BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029085
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana
GN=HAL3A PE=1 SV=1
Length = 209
Score = 353 bits (907), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 162/196 (82%), Positives = 180/196 (91%)
Query: 1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
M+VNT RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V
Sbjct: 11 MEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVT 70
Query: 61 FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWD
Sbjct: 71 LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWD 130
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
Y KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIY
Sbjct: 131 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIY 190
Query: 181 STVRLFAESRNQSGDG 196
STVRLF ES+ G
Sbjct: 191 STVRLFWESQAHQQTG 206
>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis
thaliana GN=HAL3B PE=2 SV=2
Length = 201
Score = 341 bits (875), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/190 (82%), Positives = 178/190 (93%)
Query: 1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
M+V+T RKPRILLAASGSVA+IKF NLCHCFSEWAEV+AVA+KSSL+F+D+ +LP++V
Sbjct: 3 MEVDTVTRKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVT 62
Query: 61 FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
YTDEDEW++WNKIGD VLHIELRRWAD+M+IAPLSANTL KIAGGLCDNLLTCIVRAWD
Sbjct: 63 LYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWD 122
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
Y+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LIPP+ K+LACGDYGNGAMAEPSLIY
Sbjct: 123 YSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIY 182
Query: 181 STVRLFAESR 190
STVRLF ES+
Sbjct: 183 STVRLFWESQ 192
>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc
PE=2 SV=1
Length = 204
Score = 182 bits (463), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/179 (50%), Positives = 115/179 (64%), Gaps = 4/179 (2%)
Query: 8 RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 65
RK R+L+ +GSVAA+K L + EV V T+ + HF +P V Y+D
Sbjct: 16 RKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVP--VTLYSDA 73
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 125
DEW W + D VLHI+LRRWAD+M++APL ANTLGK+A G+CDNLLTC++RAWD NKPL
Sbjct: 74 DEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPL 133
Query: 126 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 184
PAMNT MW +P T + + + G IP VSK+L CGD G GAMAE I + V+
Sbjct: 134 LFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192
>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC
PE=1 SV=2
Length = 204
Score = 173 bits (438), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 116/191 (60%), Gaps = 6/191 (3%)
Query: 8 RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 65
RK +L+ +GSVAA+K L + EV V T+ + HF +P V Y+D
Sbjct: 16 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDA 73
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 125
DEW W D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct: 74 DEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPL 133
Query: 126 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR- 184
PAMNT MW +P T + + + G IP V+K+L CGD G GAMAE I V+
Sbjct: 134 LFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKE 193
Query: 185 -LFAESRNQSG 194
LF S Q
Sbjct: 194 VLFQHSGFQQS 204
>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1
Length = 625
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 109/172 (63%), Gaps = 5/172 (2%)
