQ 86 (199)
Q Consensus 50 g~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l~~ 86 (199)
...+.+....+++.|.+.|+.+.+.+....|-+....
T Consensus 24 ~~~~~v~~k~n~l~I~i~G~~~eike~~~~Ik~~~~~ 60 (190)
T PF09840_consen 24 SIYIYVEVKGNSLKIEIQGYEKEIKEAIRRIKELVRR 60 (190)
T ss_pred CcEEEEEEeCCEEEEEEecChHHHHHHHHHHHHHHHH
Confidence 3455677777999999999999888887777666554
No 98
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.26 E-value=1.4e+02 Score=20.14 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccceeE-EEeeCCCCHHHHHHHHHHH
Q 029084 117 AMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLEC-YIETLNLMKQDRLSSTLKM 181 (199)
Q Consensus 117 a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~-li~G~Ni~~~~a~~~~~~~ 181 (199)
....++.++.+ .+....++.|++=.+..|+++-+++-+-+. =-.|.++++++|++++--+
T Consensus 15 eAAaFRrLv~H-----L~~rsdvQNIDLMnLAgFCRNCLs~Wy~eaae~~gv~lskd~aRE~VyGM 75 (104)
T COG3492 15 EAAAFRRLVEH-----LQERSDVQNIDLMNLAGFCRNCLSNWYREAAEAQGVDLSKDQAREIVYGM 75 (104)
T ss_pred HHHHHHHHHHH-----HHHhcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHhCC
Confidence 33445555543 334567788888888899988776653332 3356578999999887544
No 99
>PRK14434 acylphosphatase; Provisional
Probab=24.04 E-value=1.9e+02 Score=19.37 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred hhhhhc-cEEEEeeeCCc-eEEEEeecC-ccHHHHHHHHHH
Q 029084 45 YAQVAG-LDYGINHTESG-FEVTVVGYN-HKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag-~~~~i~~~~~g-l~l~i~G~s-~kl~~ll~~i~~ 82 (199)
.|...| +.=.+....+| +.+.+.|-. +++..|+..+.+
T Consensus 24 ~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 24 LALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 455566 76666666778 999999986 588777777654
No 100
>PRK14441 acylphosphatase; Provisional
Probab=23.70 E-value=1.6e+02 Score=19.63 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=28.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..+++.+.
T Consensus 27 ~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 27 EARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred HHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 46667776666666778 99999998888887777764
No 101
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=23.65 E-value=2e+02 Score=21.58 Aligned_cols=37 Identities=3% Similarity=-0.172 Sum_probs=24.6
Q ss_pred ceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCC
Q 029084 159 FLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSH 196 (199)
Q Consensus 159 ~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
-+.+++.| +.+.++..+++...++..+.+.+-.|-++
T Consensus 85 GFYli~~g-~~~~~~i~~l~~~~l~~i~~~~~eIPga~ 121 (157)
T PF02664_consen 85 GFYLILWG-DPSSEDIADLLKETLEFILEFEGEIPGAN 121 (157)
T ss_dssp EEEEEEES-S--HHHHHHHHHHHHHHHHT-SSSSTT-S
T ss_pred ccEEEEeC-CCCHHHHHHHHHHHHHHHHhcCCCCCCcC
Confidence 34567789 88899999999888888888775444443
No 102
>KOG3460 consensus Small nuclear ribonucleoprotein (snRNP) LSM3 [RNA processing and modification]
Probab=23.26 E-value=29 Score=22.87 Aligned_cols=46 Identities=13% Similarity=0.320 Sum_probs=38.7
Q ss_pred ceEEEEeecCccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhh
Q 029084 61 GFEVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYH 106 (199)
Q Consensus 61 gl~l~i~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~ 106 (199)
-+.=+++||.+++.-.+..+-+.+.....+++.|+.+.....+.+.
