Query 029085
Match_columns 199
No_of_seqs 144 out of 1111
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02496 probable phosphopanto 100.0 4.2E-60 9E-65 388.7 20.7 198 1-198 11-208 (209)
2 PRK07313 phosphopantothenoylcy 100.0 9.5E-55 2E-59 352.3 18.9 176 9-188 1-179 (182)
3 TIGR02113 coaC_strep phosphopa 100.0 2.6E-54 5.7E-59 348.2 18.4 174 10-187 1-177 (177)
4 PRK05579 bifunctional phosphop 100.0 6.5E-51 1.4E-55 364.4 18.9 185 7-197 4-191 (399)
5 PRK13982 bifunctional SbtC-lik 100.0 7.8E-51 1.7E-55 368.8 19.2 187 5-197 66-259 (475)
6 KOG0672 Halotolerance protein 100.0 1.8E-51 3.9E-56 327.4 12.4 186 3-188 14-206 (218)
7 TIGR00521 coaBC_dfp phosphopan 100.0 2.5E-48 5.5E-53 346.6 18.9 183 8-197 2-188 (390)
8 PRK05920 aromatic acid decarbo 100.0 1.8E-41 3.9E-46 278.5 19.0 165 7-184 1-182 (204)
9 PRK08305 spoVFB dipicolinate s 100.0 6.6E-42 1.4E-46 279.1 15.9 173 7-194 3-189 (196)
10 PRK06029 3-octaprenyl-4-hydrox 100.0 4.3E-41 9.3E-46 272.7 15.6 155 10-184 2-167 (185)
11 TIGR00421 ubiX_pad polyprenyl 100.0 4E-40 8.6E-45 266.6 15.0 158 11-184 1-164 (181)
12 COG0452 Dfp Phosphopantothenoy 100.0 3.7E-40 8.1E-45 294.3 16.3 182 7-197 2-186 (392)
13 TIGR02852 spore_dpaB dipicolin 100.0 3.4E-39 7.3E-44 261.7 14.9 164 10-193 1-183 (187)
14 PF02441 Flavoprotein: Flavopr 100.0 3.1E-37 6.7E-42 236.7 9.6 127 10-141 1-129 (129)
15 COG0163 UbiX 3-polyprenyl-4-hy 100.0 2.2E-30 4.7E-35 206.7 13.4 161 9-184 2-169 (191)
16 TIGR02699 archaeo_AfpA archaeo 100.0 1E-29 2.2E-34 204.2 12.0 142 11-157 1-165 (174)
17 TIGR02700 flavo_MJ0208 archaeo 99.9 4.8E-25 1E-29 185.0 10.6 117 11-130 1-130 (234)
18 COG1036 Archaeal flavoproteins 99.9 3.2E-21 7E-26 151.1 10.8 153 6-183 5-184 (187)
19 TIGR02536 eut_hyp ethanolamine 98.4 1.4E-06 3.1E-11 72.0 8.2 75 85-159 52-135 (207)
20 PF06258 Mito_fiss_Elm1: Mitoc 89.3 14 0.00031 32.3 14.2 150 7-187 144-309 (311)
21 PF03033 Glyco_transf_28: Glyc 84.7 2.4 5.1E-05 31.5 5.0 45 12-56 1-47 (139)
22 PRK10116 universal stress prot 84.1 15 0.00032 27.2 9.5 34 8-41 2-37 (142)
23 COG1819 Glycosyl transferases, 84.0 9.4 0.0002 34.6 9.5 132 7-189 234-368 (406)
24 COG3660 Predicted nucleoside-d 80.9 24 0.00052 30.8 10.1 154 7-188 159-327 (329)
25 PF00289 CPSase_L_chain: Carba 80.9 7.4 0.00016 28.8 6.3 97 9-160 2-107 (110)
26 cd01075 NAD_bind_Leu_Phe_Val_D 79.3 32 0.0007 27.9 10.3 31 122-158 107-138 (200)
27 PRK10499 PTS system N,N'-diace 75.8 29 0.00062 25.4 8.4 54 86-152 50-104 (106)
28 TIGR00661 MJ1255 conserved hyp 72.8 8.3 0.00018 33.3 5.4 45 11-55 1-47 (321)
29 PF13528 Glyco_trans_1_3: Glyc 71.3 6 0.00013 33.5 4.1 43 10-53 1-45 (318)
30 PF00582 Usp: Universal stress 70.8 10 0.00023 26.9 4.8 34 8-41 1-36 (140)
31 TIGR00853 pts-lac PTS system, 69.9 33 0.00072 24.5 7.2 36 86-132 50-85 (95)
32 PF13528 Glyco_trans_1_3: Glyc 69.3 14 0.00031 31.2 6.0 52 117-185 265-316 (318)
33 PF01171 ATP_bind_3: PP-loop f 68.8 9.4 0.0002 30.2 4.5 32 11-42 1-34 (182)
34 COG0707 MurG UDP-N-acetylgluco 67.9 91 0.002 27.9 11.2 136 9-188 182-323 (357)
35 PRK10537 voltage-gated potassi 67.8 65 0.0014 29.2 10.2 115 9-159 240-357 (393)
36 cd03784 GT1_Gtf_like This fami 65.5 42 0.00092 29.4 8.4 75 79-188 297-371 (401)
37 cd01076 NAD_bind_1_Glu_DH NAD( 65.2 15 0.00032 30.7 5.2 31 122-158 128-158 (227)
38 PRK09982 universal stress prot 61.9 14 0.0003 27.8 4.1 34 8-41 2-37 (142)
39 cd03784 GT1_Gtf_like This fami 60.6 15 0.00033 32.2 4.7 46 11-56 2-49 (401)
40 PRK05678 succinyl-CoA syntheta 60.4 76 0.0017 27.6 8.8 32 10-45 10-42 (291)
41 PRK00726 murG undecaprenyldiph 59.1 22 0.00049 30.6 5.4 77 82-190 248-325 (357)
42 TIGR01133 murG undecaprenyldip 57.8 18 0.0004 30.8 4.6 35 11-45 2-38 (348)
43 PRK13608 diacylglycerol glucos 56.7 1.4E+02 0.003 26.5 10.2 54 82-157 269-322 (391)
44 TIGR00725 conserved hypothetic 54.3 46 0.00099 26.1 6.0 35 84-130 89-123 (159)
45 COG1819 Glycosyl transferases, 54.1 15 0.00033 33.3 3.6 46 9-54 1-48 (406)
46 PF13241 NAD_binding_7: Putati 53.7 16 0.00035 26.2 3.1 35 7-45 5-40 (103)
47 cd05211 NAD_bind_Glu_Leu_Phe_V 53.3 99 0.0021 25.5 8.1 32 121-158 118-149 (217)
48 PRK12815 carB carbamoyl phosph 53.3 1.4E+02 0.0031 30.6 10.7 39 8-46 6-52 (1068)
49 TIGR02432 lysidine_TilS_N tRNA 53.1 25 0.00053 27.7 4.3 34 11-44 1-36 (189)
50 cd03785 GT1_MurG MurG is an N- 53.1 23 0.00051 30.1 4.5 36 11-46 1-38 (350)
51 TIGR03590 PseG pseudaminic aci 53.0 59 0.0013 27.6 6.9 37 10-46 171-210 (279)
52 COG0037 MesJ tRNA(Ile)-lysidin 52.7 25 0.00054 29.8 4.5 36 9-44 21-56 (298)
53 PLN02828 formyltetrahydrofolat 52.2 26 0.00057 30.2 4.6 42 2-45 63-107 (268)
54 cd05564 PTS_IIB_chitobiose_lic 52.0 84 0.0018 22.3 6.7 35 85-130 45-79 (96)
55 PLN02735 carbamoyl-phosphate s 51.3 79 0.0017 32.6 8.5 36 9-44 23-66 (1102)
56 PF09623 Cas_NE0113: CRISPR-as 51.3 31 0.00067 29.0 4.7 42 9-51 1-46 (224)
57 PF02635 DrsE: DsrE/DsrF-like 51.0 36 0.00079 24.1 4.6 43 10-52 1-51 (122)
58 PF02670 DXP_reductoisom: 1-de 50.5 16 0.00035 28.0 2.7 32 12-44 2-33 (129)
59 PRK00726 murG undecaprenyldiph 50.4 28 0.0006 30.0 4.6 36 10-45 2-39 (357)
60 PRK10696 tRNA 2-thiocytidine b 48.8 36 0.00079 28.6 4.9 35 8-42 28-66 (258)
61 COG3962 Acetolactate synthase 48.7 21 0.00046 33.5 3.6 72 110-188 97-171 (617)
62 TIGR00243 Dxr 1-deoxy-D-xylulo 48.3 24 0.00053 32.0 3.9 35 9-44 2-36 (389)
63 PF03446 NAD_binding_2: NAD bi 47.7 1.3E+02 0.0028 23.2 7.9 116 10-161 2-122 (163)
64 cd01993 Alpha_ANH_like_II This 46.8 36 0.00079 26.3 4.4 34 11-44 1-38 (185)
65 cd05565 PTS_IIB_lactose PTS_II 45.8 1.1E+02 0.0025 22.1 7.2 38 86-134 47-84 (99)
66 TIGR00730 conserved hypothetic 45.5 48 0.0011 26.6 4.9 84 83-185 93-177 (178)
67 PRK10669 putative cation:proto 44.3 2.7E+02 0.006 26.1 10.8 116 9-158 417-535 (558)
68 PRK06719 precorrin-2 dehydroge 43.8 45 0.00097 26.0 4.4 32 7-41 11-42 (157)
69 PF09001 DUF1890: Domain of un 43.6 32 0.0007 26.7 3.4 27 25-51 16-43 (139)
70 KOG1502 Flavonol reductase/cin 43.5 33 0.00071 30.5 3.9 34 12-46 7-41 (327)
71 PRK06027 purU formyltetrahydro 43.3 33 0.00072 29.7 3.9 41 3-45 83-126 (286)
72 cd05560 Xcc1710_like Xcc1710_l 43.2 21 0.00045 26.3 2.3 42 10-51 53-95 (109)
73 PRK15118 universal stress glob 42.9 51 0.0011 24.4 4.5 34 8-41 2-37 (144)
74 PF10727 Rossmann-like: Rossma 42.7 46 0.001 25.2 4.2 38 5-46 6-44 (127)
75 cd01992 PP-ATPase N-terminal d 42.6 48 0.001 25.8 4.5 36 11-46 1-38 (185)
76 TIGR00655 PurU formyltetrahydr 42.6 42 0.00091 29.0 4.4 41 3-45 78-121 (280)
77 PF04430 DUF498: Protein of un 42.3 16 0.00034 26.8 1.5 44 8-51 52-96 (110)
78 PRK06249 2-dehydropantoate 2-r 42.3 1.8E+02 0.0038 25.0 8.3 34 9-45 5-38 (313)
79 COG2515 Acd 1-aminocyclopropan 42.0 1.5E+02 0.0032 26.3 7.6 53 86-151 180-232 (323)
80 TIGR01369 CPSaseII_lrg carbamo 41.9 2.4E+02 0.0051 29.0 10.2 37 8-44 5-49 (1050)
81 PLN02477 glutamate dehydrogena 41.8 2.8E+02 0.006 25.4 9.8 31 122-158 303-333 (410)
82 PRK14030 glutamate dehydrogena 41.6 1.7E+02 0.0037 27.2 8.3 33 121-159 335-367 (445)
83 PTZ00079 NADP-specific glutama 41.4 3E+02 0.0065 25.7 11.1 32 121-158 344-375 (454)
84 cd00248 Mth938-like Mth938-lik 41.2 21 0.00046 26.2 2.1 42 10-51 53-95 (109)
85 PRK14664 tRNA-specific 2-thiou 41.1 55 0.0012 29.4 5.0 36 7-44 3-38 (362)
86 PRK13303 L-aspartate dehydroge 40.5 2.3E+02 0.0049 24.0 10.4 111 11-157 3-118 (265)
87 PRK10660 tilS tRNA(Ile)-lysidi 40.3 55 0.0012 30.0 5.0 36 9-44 15-53 (436)
88 PRK05294 carB carbamoyl phosph 39.4 2.2E+02 0.0048 29.2 9.6 35 9-43 7-49 (1066)
89 TIGR01426 MGT glycosyltransfer 39.2 1E+02 0.0022 27.1 6.4 55 116-189 305-359 (392)
90 PRK13010 purU formyltetrahydro 38.8 46 0.001 28.9 4.1 42 3-46 87-131 (289)
91 PRK14665 mnmA tRNA-specific 2- 38.7 59 0.0013 29.1 4.8 33 8-42 4-36 (360)
92 PF04101 Glyco_tran_28_C: Glyc 37.7 43 0.00094 25.6 3.4 56 82-156 68-123 (167)
93 cd01988 Na_H_Antiporter_C The 37.4 63 0.0014 23.0 4.1 32 11-42 1-34 (132)
94 cd00293 USP_Like Usp: Universa 37.4 73 0.0016 22.0 4.4 32 11-42 1-34 (130)
95 PRK06718 precorrin-2 dehydroge 37.3 53 0.0011 26.7 4.0 33 7-42 8-40 (202)
96 COG1648 CysG Siroheme synthase 36.7 71 0.0015 26.4 4.7 38 7-47 10-47 (210)
97 PF03054 tRNA_Me_trans: tRNA m 36.3 57 0.0012 29.3 4.3 31 10-42 1-31 (356)
98 cd05125 Mth938_2P1-like Mth938 36.1 30 0.00065 25.8 2.2 43 9-51 54-97 (114)
99 PHA03392 egt ecdysteroid UDP-g 36.0 92 0.002 29.1 5.8 34 116-156 378-411 (507)
100 cd00377 ICL_PEPM Members of th 35.4 1.1E+02 0.0024 25.7 5.7 66 121-188 68-135 (243)
101 COG3980 spsG Spore coat polysa 35.0 73 0.0016 28.0 4.6 76 8-95 157-236 (318)
102 PRK05562 precorrin-2 dehydroge 34.6 62 0.0013 27.1 4.0 39 7-48 23-61 (223)
103 PRK00025 lpxB lipid-A-disaccha 34.3 99 0.0021 26.8 5.5 34 82-132 257-290 (380)
104 PLN00125 Succinyl-CoA ligase [ 34.3 3.2E+02 0.0069 23.9 9.7 121 1-160 5-129 (300)
105 PRK09590 celB cellobiose phosp 34.2 95 0.0021 22.7 4.6 35 10-44 2-38 (104)
106 cd01712 ThiI ThiI is required 33.7 79 0.0017 24.6 4.4 33 11-45 1-33 (177)
107 PF00551 Formyl_trans_N: Formy 33.1 62 0.0014 25.6 3.7 37 10-48 1-40 (181)
108 TIGR00215 lpxB lipid-A-disacch 32.7 3.5E+02 0.0077 23.9 11.6 76 83-190 264-348 (385)
109 PRK12446 undecaprenyldiphospho 32.7 76 0.0017 27.9 4.6 37 10-47 2-41 (352)
110 cd05126 Mth938 Mth938 domain. 32.6 38 0.00082 25.3 2.3 42 10-51 59-102 (117)