Query: 9 KPRILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPK-DVIFYTDE 65
K IL+AA+GSVAAIK + + +V+ V T + +F+++ L V Y +
Sbjct: 30 KYHILVAATGSVAAIKLTLIVKSLLTYKGVDVQVVLTDPARNFVEKEDLTALGVNVYNNA 89
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 125
D+W W+ + + HIELRRWA +++IAPLSANT+ K+A GLCDNLLT ++RAW KP+
Sbjct: 90 DDWKNWDGLECPITHIELRRWAHLLLIAPLSANTMAKMANGLCDNLLTSLIRAWAPLKPI 149
Query: 126 FVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE 175
+APAMNT MW NP T+ HL +I + I P+ K LACGD G G MAE
Sbjct: 150 LLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVLACGDIGMGGMAE 201
>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium
discoideum GN=ppcdc PE=3 SV=1
Length = 197
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Query: 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI---DRAALPKDVIFYTDE 65
K ++L +GSVA IK L + + + T++SL F+ D + Y D+
Sbjct: 12 KKNLILGLTGSVATIKAKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISSKCKIYKDK 71
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY-NKP 124
DEW + + S LHI+LR WA+ ++I+P SANTLGKI+ GLCDNLLT ++RAWDY NK
Sbjct: 72 DEWENVDLLKRSALHIDLRNWANSILISPCSANTLGKISNGLCDNLLTSLIRAWDYKNKS 131
Query: 125 LFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE-PSLIYS 181
+ +APAMNT MW NPFT +H+ ++ + + +I P+ K+L CGD G GAM + P ++
Sbjct: 132 MILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAMEQVPKIVDF 191
Query: 182 TVR 184
T+
Sbjct: 192 TIN 194
>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1
Length = 571
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 116/206 (56%), Gaps = 14/206 (6%)
Query: 8 RKPRILLAASGSVAAIK----FGNLCHCFS-EWAEVRAVATKSSLHFIDRAALPKDVIFY 62
+K IL+ A+GSVA IK L + E ++ + TK + HF+ + V +
Sbjct: 307 KKFHILIGATGSVATIKVPLIIDKLFKIYGPEKISIQLIVTKPAEHFLKGLKMSTHVKIW 366
Query: 63 TDEDEWA--TWNKIGDS-----VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCI 115
+ED W NK S +LH ELR+WADI +IAPLSANTL K+A G+C+NLLT +
Sbjct: 367 REEDAWVFDAVNKNDTSLSLNLILHHELRKWADIFLIAPLSANTLAKLANGICNNLLTSV 426
Query: 116 VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI--DELGISLIPPVSKRLACGDYGNGAM 173
+R W P+ +APAMNTFM+ NP T++HL S+ D I ++ PV K L CGD G G M
Sbjct: 427 MRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVLICGDIGMGGM 486
Query: 174 AEPSLIYSTVRLFAESRNQSGDGKVG 199
E + I VR ++ D + G
Sbjct: 487 REWTDIVEIVRRRINEIRKARDEETG 512
>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=VHS3 PE=1 SV=1
Length = 674
Score = 126 bits (316), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/132 (46%), Positives = 86/132 (65%), Gaps = 3/132 (2%)
Query: 55 LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC 114
LP + F+TD+DEW W + D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT
Sbjct: 434 LPAHIQFWTDQDEWDVWRQRTDPVLHIELRRWADILVVAPLTANTLAKIALGLCDNLLTS 493
Query: 115 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE--LGISLIPPVSKRLAC-GDYGNG 171
++RAW+ P+F+AP+M + +N+ T++H I E +++ P K + GD G
Sbjct: 494 VIRAWNPTFPIFLAPSMGSGTFNSIMTKKHFRIIQEEMPWVTVFKPSEKVMGINGDIGLS 553
Query: 172 AMAEPSLIYSTV 183
M + + I +
Sbjct: 554 GMMDANEIVGKI 565
>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SIS2 PE=1 SV=1
Length = 562
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)
Query: 55 LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC 114
LP + +TD+DEW W + D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT
Sbjct: 353 LPPHIQLWTDQDEWDAWKQRTDPVLHIELRRWADILVVAPLTANTLSKIALGLCDNLLTS 412
Query: 115 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG--ISLIPPVSKRLAC-GDYGNG 171
++RAW+ + P+ +AP+M + +N+ T++ L +I E +++ P K + GD G G