T Consensus 27 el~G~L~afD~HlNmvL~d~eetit~~e~~E~~~e~~~k~~~r~~e 72 (91)
T KOG3460|consen 27 ELRGTLHAFDEHLNMVLGDVEETITTVEIDEDTYEEIVKTTKRTVE 72 (91)
T ss_pred hhhcchhhhHHhhhhhhhhhhheEEEeeccchhHHHHHhhhhccee
Confidence 4556789999999999999999999999999999988777666543
No 103
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.06 E-value=2.2e+02 Score=21.99 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCCC---HHHHHhhCC--CCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHH
Q 029084 117 AMYYCSLILQDQTWP---WMEELEVLP--HLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKM 181 (199)
Q Consensus 117 a~~~~~~ll~~~~~~---~~~~l~~L~--~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~ 181 (199)
+.......+..+.|+ .+|...++. =|+.+++.++.++ .+..+++.+.| .--+++..++.+.+
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~--rp~~~evVlTG-R~~p~~Lie~ADlV 169 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA--RPGMQHVVITG-RGAPRELIEAADLV 169 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc--CCCCCEEEEEC-CCCCHHHHHhCchh
Confidence 444455666666666 678777774 5999999999874 77789999999 66666666665444
No 104
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=22.89 E-value=2.2e+02 Score=20.10 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCC----cChhHHHHHHHHHHHHhhhhccCCcHHH
Q 029084 74 RILLETIFQKIAQFK----VKPDRFSVIKEMVTKEYHNNKFLQPFQL 116 (199)
Q Consensus 74 ~~ll~~i~~~l~~~~----~~~~~F~~~k~~~~~~~~n~~~~~p~~~ 116 (199)
-.+++++-+.|..-. .+.+.+..+|..+.+.|..+....|.++
T Consensus 39 LHILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~e 85 (113)
T PRK00810 39 LHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQ 85 (113)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhHH
Confidence 345666666666443 2357789999999999999998878553
No 105
>PRK14452 acylphosphatase; Provisional
Probab=22.76 E-value=1.6e+02 Score=20.41 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=27.6
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i 80 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|.+.+
T Consensus 42 ~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l 78 (107)
T PRK14452 42 RALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWC 78 (107)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHH
Confidence 56677887777777788 9999999988887774433
No 106
>PRK14437 acylphosphatase; Provisional
Probab=22.73 E-value=1.7e+02 Score=20.31 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.8
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=.+....+| +.+.+.|-.+.+..|+..+-
T Consensus 45 ~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 45 KAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred HHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 46667777666666778 99999998888877777764
No 107
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=22.67 E-value=1e+02 Score=20.73 Aligned_cols=20 Identities=10% Similarity=-0.300 Sum_probs=18.0
Q ss_pred EEeeCCCCHHHHHHHHHHHHH
Q 029084 163 YIETLNLMKQDRLSSTLKMFS 183 (199)
Q Consensus 163 li~G~Ni~~~~a~~~~~~~~~ 183 (199)
.++| +++++++.+++..++.
T Consensus 60 v~Y~-~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 60 VAYG-PVTPADVASLLDAGAL 79 (92)
T ss_pred EEEE-eCCHHHHHHHHHHHhh
Confidence 6799 9999999999999874
No 108
>KOG4107 consensus MP1 adaptor interacting protein P14 [Signal transduction mechanisms]
Probab=22.59 E-value=2.6e+02 Score=19.43 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=37.3
Q ss_pred hhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHh
Q 029084 38 YLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKI 84 (199)
Q Consensus 38 ~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l 84 (199)
.|.+.+-+|-..|.+-++-.+..|.-+.-+||-||-..+-..|+..+
T Consensus 6 ALtqVLsQaNTgGV~~tlLln~EG~LLAYsGygdkdarvtaAiasni 52 (125)
T KOG4107|consen 6 ALTQVLSQANTGGVDGTLLLNKEGLLLAYSGYGDKDARVTAAIASNI 52 (125)
T ss_pred HHHHHHhhcccCCccceEEEcCCCcEEEecccCcchhHHHHHHHHHH
Confidence 45566677788899888888999999999999999766666666555
No 109
>PRK14450 acylphosphatase; Provisional
Probab=22.59 E-value=1.8e+02 Score=19.27 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=27.5
Q ss_pred hhhhhccEEEEeeeCCc--eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG--FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g--l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..|+..+-
T Consensus 24 ~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~ 62 (91)
T PRK14450 24 QATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR 62 (91)
T ss_pred HHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 45566776555555677 89999998888888887774
No 110
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=22.18 E-value=1.4e+02 Score=21.02 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=21.8
Q ss_pred eEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCC
Q 029084 161 ECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHC 194 (199)
Q Consensus 161 ~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (199)
-.++.| |++..|+.+-+.++- .+...+..+||
T Consensus 54 ~~l~RG-~v~~~di~~~i~~ik-~~~~~~Fv~W~ 85 (126)
T PF03953_consen 54 ALLYRG-DVSPKDINEAIAKIK-QKNSIQFVDWI 85 (126)
T ss_dssp EEEEEE-SSTHHHHHHHHHHHH-CTSTTSB-SSS
T ss_pred hhcccc-ccccchhhhHHHhhh-hccccceeeec
Confidence 348899 999999999887775 33333344444
No 111
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=21.94 E-value=1.9e+02 Score=20.16 Aligned_cols=37 Identities=3% Similarity=-0.140 Sum_probs=27.5
Q ss_pred cceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCC
Q 029084 158 TFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCS 195 (199)
Q Consensus 158 ~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (199)
+++++-..| +++.++-.++...+.+-+-.-.++|++|
T Consensus 59 A~~~l~siG-~~~~~~n~~~s~~i~~~l~~~LgIp~dR 95 (113)
T PTZ00450 59 AYVRVEAWG-EYAPSKPKMMTPRITAAITKECGIPAER 95 (113)
T ss_pred EEEEEEEec-CcCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 478888899 9998887887777765555566777654
No 112
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=21.81 E-value=1.3e+02 Score=25.86 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=42.8
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHH
Q 029084 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 2 F~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~ 81 (199)
|.+|...|-+.=+-+....-++--+...+|..|-...+.- +++..+|+..- +.-|+++|.+=+.+.