111 PRK05447 1-deoxy-D-xylulose 5- 32.4 53 0.0011 29.9 3.5 33 9-42 2-34 (385)
112 TIGR01470 cysG_Nterm siroheme 32.1 78 0.0017 25.8 4.2 119 7-147 7-138 (205)
113 COG0482 TrmU Predicted tRNA(5- 31.6 89 0.0019 28.1 4.7 33 8-42 2-34 (356)
114 PF13460 NAD_binding_10: NADH( 31.3 51 0.0011 25.3 2.9 31 12-46 2-33 (183)
115 PRK12446 undecaprenyldiphospho 31.3 1.6E+02 0.0036 25.8 6.5 77 83-189 249-325 (352)
116 TIGR02195 heptsyl_trn_II lipop 31.2 96 0.0021 26.6 4.9 42 11-52 1-46 (334)
117 COG1184 GCD2 Translation initi 31.0 58 0.0013 28.6 3.4 10 120-129 219-228 (301)
118 PRK07667 uridine kinase; Provi 30.9 58 0.0013 26.0 3.2 38 8-45 14-55 (193)
119 cd04951 GT1_WbdM_like This fam 30.8 74 0.0016 26.6 4.1 34 11-44 1-38 (360)
120 COG1104 NifS Cysteine sulfinat 30.7 84 0.0018 28.6 4.5 47 108-160 73-125 (386)
121 cd01987 USP_OKCHK USP domain i 30.7 82 0.0018 22.4 3.8 32 11-42 1-34 (124)
122 TIGR01019 sucCoAalpha succinyl 30.3 3.6E+02 0.0078 23.3 8.7 109 11-160 9-122 (286)
123 PRK09435 membrane ATPase/prote 30.3 1.2E+02 0.0026 26.9 5.3 42 8-49 53-98 (332)
124 PRK10916 ADP-heptose:LPS hepto 30.2 88 0.0019 27.2 4.5 42 11-52 2-47 (348)
125 cd03789 GT1_LPS_heptosyltransf 30.1 1.1E+02 0.0025 25.4 5.1 43 11-53 1-47 (279)
126 KOG2250 Glutamate/leucine/phen 29.8 3.4E+02 0.0073 25.7 8.2 133 5-160 247-390 (514)
127 COG0059 IlvC Ketol-acid reduct 29.6 1.1E+02 0.0025 27.1 4.9 50 7-62 16-66 (338)
128 cd01989 STK_N The N-terminal d 29.6 81 0.0017 23.2 3.7 31 11-41 1-33 (146)
129 PF14784 ECIST_Cterm: C-termin 29.5 82 0.0018 24.1 3.6 40 3-42 80-123 (126)
130 PRK04527 argininosuccinate syn 29.4 1E+02 0.0022 28.2 4.8 38 8-47 1-38 (400)
131 PRK15005 universal stress prot 29.4 1.1E+02 0.0023 22.4 4.3 32 9-40 2-37 (144)
132 cd03808 GT1_cap1E_like This fa 29.3 97 0.0021 25.2 4.4 37 11-47 1-39 (359)
133 PRK13011 formyltetrahydrofolat 29.3 80 0.0017 27.3 4.0 40 4-45 84-126 (286)
134 PF02593 dTMP_synthase: Thymid 29.2 1E+02 0.0022 25.8 4.4 61 84-160 49-111 (217)
135 COG3473 Maleate cis-trans isom 28.8 2.5E+02 0.0055 23.6 6.6 66 115-188 112-177 (238)
136 PRK10310 PTS system galactitol 28.5 1.5E+02 0.0032 21.0 4.7 37 8-44 1-40 (94)
137 PRK14731 coaE dephospho-CoA ki 28.3 49 0.0011 26.8 2.4 17 8-24 2-18 (208)
138 COG1654 BirA Biotin operon rep 27.9 53 0.0012 23.0 2.2 20 138-157 33-52 (79)
139 PRK00143 mnmA tRNA-specific 2- 27.9 99 0.0021 27.4 4.4 31 10-42 1-31 (346)
140 PLN00141 Tic62-NAD(P)-related 27.6 78 0.0017 25.9 3.6 19 173-191 204-222 (251)
141 TIGR00420 trmU tRNA (5-methyla 27.3 1.1E+02 0.0024 27.2 4.6 32 10-43 1-32 (352)
142 PRK15456 universal stress prot 27.1 1.4E+02 0.0029 22.0 4.6 34 8-41 1-37 (142)
143 PRK13054 lipid kinase; Reviewe 26.8 1E+02 0.0022 26.4 4.2 46 7-52 1-51 (300)
144 PRK10886 DnaA initiator-associ 26.7 82 0.0018 25.6 3.5 12 86-97 156-167 (196)
145 cd00419 Ferrochelatase_C Ferro 26.5 64 0.0014 24.5 2.6 47 132-186 70-119 (135)
146 PLN02871 UDP-sulfoquinovose:DA 26.4 1.2E+02 0.0027 27.4 4.9 38 7-45 56-101 (465)
147 PF13477 Glyco_trans_4_2: Glyc 26.3 1.4E+02 0.0031 21.5 4.5 35 11-47 1-36 (139)
148 PLN00021 chlorophyllase 26.2 1.3E+02 0.0027 26.3 4.7 37 122-160 51-87 (313)
149 PF00201 UDPGT: UDP-glucoronos 26.0 1.4E+02 0.0031 27.0 5.3 56 114-189 353-409 (500)
150 PF04816 DUF633: Family of unk 25.9 2.4E+02 0.0052 23.1 6.1 60 81-157 61-121 (205)
151 COG0743 Dxr 1-deoxy-D-xylulose 25.9 85 0.0018 28.5 3.6 71 118-194 109-200 (385)
152 COG1856 Uncharacterized homolo 25.9 1.6E+02 0.0034 25.2 4.9 90 87-186 111-214 (275)
153 TIGR00441 gmhA phosphoheptose 25.7 92 0.002 23.9 3.5 14 83-96 120-133 (154)
154 PRK12464 1-deoxy-D-xylulose 5- 25.6 56 0.0012 29.7 2.5 31 13-44 1-31 (383)
155 COG1983 PspC Putative stress-r 25.6 82 0.0018 21.6 2.7 26 7-32 8-35 (70)
156 PLN00200 argininosuccinate syn 25.2 1.4E+02 0.0031 27.3 5.0 37 8-46 4-41 (404)
157 PLN02605 monogalactosyldiacylg 25.1 2.4E+02 0.0052 24.7 6.4 69 82-188 278-346 (382)
158 TIGR00268 conserved hypothetic 25.1 1.3E+02 0.0029 25.1 4.6 32 9-42 12-43 (252)
159 PRK11780 isoprenoid biosynthes 24.6 1.1E+02 0.0023 25.3 3.8 36 10-45 2-43 (217)
160 TIGR00465 ilvC ketol-acid redu 24.5 1.8E+02 0.0038 25.5 5.3 34 8-45 2-36 (314)
161 PF02780 Transketolase_C: Tran 24.3 1.3E+02 0.0027 22.0 3.8 35 7-42 7-42 (124)
162 PRK06988 putative formyltransf 24.1 1.2E+02 0.0027 26.3 4.3 32 10-45 3-35 (312)
163 PRK05647 purN phosphoribosylgl 23.9 1.6E+02 0.0035 23.9 4.7 34 10-45 2-38 (200)
164 PLN02696 1-deoxy-D-xylulose-5- 23.8 88 0.0019 29.1 3.4 35 9-44 58-92 (454)
165 KOG4127 Renal dipeptidase [Pos 23.7 1.2E+02 0.0026 27.6 4.1 59 121-184 265-326 (419)
166 cd01713 PAPS_reductase This do 23.5 97 0.0021 23.1 3.2 37 11-47 1-38 (173)
167 PRK10964 ADP-heptose:LPS hepto 23.5 1.7E+02 0.0038 24.9 5.1 41 11-51 2-46 (322)
168 PF03308 ArgK: ArgK protein; 23.4 1.6E+02 0.0034 25.5 4.6 97 9-128 27-127 (266)
169 COG5017 Uncharacterized conser 23.2 1.7E+02 0.0037 23.1 4.4 41 118-161 81-126 (161)
170 TIGR02193 heptsyl_trn_I lipopo 22.9 1.8E+02 0.0038 24.7 5.0 42 11-52 1-46 (319)
171 cd01995 ExsB ExsB is a transcr 22.9 1.5E+02 0.0033 22.7 4.2 32 11-44 1-32 (169)
172 PF01022 HTH_5: Bacterial regu 22.7 98 0.0021 18.7 2.5 18 137-154 28-45 (47)
173 PRK12745 3-ketoacyl-(acyl-carr 22.6 1E+02 0.0022 24.8 3.3 17 172-188 218-234 (256)
174 PF04122 CW_binding_2: Putativ 22.4 95 0.0021 21.5 2.7 46 107-158 36-81 (92)
175 PF01380 SIS: SIS domain SIS d 22.4 1.3E+02 0.0028 21.5 3.6 37 8-45 52-89 (131)
176 TIGR03649 ergot_EASG ergot alk 22.3 1.1E+02 0.0023 25.5 3.5 29 12-44 3-32 (285)
177 COG1509 KamA Lysine 2,3-aminom 22.2 4.4E+02 0.0095 23.9 7.3 67 78-158 187-255 (369)
178 COG0569 TrkA K+ transport syst 22.1 4.5E+02 0.0097 21.6 11.1 115 11-160 2-122 (225)
179 PF12740 Chlorophyllase2: Chlo 21.8 1.3E+02 0.0028 25.9 3.8 37 123-161 17-53 (259)
180 PLN02695 GDP-D-mannose-3',5'-e 21.8 1.5E+02 0.0031 26.2 4.3 28 15-43 25-53 (370)
181 PLN02896 cinnamyl-alcohol dehy 21.7 1.1E+02 0.0024 26.4 3.6 33 7-43 8-42 (353)
182 COG2084 MmsB 3-hydroxyisobutyr 21.4 5.5E+02 0.012 22.3 10.5 117 11-161 2-123 (286)
183 cd01351 Aconitase Aconitase ca 21.3 93 0.002 28.3 3.0 45 122-175 299-349 (389)
184 cd03801 GT1_YqgM_like This fam 21.3 4.4E+02 0.0095 21.2 7.6 37 82-130 271-307 (374)
185 PF03641 Lysine_decarbox: Poss 21.3 1.4E+02 0.003 22.5 3.6 60 83-153 50-111 (133)
186 cd01986 Alpha_ANH_like Adenine 21.1 1.8E+02 0.0039 20.4 4.0 29 12-42 1-29 (103)
187 COG2355 Zn-dependent dipeptida 21.0 2.1E+02 0.0046 25.3 5.1 62 121-188 182-249 (313)
188 PRK00919 GMP synthase subunit 21.0 1.2E+02 0.0026 26.6 3.5 41 6-47 18-58 (307)
189 PRK13302 putative L-aspartate 20.8 5.2E+02 0.011 21.9 10.9 39 8-47 5-43 (271)
190 KOG3349 Predicted glycosyltran 20.7 1.9E+02 0.0042 23.1 4.3 35 118-156 96-131 (170)
191 PRK10422 lipopolysaccharide co 20.7 1.2E+02 0.0027 26.3 3.6 44 9-52 5-52 (352)
192 KOG2862 Alanine-glyoxylate ami 20.7 1.5E+02 0.0033 26.6 4.1 41 3-47 86-127 (385)
193 PRK07806 short chain dehydroge 20.6 1.4E+02 0.0029 24.0 3.7 25 171-195 211-235 (248)
194 PRK00509 argininosuccinate syn 20.6 1.9E+02 0.0042 26.3 4.9 38 8-47 1-39 (399)
195 PRK05708 2-dehydropantoate 2-r 20.5 1.5E+02 0.0032 25.5 4.1 33 9-44 2-34 (305)
196 PRK12826 3-ketoacyl-(acyl-carr 20.5 1.5E+02 0.0033 23.6 3.9 24 172-195 214-239 (251)
197 PF13439 Glyco_transf_4: Glyco 20.4 1.4E+02 0.0031 21.7 3.6 26 22-47 15-41 (177)
198 COG2910 Putative NADH-flavin r 20.4 1.7E+02 0.0036 24.3 4.0 33 11-47 3-36 (211)
199 KOG1706 Argininosuccinate synt 20.3 1.3E+02 0.0028 27.0 3.5 38 8-47 4-41 (412)
200 PRK08349 hypothetical protein; 20.3 1.8E+02 0.0038 23.3 4.2 31 10-42 1-31 (198)
201 COG1703 ArgK Putative periplas 20.3 75 0.0016 28.1 2.1 41 9-49 49-93 (323)
202 PRK10637 cysG siroheme synthas 20.3 1.4E+02 0.0031 27.4 4.1 35 6-43 9-43 (457)
203 PF13579 Glyco_trans_4_4: Glyc 20.2 1.3E+02 0.0028 21.6 3.2 24 23-46 5-29 (160)
204 PF14359 DUF4406: Domain of un 20.2 3.3E+02 0.0071 19.3 5.4 27 135-161 12-38 (92)
205 COG0299 PurN Folate-dependent 20.1 1.2E+02 0.0027 25.0 3.2 35 10-46 1-38 (200)
206 COG4081 Uncharacterized protei 20.0 95 0.0021 24.1 2.4 27 25-51 21-48 (148)
No 1
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=100.00 E-value=4.2e-60 Score=388.68 Aligned_cols=198 Identities=91% Similarity=1.459 Sum_probs=185.4
Q ss_pred CcccCCCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCcccc
Q 029085 1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLH 80 (199)
Q Consensus 1 ~~~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h 80 (199)
|..|...++|||++|+|||+++||+++++|.|++|++|+|+||++|.+|+++++|+...++|+|.++|+.|+.++++.+|
T Consensus 11 ~~~~~~~~~k~IllgVtGSIAAyk~~~lvr~L~~g~~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~~~~~~~~~H 90 (209)
T PLN02496 11 MEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSWNKIGDSVLH 90 (209)
T ss_pred hhhccCCCCCEEEEEEeCHHHHHHHHHHHHHhcCCCeEEEEEChhHhhhcCHHHcCCCCcEEeCcccccccccCCCCcch
Confidence 34677788999999999999999999999999888999999999999999999997545799998888766666678899
Q ss_pred ccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 029085 81 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 160 (199)
Q Consensus 81 ~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~ 160 (199)
++|.+|||+|||+|||+|||||+|+|||||++++++++++.++|++++|+||+.||+||++|+|+++|+++|++|++|..
