Query 029084
Match_columns 199
No_of_seqs 107 out of 881
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 11:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 99.9 1.6E-23 5.4E-28 193.7 23.9 184 2-187 519-703 (939)
2 3cww_A Insulysin, insulin-degr 99.9 4.3E-22 1.5E-26 185.2 24.5 185 1-186 537-724 (990)
3 3gwb_A Peptidase M16 inactive 99.7 1.6E-16 5.4E-21 134.6 18.0 182 4-188 33-224 (434)
4 3cx5_A Cytochrome B-C1 complex 99.7 7.3E-17 2.5E-21 136.4 14.4 179 4-186 20-205 (431)
5 1pp9_B Ubiquinol-cytochrome C 99.7 5.4E-16 1.8E-20 131.5 15.4 177 4-183 42-225 (439)
6 3amj_B Zinc peptidase inactive 99.7 2.5E-16 8.6E-21 133.1 13.2 182 4-187 23-216 (424)
7 3d3y_A Uncharacterized protein 99.7 3.4E-15 1.2E-19 125.7 16.4 176 4-186 22-224 (425)
8 3eoq_A Putative zinc protease; 99.6 1.1E-14 3.7E-19 122.7 16.0 182 4-188 21-210 (406)
9 1hr6_A Alpha-MPP, mitochondria 99.6 9.3E-15 3.2E-19 125.8 15.6 181 4-187 24-212 (475)
10 3hdi_A Processing protease; CA 99.6 1.1E-14 3.8E-19 123.1 14.9 183 3-188 20-210 (421)
11 3ami_A Zinc peptidase; alpha/b 99.6 4.9E-14 1.7E-18 120.1 16.0 185 3-188 25-217 (445)
12 3cx5_B Cytochrome B-C1 complex 99.6 8.1E-14 2.8E-18 115.1 14.6 180 3-187 9-195 (352)
13 1pp9_A Ubiquinol-cytochrome C 99.5 2E-13 6.9E-18 116.3 15.1 182 4-187 32-221 (446)
14 1hr6_B Beta-MPP, mitochondrial 99.5 3.2E-13 1.1E-17 114.6 15.2 181 5-187 27-215 (443)
15 3go9_A Insulinase family prote 99.4 1.2E-12 4.2E-17 113.4 10.9 180 3-188 46-239 (492)
16 2fge_A Atprep2;, zinc metallop 99.4 1.3E-12 4.5E-17 121.6 11.2 182 2-187 570-786 (995)
17 1q2l_A Protease III; hydrolase 99.3 1E-10 3.6E-15 108.1 15.3 183 4-188 40-235 (939)
18 3cww_A Insulysin, insulin-degr 99.1 1.4E-09 4.8E-14 101.1 14.2 183 3-187 53-251 (990)
19 3ih6_A Putative zinc protease; 98.8 4.8E-07 1.6E-11 68.4 15.6 157 4-166 22-192 (197)
20 3s5m_A Falcilysin; M16 metallo 98.7 1E-07 3.5E-12 90.3 13.0 175 8-188 112-328 (1193)
21 2fge_A Atprep2;, zinc metallop 98.6 1.8E-07 6E-12 87.2 10.7 162 23-186 71-260 (995)
22 3gwb_A Peptidase M16 inactive 98.4 2.4E-06 8.1E-11 71.8 12.5 161 6-170 249-422 (434)
23 3hdi_A Processing protease; CA 98.4 1.4E-05 4.9E-10 66.9 16.2 162 4-170 232-405 (421)
24 3amj_B Zinc peptidase inactive 98.4 5.7E-06 1.9E-10 69.3 13.7 162 5-170 241-415 (424)
25 3eoq_A Putative zinc protease; 98.4 6.9E-06 2.4E-10 68.6 14.1 161 5-170 234-405 (406)
26 1pp9_B Ubiquinol-cytochrome C 98.4 2.1E-05 7.2E-10 66.0 16.5 160 5-169 251-430 (439)
27 3cx5_A Cytochrome B-C1 complex 98.3 1.2E-05 4.1E-10 67.3 14.3 107 62-170 302-414 (431)
28 1hr6_B Beta-MPP, mitochondrial 98.3 4E-05 1.4E-09 64.5 16.9 107 62-170 317-429 (443)
29 1hr6_A Alpha-MPP, mitochondria 98.3 2.1E-05 7.1E-10 67.3 14.7 161 5-169 242-437 (475)
30 3ami_A Zinc peptidase; alpha/b 98.3 3.6E-05 1.2E-09 65.0 16.0 161 7-169 245-422 (445)
31 3d3y_A Uncharacterized protein 98.2 8.9E-05 3E-09 61.7 17.3 158 5-166 253-420 (425)
32 1pp9_A Ubiquinol-cytochrome C 98.2 5.7E-05 2E-09 63.8 15.2 108 62-171 320-430 (446)
33 3go9_A Insulinase family prote 97.9 0.00066 2.3E-08 58.4 16.0 162 5-166 265-446 (492)
34 3s5m_A Falcilysin; M16 metallo 97.9 4.8E-05 1.6E-09 72.2 9.3 179 4-186 737-955 (1193)
35 3gnn_A Nicotinate-nucleotide p 57.2 6.6 0.00022 31.4 2.8 63 131-197 218-289 (298)
36 3l0g_A Nicotinate-nucleotide p 54.3 9.2 0.00031 30.6 3.1 63 131-197 216-287 (300)
37 2zrr_A Mundticin KS immunity p 40.8 83 0.0028 21.3 6.6 77 66-142 27-111 (118)
38 3cx5_B Cytochrome B-C1 complex 38.5 57 0.0019 25.5 5.6 110 24-170 233-344 (352)
39 1qpo_A Quinolinate acid phosph 34.2 24 0.00081 27.9 2.6 65 131-197 203-277 (284)
40 1eoq_A GAG polyprotein capsid 31.6 1.1E+02 0.0037 19.9 5.0 63 92-155 9-73 (96)
41 1vq8_E 50S ribosomal protein L 31.2 1.1E+02 0.0036 22.4 5.5 52 20-71 55-113 (178)
42 1zav_U 50S ribosomal protein L 31.1 22 0.00077 17.9 1.3 24 131-154 2-25 (30)
43 2fhm_A Probable acylphosphatas 30.3 72 0.0025 20.2 4.1 38 45-82 24-62 (91)
44 1ulr_A Putative acylphosphatas 29.1 74 0.0025 20.1 3.9 37 45-81 24-61 (88)
45 3paj_A Nicotinate-nucleotide p 29.0 22 0.00076 28.6 1.7 52 140-195 258-309 (320)
46 1dd4_C 50S ribosomal protein L 26.5 53 0.0018 17.7 2.4 29 132-160 3-31 (40)
47 3tl4_X Glutaminyl-tRNA synthet 26.2 1.9E+02 0.0066 21.1 7.8 116 67-194 45-164 (187)
48 1urr_A CG18505 protein; acylph 25.9 92 0.0031 20.2 4.1 37 45-81 33-70 (102)
49 2bjd_A Acylphosphatase; hypert 25.6 90 0.0031 20.3 4.0 37 45-81 36-73 (101)
50 2vh7_A Acylphosphatase-1; hydr 25.0 94 0.0032 20.0 4.0 37 45-81 30-67 (99)
51 1w2i_A Acylphosphatase; hydrol 24.2 80 0.0027 20.1 3.4 36 45-80 26-62 (91)
52 4dh4_A MIF; trimer, isomerase; 24.0 82 0.0028 20.6 3.6 38 157-195 57-94 (114)
53 2dlz_A Protein VAV-2; RHO fami 23.3 56 0.0019 21.7 2.6 17 163-180 18-34 (118)
54 2gv1_A Probable acylphosphatas 22.6 77 0.0026 20.2 3.1 36 45-80 26-62 (92)
55 2ysx_A Signaling inositol poly 22.0 61 0.0021 21.5 2.6 17 163-180 12-28 (119)
56 1i3z_A EWS/FLI1 activated tran 21.6 47 0.0016 21.3 1.9 16 164-180 6-21 (103)
57 3djh_A Macrophage migration in 20.7 89 0.003 20.5 3.2 37 158-195 57-93 (114)
58 1nrv_A Growth factor receptor- 20.4 51 0.0017 21.3 1.9 16 164-180 8-23 (105)
59 1jyr_A Growth factor receptor- 20.2 43 0.0015 21.3 1.5 16 164-180 6-21 (96)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.92 E-value=1.6e-23 Score=193.74 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=175.3
Q ss_pred CCCc-eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHH
Q 029084 2 FSTP-KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 2 F~~P-k~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i 80 (199)
|++| ++.|.+.+.+|....++++.+++.++..++.+.+.+..|.+.++|++++++. .+|+.++++|++++++.+++.+
T Consensus 519 f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll 597 (939)
T 1q2l_A 519 FASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQAL 597 (939)
T ss_dssp CTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHH
T ss_pred cCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHH
Confidence 7776 9999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccce
Q 029084 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (199)
.+.+.+|.+++++|+++|+++++.|+|...++|..++...+..+++.++|+..+.++.|+++|++|+.+|+++++++.++
T Consensus 598 ~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~ 677 (939)
T 1q2l_A 598 LEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP 677 (939)
T ss_dssp HHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999997767999999999999998889999999999999999999999999999999
Q ss_pred eEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 161 ECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 161 ~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
+++|+| |++.+++..++..+++.++.
T Consensus 678 ~~~vvG-n~~~~~~~~l~~~~~~~l~~ 703 (939)
T 1q2l_A 678 EFMVIG-NMTEAQATTLARDVQKQLGA 703 (939)
T ss_dssp EEEEEE-SCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHHHHcc
Confidence 999999 99999999999888866653
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.90 E-value=4.3e-22 Score=185.17 Aligned_cols=185 Identities=36% Similarity=0.548 Sum_probs=173.6
Q ss_pred CCCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHH
Q 029084 1 MFSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 1 ~F~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i 80 (199)
+|++|++.+++.+.+|....++++.+++.+++.++.+.+++..|.+.++|++++++.+.+|+.++++|++++++.+++.+
T Consensus 537 ~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll 616 (990)
T 3cww_A 537 KFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKI 616 (990)
T ss_dssp SCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHH
T ss_pred ccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHH
Confidence 38899999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccce
Q 029084 81 FQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (199)
Q Consensus 81 ~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (199)
.+.+.++.+++++|+.+|+++.++++|...+.|+.+|...+..+++.+.|..++.++.|++++++|+.+|+++++++.++
T Consensus 617 ~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~ 696 (990)
T 3cww_A 617 IEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHI 696 (990)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence 99999999999999999999999999998866999999999999998889988899999999999999999999999999
Q ss_pred eEEEeeCCCCHHHHHHHH---HHHHHhhh
Q 029084 161 ECYIETLNLMKQDRLSST---LKMFSLRA 186 (199)
Q Consensus 161 ~~li~G~Ni~~~~a~~~~---~~~~~~~~ 186 (199)
+++|+| |++.+++..++ .+.+..++
T Consensus 697 ~~~v~G-n~~~~~~~~~~~~~~~~l~~l~ 724 (990)
T 3cww_A 697 EALLHG-NITKQAALGIMQMVEDTLIEHA 724 (990)
T ss_dssp EEEEEE-SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEc-CCCHHHHHHHHHHHHHHHhccC
Confidence 999999 99999999884 44554444
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.73 E-value=1.6e-16 Score=134.56 Aligned_cols=182 Identities=12% Similarity=0.086 Sum_probs=156.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhchhhhhccEEEEeeeCCceEEEEeecCcc--HHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQVAGLDYGINHTESGFEVTVVGYNHK--LRIL 76 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~k--l~~l 76 (199)
.|++.+.+.+..+.... +...+++.++..++...... ........|.+++...+.++..+.++|++++ ++.+
T Consensus 33 ~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~ 111 (434)
T 3gwb_A 33 LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPA 111 (434)
T ss_dssp SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHH
T ss_pred CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHH
Confidence 49999999999998877 77888999999998765533 2222333477888888889999999999999 9999
Q ss_pred HHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHH
Q 029084 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPM 153 (199)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~~l~~L~~it~ed~~~f~~~ 153 (199)
++.+.+.+.++.+++++|++.|+.+.+++++... .|...+...+..+++.+ .|. .....+.+++++.+|+.+|+++
T Consensus 112 l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~ 190 (434)
T 3gwb_A 112 LKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQ-NPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAK 190 (434)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999844 59999999888888753 343 3346789999999999999999
Q ss_pred HhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 154 MLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 154 ~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
++.+.++.++|+| |++.+++.+++.++++.++..