T Consensus 168 ~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~YLgLTG~rl~G--aD~~~~GlATH------------yv~S~~l~~Lee~L~ 233 (401)
T KOG1684|consen 168 FAMPETGIGLFPDVGASYFLSRLPGYLGLYLGLTGQRLSG--ADALRCGLATH------------YVPSEKLPSLEERLL 233 (401)
T ss_pred ecccccccccccCccceeehhhCccHHHHhhhhccceecc--hHHHHhcchhh------------ccchhhhhHHHHHHh
Confidence 3445444444433333222222233444444444444444 66666666522 345677887777777
Q ss_pred HHhhcCCcChhHHHHHHHHHHHHhhhhccC
Q 029084 82 QKIAQFKVKPDRFSVIKEMVTKEYHNNKFL 111 (199)
Q Consensus 82 ~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~ 111 (199)
..+.+. +++ ..+..+.+|......
T Consensus 234 ~~l~~d--p~~----~I~~~l~~y~~~~~~ 257 (401)
T KOG1684|consen 234 KNLNDD--PQS----VINETLEKYASPAKD 257 (401)
T ss_pred hhcCCC--cHH----HHHHHHHHhcccCCC
Confidence 433321 111 244555555555433
No 113
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=21.80 E-value=64 Score=20.93 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=14.2
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|..++..
T Consensus 3 ~~g-~i~r~~Ae~~L~~ 18 (94)
T cd00173 3 YHG-PISREEAEELLKK 18 (94)
T ss_pred ccc-CCCHHHHHHHHhc
Confidence 489 9999999998875
No 114
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=21.71 E-value=3.5e+02 Score=20.41 Aligned_cols=53 Identities=6% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHHhh----hhhhchhhhhccEE--EEeeeCCceEEE-EeecCcc
Q 029084 20 SSPESEVLTDIFTRLLLDYL----NEYAYYAQVAGLDY--GINHTESGFEVT-VVGYNHK 72 (199)
Q Consensus 20 ~~~~~~~l~~l~~~ll~~~l----~e~~y~a~~ag~~~--~i~~~~~gl~l~-i~G~s~k 72 (199)
++.+...+...+..+++..+ .-+.+.-+..|..| ......+.+.++ --|||+-
T Consensus 53 ~~k~~~a~~gt~rsli~NmI~GVt~Gf~~~LeivGvGy~~ra~~~g~~L~l~n~LG~Sh~ 112 (170)
T TIGR03653 53 ARKKDKAMVGTYRSHIKNMIKGVTEGFEYKMKVVYSHFPMQVKVEGNKVVIENFLGEKAP 112 (170)
T ss_pred CCHHHHHHHHHHHHHHHhheeecccCeEEEEEEEeccccEEEEEcCCeEEEeecccccee
Confidence 35666778888888888765 33555666667666 544444555554 4677753
No 115
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=20.94 E-value=92 Score=19.44 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.5
Q ss_pred EEeecCccHHHHHHHHHHHhhcC
Q 029084 65 TVVGYNHKLRILLETIFQKIAQF 87 (199)
Q Consensus 65 ~i~G~s~kl~~ll~~i~~~l~~~ 87 (199)
.+++|++.+.+++.+|.+.|-..
T Consensus 17 ~~Yd~S~dlaeFy~rVSk~I~~~ 39 (64)
T PF11693_consen 17 NVYDYSDDLAEFYGRVSKYIESA 39 (64)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999998888654
No 116
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.90 E-value=3.9e+02 Score=20.45 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc---CCCCCHHHHHhhCCCCCH-HH
Q 029084 71 HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ---DQTWPWMEELEVLPHLEA-ED 146 (199)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~---~~~~~~~~~l~~L~~it~-ed 146 (199)
+.++.+++.|+..|..++-.+.-|...-+ + ..-...... +.+-....+..++. .+..+++++.+.|+.+.+ ++
T Consensus 10 ~~f~~l~~~i~~~L~~~k~~~~~~~~~~e-f-~~~~~~~~~-dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL~~lgL~~e 86 (180)
T cd04755 10 QQFSRLTEILFEFLLEPKESERLLNQLDE-F-AGENGISLG-PLKNIVKSILLVPNGALKRNLTAEQLREDLIQLGLSEE 86 (180)
T ss_pred HHHHHHHHHHHHHHhccchHhHHHHHHHH-H-HHhcCCCHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHH
Confidence 57899999999999876644544544444 3 221112121 33434444433343 345788899999988887 44
Q ss_pred HH
Q 029084 147 LA 148 (199)
Q Consensus 147 ~~ 148 (199)
-.