Sbjct: 413 VIRAWNPSYPILLAPSMVSSTFNSMMTKKQLQTIKEEMSWVTVFKPSEKVMDINGDIGLG 472
Query: 172 AMAE 175
M +
Sbjct: 473 GMMD 476
>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1
Length = 531
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 11/168 (6%)
Query: 19 SVAAIKF--GNLCHCF-SEWAEVRAVATKSSLHFIDRAALP-----KDVIFYTDEDEWAT 70
SV +K L + S+ ++ + TKSS +F+ L K V +TD DEW T
Sbjct: 279 SVGKVKLIVNKLLEIYTSDKISIQVILTKSSENFLLPETLNVLENVKKVRVWTDIDEWTT 338
Query: 71 WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 130
W D VLHIELRRWADI+++ PL+ANTL KI+ G+CDNLLT ++RAW+ + P+ +APA
Sbjct: 339 WKTRLDPVLHIELRRWADILLVCPLTANTLAKISLGICDNLLTNVIRAWNSSYPILLAPA 398
Query: 131 MNTFMWNNPFTERHLMSI-DELG-ISLIPPVSKRLAC-GDYGNGAMAE 175
M++ +++ T+R L I D++ I ++ P+ K GD G G M +
Sbjct: 399 MDSHSYSSSTTKRQLRLIADDMPWIEVLKPLEKVFGSYGDIGMGGMTD 446
>sp|Q54433|COAC_STRMU Probable phosphopantothenoylcysteine decarboxylase OS=Streptococcus
mutans serotype c (strain ATCC 700610 / UA159) GN=coaC
PE=3 SV=2
Length = 179
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 13/171 (7%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSEWA-EVRAVATKSSLHFI---DRAALPKDVIF--YTD 64
+ILLA SGS+AA K +L H ++ V + T ++ FI L K+ ++
Sbjct: 4 KILLAVSGSIAAYKAADLSHQLTKLGYHVNVLMTNAAKQFIPPLTLQVLSKNPVYSNVMK 63
Query: 65 EDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKP 124
ED+ N HI L + AD+ ++AP SANTL +A G DN++T + A P
Sbjct: 64 EDDPQVIN-------HIALAKQADLFLLAPASANTLAHLAHGFADNIVTSVALALPLEVP 116
Query: 125 LFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAE 175
F APAMNT M+ NP T+ ++ + + G I P S LACGD G+GA+A+
Sbjct: 117 KFFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSSVLACGDVGSGALAD 167
>sp|P44953|COABC_HAEIN Coenzyme A biosynthesis bifunctional protein CoaBC OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=coaBC PE=3 SV=1
Length = 400
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 24/199 (12%)
Query: 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 65
L I++ +G +AA K L + AEVR V T ++ F+ L
Sbjct: 3 LNGKHIVVGITGGIAAYKTIELIRLLRKAEAEVRVVLTPAAAEFVTPLTL---------- 52
Query: 66 DEWATWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 116
+ + N + S+L HIEL +WAD ++IAP SA+ + ++ G+ ++LL+ I
Sbjct: 53 -QAISGNAVSQSLLDPQAELAMGHIELAKWADAIIIAPASADFIARLTIGMANDLLSTIC 111
Query: 117 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 176
A N P+F+APAMN M++ T+++L ++ GI LI P S ACGD G G M+EP
Sbjct: 112 LAT--NAPIFLAPAMNQQMYHQSITQQNLTTLQTRGIELIGPNSGFQACGDMGKGRMSEP 169
Query: 177 SLIYSTVR-LFAESRNQSG 194
I++ + F++ ++ G
Sbjct: 170 EEIFTALSDFFSQKQDLQG 188
>sp|Q5E8M6|COABC_VIBF1 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=coaBC PE=3 SV=1
Length = 409
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 23/176 (13%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
RILL SG +AA K L E AEVR V TK++ FI + +
Sbjct: 8 RILLGISGGIAAYKCAELTRRLIERGAEVRVVMTKAAKEFITPLTM-----------QAV 56
Query: 70 TWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
+ + + DS+L HIEL +WADI+++AP +A+ + ++A G+ ++LL+ +V A D
Sbjct: 57 SGHPVADSLLDPAAEASMGHIELAKWADIVLLAPATADLIARMAAGMGNDLLSTLVLATD 116
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 176
P+ V+PAMN M++N T+ ++ ++ G+ + P + + ACGD G G M EP
Sbjct: 117 --SPVAVSPAMNQQMYSNIATQENIATLARRGMHIWGPAAGQQACGDVGMGRMLEP 170
>sp|Q7MPS9|COABC_VIBVY Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
vulnificus (strain YJ016) GN=coaBC PE=3 SV=2
Length = 401
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+ILL SG +AA K +L E AEV+ V TK++ FI + +