T Consensus 91 I~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~ 170 (209)
T PLN02496 91 IELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVT 170 (209)
T ss_pred hHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC
Q 029085 161 KRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 198 (199)
Q Consensus 161 g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~~~~~ 198 (199)
|.+|||+.|.|||++||+|+..+..++..++++|+|-|
T Consensus 171 g~lAcg~~G~Grm~ep~~I~~~i~~~l~~~~~~~~~~~ 208 (209)
T PLN02496 171 KRLACGDYGNGAMAEPSLIYSTVRLFLESRAQSQSGGV 208 (209)
T ss_pred CcccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCC
Confidence 99999999999999999999999999998999988865
No 2
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=100.00 E-value=9.5e-55 Score=352.30 Aligned_cols=176 Identities=36% Similarity=0.494 Sum_probs=162.4
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCccccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRR 85 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l~~ 85 (199)
.|||++|+|||+++++++++++.|++ |++|+|++|++|++|++++.++ ++++++++.+.+. ..++.+|+++.+
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~----~~~~~~hi~l~~ 76 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDVMDEH----DPKLMNHIELAK 76 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHHhCCceEecccccc----ccCCcccccccc
Confidence 37999999999999999999999987 9999999999999999998776 5678988854322 123568999999
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccccc
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLAC 165 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~ 165 (199)
|+|+|||+|||+|||||+|+||+|||+++++.+++.++|++++|+||+.||.||++++|+++|+++|++|++|.+|++||
T Consensus 77 ~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~ 156 (182)
T PRK07313 77 RADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLAC 156 (182)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCcccc
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHhcc
Q 029085 166 GDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 166 g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
|++|+|+|+++|+|++++.+++.
T Consensus 157 ~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 157 GDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCccCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 3
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=2.6e-54 Score=348.25 Aligned_cols=174 Identities=35% Similarity=0.537 Sum_probs=158.5
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCcccccccccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRRW 86 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~ 86 (199)
|||+||+|||+++++++++++.|++ |+||+|++|++|++|++++.++ ++++++++. |+.+ ......|+++++|
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~--~~~~--~~~~~~hi~l~~~ 76 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDV--MDEH--DPKVINHIELAKK 76 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhCCCeEeec--cccc--cCCCcccceechh
Confidence 6899999999999999999999987 9999999999999999988776 567787763 2111 1234679999999
Q ss_pred ccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 029085 87 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 166 (199)
Q Consensus 87 aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~g 166 (199)
+|+|||+|||+|||||+|+||+|||+++++++++.++|++++|+||+.||+||++|+|+++|+++|++|++|..|.+|||
T Consensus 77 aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g 156 (177)
T TIGR02113 77 ADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACG 156 (177)
T ss_pred hCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCC
Confidence 99999999999999999999999999998888888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHhc
Q 029085 167 DYGNGAMAEPSLIYSTVRLFA 187 (199)
Q Consensus 167 ~~g~~~~~~~e~i~~~v~~~~ 187 (199)
++|.|||++||+|++++.+.+
T Consensus 157 ~~g~g~~~~~~~i~~~~~~~~ 177 (177)
T TIGR02113 157 DYGRGALADLDDILQTIKEIL 177 (177)
T ss_pred CccccCCCCHHHHHHHHHHhC
Confidence 999999999999999987653
No 4
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=100.00 E-value=6.5e-51 Score=364.36 Aligned_cols=185 Identities=38% Similarity=0.617 Sum_probs=169.0
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCccccccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
+.+|||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++ ++++|+++. |.. ..+.+.+|+++
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~--~~~--~~~~~~~hi~l 79 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPVSTDL--WDP--AAEAAMGHIEL 79 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhCCceEccc--ccc--ccCCCcchhhc
Confidence 4578999999999999999999999987 9999999999999999999877 677888873 321 12335789999
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 163 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~ 163 (199)
.+|+|+|||+|||+|||||+|+||||||+++++.+. ++|++++|+||+.||+||++++|+++|+++|++|++|.+|++
T Consensus 80 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~--~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~l 157 (399)
T PRK05579 80 AKWADLVLIAPATADLIAKLAHGIADDLLTTTLLAT--TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRL 157 (399)
T ss_pred ccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhc--CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccc
Confidence 999999999999999999999999999999888774 899999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhccCCCCCCCCC
Q 029085 164 ACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK 197 (199)
Q Consensus 164 a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~~~~ 197 (199)
|||++|.||||+||+|++++.+.+..++|+|++-
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~v 191 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRV 191 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEE
Confidence 9999999999999999999999887789999763
No 5
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=7.8e-51 Score=368.82 Aligned_cols=187 Identities=34% Similarity=0.518 Sum_probs=168.9
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCccccc
Q 029085 5 TGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHI 81 (199)
Q Consensus 5 ~~~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~ 81 (199)
..+.+|||++|+|||+++||++++++.|++ |++|+|+||++|++|++++.++ ++++||+|. |.. .....++|+
T Consensus 66 ~~l~~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~--~~~--~~~~~~~Hi 141 (475)
T PRK13982 66 ASLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVYTDL--FDP--ESEFDAGHI 141 (475)
T ss_pred cccCCCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcCCceEecC--CCc--ccccCccch
Confidence 345689999999999999999999999987 9999999999999999998876 678899874 211 112247899
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 161 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g 161 (199)
++.+|+|+|||+|||+|||||+|+||||||+++++++ .++|++++|+||+.||+||++|+|+++|+++|++|++|..|
T Consensus 142 ~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La--~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g 219 (475)
T PRK13982 142 RLARDCDLIVVAPATADLMAKMANGLADDLASAILLA--ANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAG 219 (475)
T ss_pred hhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHh--cCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCC
Confidence 9999999999999999999999999999999988876 58999999999999999999999999999999999999999
Q ss_pred ccc-cCCCCCCCCCChHHHHHHHHHhccC---CCCCCCCC
Q 029085 162 RLA-CGDYGNGAMAEPSLIYSTVRLFAES---RNQSGDGK 197 (199)
Q Consensus 162 ~~a-~g~~g~~~~~~~e~i~~~v~~~~~~---~~l~~~~~ 197 (199)
.+| ||+.|.|||++|++|++++..++.. ++|+|+|-
T Consensus 220 ~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkv 259 (475)
T PRK13982 220 EMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRV 259 (475)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEE
Confidence 999 7999999999999999999988853 68999974
No 6
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-51 Score=327.41 Aligned_cols=186 Identities=55% Similarity=0.883 Sum_probs=174.6
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc--C---CeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCc
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE--W---AEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDS 77 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~--g---~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~ 77 (199)
+.....+.+||+|.|||++++|++.+++.|-+ | ..|+|++|++|..|+..+.+.....+|+|+++|..|+..++|
T Consensus 14 ~~~~d~K~hvL~gaTGSvA~iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~~r~dp 93 (218)
T KOG0672|consen 14 VPQDDGKFHVLLGATGSVAVIKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWKSRSDP 93 (218)
T ss_pred ccCCCCceeEEEEeccccceeehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhhhcCCc
Confidence 44556678999999999999999999999975 4 479999999999999988888778899999999999999999
Q ss_pred cccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHH--CCCEE
Q 029085 78 VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE--LGISL 155 (199)
Q Consensus 78 ~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~--~G~~v 155 (199)
+-|++|.||||+++|||.||||+||+|+||||||+|++++||+..+|++++|+||+.||+||.+++|+..|++ .|+.+
T Consensus 94 VLHIeLRrWADilliAPLsANTlaKiA~GlCDNLLTsviRAW~~skPil~aPaMnT~mw~np~T~~hl~~l~~~~~~~~~ 173 (218)
T KOG0672|consen 94 VLHIELRRWADILLIAPLSANTLAKIANGLCDNLLTSVIRAWDPSKPILLAPAMNTLMWNNPMTKKHLTSLKEEYPGITV 173 (218)
T ss_pred eeeehHhhhhhhheecccCcchHHHHHhhhhhHHHHHHHHHhccCCceEeccchhhhhhcCcchHHHHHHHHHhcCCcEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984 59999
Q ss_pred eCCCCcccccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 156 IPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 156 v~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
++|+.+.+.|||+|.|.|.+|.+|++.|+..+.
T Consensus 174 i~pieK~licGDiGlG~Mae~~~IV~~V~~~~~ 206 (218)
T KOG0672|consen 174 IKPIEKVLICGDIGLGGMAEWGTIVSKVRRKLG 206 (218)
T ss_pred ecchheeEeccccCccccccHHHHHHHHHHHHh
Confidence 999999999999999999999999999986654
No 7
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=2.5e-48 Score=346.64 Aligned_cols=183 Identities=35% Similarity=0.570 Sum_probs=164.1
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCcccccccc
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELR 84 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l~ 84 (199)
.+|||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++ ++++++++. |.. ......|+++.
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~~~~~v~~~~--~~~---~~~~~~hi~l~ 76 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVTEL--WGP---IEHNALHIDLA 76 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHhhCCceeehh--ccc---cccccchhhcc
Confidence 578999999999999999999999987 9999999999999999999776 566787763 321 11112299999
Q ss_pred ccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccc
Q 029085 85 RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLA 164 (199)
Q Consensus 85 ~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a 164 (199)
+|+|+|||+|||+|||||+|+||||||+++++.+. .+|++++|+||+.||+||++++|+++|+++|++|++|.+|++|
T Consensus 77 ~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~--~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~a 154 (390)
T TIGR00521 77 KWADLILIAPATANTISKIAHGIADDLVSTTALAA--SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLA 154 (390)
T ss_pred cccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHh--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccc
Confidence 99999999999999999999999999999887664 3899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChHHHHHHHHHhccC-CCCCCCCC
Q 029085 165 CGDYGNGAMAEPSLIYSTVRLFAES-RNQSGDGK 197 (199)
Q Consensus 165 ~g~~g~~~~~~~e~i~~~v~~~~~~-~~l~~~~~ 197 (199)
||++|.|+|+++|+|++++.+.+.. ++|+|++-
T Consensus 155 c~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~v 188 (390)
T TIGR00521 155 CGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRV 188 (390)
T ss_pred cccccCCCCCCHHHHHHHHHHHHhhccccCCceE
Confidence 9999999999999999999998875 78999873
No 8
>PRK05920 aromatic acid decarboxylase; Validated
Probab=100.00 E-value=1.8e-41 Score=278.50 Aligned_cols=165 Identities=22% Similarity=0.220 Sum_probs=141.7
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCccccccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
+++|||++|+|||++++|++++++.|++ |++|++++|++|++|++++... ++.+++++. .|..+ ......|+++
T Consensus 1 ~~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~~~~~~l~~~~v~~~~-~~~~~--~~~~~~hi~l 77 (204)
T PRK05920 1 SKMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVLATETGLKLPAVPDLAEA-FLREQ--LGAAAGQLRV 77 (204)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHHHhCCCCCCCeeecch-hhhhc--cccccCceeE
Confidence 3678999999999999999999999987 9999999999999999988665 456777664 23211 1123456655
Q ss_pred c-------------ccccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEeccChhhhhChHHHHHHHHHH
Q 029085 84 R-------------RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSID 149 (199)
Q Consensus 84 ~-------------~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~ 149 (199)
. +|+|+|||+|||+|||||+|+|||||++++++ .+++.++|++++|+ .||.||++++|+++|+
T Consensus 78 ~~~~d~~a~~~sgs~~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~---~m~~~~~~~~nl~~L~ 154 (204)
T PRK05920 78 HGKDDWGAPIASGSFRTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPR---ETPLSLIHLENMLKLA 154 (204)
T ss_pred cccccccCccccCccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeC---CCCCCHHHHHHHHHHH
Confidence 3 59999999999999999999999999998765 56678999999997 4889999999999999
Q ss_pred HCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHH
Q 029085 150 ELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 184 (199)
Q Consensus 150 ~~G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~ 184 (199)
+.|+.|++|++|+ |+++.+.|++++|+.
T Consensus 155 ~~G~~ii~P~~g~-------y~~p~~~~~~~~f~~ 182 (204)
T PRK05920 155 EAGAIILPAIPAF-------YHKPQTIDDLVDFVV 182 (204)
T ss_pred HCCCEEeCCcccc-------cCCCCCHHHHHHHHH
Confidence 9999999999999 899999999999884
No 9
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=100.00 E-value=6.6e-42 Score=279.10 Aligned_cols=173 Identities=20% Similarity=0.180 Sum_probs=141.8
Q ss_pred CCCCcEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhchh--------cCC--CCCeeEeCccchhccccC
Q 029085 7 LRKPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKI 74 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A~~fv~~~--------~l~--~~~~v~~~~~~~~~~~~~ 74 (199)
+.+|||++|+|||+++|| ++++++.|++ |++|++++|++|.+|+++. .++ ++++++++..