T Consensus 191 ~y~~~~~~l~v~G-~~~~~~~~~~~~~~~~~l~~~ 224 (434)
T 3gwb_A 191 AYAAGNVVIALVG-DLSRSDAEAIAAQVSAALPKG 224 (434)
T ss_dssp HSCGGGEEEEEEE-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hcCcCCeEEEEEc-CCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999 999999999999999877654
No 4
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.72 E-value=7.3e-17 Score=136.38 Aligned_cols=179 Identities=17% Similarity=0.107 Sum_probs=156.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLETIFQK 83 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~i~~~ 83 (199)
.|++.+.+.+..|....++...+++.++..++...... |.+...|.+++...+.++..+.+++++++++.+++.+.+.
T Consensus 20 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~ 97 (431)
T 3cx5_A 20 AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQS 97 (431)
T ss_dssp CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHH
Confidence 48999999999999888888899999999998766543 5678899999999999999999999999999999999999
Q ss_pred hhcCC---cChhHHHHHHHHHHHHhhhhccCCc-HHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 029084 84 IAQFK---VKPDRFSVIKEMVTKEYHNNKFLQP-FQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (199)
Q Consensus 84 l~~~~---~~~~~F~~~k~~~~~~~~n~~~~~p-~~~a~~~~~~ll~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (199)
+.+|. ++++.|++.|+.+.+++++...+ | ...+...+...++.+ . ++.....+.|++++.+|+.+|+++++.
T Consensus 98 ~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~ 176 (431)
T 3cx5_A 98 FIQQKANLLSSSNFEATKKSVLKQVQDFEDN-DHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFL 176 (431)
T ss_dssp HHTCSTTTTCHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSC
T ss_pred HhCcccccCCHHHHHHHHHHHHHHHHhhhcC-chhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCC
Confidence 99999 99999999999999999986555 9 999988888877753 2 445556788889999999999999999
Q ss_pred ccceeEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 157 RTFLECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
+.++.+.|+| |++.+++.+++.+++..++
T Consensus 177 ~~~~~l~v~G-~~~~~~~~~~~~~~~~~~~ 205 (431)
T 3cx5_A 177 NSNAVVVGTG-NIKHEDLVNSIESKNLSLQ 205 (431)
T ss_dssp GGGEEEEEEE-SCCHHHHHHHHTTSCCCSS
T ss_pred CCcEEEEEEc-CCCHHHHHHHHHHHhCCCC
Confidence 9999999999 9999999998877543443
No 5
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.69 E-value=5.4e-16 Score=131.46 Aligned_cols=177 Identities=6% Similarity=-0.014 Sum_probs=154.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.|++.+.+.+..|....++...+++.++..++.... .+........|.+++...+.+++.+.++|++++++.+++
T Consensus 42 ~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 121 (439)
T 1pp9_B 42 APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILME 121 (439)
T ss_dssp CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHH
Confidence 589999999999988887788899999998886543 245555566788999998899999999999999999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCC--CCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT--WPWMEELEVLPHLEAEDLAKFVPMMLS 156 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~--~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (199)
.+.+.+.++.++++.|++.|+.+.+++++...+ |...+...+...++.+. ++.....+.|++++.+|+.+|+++++.
T Consensus 122 ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~ 200 (439)
T 1pp9_B 122 FLLNVTTAPEFRRWEVAALQPQLRIDKAVALQN-PQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFT 200 (439)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHhcCCCCCCccCCHHHHhhcCHHHHHHHHHHhCC
Confidence 999999999999999999999999999986554 99999988887777542 344567789999999999999999999
Q ss_pred ccceeEEEeeCCCCHHHHHHHHHHHHH
Q 029084 157 RTFLECYIETLNLMKQDRLSSTLKMFS 183 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~~~~~~ 183 (199)
+.++.++|+| | +.+++.+++.++++
T Consensus 201 ~~~~~l~v~G-~-~~~~~~~~~~~~~~ 225 (439)
T 1pp9_B 201 SARMALIGLG-V-SHPVLKQVAEQFLN 225 (439)
T ss_dssp GGGEEEEEES-S-CHHHHHHHHHHHCC
T ss_pred CCceEEEEeC-C-CHHHHHHHHHHHhC
Confidence 9999999999 9 99999999988874
No 6
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.69 E-value=2.5e-16 Score=133.06 Aligned_cols=182 Identities=9% Similarity=0.056 Sum_probs=152.5
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-------hhhchhhh--hccEEEEeeeCCceEEEEeecCccH-
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-------EYAYYAQV--AGLDYGINHTESGFEVTVVGYNHKL- 73 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-------e~~y~a~~--ag~~~~i~~~~~gl~l~i~G~s~kl- 73 (199)
.|++.+.+.+..+....++...+++.++..++..... ...+...+ .|.+++...+.++..+.++++++++
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~ 102 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAE 102 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHH
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccC
Confidence 5899999999999888888888999999999876333 22233333 3677888888889999999999998
Q ss_pred -HHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccC-CCCCHHHHHhhCCCCCHHHHHHHH
Q 029084 74 -RILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQD-QTWPWMEELEVLPHLEAEDLAKFV 151 (199)
Q Consensus 74 -~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~-~~~~~~~~l~~L~~it~ed~~~f~ 151 (199)
+.+++.+.+.+.+|.++++.|++.|+.+..++++... .|...+...+...++. +.|......+.|++++.+|+.+|+
T Consensus 103 l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~ 181 (424)
T 3amj_B 103 RNSALTILRDILAHPTFPAPVLERERARAIAGLREAQT-QPGSILGRRFTELAYGKHPYGHVSSVATLQKISRDQLVSFH 181 (424)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHTTSGGGCCCCHHHHHHCCHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999998755 4999999988887775 333211155677889999999999
Q ss_pred HHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 152 PMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 152 ~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
++++.+.++.+.|+| |++.+++.+++.+.++.++.
T Consensus 182 ~~~y~~~~~~l~v~G-d~~~~~~~~~~~~~f~~~~~ 216 (424)
T 3amj_B 182 RTHYVARTAVVTLVG-DITRAEAETIAQQLTADLPA 216 (424)
T ss_dssp HHHSCTTSCEEEEEE-SCCHHHHHHHHHHTTTTSCC
T ss_pred HHhcCCCceEEEEEe-CCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999 99999999999998866653
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.66 E-value=3.4e-15 Score=125.75 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=145.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhh----hchhhhh---ccEEEEeeeCCc----eEEEEeecCc-
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEY----AYYAQVA---GLDYGINHTESG----FEVTVVGYNH- 71 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~----~y~a~~a---g~~~~i~~~~~g----l~l~i~G~s~- 71 (199)
.|++.+.+.+..|...++ .+++.++..++....... .+...++ |.+++...+.++ +.+.++++++
T Consensus 22 ~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~ 98 (425)
T 3d3y_A 22 YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDH 98 (425)
T ss_dssp CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGG
T ss_pred cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChh
Confidence 489999999999876543 477889988888766443 3444444 777777766555 7999999998
Q ss_pred ------cHHHHHHHHHHHhhcCC-----cChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-C-CCCC--HHHHH
Q 029084 72 ------KLRILLETIFQKIAQFK-----VKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-D-QTWP--WMEEL 136 (199)
Q Consensus 72 ------kl~~ll~~i~~~l~~~~-----~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~-~~~~--~~~~l 136 (199)
+++.+++.+.+.+.+|. ++++.|++.|+.+.+++++...+ |...+...+...++ . +.+. .....
T Consensus 99 ~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 177 (425)
T 3d3y_A 99 YLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVED-KQTYASLALQSVYFNQSEDQKIPSFGTV 177 (425)
T ss_dssp GCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTTTCTTTTSCTTCCH
T ss_pred hccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHhccCCCCccCCCCCCH
Confidence 69999999999999999 99999999999999999986555 99999998888887 3 3333 44567
Q ss_pred hhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 137 EVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 137 ~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
+.|++++.+|+.+|+++++.+.++.+.|+| |++.+++.+++ +.++ ++
T Consensus 178 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G-~~~~~~~~~~~-~~~~-~~ 224 (425)
T 3d3y_A 178 AALAEETAASLAAYYQKMLAEDQVDIFVLG-DVNEAELVPLF-KQLP-FT 224 (425)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHSEEEEEEEE-SCCHHHHHHHH-HTSC-CC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCeEEEEEC-CCCHHHHHHHH-HhCC-CC
Confidence 778889999999999999999999999999 99999999999 8886 54
No 8
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.62 E-value=1.1e-14 Score=122.73 Aligned_cols=182 Identities=9% Similarity=0.019 Sum_probs=155.8
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.|.+.+.+.+..++...++...+++.++..++-.... +.....+..|.+++...+.+...+.+++.+++++..++
T Consensus 21 ~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 100 (406)
T 3eoq_A 21 ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLG 100 (406)
T ss_dssp CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHH
Confidence 5889999999999988888889999999998865432 33333445688888888889999999999999999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
.+.+.+ +|.++++.|++.|..+..+++....+ |...+...+...++.+ + ++.....+.++++|.+|+.+|+++++
T Consensus 101 ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y 178 (406)
T 3eoq_A 101 LFAKLL-RPALREEDFQTEKLVILEEIARYQDR-PGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRY 178 (406)
T ss_dssp HHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhC
Confidence 999999 99999999999999999999987655 9999999888888753 3 33344667788899999999999999
Q ss_pred cccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 156 SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 156 ~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
.+.++.+.|+| |++.+++.+++.+.++..+..
T Consensus 179 ~p~n~~l~v~G-d~~~~~~~~~i~~~f~~~~~~ 210 (406)
T 3eoq_A 179 LPKNMVLAATG-RVDFDRLLAEAERLTEAWPEG 210 (406)
T ss_dssp CGGGEEEEEEE-SCCHHHHHHHHHHHHTTCCCC
T ss_pred CccCEEEEEEc-CCCHHHHHHHHHHHhcCCCCC
Confidence 99999999999 999999999999998776643
No 9
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.62 E-value=9.3e-15 Score=125.78 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=158.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.|++.+.+.+..++...++...+++.++..|+.... .+.....+..|.+++...+.++..+.+++++++++.+++
T Consensus 24 ~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ 103 (475)
T 1hr6_A 24 GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQ 103 (475)
T ss_dssp CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHH
Confidence 488999999999998888888999999988886543 355566677788999988889999999999999999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-C--CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-T--WPWMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~--~~~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
.+.+.+.++.+++++|++.|+.+.+++++...+ |...+...+..+++.+ . ++.....+.|++++.+|+.+|+++++
T Consensus 104 ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y 182 (475)
T 1hr6_A 104 LMSETVRFPKITEQELQEQKLSAEYEIDEVWMK-PELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFY 182 (475)
T ss_dssp HHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhC
Confidence 999999999999999999999999999986544 9999999998888854 2 33445678899999999999999999
Q ss_pred cccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 156 SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 156 ~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
.+.++.+.|+| ++.+++.+++.+.++.++.