Sbjct: 8 KILLGISGGIAAYKCADLTRRLKERGAEVQVVMTKAAKEFITPLTM-----------QAV 56
Query: 70 TWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
+ + DS+L HIEL +WAD++++AP +A+ + ++A G+ ++LLT +V A D
Sbjct: 57 SGRPVSDSLLDPAAEASMGHIELAKWADLILLAPATADLIARMAAGMGNDLLTTLVLATD 116
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
P+ V+PAMN M+ N T+ ++ ++ G+ + P + ACGD G G M EP +
Sbjct: 117 --APVAVSPAMNQQMYRNVATQENIATLSRRGMEIWGPAAGEQACGDVGPGRMLEPMQLV 174
Query: 181 STVRLFAESR 190
+ F + +
Sbjct: 175 ALCEQFFQPK 184
>sp|Q8DDX8|COABC_VIBVU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
vulnificus (strain CMCP6) GN=coaBC PE=3 SV=1
Length = 401
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+ILL SG +AA K +L E AEV+ V TK++ FI + +
Sbjct: 8 KILLGISGGIAAYKCADLTRRLKERGAEVQVVMTKAAKEFITPLTM-----------QAV 56
Query: 70 TWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
+ + DS+L HIEL +WAD++++AP +A+ + ++A G+ ++LLT +V A D
Sbjct: 57 SGRPVSDSLLDPAAEASMGHIELAKWADLILLAPATADLIARMAAGMGNDLLTTLVLATD 116
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
P+ V+PAMN M+ N T+ ++ ++ G+ + P + ACGD G G M EP +
Sbjct: 117 --APVAVSPAMNQQMYRNVATQENIATLSRRGMEIWGPAAGEQACGDVGPGRMLEPMQLV 174
Query: 181 STVRLFAESR 190
+ F + +
Sbjct: 175 ALCEQFFQPK 184
>sp|P73881|COABC_SYNY3 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=coaBC PE=3 SV=1
Length = 402
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 7 LRKPRILLAASGSVAAIKFGNLC-HCFSEWAEVRAVATKSS------LHFIDRAALPKDV 59
++ RIL+ G +AA K + F + AEVR + T + L F A P
Sbjct: 2 VKGKRILIGVGGGIAAYKICEVVSQLFQQGAEVRVILTAEAEKFVTPLTFTTLARHPA-- 59
Query: 60 IFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW 119
Y D D W I LHI+L WADI +IAPL+A+TL K+ G D+LL+ V A
Sbjct: 60 --YGDAD---FWQPIHHRPLHIDLGEWADIFLIAPLTAHTLAKLGHGFADDLLSNTVLA- 113
Query: 120 DYNKPLFVAPAMNTFMWNNPFTERHLMS-IDELGISLIPPVSKRLACGDYGNGAMAEPSL 178
+ P+ +APAMNT MW +R+L + + L+ P LAC G G +AEP+
Sbjct: 114 -SSCPILLAPAMNTDMWEQEAVQRNLQQLLGDRRYHLLAPNGGLLACDRRGVGRLAEPAQ 172
Query: 179 IYSTVR 184
I ++
Sbjct: 173 IMHRLQ 178
>sp|Q87T89|COABC_VIBPA Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=coaBC PE=3 SV=1
Length = 399
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 24/187 (12%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+ILL SG +AA K L E A+V+ V TK++ FI + +
Sbjct: 8 KILLGISGGIAAYKCAELTRRLIERGAQVQVVMTKAAKEFITPLTM-----------QAV 56
Query: 70 TWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
+ + DS+L HIEL +WAD++++AP +A+ + +++ G+ ++LLT +V A D
Sbjct: 57 SGRPVSDSLLDPAAEASMGHIELAKWADLVLLAPATADLIARMSAGMGNDLLTTLVLATD 116
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP-SLI 179
P+ V+PAMN M+ N T+ ++ ++ G+++ P + ACGD G G M EP L+
Sbjct: 117 --SPVAVSPAMNQQMYRNIATQENIATLARRGMNIWGPAAGEQACGDVGPGRMLEPMQLV 174
Query: 180 YSTVRLF 186
+ + F
Sbjct: 175 HLCEQFF 181
>sp|O35033|COABC_BACSU Probable coenzyme A biosynthesis bifunctional protein CoaBC
OS=Bacillus subtilis (strain 168) GN=coaBC PE=3 SV=1
Length = 406
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDR---AALPKDVIFY 62
L +LL SG +A K L + A V+ + T+S+ F+ AL + + Y
Sbjct: 2 LNNRNVLLCVSGGIAVYKACALTSKLVQAGANVKVIMTESACRFVSPLTFQALSRHEV-Y 60
Query: 63 TDEDEWATWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY 121
TD T+ + SV+ HI+ WAD++++AP +AN +GK+A G+ D++LT + A
Sbjct: 61 TD-----TFKEQNPSVISHIDAADWADLIIVAPATANVIGKLANGIADDMLTTTLLAA-- 113
Query: 122 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP-SLIY 180
P+++APAMN M+++P +R++ + + G I P LACG G G + EP +++
Sbjct: 114 TAPVWIAPAMNVHMYDHPAVKRNISVLYQDGYCFIEPSEGYLACGYVGKGRLEEPENIVK 173
Query: 181 STVRLFAESRNQSGDGK 197