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls~~~v~~~~~-------- 74 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEEITGNKVINTIV-------- 74 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHHHHCCCcEEecC--------
Confidence 357899999999999999 7999999987 9999999999999998642 122 4566665521
Q ss_pred CCccccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHH-hcCCCcEEEEeccChhhhhChHHHHHHHHHHH-CC
Q 029085 75 GDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE-LG 152 (199)
Q Consensus 75 ~~~~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~-~G 152 (199)
..+|+++.+|+|+|||+|||+|||||+|+|||||++++++.+ ++.++|++++|+||+.||+|| +|+++|++ +|
T Consensus 75 --~~~~isls~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~---~ni~~L~~~~g 149 (196)
T PRK08305 75 --EAEPLGPKKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNA---KNLGRLLNTKN 149 (196)
T ss_pred --CCccCccccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCH---HHHHHHHhcCC
Confidence 146888999999999999999999999999999999887754 688999999999999999997 99999985 89
Q ss_pred CEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhccCCCCCC
Q 029085 153 ISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSG 194 (199)
Q Consensus 153 ~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~ 194 (199)
++|+|= |.-.|+.--++-..+++.+.+++.++++++|||-
T Consensus 150 ~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (196)
T PRK08305 150 IYFVPF--GQDDPVKKPNSLVARMDLLIDTVEEALEGKQLQP 189 (196)
T ss_pred EEEEec--CCCCCCCCchhHHhhHHhhHHHHHHHHhCCcccc
Confidence 999862 1111211123455688899999999999999873
No 10
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=100.00 E-value=4.3e-41 Score=272.71 Aligned_cols=155 Identities=22% Similarity=0.191 Sum_probs=131.8
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEecccHHHHhchhc-C-----CC-CCeeEeCccchhccccCCCcccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAA-L-----PK-DVIFYTDEDEWATWNKIGDSVLH 80 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~T~~A~~fv~~~~-l-----~~-~~~v~~~~~~~~~~~~~~~~~~h 80 (199)
|||++|+|||+++||++++++.|++ |++|+|++|++|.+|++++. + +. ..+++.+.+ ...|
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~~~~~~~~~~~l~~~v~~~~~----------~~~~ 71 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAARQTLAHETDFSLRDVQALADVVHDVRD----------IGAS 71 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHHHCCChhhHHHhcCcccChhh----------cccC
Confidence 6899999999999999999999986 79999999999999999872 1 10 122332211 1135
Q ss_pred cccc-ccccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 81 IELR-RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 81 ~~l~-~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
++.. .|+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+ .||+||++|+|+++|++.|+.|++|
T Consensus 72 i~~~s~~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~---~M~~~p~~~~Nl~~L~~~G~~vi~P 148 (185)
T PRK06029 72 IASGSFGTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR---ETPLHLGHLRNMTKLAEMGAIIMPP 148 (185)
T ss_pred hhhcCchhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec---cccCCHHHHHHHHHHHHCcCEEECC
Confidence 5553 59999999999999999999999999999754 45568999999996 7999999999999999999999999
Q ss_pred CCcccccCCCCCCCCCChHHHHHHHH
Q 029085 159 VSKRLACGDYGNGAMAEPSLIYSTVR 184 (199)
Q Consensus 159 ~~g~~a~g~~g~~~~~~~e~i~~~v~ 184 (199)
.+|+ ++++.+.+|+++++.
T Consensus 149 ~~g~-------~a~p~~~~~~~~~~v 167 (185)
T PRK06029 149 VPAF-------YHRPQTLEDMVDQTV 167 (185)
T ss_pred Cccc-------ccCCCCHHHHHHHHH
Confidence 9999 889999999999885
No 11
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=100.00 E-value=4e-40 Score=266.57 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=130.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhc-C--CCCCeeEeCccchhccccCCCcccccc-ccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA-L--PKDVIFYTDEDEWATWNKIGDSVLHIE-LRR 85 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~-l--~~~~~v~~~~~~~~~~~~~~~~~~h~~-l~~ 85 (199)
||++|+|||+++||++++++.|++ |++|+|++|++|++|++++. + ..-..++++ .|. ..+...|++ ..+
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~e~~~~~~~l~~~~~~--~~~----~~~~~~~i~~~s~ 74 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIKYETDIDPGEVEELATK--YYD----ADDFAAPIASGSF 74 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHHCCCHHHHHHHhhh--hCC----CcccccccccCCc
Confidence 699999999999999999999987 99999999999999998753 1 100011111 110 011235665 368
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccc
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLA 164 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a 164 (199)
|+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+ .||.||++|+|+++|+++|+.|++|.+|+
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~---~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~-- 149 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR---ETPLNSIHLENMLRLSRMGAIILPPMPAF-- 149 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC---CCcCCHHHHHHHHHHHHCCCEEECCCCcc--
Confidence 9999999999999999999999999998764 46678999999996 88999999999999999999999999999
Q ss_pred cCCCCCCCCCChHHHHHHHH
Q 029085 165 CGDYGNGAMAEPSLIYSTVR 184 (199)
Q Consensus 165 ~g~~g~~~~~~~e~i~~~v~ 184 (199)
|+++.++||+++++.
T Consensus 150 -----~~~p~~~~~~~~~i~ 164 (181)
T TIGR00421 150 -----YTRPKSVEDMIDFIV 164 (181)
T ss_pred -----cCCCCCHHHHHHHHH
Confidence 999999999888775
No 12
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-40 Score=294.33 Aligned_cols=182 Identities=38% Similarity=0.569 Sum_probs=165.2
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCC--CCCeeEeCccchhccccCCCccccccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~--~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
+.+|+|+||+|||+++||.+++++.|++ |++|+|+||++|.+|++|+.++ +++++++ .|+ ......++|++|
T Consensus 2 l~~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~s~~~v~t---~~~--~~~~~~~~HI~l 76 (392)
T COG0452 2 LEGKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPVYT---LLD--EELTGSVEHIEL 76 (392)
T ss_pred CCCceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHhhCCCccc---ccc--ccccccccHhhh
Confidence 4567999999999999999999999987 9999999999999999999987 7888888 221 123556899999
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 163 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~ 163 (199)
.+|+|+++|+|||+||++|+|+|++||++++++.++ ..|++++|+||..||+||++|+|+++|+..|+.++.|..+.+
T Consensus 77 ~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~--~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~ 154 (392)
T COG0452 77 ARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGEL 154 (392)
T ss_pred hhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHh--cCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECcccccc
Confidence 999999999999999999999999999998877775 349999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhccCCCCCCCCC
Q 029085 164 ACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK 197 (199)
Q Consensus 164 a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~~~~ 197 (199)
+ +.|.|+|+++++|+..+...+..++|+|++-
T Consensus 155 a--~~g~g~~~e~~~Iv~~~~~~~~~~~l~gk~V 186 (392)
T COG0452 155 A--DVGDGRLAEPEEIVEAALALLKTPDLKGKKV 186 (392)
T ss_pred c--ccccccCCCHHHHHHHHHhhcccccccCcEE
Confidence 8 8999999999999999998887678999874
No 13
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=100.00 E-value=3.4e-39 Score=261.72 Aligned_cols=164 Identities=23% Similarity=0.229 Sum_probs=134.9
Q ss_pred CcEEEEEcChHHHHHHH-HHHHHhhc-CCeEEEEecccHHHHhchh--------cCC--CCCeeEeCccchhccccCCCc
Q 029085 10 PRILLAASGSVAAIKFG-NLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKIGDS 77 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~-~li~~L~~-g~eV~vv~T~~A~~fv~~~--------~l~--~~~~v~~~~~~~~~~~~~~~~ 77 (199)
|||++|+|||+++++.+ ++++.|++ |++|++++|++|.++.+.. .++ ++++++++..++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~~~g~~~~~i~~l~~~tg~~v~~~~~~~--------- 71 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEITGRPAINTIVEA--------- 71 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHHHcCChHHHHHHHHHHHCCCCEEECCCC---------
Confidence 58999999999999997 99999987 9999999999998655531 122 455666553211
Q ss_pred cccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHh-cCCCcEEEEeccChhhhhChHHHHHHHHHH-HCCCEE
Q 029085 78 VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFTERHLMSID-ELGISL 155 (199)
Q Consensus 78 ~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~-~~G~~v 155 (199)
+.++..+|+|+|||+|||+|||||+|+||+||++++++.++ +.++|++++|+||++||+|+ +|+++|. .+|++|
T Consensus 72 -~~~~~s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~---~Ni~~L~~~~g~~~ 147 (187)
T TIGR02852 72 -EPFGPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA---VNLMRLLNTKNIYF 147 (187)
T ss_pred -cccCCchhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH---HHHHHHHHcCCEEE
Confidence 11233579999999999999999999999999999877554 78999999999999999997 9999985 889999
Q ss_pred eC-----CCCcccccCCCCCCCCCChHHHHHHHHHhccCCCCC
Q 029085 156 IP-----PVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS 193 (199)
Q Consensus 156 v~-----P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~ 193 (199)
|| |..+. ++-.++++.|.+++.++++++|+|
T Consensus 148 v~f~qd~~~~k~-------~s~~~~~~~~~~~~~~a~~~~q~q 183 (187)
T TIGR02852 148 VPFGQDDPFKKP-------NSLVAKMDYLIPTIEEALQGRQLQ 183 (187)
T ss_pred EeecCCCCCCCc-------hhHHhhHHhhHHHHHHHHhCCCcC
Confidence 97 33332 455678999999999999999987
No 14
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=100.00 E-value=3.1e-37 Score=236.69 Aligned_cols=127 Identities=49% Similarity=0.744 Sum_probs=108.1
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCcccccccccccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD 88 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~aD 88 (199)
|||+|++|||++++++++++++|++ |+||++++|++|.+|++++. ....+++.+ |..+ ......+|+++.+|+|
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~-~~~~~v~~~---~~~~-~~~~~~~~~~~~~~~D 75 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEG-LTGEPVYTD---WDTW-DRGDPAEHIELSRWAD 75 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHG-HCCSCEECT---HCTC-STTTTTCHHHHHHTES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhc-cccchhhhc---cccC-CCCCCcCcccccccCC
Confidence 6999999999999999999999987 89999999999999999998 445677776 2111 2245678999999999
Q ss_pred EEEEccCCHHHHHHHHhcccCcHHHHHHHHh-cCCCcEEEEeccChhhhhChHH
Q 029085 89 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFT 141 (199)
Q Consensus 89 ~~vVaPaTanTlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~P~mn~~m~~~p~~ 141 (199)
+|||+|||+||+||+|+||+||++++++.++ +.++||+++|+||+.||+||++
T Consensus 76 ~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn~~m~~~p~t 129 (129)
T PF02441_consen 76 AMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMNPAMWENPIT 129 (129)
T ss_dssp EEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEESHHHHTSHHH
T ss_pred EEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCCHHHHhCcCC
Confidence 9999999999999999999999999877554 6799999999999999999975
No 15
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=99.97 E-value=2.2e-30 Score=206.75 Aligned_cols=161 Identities=25% Similarity=0.282 Sum_probs=132.3
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhc--CCCCCeeEeCccchhccccCCCccccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA--LPKDVIFYTDEDEWATWNKIGDSVLHIELRR 85 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~--l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~ 85 (199)
++||++|+||++++.+..++++.|++ ++|+++++|++|++.+..|. ..+-..+..........++++++++++++
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~~~e~hlviS~~a~~~~~~E~~~~~~~~~~~~~a~~~~~~~D~~A~iASGS~-- 79 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKKTLKYETGNDESLGEVLALADVVHDEKDIGAPIASGSF-- 79 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhcCceEEEEEcHHHHHHHHHHhCcchhhHHHhhhcceecCHHHccCcccCCCC--
Confidence 57999999999999999999999997 89999999999999888776 22111111100011112345778888887
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEeccChhhhhChHHHHHHH---HHHHCCCEEeCCCCc
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLM---SIDELGISLIPPVSK 161 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~---~L~~~G~~vv~P~~g 161 (199)
..|.|+|+|||+.|+|++|+|++|||++.++ -+++.++|+|++|+ |.|...-||+ +|.+.|+.|+||.++
T Consensus 80 ~~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~R------EtPl~~ihLeNMlkl~~~GaiI~Pp~Pa 153 (191)
T COG0163 80 RTDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPR------ETPLSLIHLENMLKLAEMGAIIMPPMPA 153 (191)
T ss_pred CcCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEec------cCCccHHHHHHHHHHHHCCCEecCCChh
Confidence 4999999999999999999999999999765 56689999999999 8887776666 478899999999999
Q ss_pred ccccCCCCCCCCCChHHHHHHHH
Q 029085 162 RLACGDYGNGAMAEPSLIYSTVR 184 (199)
Q Consensus 162 ~~a~g~~g~~~~~~~e~i~~~v~ 184 (199)
| |.++.+.||+++++.
T Consensus 154 F-------Y~~P~sieDlvd~~v 169 (191)
T COG0163 154 F-------YHKPQSIEDLVDFVV 169 (191)
T ss_pred h-------hcCCCCHHHHHHHHH
Confidence 9 999999999999885
No 16
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=99.96 E-value=1e-29 Score=204.22 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=109.7
Q ss_pred cEEEEEcChHHH-HHHHHHHHHhh-c-CCeEEEEecccHHHHhchhcC-C--CCCee-EeCccchhccccCCCccccccc
Q 029085 11 RILLAASGSVAA-IKFGNLCHCFS-E-WAEVRAVATKSSLHFIDRAAL-P--KDVIF-YTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 11 ~ill~iTGs~~~-~~~~~li~~L~-~-g~eV~vv~T~~A~~fv~~~~l-~--~~~~v-~~~~~~~~~~~~~~~~~~h~~l 83 (199)
||+||+|||... ...+++++.|+ + |++|+|++|++|.+|++++.+ + ++... +.++.+ +..+ ....|+.+
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~~~~~~l~~~~~~~~~~~~---~~~p-~~sg~~~l 76 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWYKLWDKLENDFPNFRVEIN---ANSP-FLAGQLQM 76 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHHHhHHHHhccCCcccccCC---CCCc-cccCcccc
Confidence 799999999555 44889999996 3 899999999999999998754 2 11111 222111 1111 12467776
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHH-HHHhcCCCcEEEEeccCh------hhhhChHHH--------HHHHHH
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCI-VRAWDYNKPLFVAPAMNT------FMWNNPFTE--------RHLMSI 148 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~-~~a~~~~~Pvvi~P~mn~------~m~~~p~~~--------~nl~~L 148 (199)
. |+|+|+|+|||+||+||+|+||||||++++ +.+++.++|++++|+||. .+..+|.+. +|+++|
T Consensus 77 ~-~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L 155 (174)
T TIGR02699 77 G-KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKL 155 (174)
T ss_pred c-ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHH
Confidence 5 689999999999999999999999999875 467788999999999964 366677777 999999
Q ss_pred HHC-CCEEeC
Q 029085 149 DEL-GISLIP 157 (199)
Q Consensus 149 ~~~-G~~vv~ 157 (199)
+++ |+.|+.