T Consensus 87 ka 88 (180)
T cd04755 87 KA 88 (180)
T ss_pred HH
Confidence 33
No 117
>PRK14135 recX recombination regulator RecX; Provisional
Probab=20.87 E-value=3.1e+02 Score=21.91 Aligned_cols=50 Identities=8% Similarity=0.181 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCC
Q 029084 92 DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHL 142 (199)
Q Consensus 92 ~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~i 142 (199)
+..+.++....+.++......|...-.-+...+++. -|+.+....+|+..
T Consensus 210 ~e~e~l~~~~~k~~~k~~~~~~~k~k~K~~~~L~rr-GF~~~~I~~~l~~~ 259 (263)
T PRK14135 210 EEQELLQKELEKAYRKYSKYDGYELKQKLKQALYRK-GFSYDDIDSFLREY 259 (263)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHh
Confidence 345666655555555443322444333344444444 47777766666543
No 118
>PRK14432 acylphosphatase; Provisional
Probab=20.55 E-value=2.3e+02 Score=18.96 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=29.0
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEe-ecCccHHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVV-GYNHKLRILLETIFQK 83 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~-G~s~kl~~ll~~i~~~ 83 (199)
.|...|+.=.+....+| +.+.+. |-.+++..++..+.+.
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~g 64 (93)
T PRK14432 24 IANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKNG 64 (93)
T ss_pred HHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHhC
Confidence 45666776555555677 999998 9999998888766553
No 119
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.33 E-value=4.7e+02 Score=21.13 Aligned_cols=136 Identities=12% Similarity=0.146 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHHhhcCC-----------c---C
Q 029084 25 EVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQKIAQFK-----------V---K 90 (199)
Q Consensus 25 ~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~l~~~~-----------~---~ 90 (199)
..+.+++...+.+.+... ..+|+.|.+.|--+.+|.-+...+..+...+ + .
T Consensus 80 ~~Lm~L~~~~l~~~~~~~---------------~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Ygg 144 (249)
T PRK14834 80 SDLFGLLRLFIRRDLAEL---------------HRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGS 144 (249)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCC
Confidence 556777777666543221 1468888888877777777766666554432 1 2
Q ss_pred hhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHH-HHhhCCCCCHHHHHHHHHHHhcccceeEEEeeC--
Q 029084 91 PDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWME-ELEVLPHLEAEDLAKFVPMMLSRTFLECYIETL-- 167 (199)
Q Consensus 91 ~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~-~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~-- 167 (199)
.++...+..++.++..+...+ |..+.-..+...|+.+..+..| ++.+=....+.+|.=| .-.+.++++...
T Consensus 145 r~EI~~A~k~~~~~~~~g~~~-~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSnFLlW-----Q~~yaElyF~~~lW 218 (249)
T PRK14834 145 RDEIARAVRRLAREVAEGRLD-PASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLW-----QAAYSELLFVPIHW 218 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-hhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHH-----hHhheEEEeCCCCC
Confidence 455555555666665555444 6555556666666644333222 2222233334444333 233455555441
Q ss_pred -CCCHHHHHHHHHHH
Q 029084 168 -NLMKQDRLSSTLKM 181 (199)
Q Consensus 168 -Ni~~~~a~~~~~~~ 181 (199)
++++.+-...+..+
T Consensus 219 Pdf~~~d~~~al~~y 233 (249)
T PRK14834 219 PDFDKAALEAAIEEY 233 (249)
T ss_pred CcCCHHHHHHHHHHH
Confidence 22444544444444
No 120
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.10 E-value=1.9e+02 Score=19.06 Aligned_cols=57 Identities=5% Similarity=0.032 Sum_probs=38.2
Q ss_pred CCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC--CCCCHHHHHhhCCCCCHHHHHHHH
Q 029084 87 FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD--QTWPWMEELEVLPHLEAEDLAKFV 151 (199)
Q Consensus 87 ~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~--~~~~~~~~l~~L~~it~ed~~~f~ 151 (199)
..+++..-+.++.. ....-..|+...+...... ...+.+.+..+|.++...|+.+..
T Consensus 25 L~vs~~dI~~I~~e--------~p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~ 83 (84)
T cd08805 25 LQFSVEDINRIRVE--------NPNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNML 83 (84)
T ss_pred cCCCHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhh
Confidence 34566555555443 2222457777777666653 357888999999999999998753
Done!