T Consensus 183 ~p~n~~l~v~G--~d~~~~~~~i~~~f~~~~~ 212 (475)
T 1hr6_A 183 TPENTVAAFVG--VPHEKALELTGKYLGDWQS 212 (475)
T ss_dssp CGGGEEEEEES--SCHHHHHHHHHHHHTTCCC
T ss_pred CcccEEEEEeC--CCHHHHHHHHHHHhccCCC
Confidence 99999999999 9999999999999876653
No 10
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.61 E-value=1.1e-14 Score=123.07 Aligned_cols=183 Identities=11% Similarity=0.113 Sum_probs=154.8
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
..|.+.+.+.+..++..+++...+++.++..++..... +........|.+++...+.+...+.+++.+++++.++
T Consensus 20 ~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l 99 (421)
T 3hdi_A 20 TVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAI 99 (421)
T ss_dssp TCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHH
Confidence 35889999999999988888889999999988865432 2333334457788888888889999999999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CC--CHHHHHhhCCCCCHHHHHHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMM 154 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~~~l~~L~~it~ed~~~f~~~~ 154 (199)
+.+.+.+.+|.++++.|++.|+.+..+++....+ |...+...+...++.+ .| +.....+.+++++.+|+.+|++++
T Consensus 100 ~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~ 178 (421)
T 3hdi_A 100 DTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDT-PDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRF 178 (421)
T ss_dssp HHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHh
Confidence 9999999999999999999999999999987655 9999999888888754 33 333456777889999999999999
Q ss_pred hcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 155 LSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 155 ~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
+.+.++.+.|+| |++ +++.+++.+.++.++..
T Consensus 179 y~p~n~~l~v~G-d~~-~~~~~~v~~~f~~~~~~ 210 (421)
T 3hdi_A 179 YTGDYVVISVAG-NVH-DELIDKIKETFSQVKPT 210 (421)
T ss_dssp SSTTTEEEEEEE-SCC-HHHHHHHHHHTTSSCCC
T ss_pred cCcccEEEEEEe-CCC-HHHHHHHHHHhcCCCCC
Confidence 999999999999 999 99999999998766543
No 11
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.58 E-value=4.9e-14 Score=120.05 Aligned_cols=185 Identities=8% Similarity=0.047 Sum_probs=152.0
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
..|.+.+.+.+..+....++...+++.++..++-... .+........|.+++...+.+...+.+++.+++++.++
T Consensus 25 ~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l 104 (445)
T 3ami_A 25 RAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVM 104 (445)
T ss_dssp TSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHH
Confidence 5689999999999888777777888888888775443 22333334456677777778888888899999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMM 154 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~ 154 (199)
+.+.+.+.+|.++++.|++.|..+..+++....+.|...+...+...++.+ .|. .....+.++++|.+++.+|++++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~ 184 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRW 184 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHh
Confidence 999999999999999999999999999994444459988888888877753 332 33456777889999999999999
Q ss_pred hcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 155 LSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 155 ~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
+.+.++.+.|+| |++.+++.+++.+.++.++..
T Consensus 185 y~p~n~~l~vvG-d~d~~~~~~~v~~~f~~~~~~ 217 (445)
T 3ami_A 185 YGPNNATVVVVG-DVEHEAVFRLAEQTYGKLARV 217 (445)
T ss_dssp CSGGGEEEEEEE-SCCHHHHHHHHHHTGGGSCCC
T ss_pred CCccceEEEEEc-CCCHHHHHHHHHHHhcCCCCC
Confidence 999999999999 999999999999999777643
No 12
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.55 E-value=8.1e-14 Score=115.05 Aligned_cols=180 Identities=9% Similarity=0.075 Sum_probs=149.6
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhh-----hhhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYL-----NEYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l-----~e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
..|.+.+.+.+..+....+ ..+++.++..++.... .+........|.+++...+.++..+.+++.+++++.++
T Consensus 9 ~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l 86 (352)
T 3cx5_B 9 PTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYV 86 (352)
T ss_dssp SCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHH
T ss_pred CCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHH
Confidence 3588899999988876543 5688888888875433 23444455678888888888999999999999999999
Q ss_pred HHHHHHhhcCCcChhHHH-HHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhc
Q 029084 78 ETIFQKIAQFKVKPDRFS-VIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLS 156 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~-~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~ 156 (199)
+.+.+.+.+|.++++.|+ +.|+.+..++++...+ |..++...+...++.+.|...-..+.+++++.+|+.+|+++++.
T Consensus 87 ~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~-p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~ 165 (352)
T 3cx5_B 87 NALADVLYKTAFKPHELTESVLPAARYDYAVAEQC-PVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYT 165 (352)
T ss_dssp HHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCC
Confidence 999999999999999998 9999999999975554 99999888887777554443323789999999999999999999
Q ss_pred ccceeEEEeeCCCCHHHHHHHH-HHHHHhhhc
Q 029084 157 RTFLECYIETLNLMKQDRLSST-LKMFSLRAQ 187 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~-~~~~~~~~~ 187 (199)
+.++.+.|+| ++.+++.+++ .++++.++.
T Consensus 166 ~~n~~l~v~G--~~~~~~~~~i~~~~f~~~~~ 195 (352)
T 3cx5_B 166 KENLEVSGEN--VVEADLKRFVDESLLSTLPA 195 (352)
T ss_dssp GGGEEEEEES--SCHHHHHHHHHHSTTTTSCC
T ss_pred cCcEEEEEeC--CCHHHHHHHHHHHhhccCCC
Confidence 9999999999 8999999999 788866653
No 13
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.53 E-value=2e-13 Score=116.29 Aligned_cols=182 Identities=11% Similarity=0.090 Sum_probs=150.2
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLE 78 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~ 78 (199)
.|.+.+.+.+..+...+++...+++.++..++..... +........|.+++...+.++..+.+++.+++++..++
T Consensus 32 ~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ 111 (446)
T 1pp9_A 32 QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVE 111 (446)
T ss_dssp CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHH
Confidence 3788899999998887777788899999888854332 22222333477788888888899999999999999999
Q ss_pred HHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHh
Q 029084 79 TIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMML 155 (199)
Q Consensus 79 ~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~ 155 (199)
.+.+.+.++.++++.|++.|+.+..+++....+ |...+...+...++.+ .|. .....+.|++++.+++.+|+++++
T Consensus 112 ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y 190 (446)
T 1pp9_A 112 LLADIVQNCSLEDSQIEKERDVILQELQENDTS-MRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHY 190 (446)
T ss_dssp HHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999999999999986555 9888888887777743 332 234566677889999999999999
Q ss_pred cccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 156 SRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 156 ~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
.+.++.+.|+| |++.+++.+++.+.++.++.
T Consensus 191 ~p~n~~l~v~G-d~~~~~~~~~i~~~f~~~~~ 221 (446)
T 1pp9_A 191 KAPRMVLAAAG-GLEHRQLLDLAQKHFSGLSG 221 (446)
T ss_dssp CGGGEEEEEEE-SCCHHHHHHHHHHHHTTSCS
T ss_pred CCCCEEEEEEc-CCCHHHHHHHHHHHhccCCC
Confidence 99999999999 99999999999999876654
No 14
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.51 E-value=3.2e-13 Score=114.63 Aligned_cols=181 Identities=6% Similarity=0.044 Sum_probs=148.2
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN-----EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILLET 79 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll~~ 79 (199)
|.+.+.+.+..+....++...+++.++..++..... +..-.....|.+++...+.+...+.+++.+++++.+++.
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~l 106 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDI 106 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHH
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHH
Confidence 478899999998887777778888888888754321 222222334677777777888999999999999999999
Q ss_pred HHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHHHHhhCCCCCHHHHHHHHHHHhc
Q 029084 80 IFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPHLEAEDLAKFVPMMLS 156 (199)
Q Consensus 80 i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~~l~~L~~it~ed~~~f~~~~~~ 156 (199)
+.+.+.+|.++++.|++.|+.+..+++....+ |...+...+...++.+ .|. .....+.+++++.+++.+|+++++.
T Consensus 107 l~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~ 185 (443)
T 1hr6_B 107 LSDILTKSVLDNSAIERERDVIIRESEEVDKM-YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYK 185 (443)
T ss_dssp HHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCC-hHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCc
Confidence 99999999999999999999999999987555 9998988888777753 332 2235566778999999999999999
Q ss_pred ccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 157 RTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
+.++.+.|+| |++.+++.+++.+.++.++.
T Consensus 186 ~~n~~l~v~G-d~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 186 GDRMVLAGAG-AVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp GGGEEEEEEE-SCCHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEEEEc-CCCHHHHHHHHHHHhcCCCC
Confidence 9999999999 99999999999999977664
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.40 E-value=1.2e-12 Score=113.43 Aligned_cols=180 Identities=12% Similarity=-0.000 Sum_probs=137.3
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhc---------hhhhhccEEEEeeeCCceEEEEeecC---
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAY---------YAQVAGLDYGINHTESGFEVTVVGYN--- 70 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y---------~a~~ag~~~~i~~~~~gl~l~i~G~s--- 70 (199)
..|++.+.+.++.++..+++...+++.++..|+......... .....|.+++...+.+...+.++..+
T Consensus 46 ~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~ 125 (492)
T 3go9_A 46 PSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRP 125 (492)
T ss_dssp TTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCH
T ss_pred CCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcH
Confidence 457899999999999998889999999999999765432111 11124555666666778888888888
Q ss_pred ccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHH--HHHhccCCCCCHHHHHhhCCCCCHHHHH
Q 029084 71 HKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY--CSLILQDQTWPWMEELEVLPHLEAEDLA 148 (199)
Q Consensus 71 ~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~--~~~ll~~~~~~~~~~l~~L~~it~ed~~ 148 (199)
++++..++.+.+.+.++.++++.|++.|..+.+.++....+ |...+... +......+.+. .+.++++|.+|+.
T Consensus 126 ~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~i~~it~~dL~ 200 (492)
T 3go9_A 126 DLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQN-IQEPWWRYRLKGSSLIGHDPG----QPVTQPVDVEKLK 200 (492)
T ss_dssp HHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSC-TTCHHHHHHTTTSTTTTCCTT----CCCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHhccCCcccCCCc----hhhhhcCCHHHHH
Confidence 78999999999999999999999999988666666554433 54333221 11111122222 2678999999999
Q ss_pred HHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 149 KFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 149 ~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
+|+++++.+.++.+.|+| |++.+++.+++.+.|+.++..
T Consensus 201 ~fy~~~Y~p~n~~l~vvG-dvd~~~~~~~i~~~f~~~~~~ 239 (492)
T 3go9_A 201 QFYQQWYTPDAMTLYVVG-NVDSRSIAAQISKAFSELKGK 239 (492)
T ss_dssp HHHHHHCCGGGEEEEEEE-SCCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhcCcCceEEEEEc-CCCHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999 999999999999999776544
No 16
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.39 E-value=1.3e-12 Score=121.64 Aligned_cols=182 Identities=13% Similarity=0.106 Sum_probs=144.9
Q ss_pred CCCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhch-------hhhhccEE-EE--eeeC-----CceEEE
Q 029084 2 FSTPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAYY-------AQVAGLDY-GI--NHTE-----SGFEVT 65 (199)
Q Consensus 2 F~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~ag~~~-~i--~~~~-----~gl~l~ 65 (199)
|..|.+++.+.+..+.. ++....+..+++.++.+ .+....|. +..+|+++ ++ +.+. .++.++
T Consensus 570 ~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~ 647 (995)
T 2fge_A 570 FTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVR 647 (995)
T ss_dssp CCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEE
Confidence 67789999999888654 55667788999999886 55433332 34556677 44 4434 689999
Q ss_pred EeecCccHHHHHHHHHHHhhcCCcChh-HHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCC-CC-----------H
Q 029084 66 VVGYNHKLRILLETIFQKIAQFKVKPD-RFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT-WP-----------W 132 (199)
Q Consensus 66 i~G~s~kl~~ll~~i~~~l~~~~~~~~-~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~-~~-----------~ 132 (199)
+++++++++.+++.+.+.+.++.++++ +|+++|++++.++++...++|+.+|...+..++.... +. .