T Consensus 156 ~~~~gv~v~~ 165 (174)
T TIGR02699 156 AQMEGIEILT 165 (174)
T ss_pred hhCCCeEEEC
Confidence 998 999974
No 17
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=99.92 E-value=4.8e-25 Score=184.99 Aligned_cols=117 Identities=21% Similarity=0.306 Sum_probs=92.6
Q ss_pred cEEEEEcChHHH-HHHHHHHHHhhc---CCeEEEEecccHHHHhchhc----CC--CCCeeEeCccchhccccC-CC-cc
Q 029085 11 RILLAASGSVAA-IKFGNLCHCFSE---WAEVRAVATKSSLHFIDRAA----LP--KDVIFYTDEDEWATWNKI-GD-SV 78 (199)
Q Consensus 11 ~ill~iTGs~~~-~~~~~li~~L~~---g~eV~vv~T~~A~~fv~~~~----l~--~~~~v~~~~~~~~~~~~~-~~-~~ 78 (199)
||+||+|||+.+ ++++++++.|++ |+||+|+||++|++|++++. |+ ++.+++++- |..-.+. .. ..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~ 78 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYGLWDDLREISPGGYYEEV--FTESEEGASSPII 78 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhhhHHHHHHHhCCCcchhc--cccccccccCCcc
Confidence 699999996555 799999999975 79999999999999999984 33 456777652 1100011 11 25
Q ss_pred ccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEec
Q 029085 79 LHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPA 130 (199)
Q Consensus 79 ~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~ 130 (199)
.|+++.+ +|+|||+|||+|||||+|+||+||+++..+ .+.+..+|++++|+
T Consensus 79 ~~i~~~~-~D~~vIaPaTantlakiA~GiaD~lit~t~~~~~k~~~pv~~vP~ 130 (234)
T TIGR02700 79 GRFALGK-YDLLIVSPATANTVAKIAHGIADSLVTNAVAQAGKGDVPVWVVPV 130 (234)
T ss_pred ceeeccc-cCEEEEecCChhHHHHHHccccchHHHHHHHHHhccCCCeEEEee
Confidence 6999864 899999999999999999999999998654 55567899999997
No 18
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=99.86 E-value=3.2e-21 Score=151.12 Aligned_cols=153 Identities=19% Similarity=0.243 Sum_probs=113.7
Q ss_pred CCCCCcEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhchhcCCC-----CCeeEeCccchhccccCCC
Q 029085 6 GLRKPRILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDRAALPK-----DVIFYTDEDEWATWNKIGD 76 (199)
Q Consensus 6 ~~~~k~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~~~l~~-----~~~v~~~~~~~~~~~~~~~ 76 (199)
..+++||.||||||..-.. ..++++.+++ +++|.+++|++|.+++..+.|.. ...+..+.. ...
T Consensus 5 ~~~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~YgL~~~l~~~~~~~~~e~~-------ans 77 (187)
T COG1036 5 EKKKKRIAWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKMYGLWDKLEKIFGGLEVEIG-------ANS 77 (187)
T ss_pred ccccceEEEEEeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHHHHHHHHHHHHHcCCeEeecC-------CCC
Confidence 4567799999999977664 7778888875 37999999999999999887541 111222210 112
Q ss_pred c--cccccccccccEEEEccCCHHHHHHHHhcccCcHHHH-HHHHhcCCCcEEEEeccCh--------------hhhhCh
Q 029085 77 S--VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAPAMNT--------------FMWNNP 139 (199)
Q Consensus 77 ~--~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~P~mn~--------------~m~~~p 139 (199)
| ...+++. .+|.++|+|||+||+||+|+||||+|+|. +++|.+...|++++|.-.. .|.-..
T Consensus 78 Pfi~GrlqlG-kYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~ 156 (187)
T COG1036 78 PFIAGRLQLG-KYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRK 156 (187)
T ss_pred Cceecceecc-cccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEecccccCCeEEEcCCCCcEEEEEEee
Confidence 2 2345554 79999999999999999999999999996 4688888899999998543 133444
Q ss_pred HHHHHHHHHHHC-CCEEeCCCCcccccCCCCCCCCCChHHHHHHH
Q 029085 140 FTERHLMSIDEL-GISLIPPVSKRLACGDYGNGAMAEPSLIYSTV 183 (199)
Q Consensus 140 ~~~~nl~~L~~~-G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v 183 (199)
..-+|+++|++. |+.| +.+|++|.+..
T Consensus 157 vDvenv~kl~~megi~V-----------------l~~P~~I~e~f 184 (187)
T COG1036 157 VDVENVEKLAQMEGIEV-----------------LAKPEDILEIF 184 (187)
T ss_pred cchHHHHHHHhccCeEE-----------------ecCHHHHHHHH
Confidence 677899999875 8888 45677887643
No 19
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=98.39 E-value=1.4e-06 Score=72.02 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=59.9
Q ss_pred ccccEEEEccCCHHHHHHHHhcccCcHHHH-HHHHhcCCCcEEEEe-ccChhhhhC--h-----HHHHHHHHHHHCCCEE
Q 029085 85 RWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAP-AMNTFMWNN--P-----FTERHLMSIDELGISL 155 (199)
Q Consensus 85 ~~aD~~vVaPaTanTlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~P-~mn~~m~~~--p-----~~~~nl~~L~~~G~~v 155 (199)
+.+|.++|.=.|.|+++|+|+|++||+.+. ++.++-.++||+++= .+...-|.+ | .++.+.++|+.+|+.|
T Consensus 52 ~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~ 131 (207)
T TIGR02536 52 KLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEF 131 (207)
T ss_pred hcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEE
Confidence 579999999999999999999999999986 458888899999983 222222233 2 4678899999999999
Q ss_pred eCCC
Q 029085 156 IPPV 159 (199)
Q Consensus 156 v~P~ 159 (199)
+...
T Consensus 132 ~~~~ 135 (207)
T TIGR02536 132 IDSE 135 (207)
T ss_pred eccc
Confidence 9863
No 20
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=89.30 E-value=14 Score=32.31 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=82.0
Q ss_pred CCCCcEEEEEcChHHHHH--------HHHHHHHhhc--CCeEEEEecc----cHHHHhchhcCC--CCCeeEeCccchhc
Q 029085 7 LRKPRILLAASGSVAAIK--------FGNLCHCFSE--WAEVRAVATK----SSLHFIDRAALP--KDVIFYTDEDEWAT 70 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~--------~~~li~~L~~--g~eV~vv~T~----~A~~fv~~~~l~--~~~~v~~~~~~~~~ 70 (199)
+.++++.|.|-|....|. ..+.+..+.+ +.++.+..|+ .+...+... +. .+..++.++
T Consensus 144 l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~-~~~~~~~~~~~~~----- 217 (311)
T PF06258_consen 144 LPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALREL-LKDNPGVYIWDGT----- 217 (311)
T ss_pred CCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHh-hcCCCceEEecCC-----
Confidence 457788888888766553 2223333333 3455555544 122222211 21 112234221
Q ss_pred cccCCCccccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHH
Q 029085 71 WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE 150 (199)
Q Consensus 71 ~~~~~~~~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~ 150 (199)
++-...++..++|.++|-+=|.|.++ +|..+++||.+++--. .+.-+++-++.|.+
T Consensus 218 -----~~nPy~~~La~ad~i~VT~DSvSMvs---------------EA~~tG~pV~v~~l~~----~~~r~~r~~~~L~~ 273 (311)
T PF06258_consen 218 -----GENPYLGFLAAADAIVVTEDSVSMVS---------------EAAATGKPVYVLPLPG----RSGRFRRFHQSLEE 273 (311)
T ss_pred -----CCCcHHHHHHhCCEEEEcCccHHHHH---------------HHHHcCCCEEEecCCC----cchHHHHHHHHHHH
Confidence 11124456678999999865555443 5666799999997521 55678889999999
Q ss_pred CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhc
Q 029085 151 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFA 187 (199)
Q Consensus 151 ~G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~ 187 (199)
.|+.-.-.....+.. ..-+-.+-+-+.+.+.|++.+
T Consensus 274 ~g~~r~~~~~~~~~~-~~~~~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 274 RGAVRPFTGWRDLEQ-WTPYEPLDETDRVAAEIRERL 309 (311)
T ss_pred CCCEEECCCcccccc-cccCCCccHHHHHHHHHHHHh
Confidence 988643222111110 111444555667777776644
No 21
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=84.66 E-value=2.4 Score=31.51 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=33.6
Q ss_pred EEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhchhcCC
Q 029085 12 ILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP 56 (199)
Q Consensus 12 ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~ 56 (199)
|++...|+.+=.. .+.+.+.|++ |+||.+..++.-.+.+....++
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~ 47 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLE 47 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-E
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCce
Confidence 5677777777666 8889999986 9999988888888888655443
No 22
>PRK10116 universal stress protein UspC; Provisional
Probab=84.10 E-value=15 Score=27.19 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=26.6
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEE
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 41 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv 41 (199)
+-+|||+++.+|....++++....|. + +.+++++
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLI 37 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 45799999999999888888776664 3 6677765
No 23
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=84.04 E-value=9.4 Score=34.59 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHh---hcCCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCccccccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCF---SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L---~~g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
...++++...-||.... .++++.. ..+.+++++++-.+.+- +...+.. .++.. +..++.++
T Consensus 234 ~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~~-~~~~~p~--n~~v~-----------~~~p~~~~ 297 (406)
T COG1819 234 PADRPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGARD-TLVNVPD--NVIVA-----------DYVPQLEL 297 (406)
T ss_pred cCCCCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEecccccc-ccccCCC--ceEEe-----------cCCCHHHH
Confidence 34566777767777644 3444333 23578888888644221 1111111 11111 12456677
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 163 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~ 163 (199)
.+.+|++|- ||=+.+.. .|+..++|+|++|.. ++.+ .|-+++.+.|+=+.=+.
T Consensus 298 l~~ad~vI~------------hGG~gtt~----eaL~~gvP~vv~P~~----~DQ~---~nA~rve~~G~G~~l~~---- 350 (406)
T COG1819 298 LPRADAVIH------------HGGAGTTS----EALYAGVPLVVIPDG----ADQP---LNAERVEELGAGIALPF---- 350 (406)
T ss_pred hhhcCEEEe------------cCCcchHH----HHHHcCCCEEEecCC----cchh---HHHHHHHHcCCceecCc----
Confidence 778888763 33232222 233358999999985 4545 45567777766543331
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhccC
Q 029085 164 ACGDYGNGAMAEPSLIYSTVRLFAES 189 (199)
Q Consensus 164 a~g~~g~~~~~~~e~i~~~v~~~~~~ 189 (199)
...+.+.+.+.|.+.+.+
T Consensus 351 --------~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 351 --------EELTEERLRAAVNEVLAD 368 (406)
T ss_pred --------ccCCHHHHHHHHHHHhcC
Confidence 133556666777666654
No 24
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=80.95 E-value=24 Score=30.81 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcChHHHHH-----HHHHHHHhh----c-CCeEEEEecccHHHHhchh---cCCCC-CeeEeCccchhccc
Q 029085 7 LRKPRILLAASGSVAAIK-----FGNLCHCFS----E-WAEVRAVATKSSLHFIDRA---ALPKD-VIFYTDEDEWATWN 72 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~-----~~~li~~L~----~-g~eV~vv~T~~A~~fv~~~---~l~~~-~~v~~~~~~~~~~~ 72 (199)
..+.++.|.+.|...++- +.++.+.|. + |+.+-+..|+--..-+... .+.+. ..+|...
T Consensus 159 ~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~------- 231 (329)
T COG3660 159 LPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNE------- 231 (329)
T ss_pred CCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCC-------
Confidence 346678888888766542 344444443 2 5666666665332222111 12111 1222221
Q ss_pred cCCCccccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCC
Q 029085 73 KIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 152 (199)
Q Consensus 73 ~~~~~~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G 152 (199)
+ .++-+-++...|||.+|+. +|+. +++++|+.++|||.++=.-|.+...+. .-+++|.+.+
T Consensus 232 d-~g~NPY~~~La~Adyii~T--------------aDSi-nM~sEAasTgkPv~~~~~~~~~s~K~r---~Fi~~L~eq~ 292 (329)
T COG3660 232 D-TGYNPYIDMLAAADYIIST--------------ADSI-NMCSEAASTGKPVFILEPPNFNSLKFR---IFIEQLVEQK 292 (329)
T ss_pred C-CCCCchHHHHhhcceEEEe--------------cchh-hhhHHHhccCCCeEEEecCCcchHHHH---HHHHHHHHhh
Confidence 1 1223556777799999986 4432 223366668999998865555444444 4445554432
Q ss_pred CEEeCCCCcc-cccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 153 ISLIPPVSKR-LACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 153 ~~vv~P~~g~-~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
+. -|-.|. ++--+.-|--+-+-|.|.+.|+..+.
T Consensus 293 ~A--R~f~~~~~~~e~ysy~PLnEt~RiA~~Ira~l~ 327 (329)
T COG3660 293 IA--RPFEGSNLALEEYSYKPLNETERIAEEIRAELG 327 (329)
T ss_pred hc--cccCcchhhhcccccCCchHHHHHHHHHHHHhC
Confidence 21 111110 01011223345566788888887664
No 25
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=80.88 E-value=7.4 Score=28.79 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=54.4
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCccccccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 87 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~a 87 (199)
-||||++-.|-+ +.+.++.+++ |++..++-|+.-. ...|.+. +
T Consensus 2 ikkvLIanrGei----a~r~~ra~r~~Gi~tv~v~s~~d~-----------------------------~s~~~~~---a 45 (110)
T PF00289_consen 2 IKKVLIANRGEI----AVRIIRALRELGIETVAVNSNPDT-----------------------------VSTHVDM---A 45 (110)
T ss_dssp SSEEEESS-HHH----HHHHHHHHHHTTSEEEEEEEGGGT-----------------------------TGHHHHH---S
T ss_pred CCEEEEECCCHH----HHHHHHHHHHhCCcceeccCchhc-----------------------------ccccccc---c
Confidence 478888877766 4467777776 8888777775311 1123332 6
Q ss_pred cEEEEcc--------CCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCC
Q 029085 88 DIMVIAP--------LSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 159 (199)
Q Consensus 88 D~~vVaP--------aTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~ 159 (199)
|-.+..| .+...|-+++ + ......+.|- -+.+-+++.+.+.+ .+.|+.|++|.