+ FAE + +GK
Sbjct: 174 LAEKHFAEETSAPLEGK 190
>sp|Q9KVD1|COABC_VIBCH Coenzyme A biosynthesis bifunctional protein CoaBC OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=coaBC PE=3 SV=1
Length = 399
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 23/176 (13%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+ILL SG +AA K L E A V+ V T ++ FI + +
Sbjct: 8 KILLGISGGIAAYKCAELTRRLVERGATVQVVMTHAAKEFITPLTM-----------QAV 56
Query: 70 TWNKIGDSVL---------HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
+ + DS+L HIEL +WAD++++AP +A+ + ++A G+ ++LLT ++ A
Sbjct: 57 SGRPVSDSLLDPAAEASMGHIELAKWADLVLLAPATADLIARMAAGMGNDLLTTLILA-- 114
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 176
+ P+ +APAMN M+ N T+ +L ++ G P + ACGD G G M EP
Sbjct: 115 TSAPVAIAPAMNQQMYRNIATQENLQTLIRRGYLTWGPAAGEQACGDVGPGRMLEP 170
>sp|P0ABQ0|COABC_ECOLI Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli (strain K12) GN=coaBC PE=1 SV=2
Length = 406
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+I+L SG +AA K L + A+VR T+++ FI +L + V Y D
Sbjct: 7 KIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSL-QAVSGYPVSDSL- 64
Query: 70 TWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 128
+ ++ + HIEL +WAD++++AP +A+ + ++A G+ ++L++ I A P+ V
Sbjct: 65 -LDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATP--APVAVL 121
Query: 129 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLI 179
PAMN M+ T+ +L + G+ + P S ACGD G G M +P I
Sbjct: 122 PAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTI 172
>sp|P0ABQ1|COABC_ECOL6 Coenzyme A biosynthesis bifunctional protein CoaBC OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaBC
PE=3 SV=2
Length = 406
Score = 77.0 bits (188), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
+I+L SG +AA K L + A+VR T+++ FI +L + V Y D
Sbjct: 7 KIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAKAFITPLSL-QAVSGYPVSDSL- 64
Query: 70 TWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 128
+ ++ + HIEL +WAD++++AP +A+ + ++A G+ ++L++ I A P+ V
Sbjct: 65 -LDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGMANDLVSTICLATP--APVAVL 121
Query: 129 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLI 179
PAMN M+ T+ +L + G+ + P S ACGD G G M +P I
Sbjct: 122 PAMNQQMYRAAATQHNLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTI 172
>sp|P30197|EPID_STAEP Epidermin decarboxylase OS=Staphylococcus epidermidis GN=epiD PE=1
SV=1
Length = 181
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 11 RILLAASGSVAAIKFGN-LCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
++L+ A+ S+ I + + + EV + + SS +FI+ L + D
Sbjct: 4 KLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN---- 55
Query: 70 TWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 128
+++I D +L HI + + +++ P SANT+ KIA G+CDNLLT + Y K LF+
Sbjct: 56 LYDEIKDPLLNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTG-YQK-LFIF 113
Query: 129 PAMNTFMWNNPFTERHLMSIDELGISLIPP---VSKRLACGDYGNG 171
P MN MW NPF ++++ + + + P S ++ G Y N
Sbjct: 114 PNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNN 159
>sp|Q9RC23|MRSD_BACSY Mersacidin decarboxylase OS=Bacillus sp. (strain HIL-Y85/54728)
GN=mrsD PE=1 SV=1
Length = 194
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 33 SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVI 92
S + E+R V TK++ I P + Y + ++ + G H+E+ RWADI I
Sbjct: 33 SFFKEIRVVMTKTAEDLI-----PAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCI 87
Query: 93 APLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 152
P +AN LG+ A G+ NL+ V A +N F P MN MWN R++ + + G