T Consensus 648 ~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~ 727 (995)
T 2fge_A 648 GKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFL 727 (995)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHH
T ss_pred EEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHH
Confidence 999999999999999999999999998 9999999999999999877689988988877655321 11 1
Q ss_pred HHHH----hhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCH-HHHHHHHHHHHHhh-hc
Q 029084 133 MEEL----EVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMK-QDRLSSTLKMFSLR-AQ 187 (199)
Q Consensus 133 ~~~l----~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~-~~a~~~~~~~~~~~-~~ 187 (199)
.++. +.++.+ .+++.+|+++++++.+++++|+| |++. +++.+++.+.++.+ +.
T Consensus 728 ~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~G-d~~~~~~~~~~~~~~~~~l~p~ 786 (995)
T 2fge_A 728 HTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTA-DGKSLTNVEKSVAKFLDLLPEN 786 (995)
T ss_dssp HHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEE-CHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEe-CHHHHHHHHHHHHHHHHhhCcc
Confidence 2222 557889 99999999999999999999999 9995 88889998888766 53
No 17
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.25 E-value=1e-10 Score=108.09 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=151.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRILL 77 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~------e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~ll 77 (199)
.|++.+.+.+..++..+.+...+++.++.-|+-.... +..-..+..|.+.+...+.+...+.+...++.++..+
T Consensus 40 ~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L 119 (939)
T 1q2l_A 40 AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAV 119 (939)
T ss_dssp CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHH
T ss_pred CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHH
Confidence 5789999999999888888888999999888865432 2333334567788888888888888888999999999
Q ss_pred HHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CCC--HHHHHhhCCC----CCHHHHHHH
Q 029084 78 ETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TWP--WMEELEVLPH----LEAEDLAKF 150 (199)
Q Consensus 78 ~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~~--~~~~l~~L~~----it~ed~~~f 150 (199)
..+.+.+.+|.++++.|++-|..+..+++....+ |...+...+..+++++ +|. .....+.|++ ++.+++.+|
T Consensus 120 ~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f 198 (939)
T 1q2l_A 120 DRLADAIAEPLLDKKYAERERNAVNAELTMARTR-DGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDF 198 (939)
T ss_dssp HHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999987665 8777888888888753 332 3345566777 999999999
Q ss_pred HHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 151 VPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 151 ~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
+++++.+.++.+.|+| |++.+++.+++.+.|+..+..
T Consensus 199 ~~~~Y~p~n~~l~v~G-~~~~~~l~~~v~~~f~~~~~~ 235 (939)
T 1q2l_A 199 HEKYYSANLMKAVIYS-NKPLPELAKMAADTFGRVPNK 235 (939)
T ss_dssp HHHHCCTTTCEEEEEE-SSCHHHHHHHHHHTGGGSCCC
T ss_pred HHhccCHhheEEEEEc-CCCHHHHHHHHHHHhhhhccC
Confidence 9999999999999999 999999999999999776543
No 18
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.08 E-value=1.4e-09 Score=101.14 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=145.9
Q ss_pred CCceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhh------hhhchhhhhccEEEEeeeCCceEEEEeecCccHHHH
Q 029084 3 STPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLN------EYAYYAQVAGLDYGINHTESGFEVTVVGYNHKLRIL 76 (199)
Q Consensus 3 ~~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~------e~~y~a~~ag~~~~i~~~~~gl~l~i~G~s~kl~~l 76 (199)
..|++.+.+.+..++..+.+...+++.++.-|+-.... +..-.....|...+...+.+.....+...++.++.+
T Consensus 53 ~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~ 132 (990)
T 3cww_A 53 TTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGA 132 (990)
T ss_dssp TCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHH
T ss_pred CCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHH
Confidence 35899999999999888777888999999888765432 222222335666666666777778888899999999
Q ss_pred HHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CC--CHHHHHhhCCCC-------CHHH
Q 029084 77 LETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHL-------EAED 146 (199)
Q Consensus 77 l~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~~~l~~L~~i-------t~ed 146 (199)
+..+.+.+.+|.++++.|++.|..+..+++....+ |...+...+..++.++ +| ......+.|.++ +.++
T Consensus 133 l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~-~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~ 211 (990)
T 3cww_A 133 LDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMN-DAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQE 211 (990)
T ss_dssp HHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHH
Confidence 99999999999999999999999999999987665 7667777777777643 32 222344555555 9999
Q ss_pred HHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhc
Q 029084 147 LAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQ 187 (199)
Q Consensus 147 ~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~ 187 (199)
+.+|+++++.+.++.+.|+| |++.+++.+++.+.|+..+.
T Consensus 212 l~~f~~~~Y~p~n~~l~v~G-d~~~~~~~~~i~~~f~~~~~ 251 (990)
T 3cww_A 212 LLKFHSAYYSSNLMAVVVLG-RESLDDLTNLVVKLFSEVEN 251 (990)
T ss_dssp HHHHHHHHCCGGGEEEEEEE-SSCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhCCHhheEEEEEc-CCCHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999 99999999999999976654
No 19
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.77 E-value=4.8e-07 Score=68.38 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=110.3
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hhhhhhchhhhhccEEEEeee-----CCc-eEEEEeecCc-c
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD----YLNEYAYYAQVAGLDYGINHT-----ESG-FEVTVVGYNH-K 72 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~----~l~e~~y~a~~ag~~~~i~~~-----~~g-l~l~i~G~s~-k 72 (199)
.|...+.+-+..|... ++ ......++..+|.. .|.+.+.. . |+.|++++. ..| +.+.+..-.+ +
T Consensus 22 ~~~~~v~~~~~~~~~~-~~-d~~al~vl~~iLggg~sSrL~~~lre--~-gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAG-SP-DFVGLDLAATILADTPSSRLYHALVP--T-KLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CCSCEEEEEEECCCTT-ST-THHHHHHHHHHHHSSTTSHHHHHHTT--T-TSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCCceEEEEEecCCCC-CC-cHHHHHHHHHHHcCCCCchHHHHHHh--c-CceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 4566677777777643 33 44556677777764 34333332 1 444444332 123 4555555455 5
Q ss_pred HHHHHHHHHHHhhcC---CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHH
Q 029084 73 LRILLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAK 149 (199)
Q Consensus 73 l~~ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~ 149 (199)
...+++.+.+.|... .+++++|+++|.++..++...... |...+..+....+....-...+..+.++++|.+|+++
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~ 175 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD-PEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQR 175 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888777665 589999999999999999876554 8888888877777643335678899999999999999
Q ss_pred HHHHHhcccceeEEEee
Q 029084 150 FVPMMLSRTFLECYIET 166 (199)
Q Consensus 150 f~~~~~~~~~~~~li~G 166 (199)
+.++++.+.+...+++|
T Consensus 176 ~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 176 AAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHSSGGGCEEEEEC
T ss_pred HHHHhCCccCeEEEEEe
Confidence 99999988777777777
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.73 E-value=1e-07 Score=90.29 Aligned_cols=175 Identities=8% Similarity=0.006 Sum_probs=131.0
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhchhhh--hccEEEEeeeCCceEEEEeecC-ccHHHHHHH
Q 029084 8 FVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNE-----YAYYAQV--AGLDYGINHTESGFEVTVVGYN-HKLRILLET 79 (199)
Q Consensus 8 ~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~--ag~~~~i~~~~~gl~l~i~G~s-~kl~~ll~~ 79 (199)
.+.+-+.++. +...+++.++.-++-..... ....... .|-..+...+.+.....+...+ +.++.++..
T Consensus 112 ~f~vg~~tep----~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l 187 (1193)
T 3s5m_A 112 AFAFYVKTLT----HSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGV 187 (1193)
T ss_dssp EEEEEEECCC----SSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCCC----CCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHH
Confidence 3455555543 33457777877777654422 2222222 3444555555677777887777 889999999
Q ss_pred HHHHhhcCCcChhH--HHHH-----------------------------HHHHHHHhhhhccCCcHHHHHHHHHHhccCC
Q 029084 80 IFQKIAQFKVKPDR--FSVI-----------------------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ 128 (199)
Q Consensus 80 i~~~l~~~~~~~~~--F~~~-----------------------------k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~ 128 (199)
+.+.+.+|.++++. |..- |..+..+++.... .|..++...+...++++
T Consensus 188 ~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~-~p~~~~~~~l~~~lf~~ 266 (1193)
T 3s5m_A 188 YMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALS-SPLEDLYHEEMKYMFPD 266 (1193)
T ss_dssp HHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTT-CHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhC-CHHHHHHHHHHHHhCCC
Confidence 99999999988877 8664 3467778877744 49999999988888854
Q ss_pred -C--CCHHHHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcc
Q 029084 129 -T--WPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQT 188 (199)
Q Consensus 129 -~--~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~ 188 (199)
. ++.....+.+.++|++|+.+|++.++.+.++.+.|+| |++.+++.+++.++|+..+..
T Consensus 267 hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~G-did~~~~~~~v~~~f~~~~~~ 328 (1193)
T 3s5m_A 267 NVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFS-KNNPTELLNFVDQYLGQLDYS 328 (1193)
T ss_dssp SGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEE-SSCTHHHHHHHHHHHTTCCGG
T ss_pred CCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEe-cCCHHHHHHHHHHHhccCCCC
Confidence 3 3445577888999999999999999999999999999 999999999999999776543
No 21
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.61 E-value=1.8e-07 Score=87.18 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh----chh---hhhccEEEEeeeCCceEEEEeec-CccHHHHHHHHHHHhhcCCc--Chh
Q 029084 23 ESEVLTDIFTRLLLDYLNEYA----YYA---QVAGLDYGINHTESGFEVTVVGY-NHKLRILLETIFQKIAQFKV--KPD 92 (199)
Q Consensus 23 ~~~~l~~l~~~ll~~~l~e~~----y~a---~~ag~~~~i~~~~~gl~l~i~G~-s~kl~~ll~~i~~~l~~~~~--~~~ 92 (199)
...+++.++.-|+-......- +.. ...|-..+...+.+.....+..- .+.++.++..+.+.+.+|.+ +++
T Consensus 71 ~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~ 150 (995)
T 2fge_A 71 DSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAH 150 (995)
T ss_dssp SSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSH
T ss_pred CCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 345777777777743322211 111 11233344444445555555443 46899999999999999999 999
Q ss_pred HHHHH---------------HHHHHHHhhhhccCCcHHHHHHHHHHhccCC-CC--CHHHHHhhCCCCCHHHHHHHHHHH
Q 029084 93 RFSVI---------------KEMVTKEYHNNKFLQPFQLAMYYCSLILQDQ-TW--PWMEELEVLPHLEAEDLAKFVPMM 154 (199)
Q Consensus 93 ~F~~~---------------k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~-~~--~~~~~l~~L~~it~ed~~~f~~~~ 154 (199)
.|++- |..+..+++....+ |...+...+...++++ .| +.....+.|+++|.+++++|++++
T Consensus 151 ~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~-p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~ 229 (995)
T 2fge_A 151 TFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQ-PDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQY 229 (995)
T ss_dssp HHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTS-HHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHH
T ss_pred HHHHhhhhhhcccccccccccchHHHHHHhhhCC-HHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHh
Confidence 99997 77888888876544 9999999888888853 33 344577888999999999999999
Q ss_pred hcccceeEEEeeCCCCHHHHHHHHHHHHHhhh
Q 029084 155 LSRTFLECYIETLNLMKQDRLSSTLKMFSLRA 186 (199)
Q Consensus 155 ~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~ 186 (199)
+.+.++.+.|+| |++.+++.+++.++|+..+
T Consensus 230 Y~p~n~~l~v~G-d~d~~~~~~~i~~~f~~~~ 260 (995)
T 2fge_A 230 YHPSNARIWFYG-DDDPVHRLRVLSEYLDMFE 260 (995)
T ss_dssp SSGGGEEEEEEE-SSCHHHHHHHHHHHHTTCC
T ss_pred CCccceEEEEEc-CCCHHHHHHHHHHHHhhCC
Confidence 999999999999 9999999999999987655
No 22
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.45 E-value=2.4e-06 Score=71.79 Aligned_cols=161 Identities=8% Similarity=0.022 Sum_probs=106.3
Q ss_pred eeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhchhhh--hccEEEEeee------CCceEEEEeecCccHHHH
Q 029084 6 KAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHT------ESGFEVTVVGYNHKLRIL 76 (199)
Q Consensus 6 k~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~~--ag~~~~i~~~------~~gl~l~i~G~s~kl~~l 76 (199)
...+.+.+..+... ++ ......++..++... +...++.... .|+.|+++++ ...+.+.+..-.++...+
T Consensus 249 ~~~v~~~~~~~~~~-~~-d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~ 326 (434)
T 3gwb_A 249 QTSLMLAQLGIDRD-DP-DYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGT 326 (434)
T ss_dssp EEEEEEEEECCBTT-CT-THHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHH
T ss_pred ceeEEecCcCCCCC-Cc-chHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHH
Confidence 34455555544332 22 234555666665543 3333332221 2333333332 123556666666777888
Q ss_pred HHHHHHHhhcC---CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCC-HHHHHhhCCCCCHHHHHHHHH
Q 029084 77 LETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFVP 152 (199)
Q Consensus 77 l~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~~~l~~L~~it~ed~~~f~~ 152 (199)
++.+.+.+..+ .+++++|+++|..++.++...... |...+.......+....+. .++..+.++++|.+|++++.+
T Consensus 327 ~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 405 (434)
T 3gwb_A 327 LKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTAS-NADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMN 405 (434)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHH
Confidence 77777776654 589999999999999998877655 8888888777766665554 678899999999999999999
Q ss_pred HHhcccceeEEEeeCCCC
Q 029084 153 MMLSRTFLECYIETLNLM 170 (199)
Q Consensus 153 ~~~~~~~~~~li~G~Ni~ 170 (199)
+++.+....+.++| +-.