T Consensus 46 d~~~~~~~~~~~~~yl~~e~I~~ia------------~---~~g~~~i~pG-yg~lse~~~fa~~~---~~~gi~fiGp~ 106 (110)
T PF00289_consen 46 DEAYFEPPGPSPESYLNIEAIIDIA------------R---KEGADAIHPG-YGFLSENAEFAEAC---EDAGIIFIGPS 106 (110)
T ss_dssp SEEEEEESSSGGGTTTSHHHHHHHH------------H---HTTESEEEST-SSTTTTHHHHHHHH---HHTT-EESSS-
T ss_pred ccceecCcchhhhhhccHHHHhhHh------------h---hhcCcccccc-cchhHHHHHHHHHH---HHCCCEEECcC
Confidence 6666666 4443333322 1 1234556665 33445666555444 47999999986
Q ss_pred C
Q 029085 160 S 160 (199)
Q Consensus 160 ~ 160 (199)
+
T Consensus 107 ~ 107 (110)
T PF00289_consen 107 P 107 (110)
T ss_dssp H
T ss_pred h
Confidence 4
No 26
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.27 E-value=32 Score=27.89 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=26.0
Q ss_pred CCcEEEEeccChhhhhChHH-HHHHHHHHHCCCEEeCC
Q 029085 122 NKPLFVAPAMNTFMWNNPFT-ERHLMSIDELGISLIPP 158 (199)
Q Consensus 122 ~~Pvvi~P~mn~~m~~~p~~-~~nl~~L~~~G~~vv~P 158 (199)
+.++|+--+ .+|.+ .++-+.|++.|+.++|-
T Consensus 107 ~~~~v~~~A------N~~~~~~~~~~~L~~~Gi~~~Pd 138 (200)
T cd01075 107 KAKAIAGAA------NNQLADPRHGQMLHERGILYAPD 138 (200)
T ss_pred CCCEEEECC------cCccCCHhHHHHHHHCCCEEeCc
Confidence 568888887 67777 78999999999999983
No 27
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=75.79 E-value=29 Score=25.44 Aligned_cols=54 Identities=22% Similarity=0.165 Sum_probs=35.1
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHH-HHHHHHHCC
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTER-HLMSIDELG 152 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~-nl~~L~~~G 152 (199)
.+|++++.|=...-+.++.... .++||++.+...-++..-+.+.. -++.+++++
T Consensus 50 ~~DviLl~Pqi~~~~~~i~~~~-------------~~~pV~~I~~~~Yg~~dg~~vl~~a~~~~~~~~ 104 (106)
T PRK10499 50 NADVVLLGPQIAYMLPEIQRLL-------------PNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAA 104 (106)
T ss_pred CCCEEEECHHHHHHHHHHHhhc-------------CCCCEEEEChHhhhcCCHHHHHHHHHHHHHHhc
Confidence 5899999999888777654321 13699988876666555554443 344456554
No 28
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=72.75 E-value=8.3 Score=33.25 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=33.8
Q ss_pred cEEEEEcChH--HHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcC
Q 029085 11 RILLAASGSV--AAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAAL 55 (199)
Q Consensus 11 ~ill~iTGs~--~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l 55 (199)
||+++++|-. .+..+..+++.|++|+||.++.|..+..++....+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~g~ev~~~~~~~~~~~~~~~~~ 47 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKNDYEVSYIASGRSKNYISKYGF 47 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhCCCeEEEEEcCCHHHhhhhhcC
Confidence 5677666544 56678889999877999999999887777765533
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=71.28 E-value=6 Score=33.55 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred CcEEEEEcChH--HHHHHHHHHHHhhcCCeEEEEecccHHHHhchh
Q 029085 10 PRILLAASGSV--AAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRA 53 (199)
Q Consensus 10 k~ill~iTGs~--~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~ 53 (199)
+||++.++|.. .+.+...+++.| +|+||.++....+.+|+.+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-rg~~v~~~~~~~~~~~~~~~ 45 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-RGHEVTFITSGPAPEFLKPR 45 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-ccCceEEEEcCCcHHHhccc
Confidence 47888887643 445688899999 68999999999888888764
No 30
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=70.80 E-value=10 Score=26.85 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEE
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 41 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv 41 (199)
|-+||++++.|+.....++++...+. . +.+|.++
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l 36 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLL 36 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 45899999999999999888776664 3 6776654
No 31
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=69.85 E-value=33 Score=24.53 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=23.4
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccC
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMN 132 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn 132 (199)
.+|++++.|=...-..++.. .+-..++||...|.+.
T Consensus 50 ~~Dvill~pqi~~~~~~i~~-----------~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 50 DADVVLLAPQVAYMLPDLKK-----------ETDKKGIPVEVINGAQ 85 (95)
T ss_pred CCCEEEECchHHHHHHHHHH-----------HhhhcCCCEEEeChhh
Confidence 47999999987776655432 1112467888876543
No 32
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=69.25 E-value=14 Score=31.21 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHH
Q 029085 117 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRL 185 (199)
Q Consensus 117 ~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~ 185 (199)
+++-.++|++++|..+ ..|.. .|.+.|++.|+-++-+... .+++.+.+++.+
T Consensus 265 Ea~~~g~P~l~ip~~~--~~EQ~---~~a~~l~~~G~~~~~~~~~------------~~~~~l~~~l~~ 316 (318)
T PF13528_consen 265 EALALGKPALVIPRPG--QDEQE---YNARKLEELGLGIVLSQED------------LTPERLAEFLER 316 (318)
T ss_pred HHHHcCCCEEEEeCCC--CchHH---HHHHHHHHCCCeEEccccc------------CCHHHHHHHHhc
Confidence 4444699999999842 23333 5677899998886533222 255666666653
No 33
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=68.83 E-value=9.4 Score=30.24 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEe
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 42 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~ 42 (199)
||+||+|||....-.+.++..+++ +.++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~ 34 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVH 34 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 689999999999988888888875 56777765
No 34
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=67.92 E-value=91 Score=27.87 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc----CCeEEEEecccHH-HHhchhcCCCCCeeEeCccchhccccCCCccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATKSSL-HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~----g~eV~vv~T~~A~-~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
+++.++.+.||.++..+-+++..+.. .+.|....-++.. +....+. +.+. +... .+ .+..+ .+
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~-~~~~-~~v~--~f------~~dm~--~~ 249 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYN-ELGV-VRVL--PF------IDDMA--AL 249 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHh-hcCc-EEEe--eH------HhhHH--HH
Confidence 46777778899999888887777642 2344444333321 1111110 0111 1111 00 00111 34
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHH-HHHHHHHCCCEEeCCCCcc
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTER-HLMSIDELGISLIPPVSKR 162 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~-nl~~L~~~G~~vv~P~~g~ 162 (199)
..|+|++|-= +=++|++- ..-.++|.|++|.-+.. - --|. |-+.|.+.|.-.+=+...
T Consensus 250 ~~~ADLvIsR-aGa~Ti~E---------------~~a~g~P~IliP~p~~~-~---~~Q~~NA~~l~~~gaa~~i~~~~- 308 (357)
T COG0707 250 LAAADLVISR-AGALTIAE---------------LLALGVPAILVPYPPGA-D---GHQEYNAKFLEKAGAALVIRQSE- 308 (357)
T ss_pred HHhccEEEeC-CcccHHHH---------------HHHhCCCEEEeCCCCCc-c---chHHHHHHHHHhCCCEEEecccc-
Confidence 5678887654 33444433 22258999999984331 0 1233 777788876554433221
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 163 LACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 163 ~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
-++|++.+.+..++.
T Consensus 309 -----------lt~~~l~~~i~~l~~ 323 (357)
T COG0707 309 -----------LTPEKLAELILRLLS 323 (357)
T ss_pred -----------CCHHHHHHHHHHHhc
Confidence 257777777776664
No 35
>PRK10537 voltage-gated potassium channel; Provisional
Probab=67.80 E-value=65 Score=29.20 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCccccccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 87 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~a 87 (199)
+.++++|-.|..+- .+++.|++ +.++.++-.+..+ +..+.+..++.++.. +. +...... .+.|
T Consensus 240 k~HvII~G~g~lg~----~v~~~L~~~g~~vvVId~d~~~-----~~~~~g~~vI~GD~t-----d~-e~L~~Ag-I~~A 303 (393)
T PRK10537 240 KDHFIICGHSPLAI----NTYLGLRQRGQAVTVIVPLGLE-----HRLPDDADLIPGDSS-----DS-AVLKKAG-AARA 303 (393)
T ss_pred CCeEEEECCChHHH----HHHHHHHHCCCCEEEEECchhh-----hhccCCCcEEEeCCC-----CH-HHHHhcC-cccC
Confidence 44576666665543 36667765 7888777654211 122234444443210 00 0011112 2368
Q ss_pred cEEEEccCCHHHHHHHHhcccCcHHHH-HHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCE-EeCCC
Q 029085 88 DIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGIS-LIPPV 159 (199)
Q Consensus 88 D~~vVaPaTanTlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~-vv~P~ 159 (199)
+.+++..-. -++|+... .++....+.++++.- +++ +|.++|++.|+. ++.|.
T Consensus 304 ~aVI~~t~d----------D~~Nl~ivL~ar~l~p~~kIIa~v-------~~~---~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 304 RAILALRDN----------DADNAFVVLAAKEMSSDVKTVAAV-------NDS---KNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred CEEEEcCCC----------hHHHHHHHHHHHHhCCCCcEEEEE-------CCH---HHHHHHHhcCCCEEECHH
Confidence 888875432 12333322 234443345565543 345 889999999885 56664
No 36
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=65.55 E-value=42 Score=29.39 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred ccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 79 LHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 79 ~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
+|..+.+.+|++|-- |=+. ++.+++..++|+|++|... +.+ .|-+.+.+.|+-+.-.
T Consensus 297 p~~~ll~~~d~~I~h------------gG~~----t~~eal~~GvP~v~~P~~~----dQ~---~~a~~~~~~G~g~~l~ 353 (401)
T cd03784 297 PHDWLLPRCAAVVHH------------GGAG----TTAAALRAGVPQLVVPFFG----DQP---FWAARVAELGAGPALD 353 (401)
T ss_pred CHHHHhhhhheeeec------------CCch----hHHHHHHcCCCEEeeCCCC----CcH---HHHHHHHHCCCCCCCC
Confidence 344566678888722 2222 2234444689999999853 333 4666777777543322
Q ss_pred CCcccccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 159 VSKRLACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 159 ~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
. .. .+.++|.+.+...+.
T Consensus 354 ~-----------~~-~~~~~l~~al~~~l~ 371 (401)
T cd03784 354 P-----------RE-LTAERLAAALRRLLD 371 (401)
T ss_pred c-----------cc-CCHHHHHHHHHHHhC
Confidence 1 11 366777777766654
No 37
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=65.25 E-value=15 Score=30.65 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 122 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 122 ~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
+.++|+=.+ .+|.+.+.-+.|++.|+.++|-
T Consensus 128 ~a~~I~egA------N~~~t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 128 KAKIIVEAA------NGPTTPEADEILHERGVLVVPD 158 (227)
T ss_pred eeeEEEeCC------CCCCCHHHHHHHHHCCCEEECh
Confidence 568888888 7788878888899999999984
No 38
>PRK09982 universal stress protein UspD; Provisional
Probab=61.93 E-value=14 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEE
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 41 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv 41 (199)
+-||||+++-||..+.++++....+. + +.+++++
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLI 37 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEE
Confidence 45799999999999999888776664 3 6676654
No 39
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=60.56 E-value=15 Score=32.22 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=36.0
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhchhcCC
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP 56 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~ 56 (199)
||++...|+.+=.. .+.+.+.|++ |++|.++.++.-..++....++
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~ 49 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLE 49 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCc
Confidence 78887777766554 8889999975 9999999999877777765543
No 40
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=60.35 E-value=76 Score=27.58 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=19.4
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
|-+++|+||+.+.. +++.|.+ +++...-+++.
T Consensus 10 ~~~v~~~~~~~g~~----~l~~l~~~g~~~v~pVnp~ 42 (291)
T PRK05678 10 KVIVQGITGKQGTF----HTEQMLAYGTNIVGGVTPG 42 (291)
T ss_pred eEEEeCCCchHHHH----HHHHHHHCCCCEEEEECCC
Confidence 36899999998875 4444444 56522234544
No 41
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=59.12 E-value=22 Score=30.60 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=44.3
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe-CCCC
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI-PPVS 160 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv-~P~~ 160 (199)
++...+|+++... | ..++++++..++|+|+.|.-.. .+.....+-+.+.+.|.-++ ++.
T Consensus 248 ~~~~~~d~~i~~~-----------g-----~~~~~Ea~~~g~Pvv~~~~~~~---~~~~~~~~~~~i~~~~~g~~~~~~- 307 (357)
T PRK00726 248 AAYAAADLVICRA-----------G-----ASTVAELAAAGLPAILVPLPHA---ADDHQTANARALVDAGAALLIPQS- 307 (357)
T ss_pred HHHHhCCEEEECC-----------C-----HHHHHHHHHhCCCEEEecCCCC---CcCcHHHHHHHHHHCCCEEEEEcc-
Confidence 4556799988622 2 1234466667999999986110 01111234456666665433 321
Q ss_pred cccccCCCCCCCCCChHHHHHHHHHhccCC
Q 029085 161 KRLACGDYGNGAMAEPSLIYSTVRLFAESR 190 (199)
Q Consensus 161 g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~ 190 (199)
..+++++.+.+...++++
T Consensus 308 ------------~~~~~~l~~~i~~ll~~~ 325 (357)
T PRK00726 308 ------------DLTPEKLAEKLLELLSDP 325 (357)
T ss_pred ------------cCCHHHHHHHHHHHHcCH
Confidence 125788888888777653
No 42
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=57.84 E-value=18 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=26.7
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEeccc
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~ 45 (199)
||++.++|..+... +.++++.|++ |+||+++-.+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCC
Confidence 78887777766665 3589999986 99999996544
No 43
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=56.67 E-value=1.4e+02 Score=26.48 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=31.6
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeC
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIP 157 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~ 157 (199)
++...+|++|.-| .|+ ++.+|+-.++|+|+....+.+ -..|-..+.+.|+-++.
T Consensus 269 ~~~~~aDl~I~k~----------gg~------tl~EA~a~G~PvI~~~~~pgq------e~~N~~~~~~~G~g~~~ 322 (391)
T PRK13608 269 EWMASSQLMITKP----------GGI------TISEGLARCIPMIFLNPAPGQ------ELENALYFEEKGFGKIA 322 (391)
T ss_pred HHHHhhhEEEeCC----------chH------HHHHHHHhCCCEEECCCCCCc------chhHHHHHHhCCcEEEe
Confidence 3456799998522 121 244566578999998322211 12566667777776653
No 44
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=54.33 E-value=46 Score=26.13 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=26.2
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEec
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 130 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~ 130 (199)
...+|++|+.|.-..|+.-+.. ++..+||+++++.
T Consensus 89 ~~~sda~IvlpGG~GTL~E~~~------------a~~~~kpv~~l~~ 123 (159)
T TIGR00725 89 VRSADVVVSVGGGYGTAIEILG------------AYALGGPVVVLRG 123 (159)
T ss_pred HHHCCEEEEcCCchhHHHHHHH------------HHHcCCCEEEEEC
Confidence 4569999999988877765443 3335899999975
No 45
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=54.05 E-value=15 Score=33.27 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=38.3
Q ss_pred CCcEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhchhc
Q 029085 9 KPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAA 54 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~ 54 (199)
++||++.++|+-+-.. ...+.++|++ |+||+...++...+++....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag 48 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG 48 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC
Confidence 4689999999854443 7778898986 99999999999999998776
No 46
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=53.73 E-value=16 Score=26.22 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
..+++++|.-.|..+..|+. .|.+ |++|+|+-.+.