Sbjct: 88 IPATANILGQTANGVAMNLVATTVLAHPHNTIFF--PNMNDLMWNKTVVSRNIEQLRKDG 145
Query: 153 ISLIPPVS 160
+I PV
Sbjct: 146 HIVIEPVE 153
>sp|P67733|COABC_MYCTU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Mycobacterium
tuberculosis GN=coaBC PE=3 SV=1
Length = 418
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSEWAE-VRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
++++ SG +AA K + +E + VR + T+S+L F+ A F E
Sbjct: 10 QVIVGVSGGIAAYKACTVVRQLTEASHRVRVIPTESALRFVGAA------TFEALSGEPV 63
Query: 70 TWNKIGD--SVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFV 127
+ D +V H+ L + AD++V+AP +A+ L + A G D+LLT + P+
Sbjct: 64 CTDVFADVPAVPHVHLGQQADLVVVAPATADLLARAAAGRADDLLTATL--LTARCPVLF 121
Query: 128 APAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFA 187
APAM+T MW +P T ++ ++ G ++ P + RL D G G + E I + +L
Sbjct: 122 APAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLAQLLL 181
Query: 188 ESRN 191
E +
Sbjct: 182 ERHD 185
>sp|P67734|COABC_MYCBO Coenzyme A biosynthesis bifunctional protein CoaBC OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=coaBC PE=3
SV=1
Length = 418
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSEWAE-VRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 69
++++ SG +AA K + +E + VR + T+S+L F+ A F E
Sbjct: 10 QVIVGVSGGIAAYKACTVVRQLTEASHRVRVIPTESALRFVGAA------TFEALSGEPV 63
Query: 70 TWNKIGD--SVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFV 127
+ D +V H+ L + AD++V+AP +A+ L + A G D+LLT + P+
Sbjct: 64 CTDVFADVPAVPHVHLGQQADLVVVAPATADLLARAAAGRADDLLTATL--LTARCPVLF 121
Query: 128 APAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFA 187
APAM+T MW +P T ++ ++ G ++ P + RL D G G + E I + +L
Sbjct: 122 APAMHTEMWLHPATVDNVATLRRRGAVVLEPATGRLTGADSGAGRLPEAEEITTLAQLLL 181
Query: 188 ESRN 191
E +
Sbjct: 182 ERHD 185
>sp|O51752|COABC_BORBU Coenzyme A biosynthesis bifunctional protein CoaBC OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=coaBC PE=3 SV=1
Length = 390
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 8 RKPRILLAASGSVAAIKFGNLCHCFSEWA-EVRAVATKSSLHFIDRAALPKDVIFYTDED 66
+ IL+ G +A+ K + + +V+ + T+++ FI L ++
Sbjct: 3 KNKHILIGICGGIASYKSVYIVSSLVKLGYKVKVIMTQNATKFITPLTLET-----ISKN 57
Query: 67 EWAT--WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKP 124
+ T W+ + V HI++ +WA ++++ P + NT+ KIA G+ D+ LT I+ A P
Sbjct: 58 KIITNLWDLDHNEVEHIKIAKWAHLILVIPATYNTISKIASGIADDALTTIISAS--TAP 115
Query: 125 LFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 184
+ A AMN M++NP + ++ + I P LAC G + I ++
Sbjct: 116 TYFAIAMNNIMYSNPILKENIKKLKTYNYKFIEPDKGFLACSSNALGRLKNEDKI---IK 172
Query: 185 LFAESRNQS 193
+ NQ
Sbjct: 173 IILNEFNQK 181
>sp|Q58323|COABC_METJA Coenzyme A biosynthesis bifunctional protein CoaBC
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=coaBC
PE=3 SV=1
Length = 403
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 7 LRKPRILLAASGSVAAIKFGNLC-HCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDE 65
L +IL+A + S+AAI+ L AEV + T+ + I + AL F
Sbjct: 20 LENKKILVAVTSSIAAIETPKLMRELIRHGAEVYCIITEETKKIIGKEALK----FGCGN 75
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 125
+ + +I + HI L D ++I P +AN + KI G+ DN++ + NKP+
Sbjct: 76 E---VYEEITGDIEHILLYNECDCLLIYPATANIISKINLGIADNIVNTTALMFFGNKPI 132
Query: 126 FVAPAMNTFMWNNPFTERHLMSIDEL-GISLIPP 158
F+ PAM+ M+N +RH+ + E I +I P
Sbjct: 133 FIVPAMHENMFNA--IKRHIDKLKEKDKIYIISP 164
>sp|Q58140|Y730_METJA Uncharacterized protein MJ0730 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0730 PE=4 SV=1
Length = 186