T Consensus 406 ~~l~~~~~~~~vvg-~~~ 422 (434)
T 3gwb_A 406 KHLNVDKMVIVSAG-PTV 422 (434)
T ss_dssp HHCCGGGCEEEEEE-CCC
T ss_pred HhcChhhEEEEEEc-Ccc
Confidence 99998899999999 743
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.40 E-value=1.4e-05 Score=66.88 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=107.9
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhh--hccEEEEeee-----CCc-eEEEEeecCccHHH
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV--AGLDYGINHT-----ESG-FEVTVVGYNHKLRI 75 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~--ag~~~~i~~~-----~~g-l~l~i~G~s~kl~~ 75 (199)
.+...+.+-+..+... ++ ......++..++...+...++.... .|+.|++++. ..| +.+.+..-.++...
T Consensus 232 ~~q~~v~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~ 309 (421)
T 3hdi_A 232 TEQAHLCLGYPGLPIG-DK-DVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDD 309 (421)
T ss_dssp CSEEEEEEEEECCCTT-CT-THHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHH
T ss_pred CCceEEEEEEecCCCC-Cc-hHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHH
Confidence 3455666666665432 33 3344556666665433333332221 2443333221 233 45555555567888
Q ss_pred HHHHHHHHhhcC---CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhc-cCCCCCHHHHHhhCCCCCHHHHHHHH
Q 029084 76 LLETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLIL-QDQTWPWMEELEVLPHLEAEDLAKFV 151 (199)
Q Consensus 76 ll~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll-~~~~~~~~~~l~~L~~it~ed~~~f~ 151 (199)
+++.+.+.+... .+++++++++|..++.++...... +...+.......+ .....+.++.++.++++|.+|++++.
T Consensus 310 ~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 388 (421)
T 3hdi_A 310 LVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLES-TNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA 388 (421)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 888777776554 699999999999999998766554 7677766654444 34456688999999999999999999
Q ss_pred HHHhcccceeEEEeeCCCC
Q 029084 152 PMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 152 ~~~~~~~~~~~li~G~Ni~ 170 (199)
++++ +....+.++| +.+
T Consensus 389 ~~~~-~~~~~~~vvg-p~~ 405 (421)
T 3hdi_A 389 KILL-SASPSISLIN-ANG 405 (421)
T ss_dssp HHHT-TSCCEEEEEE-SSC
T ss_pred HHHc-ccCcEEEEEC-chh
Confidence 9999 8888999999 864
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.40 E-value=5.7e-06 Score=69.30 Aligned_cols=162 Identities=9% Similarity=-0.022 Sum_probs=109.3
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-hhhhhchhhh--hccEEEEeeeC------CceEEEEeecCccHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-LNEYAYYAQV--AGLDYGINHTE------SGFEVTVVGYNHKLRI 75 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~-l~e~~y~a~~--ag~~~~i~~~~------~gl~l~i~G~s~kl~~ 75 (199)
+...+.+.+..+.. .++ ......++..++... +...++.... .|+.|+++++. ..+.+.+..-.++...
T Consensus 241 ~~~~v~~~~~~~~~-~~~-~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 241 TQAHIAIGMPTLKR-GDP-DFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp SEEEEEEEEEEEBT-TCT-THHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred CccEEEeeccCCCC-CCc-chHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 34444454444332 222 334556666666554 4444443332 35555554421 2356666655667887
Q ss_pred HHHHHHHHhh---cCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCC-HHHHHhhCCCCCHHHHHHHH
Q 029084 76 LLETIFQKIA---QFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWP-WMEELEVLPHLEAEDLAKFV 151 (199)
Q Consensus 76 ll~~i~~~l~---~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~-~~~~l~~L~~it~ed~~~f~ 151 (199)
+++.+.+.+. +..+++++|+++|+.++.++...... |...+..+....+....+. .++..+.++++|.+|++++.
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a 397 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDS-NAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAF 397 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSS-HHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCC-HHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777665 44689999999999999998876554 8888887776666654444 56778899999999999999
Q ss_pred HHHhcccceeEEEeeCCCC
Q 029084 152 PMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 152 ~~~~~~~~~~~li~G~Ni~ 170 (199)
++++.+....++++| +-.
T Consensus 398 ~~~l~~~~~~~~~~~-~~~ 415 (424)
T 3amj_B 398 ARHVKRENLITVVVG-GKA 415 (424)
T ss_dssp HHHCCGGGCEEEEEE-CC-
T ss_pred HHhcCccceEEEEEC-Chh
Confidence 999998888999999 653
No 25
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.40 E-value=6.9e-06 Score=68.64 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=111.5
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhh-hccEEEEeeeC-----Cc-eEEEEeecCccHHHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV-AGLDYGINHTE-----SG-FEVTVVGYNHKLRILL 77 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~-ag~~~~i~~~~-----~g-l~l~i~G~s~kl~~ll 77 (199)
+...+.+-+..|... ++ ......++..++.......++.... .|+.|++++.. .| +.+.+..-.++...++
T Consensus 234 ~q~~~~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (406)
T 3eoq_A 234 RALYLVALFPGVAYQ-EE-ARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVL 311 (406)
T ss_dssp SSEEEEEEEECCCTT-CT-THHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHH
T ss_pred cceEEEEEecCCCCC-Cc-hHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHH
Confidence 445566666665432 33 2345566666665433322221111 45656554431 23 5566666667888888
Q ss_pred HHHHHHhhcC---CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHH
Q 029084 78 ETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPM 153 (199)
Q Consensus 78 ~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~~it~ed~~~f~~~ 153 (199)
+.+.+.+... .+++++++++|.++..++...... |...+.......+. ....+.++.++.++++|.+|+++..++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 390 (406)
T 3eoq_A 312 AVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET-PMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLER 390 (406)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 8887777655 599999999999999999876544 77888887766665 445668899999999999999999999
Q ss_pred HhcccceeEEEeeCCCC
Q 029084 154 MLSRTFLECYIETLNLM 170 (199)
Q Consensus 154 ~~~~~~~~~li~G~Ni~ 170 (199)
++.+... +.++| +..
T Consensus 391 ~l~~~~~-~~vvG-p~~ 405 (406)
T 3eoq_A 391 GFLEKGL-YYLVL-PHG 405 (406)
T ss_dssp TTTTSCE-EEEEE-CCC
T ss_pred hcCcccE-EEEEC-CCC
Confidence 9988888 99999 753
No 26
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.37 E-value=2.1e-05 Score=66.04 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=106.0
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--------hhhhhchhh--hhccEEEEeee-----CCc-eEEEEee
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY--------LNEYAYYAQ--VAGLDYGINHT-----ESG-FEVTVVG 68 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~--------l~e~~y~a~--~ag~~~~i~~~-----~~g-l~l~i~G 68 (199)
+...+.+.+..|.. .++ ......++..++... +...++... ..|+.|+++++ ..| +.+.+..
T Consensus 251 ~~~~v~~~~~~~~~-~~~-~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~ 328 (439)
T 1pp9_B 251 SLVHAALVAESAAI-GSA-EANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS 328 (439)
T ss_dssp SEEEEEEEEECCCT-TSH-HHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred cceEEEEEecCCCC-Cch-HHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe
Confidence 44556666665543 233 445556666666321 122222211 12333333322 224 4555655
Q ss_pred cCccHHHHHHHHHHHhhc---CCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCH
Q 029084 69 YNHKLRILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEA 144 (199)
Q Consensus 69 ~s~kl~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~~it~ 144 (199)
=.++....++.+.+.+.. ..+++++|+.+|..+..++...... |...+.......+. ......++..+.++++|.
T Consensus 329 ~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (439)
T 1pp9_B 329 QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVES-SEGFLDEVGSQALAAGSYTPPSTVLQQIDAVAD 407 (439)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCH
Confidence 556788888877776654 5699999999999999998876544 87888777666654 444457889999999999
Q ss_pred HHHHHHHHHHhcccceeEEEeeCCC
Q 029084 145 EDLAKFVPMMLSRTFLECYIETLNL 169 (199)
Q Consensus 145 ed~~~f~~~~~~~~~~~~li~G~Ni 169 (199)
+|++++.++++. ....+.++| +.
T Consensus 408 ~dv~~~a~~~~~-~~~~~~v~g-~~ 430 (439)
T 1pp9_B 408 ADVINAAKKFVS-GRKSMAASG-NL 430 (439)
T ss_dssp HHHHHHHHHHHH-SCEEEEEEE-CG
T ss_pred HHHHHHHHHHhc-CCceEEEEC-Cc
Confidence 999999999998 678888999 74
No 27
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.34 E-value=1.2e-05 Score=67.33 Aligned_cols=107 Identities=9% Similarity=0.093 Sum_probs=83.1
Q ss_pred eEEEEeecC-ccHHHHHHHHHHHhhcC--CcChhHHHHHHHHHHHHhhh--hccCCcHHHHHHHHHHhc-cCCCCCHHHH
Q 029084 62 FEVTVVGYN-HKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHN--NKFLQPFQLAMYYCSLIL-QDQTWPWMEE 135 (199)
Q Consensus 62 l~l~i~G~s-~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n--~~~~~p~~~a~~~~~~ll-~~~~~~~~~~ 135 (199)
+.+.+..-. ++...+++.+.+.+... .+++++|+++|..+..++.. ... .|...+.......+ .......++.