T Consensus 5 l~~~~vlVvGgG~va~~k~~----~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKAR----LLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHH----HHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHH----HHHhCCCEEEEECCch
Confidence 46788888888888876643 4443 89999998875
No 47
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=53.32 E-value=99 Score=25.52 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=27.0
Q ss_pred CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
.+.++|+-.+ .+|.+.++-+.|++.|+.++|-
T Consensus 118 l~a~~V~e~A------N~p~t~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 118 LKAKVVAEGA------NNPTTDEALRILHERGIVVAPD 149 (217)
T ss_pred cCccEEEeCC------CCCCCHHHHHHHHHCCcEEECh
Confidence 3579999888 7888888889999999888874
No 48
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=53.32 E-value=1.4e+02 Score=30.64 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCcEEEEEcChHHH-------HHHHHHHHHhhc-CCeEEEEecccH
Q 029085 8 RKPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 8 ~~k~ill~iTGs~~~-------~~~~~li~~L~~-g~eV~vv~T~~A 46 (199)
..||||+.-+|.+.. +..-++++.|++ |++|.++=+..+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~ 52 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPA 52 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcc
Confidence 356888888887643 335578888986 898877765543
No 49
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=53.13 E-value=25 Score=27.71 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=26.6
Q ss_pred cEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEEecc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVATK 44 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv~T~ 44 (199)
||++++|||....-+..++..+. . +.++.++.=+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 68999999999998888887764 3 6777776533
No 50
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=53.06 E-value=23 Score=30.12 Aligned_cols=36 Identities=36% Similarity=0.311 Sum_probs=28.3
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccH
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A 46 (199)
||++..+|..+... +..+.+.|.+ |+||.++.+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 57888888777776 6688999986 999998876543
No 51
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=53.05 E-value=59 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=23.3
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEecccH
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKSS 46 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~A 46 (199)
++|++...|+-..-....+++.|.+ .+++.+++.++.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~ 210 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSN 210 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCC
Confidence 5687776666554334556666643 578888887643
No 52
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=52.65 E-value=25 Score=29.79 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=27.4
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
+.+|+||+|||....-.+.++..+.+.+++.++.-+
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd 56 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVD 56 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEec
Confidence 479999999999999888888877532566655533
No 53
>PLN02828 formyltetrahydrofolate deformylase
Probab=52.24 E-value=26 Score=30.17 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=32.4
Q ss_pred cccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEeccc
Q 029085 2 QVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 45 (199)
Q Consensus 2 ~~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~ 45 (199)
++.....++||++.+||+..++. .++...+. .+||.+|+|..
T Consensus 63 ~~~~~~~~~riavlvSg~g~nl~--~ll~~~~~g~l~~eI~~ViSn~ 107 (268)
T PLN02828 63 RVPGLDPKYKIAVLASKQDHCLI--DLLHRWQDGRLPVDITCVISNH 107 (268)
T ss_pred EEccCCCCcEEEEEEcCCChhHH--HHHHhhhcCCCCceEEEEEeCC
Confidence 44555678899999999998876 56666654 47999999975
No 54
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.99 E-value=84 Score=22.33 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=24.5
Q ss_pred ccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEec
Q 029085 85 RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 130 (199)
Q Consensus 85 ~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~ 130 (199)
..+|+++++|-.+.-..++.. .+...++||.+.|.
T Consensus 45 ~~~Diil~~Pqv~~~~~~i~~-----------~~~~~~~pv~~I~~ 79 (96)
T cd05564 45 DDADVVLLGPQVRYMLDEVKK-----------KAAEYGIPVAVIDM 79 (96)
T ss_pred CCCCEEEEChhHHHHHHHHHH-----------HhccCCCcEEEcCh
Confidence 358999999998877766432 11235789988876
No 55
>PLN02735 carbamoyl-phosphate synthase
Probab=51.33 E-value=79 Score=32.65 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCcEEEEEcChHHH-------HHHHHHHHHhhc-CCeEEEEecc
Q 029085 9 KPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~-------~~~~~li~~L~~-g~eV~vv~T~ 44 (199)
.||||+.-+|.+.. |...++++.|++ |++|.++=+.
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~n 66 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSN 66 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCC
Confidence 46898888887533 235568888886 8887776544
No 56
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=51.26 E-value=31 Score=28.96 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=29.1
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhh-cC---CeEEEEecccHHHHhc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFS-EW---AEVRAVATKSSLHFID 51 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~-~g---~eV~vv~T~~A~~fv~ 51 (199)
+|+||++.+|.....-. +-+-.|. +| -||+|+-|+++..-..
T Consensus 1 mk~iLlatlG~sPqVVT-ETL~aL~~~g~~p~EV~vitT~~~~~~~~ 46 (224)
T PF09623_consen 1 MKNILLATLGTSPQVVT-ETLYALAQQGEIPDEVHVITTRDGAVRAA 46 (224)
T ss_pred CceEEEEecCCCchHHH-HHHHHHHcCCCCCCEEEEEECCChHHHHH
Confidence 47999999999877643 3333443 33 4999999998875443
No 57
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=50.97 E-value=36 Score=24.12 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=29.2
Q ss_pred CcEEEEEc----ChHHHHHHHHHHHHhhc-C---CeEEEEecccHHHHhch
Q 029085 10 PRILLAAS----GSVAAIKFGNLCHCFSE-W---AEVRAVATKSSLHFIDR 52 (199)
Q Consensus 10 k~ill~iT----Gs~~~~~~~~li~~L~~-g---~eV~vv~T~~A~~fv~~ 52 (199)
|++++.+| ++........+.+.+.. + .+|.++++..|.+++..
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHh
Confidence 57888888 55545555555554443 7 99999999999888775
No 58
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=50.54 E-value=16 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=23.8
Q ss_pred EEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 12 ILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 12 ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
.++|.|||++.- ++++++...+.++|..+...
T Consensus 2 ~ILGsTGSIG~q-tLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 2 AILGSTGSIGTQ-TLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEESTTSHHHHH-HHHHHHHCTTTEEEEEEEES
T ss_pred EEEcCCcHHHHH-HHHHHHhCCCceEEEEEEcC
Confidence 478899998865 78888888766677655544
No 59
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=50.42 E-value=28 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=27.9
Q ss_pred CcEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEeccc
Q 029085 10 PRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 10 k~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~ 45 (199)
+||++...|..+... ..++.+.|++ |+||.++..+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 478888776666665 6789999986 99999987655
No 60
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=48.81 E-value=36 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc----CCeEEEEe
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE----WAEVRAVA 42 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~----g~eV~vv~ 42 (199)
.+.+|+|++|||....-.+.++..+++ +.+|.++-
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~ 66 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVN 66 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 467999999999999888888887763 24666555
No 61
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=48.70 E-value=21 Score=33.50 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=44.1
Q ss_pred cHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe---CCCCcccccCCCCCCCCCChHHHHHHHHHh
Q 029085 110 NLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI---PPVSKRLACGDYGNGAMAEPSLIYSTVRLF 186 (199)
Q Consensus 110 nllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv---~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~ 186 (199)
|++|....|.-++.||++.|.---.--.-..+.+++|+-.+-.+..= .|++.. -.|...||.|+..+..+
T Consensus 97 NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRY-------fDRItRPEQl~sal~rA 169 (617)
T COG3962 97 NMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRY-------FDRITRPEQLMSALPRA 169 (617)
T ss_pred HHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHH-------hhhcCCHHHHHHHHHHH
Confidence 66776666666789999999821111111135566766544444432 355543 36888999999888766
Q ss_pred cc
Q 029085 187 AE 188 (199)
Q Consensus 187 ~~ 188 (199)
++
T Consensus 170 ~~ 171 (617)
T COG3962 170 MR 171 (617)
T ss_pred HH
Confidence 53
No 62
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=48.28 E-value=24 Score=32.05 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
++-.++|.|||++.. ++++++...+.++|..+.-.
T Consensus 2 k~i~IlGsTGSIG~q-tL~Vi~~~~~~f~v~~Laa~ 36 (389)
T TIGR00243 2 KQIVILGSTGSIGKS-TLDVVRHNPDHFQVVALSAG 36 (389)
T ss_pred ceEEEEecChHHHHH-HHHHHHhCccccEEEEEEcC
Confidence 456788999999876 67888876666788776643
No 63
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.66 E-value=1.3e+02 Score=23.19 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=58.0
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhh-cCCeEEEEe-cccH-HHHhchhcCCCCCeeEeCccchhccccCCCcccccccccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVA-TKSS-LHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRW 86 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~-~g~eV~vv~-T~~A-~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~ 86 (199)
+||.|.-.|..+.. +.+.|. +|++|.++= +++. .+|... +.....+ + -++.+.
T Consensus 2 ~~Ig~IGlG~mG~~----~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----g~~~~~s------------~---~e~~~~ 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSA----MARNLAKAGYEVTVYDRSPEKAEALAEA-----GAEVADS------------P---AEAAEQ 57 (163)
T ss_dssp BEEEEE--SHHHHH----HHHHHHHTTTEEEEEESSHHHHHHHHHT-----TEEEESS------------H---HHHHHH
T ss_pred CEEEEEchHHHHHH----HHHHHHhcCCeEEeeccchhhhhhhHHh-----hhhhhhh------------h---hhHhhc
Confidence 47888888888876 444444 389998773 3322 344331 1111111 1 134567
Q ss_pred ccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHH-HHHHCCCEEeC-CCCc
Q 029085 87 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLM-SIDELGISLIP-PVSK 161 (199)
Q Consensus 87 aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~-~L~~~G~~vv~-P~~g 161 (199)
+|+++++=....-+-.+..|- +++. .+ ...-+++- +++ .+|...+.+. .+++.|+.+++ |+.|
T Consensus 58 ~dvvi~~v~~~~~v~~v~~~~--~i~~----~l--~~g~iiid-~sT---~~p~~~~~~~~~~~~~g~~~vdapV~G 122 (163)
T PF03446_consen 58 ADVVILCVPDDDAVEAVLFGE--NILA----GL--RPGKIIID-MST---ISPETSRELAERLAAKGVRYVDAPVSG 122 (163)
T ss_dssp BSEEEE-SSSHHHHHHHHHCT--THGG----GS---TTEEEEE--SS-----HHHHHHHHHHHHHTTEEEEEEEEES
T ss_pred ccceEeecccchhhhhhhhhh--HHhh----cc--ccceEEEe-cCC---cchhhhhhhhhhhhhccceeeeeeeec
Confidence 899887755555555555551 1211 11 22333332 233 4565555554 56889999987 5544
No 64
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=46.83 E-value=36 Score=26.33 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc----CCeEEEEecc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATK 44 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~----g~eV~vv~T~ 44 (199)
||++++||+....-+..++..+.+ +.++.++.-+
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEE
Confidence 689999999999888888777643 4577665433
No 65
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.78 E-value=1.1e+02 Score=22.09 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=25.1
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChh
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTF 134 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~ 134 (199)
.+|++++.|=...-+.++.. .+-..++||.+.+.+.-.
T Consensus 47 ~~Dvill~PQv~~~~~~i~~-----------~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 47 DYDLVILAPQMASYYDELKK-----------DTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred CCCEEEEcChHHHHHHHHHH-----------HhhhcCCCEEEeCHHHHh
Confidence 58999999988776655421 122357899888854444
No 66
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=45.51 E-value=48 Score=26.58 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=50.7
Q ss_pred ccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHh-cCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085 83 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 161 (199)
Q Consensus 83 l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g 161 (199)
+.+.+|++|+.|--..|+.-+..-++ ...+ ..+||++++ .....|+ | ..+-++.+.+.|+ +++...
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~-------~~qlg~~~kPiil~--n~~g~~~-~-l~~~l~~~~~~gf--i~~~~~ 159 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLT-------WAQLGIHQKPIILF--NVNGHFD-G-LVEWLKYSIQEGF--ISESHL 159 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHH-------HHHcCCCCCCEEEE--CCcchHH-H-HHHHHHHHHHCCC--CCHHHc
Confidence 35679999999999999987653322 1111 247899887 2245674 3 2344455666664 555432
Q ss_pred ccccCCCCCCCCCChHHHHHHHHH
Q 029085 162 RLACGDYGNGAMAEPSLIYSTVRL 185 (199)
Q Consensus 162 ~~a~g~~g~~~~~~~e~i~~~v~~ 185 (199)
.+ ..-..+++++++.++.
T Consensus 160 ~~------~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 160 KL------IHVVSRPDELIEQVQN 177 (178)
T ss_pred Cc------EEEcCCHHHHHHHHHh
Confidence 21 1235688888887753
No 67
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.30 E-value=2.7e+02 Score=26.05 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCccccccccccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 87 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~a 87 (199)
+.+++++-.|..+- .+.+.|++ |++|.++=.+ -.+.-... +.+.+++.++.. ++ +-..+..+ +.+
T Consensus 417 ~~hiiI~G~G~~G~----~la~~L~~~g~~vvvId~d-~~~~~~~~--~~g~~~i~GD~~-----~~-~~L~~a~i-~~a 482 (558)
T PRK10669 417 CNHALLVGYGRVGS----LLGEKLLAAGIPLVVIETS-RTRVDELR--ERGIRAVLGNAA-----NE-EIMQLAHL-DCA 482 (558)
T ss_pred CCCEEEECCChHHH----HHHHHHHHCCCCEEEEECC-HHHHHHHH--HCCCeEEEcCCC-----CH-HHHHhcCc-ccc
Confidence 45777777777665 37778875 8898666544 33321111 134455444210 00 00111222 468
Q ss_pred cEEEEccCCHHHHHHHHhcccCcH-HHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCE-EeCC
Q 029085 88 DIMVIAPLSANTLGKIAGGLCDNL-LTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGIS-LIPP 158 (199)
Q Consensus 88 D~~vVaPaTanTlaKiA~GiaDnl-lt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~-vv~P 158 (199)
|.++++=-.- .+|. +...++......+++ +-. +++ +|.+.|++.|+. ++.|
T Consensus 483 ~~viv~~~~~----------~~~~~iv~~~~~~~~~~~ii-ar~------~~~---~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 483 RWLLLTIPNG----------YEAGEIVASAREKRPDIEII-ARA------HYD---DEVAYITERGANQVVMG 535 (558)
T ss_pred CEEEEEcCCh----------HHHHHHHHHHHHHCCCCeEE-EEE------CCH---HHHHHHHHcCCCEEECh
Confidence 8877762111 1121 222234433344454 433 355 788889988877 5555
No 68
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=43.84 E-value=45 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEE
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV 41 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv 41 (199)
..++++++.-.|.++..++-.+++ .|++|+||
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VI 42 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD---TGAFVTVV 42 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEE
Confidence 457888888788877765443333 38999998
No 69
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=43.61 E-value=32 Score=26.75 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.0
Q ss_pred HHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 25 FGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 25 ~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
++.+...|++ |++|.|.-|++|.+.+.