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLT-CIVRAWDYNKPLFVAPAMN 132
D+ ++AP +ANT KIA G+ D L+T + +A P+++ P N
Sbjct: 82 DLFLVAPATANTTAKIAYGIADTLITNSVAQAMKAKVPVYIFPPDN 127
>sp|Q9HX08|PAAD_PSEAE Probable aromatic acid decarboxylase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA4019 PE=1 SV=1
Length = 209
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY----NKPLFVAPAMNTFMWNNPFTER 143
+ MVI P S TL +A G C+NL I RA D +PL + P PF+
Sbjct: 96 NAMVICPCSTGTLSAVATGACNNL---IERAADVALKERRPLVLVP------REAPFSSI 146
Query: 144 HL---MSIDELGISLIP 157
HL + + LG ++P
Sbjct: 147 HLENMLKLSNLGAVILP 163
>sp|P72743|PAAD_SYNY3 Probable aromatic acid decarboxylase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr1099 PE=3 SV=1
Length = 206
Score = 34.7 bits (78), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 23/92 (25%)
Query: 85 RWADI-------------MVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYN----KPLFV 127
RW D+ MV+ P S +T+ K+A G+ +LL RA D KPL V
Sbjct: 79 RWGDVGATIASGSYRCAGMVVLPCSMSTVAKLAVGMSSDLLE---RAADVQIKEGKPLVV 135
Query: 128 APAMNTFMWNNPFTERHLMSIDELGISLIPPV 159
P + R+L S+ E G+ ++P +
Sbjct: 136 VPRETPL---SLIHLRNLTSLAEAGVRIVPAI 164
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis
thaliana GN=At2g01600 PE=2 SV=2
Length = 571
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 86 WADIMVIAP---LSANTLGKIAGGLCDNLLTCIVRAWDY---NKPLFVAPAMNTFMWNNP 139
W +V AP +SA+T K+AGGL L+ + Y +P++ APA N F ++P
Sbjct: 425 WELALVTAPSSDISASTERKLAGGLDTLTLSSLYDDGAYIASQRPVYGAPAPNPFASHDP 484
Query: 140 F 140
F
Sbjct: 485 F 485
>sp|P94404|BSDB_BACSU Phenolic acid decarboxylase subunit B OS=Bacillus subtilis (strain
168) GN=bsdB PE=1 SV=1
Length = 204
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHL-- 145
D M++AP S +L I G+ DNLLT RA D L + P + HL
Sbjct: 90 DGMIVAPCSMKSLASIRTGMADNLLT---RAADVM--LKERKKLVLLTRETPLNQIHLEN 144
Query: 146 -MSIDELGISLIPPV 159
+++ ++G ++PP+
Sbjct: 145 MLALTKMGTIILPPM 159
>sp|Q04810|DPAB_BACSU Dipicolinate synthase subunit B OS=Bacillus subtilis (strain 168)
GN=dpaB PE=1 SV=1
Length = 200
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 5 TGLRKPRILLAASGSVAAIK--FGNLCHCFSEWAEVRAVAT----KSSLHFIDRAALPKD 58
+ L+ RI +GS + F + +E AEVR V T ++ F + A K
Sbjct: 2 SSLKGKRIGFGLTGSHCTYEAVFPQIEELVNEGAEVRPVVTFNVKSTNTRFGEGAEWVKK 61
Query: 59 VIFYTDEDEWATWNKIGDSVLHIEL---RRWADIMVIAPLSANTLGKIAGGLCDNLLTCI 115
+ E T + DS++ E + D MVIAPL+ N++ K+A + D+ +
Sbjct: 62 I-------EDLTGYEAIDSIVKAEPLGPKLPLDCMVIAPLTGNSMSKLANAMTDSPVLMA 114
Query: 116 VRAW-DYNKPLFVAPAMNTFMWNNPFTERHLMS 147
+A N+P+ + + N + N LMS
Sbjct: 115 AKATIRNNRPVVLGISTNDALGLNGTNLMRLMS 147
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 11 RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDV 59
RIL+ +G++A I+F N C ++++ KSS+ ++++A P+DV
Sbjct: 534 RILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKA--PRDV 580
>sp|A2AGH6|MED12_MOUSE Mediator of RNA polymerase II transcription subunit 12 OS=Mus
musculus GN=Med12 PE=2 SV=1
Length = 2190
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 66 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 125
D + W +I L +L++ A+ P + G G L ++ I R WDYN+ L
Sbjct: 182 DPFTEWTQIITKYLWEQLQKMAEYYRPGPAGSGGCGSTIGPLPHDVEMAI-RQWDYNEKL 240
Query: 126 FVAPAMNTFMWNNPFTERH 144
+ FM+ + +RH
Sbjct: 241 AL------FMFQDGMLDRH 253
>sp|C8ZCV7|SDC25_YEAS8 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=SDC25 PE=3 SV=1
Length = 1252
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 124 PLFVAPAMNTFMWNNPFTERHL 145
P F + NT WNNPF +HL
Sbjct: 358 PRFFKDSFNTISWNNPFLRKHL 379