T Consensus 302 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 380 (431)
T 3cx5_A 302 WGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESG-NPVNDANLLGAEVLIKGSKLSLGEA 380 (431)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCS-CHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455655555 67777777666655443 79999999999999999988 544 48888887766543 4444557888
Q ss_pred HhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCC
Q 029084 136 LEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 136 l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
.+.++++|.+|++++.++++.+....+.++| +..
T Consensus 381 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g-~~~ 414 (431)
T 3cx5_A 381 FKKIDAITVKDVKAWAGKRLWDQDIAIAGTG-QIE 414 (431)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTTCCCEEEEEE-SCT
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCcEEEEEc-chh
Confidence 9999999999999999999987778889999 765
No 28
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.31 E-value=4e-05 Score=64.53 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=84.1
Q ss_pred eEEEEeec--CccHHHHHHHHHHHh---hcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHh-ccCCCCCHHHH
Q 029084 62 FEVTVVGY--NHKLRILLETIFQKI---AQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEE 135 (199)
Q Consensus 62 l~l~i~G~--s~kl~~ll~~i~~~l---~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~~~ 135 (199)
+.+.+..- .++...+++.+.+.+ .+..+++++++++|..++.++...... |...+....... ......+..+.
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 395 (443)
T 1hr6_B 317 WGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDG-STAIVEDIGRQVVTTGKRLSPEEV 395 (443)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred EEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcCCHHHH
Confidence 44555544 568888888777666 445699999999999999999877554 777777666654 45555667888
Q ss_pred HhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCC
Q 029084 136 LEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 136 l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
.+.++++|.+|++++.++++.+....+.++| +..
T Consensus 396 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g-~~~ 429 (443)
T 1hr6_B 396 FEQVDKITKDDIIMWANYRLQNKPVSMVALG-NTS 429 (443)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSSCCEEEEEEE-CGG
T ss_pred HHHHHhCCHHHHHHHHHHHhccCCcEEEEEC-Ccc
Confidence 9999999999999999999988888889999 854
No 29
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.29 E-value=2.1e-05 Score=67.27 Aligned_cols=161 Identities=13% Similarity=0.100 Sum_probs=108.6
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-----------hhhhhchhh--hhccEEEEeee-----CCc-eEEE
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDY-----------LNEYAYYAQ--VAGLDYGINHT-----ESG-FEVT 65 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~-----------l~e~~y~a~--~ag~~~~i~~~-----~~g-l~l~ 65 (199)
+...+.+-+..+.. .++ ......++..++... +...++... ..|+.|++.+. ..| +.+.
T Consensus 242 ~~~~v~~~~~~~~~-~~~-d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~ 319 (475)
T 1hr6_A 242 ELFHIQIGFEGLPI-DHP-DIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319 (475)
T ss_dssp CCEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEE
T ss_pred cceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEE
Confidence 44556666664443 233 233445566665421 223333222 12555555432 223 5666
Q ss_pred EeecCccHHHHHHHHHHHhhcC------CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHh-ccCCCCCHHHHHhh
Q 029084 66 VVGYNHKLRILLETIFQKIAQF------KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 138 (199)
Q Consensus 66 i~G~s~kl~~ll~~i~~~l~~~------~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~~~l~~ 138 (199)
+..-.++....++.+.+.+... .+++++|+++|.++..++...... |...+..+...+ ......+.++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (475)
T 1hr6_A 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLES-KLVELEDMGRQVLMHGRKIPVNEMISK 398 (475)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 6666678888888888877653 389999999999999999875444 777777766654 34555668889999
Q ss_pred CCCCCHHHHHHHHHHHhcc---------cceeEEEeeCCC
Q 029084 139 LPHLEAEDLAKFVPMMLSR---------TFLECYIETLNL 169 (199)
Q Consensus 139 L~~it~ed~~~f~~~~~~~---------~~~~~li~G~Ni 169 (199)
++++|.+|++++.++++.+ ....+.++| +.
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g-~~ 437 (475)
T 1hr6_A 399 IEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQG-DR 437 (475)
T ss_dssp HHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEES-CG
T ss_pred HHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEEC-Cc
Confidence 9999999999999999976 478889999 86
No 30
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.28 E-value=3.6e-05 Score=65.04 Aligned_cols=161 Identities=12% Similarity=0.069 Sum_probs=109.0
Q ss_pred eEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHhhhhhhchhh--hhccEEEEeee------C-Cc-eEEEEeecCc-cH
Q 029084 7 AFVKIYFNCPHA--SSSPESEVLTDIFTRLLLDYLNEYAYYAQ--VAGLDYGINHT------E-SG-FEVTVVGYNH-KL 73 (199)
Q Consensus 7 ~~i~~~i~~p~~--~~~~~~~~l~~l~~~ll~~~l~e~~y~a~--~ag~~~~i~~~------~-~g-l~l~i~G~s~-kl 73 (199)
..+.+.+..|.. ..+........++..++.......++... ..|+.|+++++ . .| +.+.+.+-.+ +.
T Consensus 245 ~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~ 324 (445)
T 3ami_A 245 PYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTI 324 (445)
T ss_dssp CEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCH
T ss_pred cEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCH
Confidence 345555555551 22133455667777777754444333321 34666665542 1 23 4555555555 37
Q ss_pred HHHHHHHHHHhhc---CCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCC-CHHHHHhhCCCCCHHHHHH
Q 029084 74 RILLETIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTW-PWMEELEVLPHLEAEDLAK 149 (199)
Q Consensus 74 ~~ll~~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~-~~~~~l~~L~~it~ed~~~ 149 (199)
..+++.+.+.|.. -.+++++++++|+.+..++...... |...+..+....+....+ ...+..+.++++|.+|+++
T Consensus 325 ~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 403 (445)
T 3ami_A 325 AQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDS-LMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKA 403 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHH
Confidence 7777776666654 4689999999999999999877654 778888877777765433 4677889999999999999
Q ss_pred HHHHHhcccceeEEEeeCCC
Q 029084 150 FVPMMLSRTFLECYIETLNL 169 (199)
Q Consensus 150 f~~~~~~~~~~~~li~G~Ni 169 (199)
+.++++.+....+.++| .-
T Consensus 404 ~a~~~l~~~~~~~~~~~-p~ 422 (445)
T 3ami_A 404 AAARLLTDDTLTVANLV-PL 422 (445)
T ss_dssp HHHTTSCSTTEEEEEEE-EE
T ss_pred HHHHHcCcCCeEEEEEc-cC
Confidence 99999988888888888 53
No 31
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.23 E-value=8.9e-05 Score=61.75 Aligned_cols=158 Identities=9% Similarity=0.030 Sum_probs=100.4
Q ss_pred ceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhhhhhchhhh--hccEEEEeee---CCc-eEEEEeecCccHHHHHH
Q 029084 5 PKAFVKIYFNCPHASSSPESEVLTDIFTRLLLDYLNEYAYYAQV--AGLDYGINHT---ESG-FEVTVVGYNHKLRILLE 78 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~--ag~~~~i~~~---~~g-l~l~i~G~s~kl~~ll~ 78 (199)
+...+.+.+..|....++ ......++..++.......++.... .|+.|+++++ ..| +.+.+..-.++...+++
T Consensus 253 ~~~~v~~~~~~~~~~~~~-~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~ 331 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGDS-YYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLR 331 (425)
T ss_dssp SSEEEEEEEECCCCTTST-THHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHH
T ss_pred cccEEEEEeecCCCCCCc-hHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHH
Confidence 444555555554322222 3455566666663222222222211 2444444332 234 44555444567887777
Q ss_pred HHHHHhhc---CCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 029084 79 TIFQKIAQ---FKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLPHLEAEDLAKFVPMM 154 (199)
Q Consensus 79 ~i~~~l~~---~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~~it~ed~~~f~~~~ 154 (199)
.+.+.+.. -.+++++|+.+|..++.++...... |...+.......+. .......+..+.++++|.+|++++.+++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~ 410 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALDN-AGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRL 410 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccC-HHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhc
Confidence 77666654 4689999999999999998877554 88888877777766 4445678899999999999999999998
Q ss_pred hcccceeEEEee
Q 029084 155 LSRTFLECYIET 166 (199)
Q Consensus 155 ~~~~~~~~li~G 166 (199)
+.. . ...+.|
T Consensus 411 ~~~-~-~~~v~g 420 (425)
T 3d3y_A 411 ELQ-A-IFFLEG 420 (425)
T ss_dssp EEE-E-EEEEEE
T ss_pred cCc-e-EEEEeC
Confidence 644 3 335555
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.18 E-value=5.7e-05 Score=63.80 Aligned_cols=108 Identities=5% Similarity=-0.064 Sum_probs=85.3
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcC--CcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHh-ccCCCCCHHHHHhh
Q 029084 62 FEVTVVGYNHKLRILLETIFQKIAQF--KVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLI-LQDQTWPWMEELEV 138 (199)
Q Consensus 62 l~l~i~G~s~kl~~ll~~i~~~l~~~--~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~l-l~~~~~~~~~~l~~ 138 (199)
+.+.+..-.++...+++.+.+.+... .+++++++++|..+..++...... |...+..+.... +.....+.++.++.
T Consensus 320 ~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 398 (446)
T 1pp9_A 320 LGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDG-TTPVCEDIGRSLLTYGRRIPLAEWESR 398 (446)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCS-HHHHHHHHHHHHHHTSSCCCHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55666555568888888877766443 499999999999999999876544 877787766554 45555678888999
Q ss_pred CCCCCHHHHHHHHHHHhcccceeEEEeeCCCCH
Q 029084 139 LPHLEAEDLAKFVPMMLSRTFLECYIETLNLMK 171 (199)
Q Consensus 139 L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~ 171 (199)
++++|.+|++++.++++.+....+.++| +...
T Consensus 399 i~~vt~edv~~~a~~~~~~~~~~~~~~g-~~~~ 430 (446)
T 1pp9_A 399 IAEVDARVVREVCSKYFYDQCPAVAGFG-PIEQ 430 (446)
T ss_dssp HHTCCHHHHHHHHHHHTTTCCCEEEEEE-SCTT
T ss_pred HHcCCHHHHHHHHHHHcCCCCcEEEEEC-Cccc
Confidence 9999999999999999988788889999 8653
No 33
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.86 E-value=0.00066 Score=58.43 Aligned_cols=162 Identities=9% Similarity=0.030 Sum_probs=101.4
Q ss_pred ceeEEEEEEeCCCCC-CCH---HHHHHHHHHHHHHHHhhhhhhchhhhhccEEEEeeeC----CceEEEEeecCccHHHH
Q 029084 5 PKAFVKIYFNCPHAS-SSP---ESEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINHTE----SGFEVTVVGYNHKLRIL 76 (199)
Q Consensus 5 Pk~~i~~~i~~p~~~-~~~---~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~~~----~gl~l~i~G~s~kl~~l 76 (199)
+...+.+-+..|... .+. +......+...++...|...+-.....|+.+++++.. ....+.+++-.++...+
T Consensus 265 ~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a 344 (492)
T 3go9_A 265 AQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTAN 344 (492)
T ss_dssp SSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHH
T ss_pred CCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHH
Confidence 344455555554332 222 1222334555555544443222223457777666532 23456677777888888
Q ss_pred HHHHHHHhhcC---CcChhHHHHHHHHHHHHhhhhc----cCCcHHHHHHHHHHhccCCCC-CHHH---HH-hhCCCCCH
Q 029084 77 LETIFQKIAQF---KVKPDRFSVIKEMVTKEYHNNK----FLQPFQLAMYYCSLILQDQTW-PWME---EL-EVLPHLEA 144 (199)
Q Consensus 77 l~~i~~~l~~~---~~~~~~F~~~k~~~~~~~~n~~----~~~p~~~a~~~~~~ll~~~~~-~~~~---~l-~~L~~it~ 144 (199)
++.+.+.+..+ .+++++++++|..++.++.... .+.+..+|..+...++....+ ++++ .. +.++++|.
T Consensus 345 ~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 424 (492)
T 3go9_A 345 MTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTL 424 (492)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCH
Confidence 88888777654 6899999999999998876542 334667777777666654433 4554 33 45889999
Q ss_pred HHHHHHHHHHhcccceeEEEee
Q 029084 145 EDLAKFVPMMLSRTFLECYIET 166 (199)
Q Consensus 145 ed~~~f~~~~~~~~~~~~li~G 166 (199)
+|++++.++++++...-++|.|
T Consensus 425 edV~~~a~~~l~~~~~~vvvg~ 446 (492)
T 3go9_A 425 AELNRELKQQLSQDTTLVLMQP 446 (492)
T ss_dssp HHHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEcC
Confidence 9999999999987655444444
No 34
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.86 E-value=4.8e-05 Score=72.23 Aligned_cols=179 Identities=12% Similarity=0.176 Sum_probs=127.7
Q ss_pred CceeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hhhhhhc-------hhhhhccEEEEeee--------------CCc
Q 029084 4 TPKAFVKIYFNCPHASSSPESEVLTDIFTRLLLD-YLNEYAY-------YAQVAGLDYGINHT--------------ESG 61 (199)
Q Consensus 4 ~Pk~~i~~~i~~p~~~~~~~~~~l~~l~~~ll~~-~l~e~~y-------~a~~ag~~~~i~~~--------------~~g 61 (199)
.+.+++++.|..+.. +.....+..|++.++.+ ......| ....+|++++.+.. ...
T Consensus 737 NGIvY~~l~fdl~~l--~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~ 814 (1193)
T 3s5m_A 737 TGIVYLQFVFSLDHL--TVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQAL 814 (1193)
T ss_dssp TTEEEEEEEEECTTC--CHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEE
T ss_pred CCeEEEEEEEECCCC--CHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccce
Confidence 366777888877653 47778889999998854 3322222 34457777777542 123
Q ss_pred eEEEEeecCccHHHHHHHHHHHhhcCCcCh-hHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCC------CC---
Q 029084 62 FEVTVVGYNHKLRILLETIFQKIAQFKVKP-DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQT------WP--- 131 (199)
Q Consensus 62 l~l~i~G~s~kl~~ll~~i~~~l~~~~~~~-~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~------~~--- 131 (199)
+.++....+++++.+++.+.+.|.++.|++ +++..+..+...++++...+..+..|...+...+.... ..
T Consensus 815 ~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~ 894 (1193)
T 3s5m_A 815 FNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYEN 894 (1193)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHH
T ss_pred EEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHH
Confidence 788999999999999999999999999986 47999999999999998877677777776655543211 01
Q ss_pred ---HHHHHhh----CCCCCHHHHHHHHHHHhcccceeEEEeeCCCC-HHHHHHHHHHHHHhhh
Q 029084 132 ---WMEELEV----LPHLEAEDLAKFVPMMLSRTFLECYIETLNLM-KQDRLSSTLKMFSLRA 186 (199)
Q Consensus 132 ---~~~~l~~----L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~-~~~a~~~~~~~~~~~~ 186 (199)
..++++. .+.+ .+++.++++.++++.++.+.+.| +.+ .+++...+.+.++.++
T Consensus 895 ~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg-~~~~~~~~~~~l~~~l~~l~ 955 (1193)
T 3s5m_A 895 YLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTS-DYGALKHLFVNSNESLKNLV 955 (1193)
T ss_dssp HHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEE-CGGGTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEe-ChhhHHHHHHHHHHHHHhhh
Confidence 1111111 1223 67899999999999999999999 886 4677777766666655
No 35
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=57.20 E-value=6.6 Score=31.43 Aligned_cols=63 Identities=5% Similarity=-0.140 Sum_probs=47.5
Q ss_pred CHHHHHhhC---------CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 131 PWMEELEVL---------PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 131 ~~~~~l~~L---------~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.+|..+++ .+.+.+++.+.++.. ..++.+.+.| +|+.+.+.++...-. +.+...+..|.+++
T Consensus 218 tlde~~eAl~aGaD~I~LDn~~~~~l~~av~~i--~~~v~ieaSG-GI~~~~i~~~a~tGV-D~isvG~lt~sa~~ 289 (298)
T 3gnn_A 218 TLDQLRTALAHGARSVLLDNFTLDMMRDAVRVT--EGRAVLEVSG-GVNFDTVRAIAETGV-DRISIGALTKDVRA 289 (298)
T ss_dssp SHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH--TTSEEEEEES-SCSTTTHHHHHHTTC-SEEECGGGGTSCCC
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh--CCCCeEEEEc-CCCHHHHHHHHHcCC-CEEEECCeecCCCc
Confidence 456655554 468899999888866 4578899999 999999999987655 66666666666654
No 36
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=54.31 E-value=9.2 Score=30.61 Aligned_cols=63 Identities=8% Similarity=-0.064 Sum_probs=46.4
Q ss_pred CHHHHHhhC---------CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 131 PWMEELEVL---------PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 131 ~~~~~l~~L---------~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.+|..+++ ++.+.+++++.++..- .++.+.+.| ||+.+.+.++...-. +.+...+..|.++|
T Consensus 216 tl~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~--~~v~leaSG-GIt~~~i~~~A~tGV-D~IsvGalthsa~~ 287 (300)
T 3l0g_A 216 NISQVEESLSNNVDMILLDNMSISEIKKAVDIVN--GKSVLEVSG-CVNIRNVRNIALTGV-DYISIGCITNSFQN 287 (300)
T ss_dssp SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT--TSSEEEEES-SCCTTTHHHHHTTTC-SEEECGGGTSSCCC
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc--CceEEEEEC-CCCHHHHHHHHHcCC-CEEEeCccccCCCc
Confidence 456666663 4788999998887553 368888999 999999999887655 66666666665554
No 37
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=40.79 E-value=83 Score=21.33 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=52.7
Q ss_pred EeecCccHHHHHHHHHHHhhcCCc--ChhHHHHHHHHHHHHhhhhccCCcHHHHHHH--HHHhccCC--CCCHHH--HHh
Q 029084 66 VVGYNHKLRILLETIFQKIAQFKV--KPDRFSVIKEMVTKEYHNNKFLQPFQLAMYY--CSLILQDQ--TWPWME--ELE 137 (199)
Q Consensus 66 i~G~s~kl~~ll~~i~~~l~~~~~--~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~--~~~ll~~~--~~~~~~--~l~ 137 (199)
.+|=+|.-.+++..|-+.+.+.+- ..+.+..+...+..++++.....|+-+...- +..++.++ ..+.++ +++
T Consensus 27 FsGGkER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~~~tSvPfILSRMNldIS~vL~~n~I~LS~~qs~~LK 106 (118)
T 2zrr_A 27 FSGGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRMNIEISNAIKKDGVSLNENQSKKLK 106 (118)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcCCCCchhHHHHhhHHHHHHHHHCCcccCHHHHHHHH
Confidence 467778888888888888877763 4677888888899999999888898888774 35566554 344443 455
Q ss_pred hCCCC
Q 029084 138 VLPHL 142 (199)
Q Consensus 138 ~L~~i 142 (199)
.|.++
T Consensus 107 ~Lr~L 111 (118)
T 2zrr_A 107 ELMSI 111 (118)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 44433
No 38
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=38.46 E-value=57 Score=25.50 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhhhccEEEEee-eCCce-EEEEeecCccHHHHHHHHHHHhhcCCcChhHHHHHHHHH
Q 029084 24 SEVLTDIFTRLLLDYLNEYAYYAQVAGLDYGINH-TESGF-EVTVVGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMV 101 (199)
Q Consensus 24 ~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~i~~-~~~gl-~l~i~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~ 101 (199)
......++..++...+++..- .+ ....... ...|+ .+.+. .++...+.+.+.+.+.+. +++++++++|..+
T Consensus 233 ~~~~l~vl~~iLg~~lre~~g---l~-~~~~~~~~~~~g~~~i~~~--~~~~~~~~~~i~~~l~~~-~t~~el~~ak~~~ 305 (352)
T 3cx5_B 233 SLAQYEVLANYLTSALSELSG---LI-SSAKLDKFTDGGLFTLFVR--DQDSAVVSSNIKKIVADL-KKGKDLSPAINYT 305 (352)
T ss_dssp THHHHHHHHHHHHSTTSTTGG---GC-SEEEEEEETTEEEEEEEEE--ESCHHHHHHHHHHHHHHH-HSCEECGGGHHHH
T ss_pred hHHHHHHHHHHhCcchhcccC---ce-EEEeecCcCcceeEEEEEE--eCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 345566677777665554321 11 1222222 23343 34444 334555555555555443 7899999999999
Q ss_pred HHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhCCCCCHHHHHHHHHHHhcccceeEEEeeCCCC
Q 029084 102 TKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVLPHLEAEDLAKFVPMMLSRTFLECYIETLNLM 170 (199)
Q Consensus 102 ~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~ 170 (199)
..++...... + ....+. .++++|.++ + ..+.+.++| +++
T Consensus 306 ~~~~~~~~~~-~-------------~~~~~~-----~i~~vt~~~--------~--~~~~~~~~G-~~~ 344 (352)
T 3cx5_B 306 KLKNAVQNES-V-------------SSPIEL-----NFDAVKDFK--------L--GKFNYVAVG-DVS 344 (352)
T ss_dssp HHHHHHHCCS-T-------------TCCCCS-----CGGGCCEEC--------C--CSCEEEEEE-SGG
T ss_pred HHHHHhhhhc-c-------------CCccce-----eeeeeeHhh--------c--CCceEEEEc-ccc
Confidence 9998866543 2 111122 355555222 3 678899999 876
No 39
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.22 E-value=24 Score=27.91 Aligned_cols=65 Identities=12% Similarity=-0.096 Sum_probs=45.4
Q ss_pred CHHHHHhhCC---------CCCHHHHHHHHHHHhc-ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCCCC
Q 029084 131 PWMEELEVLP---------HLEAEDLAKFVPMMLS-RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCSHP 197 (199)
Q Consensus 131 ~~~~~l~~L~---------~it~ed~~~f~~~~~~-~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 197 (199)
+.++..++++ ..+.+++++.++..-. ..++.+.+.| +|+.+.+.++...-. +.+..++..+.++|
T Consensus 203 t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~~~~~v~ieaSG-GIt~~~i~~~a~tGV-D~isvG~l~~~a~~ 277 (284)
T 1qpo_A 203 SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSG-GLSLQTAATYAETGV-DYLAVGALTHSVRV 277 (284)
T ss_dssp SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHHHCTTCEEEEES-SCCTTTHHHHHHTTC-SEEECGGGTSSBCC
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEEC-CCCHHHHHHHHhcCC-CEEEECHHHcCCCC
Confidence 4566555554 6788888888876543 2368889999 999999999887654 55555665555543
No 40
>1eoq_A GAG polyprotein capsid protein P27; virus/viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.28.3.1
Probab=31.55 E-value=1.1e+02 Score=19.95 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhccCCCCCHHHHHhhC--CCCCHHHHHHHHHHHh
Q 029084 92 DRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQDQTWPWMEELEVL--PHLEAEDLAKFVPMML 155 (199)
Q Consensus 92 ~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~~~~~~~~~~l~~L--~~it~ed~~~f~~~~~ 155 (199)
+-|+.+.+++...++..... +..-+-.....+.++.+..-...+.++ ...|++++..|+..=.