>sp|A7A0P0|SDC25_YEAS7 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces
cerevisiae (strain YJM789) GN=SDC25 PE=3 SV=2
Length = 1252
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 124 PLFVAPAMNTFMWNNPFTERHL 145
P F + NT WNNPF +HL
Sbjct: 358 PRFFKDSFNTISWNNPFLRKHL 379
>sp|B5VMS9|SDC25_YEAS6 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=SDC25 PE=3 SV=1
Length = 1265
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 124 PLFVAPAMNTFMWNNPFTERHL 145
P F + NT WNNPF +HL
Sbjct: 358 PRFFKDSFNTISWNNPFLRKHL 379
>sp|B3LTF3|SDC25_YEAS1 Guanine nucleotide exchange factor SDC25 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=SDC25 PE=3 SV=1
Length = 1252
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 124 PLFVAPAMNTFMWNNPFTERHL 145
P F + NT WNNPF +HL
Sbjct: 358 PRFFKDSFNTISWNNPFLRKHL 379
>sp|O58742|PAAD_PYRHO Probable aromatic acid decarboxylase OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1014 PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
D MVIAP S TLG IA G NL+T RA D
Sbjct: 71 DAMVIAPCSMKTLGAIANGFSYNLIT---RAAD 100
>sp|Q9HJ72|PAAD_THEAC Probable aromatic acid decarboxylase OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1100 PE=3 SV=1
Length = 180
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLT 113
D MVI P S T+ KIA G+ D L+T
Sbjct: 76 DSMVIVPCSITTISKIAAGISDTLIT 101
>sp|Q9PKH2|PAAD_CHLMU Probable aromatic acid decarboxylase OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=TC_0493 PE=3 SV=1
Length = 192
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVR-AWDYNKPLFVAPAMNTFMWNNPFTERHLM 146
D +I P S T+ I+ GL DNLL + A +PL + P P + HL
Sbjct: 84 DATIIVPCSVATIAAISCGLSDNLLRRVADVALKEKRPLILVP------RETPLSAIHLE 137
Query: 147 SIDEL---GISLIPPV 159
++ +L G ++PP+
Sbjct: 138 NLLKLAQNGAVILPPM 153
>sp|Q9V030|PAAD_PYRAB Probable aromatic acid decarboxylase OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB09680 PE=3 SV=1
Length = 181
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
D MVIAP S TL IA G +NL+T RA D
Sbjct: 71 DAMVIAPCSMKTLSAIANGFSNNLIT---RAAD 100
>sp|Q9PPF1|PAAD_CAMJE Probable aromatic acid decarboxylase OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=Cj0768c PE=3
SV=1
Length = 187
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 91 VIAPLSANTLGKIAGGLCDNLLT-CIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSID 149
+IAP S ++L KI G D LL A K L + F + H++ +
Sbjct: 83 IIAPCSISSLAKIHAGFADTLLMRAAAVALKERKKLILGVREMPF---STLNLEHMLKLS 139
Query: 150 ELGISLIPPV 159
++G+ + PP+
Sbjct: 140 QMGVIIAPPI 149
>sp|Q9RR91|PAAD_DEIRA Probable aromatic acid decarboxylase OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2603
PE=3 SV=1
Length = 195
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 90 MVIAPLSANTLGKIAGGLCDNLLT 113
M+I P SA TL K+A G DNL++
Sbjct: 88 MLIVPCSAGTLAKVAHGFADNLIS 111
>sp|O84222|PAAD_CHLTR Probable aromatic acid decarboxylase OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=CT_220 PE=3 SV=1
Length = 192
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVR-AWDYNKPLFVAPAMNTFMWNNPFTERHLM 146
D +I P S T+ I+ GL DNLL + A +PL + P P + HL
Sbjct: 84 DATIIVPCSVATVAAISCGLADNLLRRVADVALKEKRPLILVP------REAPLSAIHLE 137
Query: 147 SIDEL---GISLIPPV 159
++ +L G ++PP+
Sbjct: 138 NLLKLAQNGAVILPPM 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,283,629
Number of Sequences: 539616
Number of extensions: 2918475
Number of successful extensions: 5636
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5566
Number of HSP's gapped (non-prelim): 50
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)