T Consensus 9 EPFrDyVdRf~kalraeqa~-~~vK~wmt~tLlvQNANPdCk~iLkal~g~~~tl~em~~yi~~~~ 73 (96)
T 1eoq_A 9 ESFVDFANRLIKAVEGSDLP-PSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ 73 (96)
T ss_dssp CCHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHSCHHHHHHHHHCCSCCCSHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHhhcc-HhHhhhhHHHHHHHhcCHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 44666666666666554433 222222222333333333344577788 3578999999987644
No 41
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=31.16 E-value=1.1e+02 Score=22.37 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhh----hhhchhhhhccEE--EEeeeCCceEEE-EeecCc
Q 029084 20 SSPESEVLTDIFTRLLLDYLN----EYAYYAQVAGLDY--GINHTESGFEVT-VVGYNH 71 (199)
Q Consensus 20 ~~~~~~~l~~l~~~ll~~~l~----e~~y~a~~ag~~~--~i~~~~~gl~l~-i~G~s~ 71 (199)
++.+...+...++.+++..+. -+.|.-++.|..| ......+.+.|+ .-|||+
T Consensus 55 ~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~~g~~l~l~N~LG~sh 113 (178)
T 1vq8_E 55 DNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKA 113 (178)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSS
T ss_pred CCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEEcCCEEEEEccccccc
Confidence 467778888888888887653 3455555555555 444444444443 345553
No 42
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=31.08 E-value=22 Score=17.94 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.0
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHH
Q 029084 131 PWMEELEVLPHLEAEDLAKFVPMM 154 (199)
Q Consensus 131 ~~~~~l~~L~~it~ed~~~f~~~~ 154 (199)
+.++.++++.+.|+-++.++++.+
T Consensus 2 ~~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 2 TIDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHH
Confidence 356778888888888887777654
No 43
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=30.34 E-value=72 Score=20.23 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=29.2
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIFQ 82 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~~ 82 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..+++.+-+
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 24 EADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 46667786667666778 999999998888777776644
No 44
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=29.10 E-value=74 Score=20.06 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=29.1
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..+++.+.
T Consensus 24 ~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 24 KALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 46666776667666778 99999999988888887775
No 45
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=28.99 E-value=22 Score=28.64 Aligned_cols=52 Identities=6% Similarity=-0.150 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCC
Q 029084 140 PHLEAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCS 195 (199)
Q Consensus 140 ~~it~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (199)
.+.+.+++.+.++..- .++.+.+.| +|+.+.+.++...-. +.+...+..|.+
T Consensus 258 Dn~~~~~l~~av~~l~--~~v~ieaSG-GIt~~~I~~~a~tGV-D~isvGalt~sa 309 (320)
T 3paj_A 258 DNFSLEMMREAVKINA--GRAALENSG-NITLDNLKECAETGV-DYISVGALTKHL 309 (320)
T ss_dssp ESCCHHHHHHHHHHHT--TSSEEEEES-SCCHHHHHHHHTTTC-SEEECTHHHHSB
T ss_pred CCCCHHHHHHHHHHhC--CCCeEEEEC-CCCHHHHHHHHHcCC-CEEEECceecCC
Confidence 3678899988887532 478899999 999999998876533 444444433333
No 46
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=26.46 E-value=53 Score=17.72 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhcccce
Q 029084 132 WMEELEVLPHLEAEDLAKFVPMMLSRTFL 160 (199)
Q Consensus 132 ~~~~l~~L~~it~ed~~~f~~~~~~~~~~ 160 (199)
.++.++.+.++|+-++.++++.+-....+
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~leekfGV 31 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKKLEDKFGV 31 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHCC
Confidence 46788888999998888888776655443
No 47
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=26.16 E-value=1.9e+02 Score=21.13 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=73.1
Q ss_pred eecCccHHHHHHHHHHHhhcCCcChhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHhcc-CCCCCHHHHHhhCC---CC
Q 029084 67 VGYNHKLRILLETIFQKIAQFKVKPDRFSVIKEMVTKEYHNNKFLQPFQLAMYYCSLILQ-DQTWPWMEELEVLP---HL 142 (199)
Q Consensus 67 ~G~s~kl~~ll~~i~~~l~~~~~~~~~F~~~k~~~~~~~~n~~~~~p~~~a~~~~~~ll~-~~~~~~~~~l~~L~---~i 142 (199)
.|++++...++..++..+..-.... |..+.+.+-+.....+.+ ....+..+.. ...++..+..++.- .+
T Consensus 45 ~~~dk~~g~LLy~latk~k~~~~~~------r~~l~~~I~~gklkt~~Q-v~AAl~yl~~~~~~id~~~Fe~~cGVGV~V 117 (187)
T 3tl4_X 45 YQWNKSTRALVHNLASFVKGTDLPK------SELIVNGIINGDLKTSLQ-VDAAFKYVKANGEASTKMGMNENSGVGIEI 117 (187)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCCTT------HHHHHHHHHTTSCCSHHH-HHHHHHHHHHHGGGCCHHHHHHTTTTTCCC
T ss_pred CCCCHHHHHHHHHHHHhccCccchh------HHHHHHHHHhccCCcHHH-HHHHHHHHHhCCCCCCHHHHHHHCCCCeEe
Confidence 4678889999999999886533332 566777777777664433 2333322222 45677777766663 79
Q ss_pred CHHHHHHHHHHHhcccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCC
Q 029084 143 EAEDLAKFVPMMLSRTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHC 194 (199)
Q Consensus 143 t~ed~~~f~~~~~~~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (199)
|.||+.+-++.++....-+++-.+ +. ..-.++.... ..|...|+.+.
T Consensus 118 T~EqI~~~V~~~i~~~k~~i~~~R--Y~--~~g~ll~~vr-~~p~LkWAd~~ 164 (187)
T 3tl4_X 118 TEDQVRNYVMQYIQENKERILTER--YK--LVPGIFADVK-NLKELKWADPR 164 (187)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHG--GG--GHHHHHHHHH-TCGGGTTSCTT
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhc--cc--cHHHHHHHHh-cccCCCCCCHH
Confidence 999999999999866554444333 22 3334555553 45667777654
No 48
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=25.90 E-value=92 Score=20.23 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=28.1
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..|++.+-
T Consensus 33 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 33 EAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46667776667666778 99999999888877776664
No 49
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=25.58 E-value=90 Score=20.31 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=28.5
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..|+..+-
T Consensus 36 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 36 HAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 46667887667666778 99999999888877777664
No 50
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=24.96 E-value=94 Score=20.04 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=28.2
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETIF 81 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i~ 81 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..|++.+.
T Consensus 30 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 30 EGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 46667776667666778 99999999888877776664
No 51
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=24.16 E-value=80 Score=20.06 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=27.4
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i 80 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..+++.+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l 62 (91)
T 1w2i_A 26 EARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWA 62 (91)
T ss_dssp HHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHT
T ss_pred HHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHH
Confidence 46666776667666778 9999999988887776655
No 52
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=24.04 E-value=82 Score=20.58 Aligned_cols=38 Identities=3% Similarity=-0.077 Sum_probs=29.4
Q ss_pred ccceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCC
Q 029084 157 RTFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCS 195 (199)
Q Consensus 157 ~~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (199)
-.++++-+.| .++.++-+++...+.+.+-...++++.+
T Consensus 57 ~a~v~i~~ig-~~~~e~~~~l~~~i~~~l~~~Lgi~~~r 94 (114)
T 4dh4_A 57 CAFIRVASIG-GITSSTNCKIAAALSAACERHLGVPKNR 94 (114)
T ss_dssp CEEEEEEEES-CCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred eEEEEEEEEc-CCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3488999999 9999888888888876666666666643
No 53
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.33 E-value=56 Score=21.72 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.7
Q ss_pred EEeeCCCCHHHHHHHHHH
Q 029084 163 YIETLNLMKQDRLSSTLK 180 (199)
Q Consensus 163 li~G~Ni~~~~a~~~~~~ 180 (199)
-.+| +|++++|.+++..
T Consensus 18 WyhG-~isR~~Ae~lL~~ 34 (118)
T 2dlz_A 18 WFAG-NMERQQTDNLLKS 34 (118)
T ss_dssp TEEE-SCCHHHHHHHHHH
T ss_pred ceec-CCCHHHHHHHhcC
Confidence 3599 9999999999865
No 54
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=22.63 E-value=77 Score=20.16 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=27.2
Q ss_pred hhhhhccEEEEeeeCCc-eEEEEeecCccHHHHHHHH
Q 029084 45 YAQVAGLDYGINHTESG-FEVTVVGYNHKLRILLETI 80 (199)
Q Consensus 45 ~a~~ag~~~~i~~~~~g-l~l~i~G~s~kl~~ll~~i 80 (199)
.|...|+.=-+....+| +.+.+.|-.+.+..|++.+
T Consensus 26 ~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 26 EAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp HHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 45556775556666677 9999999998888777776
No 55
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.96 E-value=61 Score=21.48 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=14.8
Q ss_pred EEeeCCCCHHHHHHHHHH
Q 029084 163 YIETLNLMKQDRLSSTLK 180 (199)
Q Consensus 163 li~G~Ni~~~~a~~~~~~ 180 (199)
-.+| +|++++|.+++..
T Consensus 12 WyhG-~isR~eAe~lL~~ 28 (119)
T 2ysx_A 12 WNHG-NITRSKAEELLSR 28 (119)
T ss_dssp SEEE-SCCHHHHHHHHHH
T ss_pred cccC-CCCHHHHHHHHhh
Confidence 4599 9999999998865
No 56
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=21.55 E-value=47 Score=21.29 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=14.0
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|.+++.+
T Consensus 6 yhg-~isR~~Ae~lL~~ 21 (103)
T 1i3z_A 6 YHG-CLTKRECEALLLK 21 (103)
T ss_dssp EES-SCCHHHHHHHHHT
T ss_pred ccC-CCCHHHHHHHHhh
Confidence 489 9999999998864
No 57
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.72 E-value=89 Score=20.46 Aligned_cols=37 Identities=8% Similarity=-0.108 Sum_probs=27.8
Q ss_pred cceeEEEeeCCCCHHHHHHHHHHHHHhhhcccccCCCC
Q 029084 158 TFLECYIETLNLMKQDRLSSTLKMFSLRAQTQYANHCS 195 (199)
Q Consensus 158 ~~~~~li~G~Ni~~~~a~~~~~~~~~~~~~~~~~~~~~ 195 (199)
.++++-..| .++.++-+++...+.+-+-...++|++|
T Consensus 57 a~~~v~sig-~~~~~~n~~~s~~i~~~l~~~Lgi~~~r 93 (114)
T 3djh_A 57 ALCSLHSIG-KIGGAQNRSYSKLLCGLLAERLRISPDR 93 (114)
T ss_dssp EEEEEEESS-CCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEEcc-CCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 478888899 9999888888877776666666666553
No 58
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=20.43 E-value=51 Score=21.26 Aligned_cols=16 Identities=0% Similarity=0.082 Sum_probs=14.1
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|.+++.+
T Consensus 8 yhg-~isR~~Ae~lL~~ 23 (105)
T 1nrv_A 8 FHG-RISREESHRIIKQ 23 (105)
T ss_dssp BCT-TCCHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHh
Confidence 489 9999999999865
No 59
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=20.23 E-value=43 Score=21.32 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=13.9
Q ss_pred EeeCCCCHHHHHHHHHH
Q 029084 164 IETLNLMKQDRLSSTLK 180 (199)
Q Consensus 164 i~G~Ni~~~~a~~~~~~ 180 (199)
.+| +|++++|.+++..
T Consensus 6 yhg-~isR~~Ae~lL~~ 21 (96)
T 1jyr_A 6 FFG-KIPRAKAEEMLSK 21 (96)
T ss_dssp BCC-SCCHHHHHHHHHT
T ss_pred ecc-CCCHHHHHHHHhc
Confidence 489 9999999998865
Done!