T Consensus 16 alYl~~~Lk~~G~~v~Va~npAA~kLl~ 43 (139)
T PF09001_consen 16 ALYLSYKLKKKGFEVVVAGNPAALKLLE 43 (139)
T ss_dssp HHHHHHHHHCTTEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCHHHHhHhh
Confidence 5567788886 99999999999998775
No 70
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=43.47 E-value=33 Score=30.49 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=24.3
Q ss_pred EEEEEcChHHHHHHHHHHHHhh-cCCeEEEEecccH
Q 029085 12 ILLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKSS 46 (199)
Q Consensus 12 ill~iTGs~~~~~~~~li~~L~-~g~eV~vv~T~~A 46 (199)
=.+++||+.+.+ +..+++.|. +||.|+-.+-+..
T Consensus 7 ~~VcVTGAsGfI-gswivk~LL~rGY~V~gtVR~~~ 41 (327)
T KOG1502|consen 7 KKVCVTGASGFI-GSWIVKLLLSRGYTVRGTVRDPE 41 (327)
T ss_pred cEEEEeCCchHH-HHHHHHHHHhCCCEEEEEEcCcc
Confidence 356889987655 566777765 5999998875433
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.25 E-value=33 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=31.0
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEeccc
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 45 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~ 45 (199)
+.+..+++||.+.+||....+. .+++.... +++|.+++|..
T Consensus 83 l~~~~~~~ri~vl~Sg~gsnl~--al~~~~~~~~~~~~i~~visn~ 126 (286)
T PRK06027 83 LLDSAERKRVVILVSKEDHCLG--DLLWRWRSGELPVEIAAVISNH 126 (286)
T ss_pred EcccccCcEEEEEEcCCCCCHH--HHHHHHHcCCCCcEEEEEEEcC
Confidence 4556678899999999988776 45555543 57999999875
No 72
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=43.18 E-value=21 Score=26.33 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=35.0
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
..+++.-||.-..+.-+++.+.|++ |..|.+.-|.+|.+-..
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~~AcrTyN 95 (109)
T cd05560 53 PEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQAACRTYN 95 (109)
T ss_pred CCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 4688888999888877788888876 99999999999987654
No 73
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=42.88 E-value=51 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEE
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 41 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv 41 (199)
+-+|||+++-||-.+.++++....|. . +.+++++
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll 37 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLI 37 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEE
Confidence 45789999999999998888776664 3 6676664
No 74
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=42.66 E-value=46 Score=25.22 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccH
Q 029085 5 TGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 5 ~~~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A 46 (199)
++..+.||-+.-+|-.+.. |-+.|.+ |++|.-+.+++.
T Consensus 6 ~~~~~l~I~iIGaGrVG~~----La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTA----LARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ------EEEEECTSCCCCH----HHHHHHHTTSEEEEESSCHH
T ss_pred cCCCccEEEEECCCHHHHH----HHHHHHHCCCeEEEEEeCCc
Confidence 3455678888877777765 4555654 999999988764
No 75
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=42.63 E-value=48 Score=25.77 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=28.0
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEecccH
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSS 46 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~T~~A 46 (199)
||++++|||....-+..++..+.. +.+|.++.-+.+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 689999999999988888877643 567887765544
No 76
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=42.58 E-value=42 Score=28.98 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=30.9
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEeccc
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 45 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~ 45 (199)
+....+++||.+.+||+..++. .++...+. ..+|.+++|..
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~--~l~~~~~~g~l~~~i~~visn~ 121 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLG--DLLWRWYSGELDAEIALVISNH 121 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHH--HHHHHHHcCCCCcEEEEEEEcC
Confidence 4455567899999999988876 45666654 36999999875
No 77
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=42.31 E-value=16 Score=26.79 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
.+.-+++.-||.....--+++.+.|++ |..|.+.-|++|.+-..
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~tyN 96 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRTYN 96 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHHHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence 355678888998844447778888876 99999999999987544
No 78
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=42.25 E-value=1.8e+02 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEeccc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKS 45 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~ 45 (199)
+.||++.-+|+++.+.+..|.+ .|++|.++.-..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCC
Confidence 4589999999999986654332 289999887544
No 79
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=42.01 E-value=1.5e+02 Score=26.32 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred cccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHC
Q 029085 86 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL 151 (199)
Q Consensus 86 ~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~ 151 (199)
..|.+|++|-|+.|.|-++.|++- .....+||=+|.--. ..-.++++-+|...
T Consensus 180 ~fD~vVva~gs~gT~AGl~~g~~~---------~~~~~~ViG~~v~~~----~~~~~~qv~~L~~~ 232 (323)
T COG2515 180 KFDSVVVAPGSGGTHAGLLVGLAQ---------LGPDVEVIGIDVSAD----PEKLKEQVLNLAQA 232 (323)
T ss_pred CCCEEEEeCCCcchHHHHHHHhhh---------ccCCCceEEEeecCC----HHHHHHHHHHHHHH
Confidence 589999999999999999999872 234678887776332 22344566665443
No 80
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=41.87 E-value=2.4e+02 Score=29.01 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCCcEEEEEcChHHH-------HHHHHHHHHhhc-CCeEEEEecc
Q 029085 8 RKPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVATK 44 (199)
Q Consensus 8 ~~k~ill~iTGs~~~-------~~~~~li~~L~~-g~eV~vv~T~ 44 (199)
.-||||+.-+|.+.. |...++++.|++ |++|.++-+.
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~n 49 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSN 49 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecc
Confidence 356888887887432 235578888886 8887776554
No 81
>PLN02477 glutamate dehydrogenase
Probab=41.79 E-value=2.8e+02 Score=25.41 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.6
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 122 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 122 ~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
+.++|+=.+ ++|.+.+.-+.|++.|+.++|-
T Consensus 303 ~ak~I~egA------N~p~t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 303 KAKFIVEAA------NHPTDPEADEILRKKGVVVLPD 333 (410)
T ss_pred CCcEEEeCC------CCCCCHHHHHHHHHCCcEEECh
Confidence 678888888 7788888889999999999974
No 82
>PRK14030 glutamate dehydrogenase; Provisional
Probab=41.62 E-value=1.7e+02 Score=27.18 Aligned_cols=33 Identities=9% Similarity=-0.092 Sum_probs=27.1
Q ss_pred CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCC
Q 029085 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 159 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~ 159 (199)
.+.++|+=-+ .+|.+.+..+.|++.|+.++|-.
T Consensus 335 ~~ak~V~EgA------N~p~t~eA~~iL~~rGI~~vPD~ 367 (445)
T PRK14030 335 NGVLCVAEVS------NMGCTAEAIDKFIAAKQLFAPGK 367 (445)
T ss_pred cCCeEEEeCC------CCCCCHHHHHHHHHCCCEEeCcc
Confidence 3668887777 67888899999999999999753
No 83
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=41.38 E-value=3e+02 Score=25.66 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
.+.++|+=-+ .+|.+.+..+.|++.|+.++|-
T Consensus 344 ~~ak~V~EgA------N~p~t~eA~~~L~~~GI~~~PD 375 (454)
T PTZ00079 344 NGCKLVAEGA------NMPTTIEATHLFKKNGVIFCPG 375 (454)
T ss_pred cCCeEEEecC------CCCCCHHHHHHHHHCCcEEECh
Confidence 4678877777 7788889999999999999974
No 84
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=41.16 E-value=21 Score=26.21 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
..+++.-||.-...--+++.+.|++ |..|.+.=|++|.+-..
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAcrTyN 95 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAACRTYN 95 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHHHHHH
Confidence 5688888998776557778888876 99999999999987654
No 85
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=41.07 E-value=55 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
.+++||++++||++-..-+..+++. .|++|..+.-+
T Consensus 3 ~~~~kVlVa~SGGvDSsv~a~lL~~--~G~eV~av~~~ 38 (362)
T PRK14664 3 ESKKRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMR 38 (362)
T ss_pred CCCCEEEEEEeCCHHHHHHHHHHHH--cCCcEEEEEec
Confidence 3457999999999988765555543 37887765543
No 86
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=40.46 E-value=2.3e+02 Score=23.96 Aligned_cols=111 Identities=15% Similarity=0.063 Sum_probs=54.5
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEecc--cHHHHhchhcCCCCCeeEeCccchhccccCCCcccccccccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATK--SSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRW 86 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~T~--~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~ 86 (199)
||.+.-+|.++.. +++.+.+ +.++..+... +..+.. ..+..+..++++- +.. ...
T Consensus 3 rVgIiG~G~iG~~----~~~~l~~~~~~~l~~v~~~~~~~~~~~--~~~~~~~~~~~d~-------------~~l--~~~ 61 (265)
T PRK13303 3 KVAMIGFGAIGAA----VLELLEHDPDLRVDWVIVPEHSIDAVR--RALGEAVRVVSSV-------------DAL--PQR 61 (265)
T ss_pred EEEEECCCHHHHH----HHHHHhhCCCceEEEEEEcCCCHHHHh--hhhccCCeeeCCH-------------HHh--ccC
Confidence 7777777888876 3344443 4666655532 222211 1111223333331 111 235
Q ss_pred ccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHH-HHCCCEEeC
Q 029085 87 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI-DELGISLIP 157 (199)
Q Consensus 87 aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L-~~~G~~vv~ 157 (199)
.|+++++--+. .. ...+..++..++++++ +++..+..+...+.|..+ ++.|..+.-
T Consensus 62 ~DvVve~t~~~-~~-----------~e~~~~aL~aGk~Vvi---~s~~Al~d~~~~~~L~~~A~~~g~~l~v 118 (265)
T PRK13303 62 PDLVVECAGHA-AL-----------KEHVVPILKAGIDCAV---ISVGALADEALRERLEQAAEAGGARLHL 118 (265)
T ss_pred CCEEEECCCHH-HH-----------HHHHHHHHHcCCCEEE---eChHHhcCHHHHHHHHHHHHHCCCEEEE
Confidence 89988874221 11 1222344456889886 333333344455556655 445776544
No 87
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=40.35 E-value=55 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhh--c-CCeEEEEecc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFS--E-WAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~--~-g~eV~vv~T~ 44 (199)
+.+|+|++|||....-.+.++..++ . ++++.++-=+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvn 53 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVH 53 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 5789999999999988888887775 2 6777766543
No 88
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.39 E-value=2.2e+02 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=24.1
Q ss_pred CCcEEEEEcChHHH-------HHHHHHHHHhhc-CCeEEEEec
Q 029085 9 KPRILLAASGSVAA-------IKFGNLCHCFSE-WAEVRAVAT 43 (199)
Q Consensus 9 ~k~ill~iTGs~~~-------~~~~~li~~L~~-g~eV~vv~T 43 (199)
.||||+.-+|++.. +...++++.|++ |++|.++=+
T Consensus 7 ~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~ 49 (1066)
T PRK05294 7 IKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNS 49 (1066)
T ss_pred CCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcC
Confidence 46888888887643 224467888886 888777654
No 89
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=39.19 E-value=1e+02 Score=27.08 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhccC
Q 029085 116 VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES 189 (199)
Q Consensus 116 ~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~~ 189 (199)
++++..++|+|++|... +.+ .|.+.+.+.|+-+.-+. .-.+.+++.+.++..+++
T Consensus 305 ~Eal~~G~P~v~~p~~~----dq~---~~a~~l~~~g~g~~l~~------------~~~~~~~l~~ai~~~l~~ 359 (392)
T TIGR01426 305 MEALFNGVPMVAVPQGA----DQP---MTARRIAELGLGRHLPP------------EEVTAEKLREAVLAVLSD 359 (392)
T ss_pred HHHHHhCCCEEecCCcc----cHH---HHHHHHHHCCCEEEecc------------ccCCHHHHHHHHHHHhcC
Confidence 34455689999999853 222 46667777775543111 123567788877777654
No 90
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.76 E-value=46 Score=28.90 Aligned_cols=42 Identities=7% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEecccH
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKSS 46 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~A 46 (199)
+.....++||.+.+||+...+. .++...+. .++|.+++|...
T Consensus 87 i~~~~~~~kiavl~Sg~g~nl~--al~~~~~~~~l~~~i~~visn~~ 131 (289)
T PRK13010 87 IHPDGQRPKVVIMVSKFDHCLN--DLLYRWRMGELDMDIVGIISNHP 131 (289)
T ss_pred EecCCCCeEEEEEEeCCCccHH--HHHHHHHCCCCCcEEEEEEECCh
Confidence 4455567799999999988876 45666654 479999998863
No 91
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=38.67 E-value=59 Score=29.14 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=24.9
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
+++|+++++||++...-+..++++. |++|..+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~~--G~~V~~v~ 36 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLEA--GYEVTGVT 36 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHc--CCeEEEEE
Confidence 4569999999999988766666543 77876553
No 92
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=37.68 E-value=43 Score=25.61 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=27.4
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 156 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv 156 (199)
++.+++|++|-- +=++|+. +++..++|.|++|.-...- .--..|-..+.+.|.-..
T Consensus 68 ~~m~~aDlvIs~-aG~~Ti~---------------E~l~~g~P~I~ip~~~~~~---~~q~~na~~~~~~g~~~~ 123 (167)
T PF04101_consen 68 ELMAAADLVISH-AGAGTIA---------------EALALGKPAIVIPLPGAAD---NHQEENAKELAKKGAAIM 123 (167)
T ss_dssp HHHHHHSEEEEC-S-CHHHH---------------HHHHCT--EEEE--TTT-T----CHHHHHHHHHHCCCCCC
T ss_pred HHHHHcCEEEeC-CCccHHH---------------HHHHcCCCeeccCCCCcch---HHHHHHHHHHHHcCCccc
Confidence 455678855433 3333433 3344689999999832110 122346667888876654
No 93
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=37.40 E-value=63 Score=23.03 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.0
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEe
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 42 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~ 42 (199)
||++++.|+-.+..++++...|.+ +.+++++-
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~ 34 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLN 34 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 689999999999889888888753 56665443
No 94
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=37.39 E-value=73 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=24.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEe
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 42 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~ 42 (199)
+|++++.++..+..++++...+.+ +.+++++.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999888888888777653 67777654
No 95
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.30 E-value=53 Score=26.72 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
..+|+++|.-.|.++..++-.+++ .|++|.|+-
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs 40 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVIS 40 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEc
Confidence 457899988888888765443333 388999884
No 96
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=36.70 E-value=71 Score=26.37 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHH
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 47 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~ 47 (199)
..+|++++.-+|+.+.-|+-.+++. |.+|+|+.-+...
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~---ga~v~Vvs~~~~~ 47 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKA---GADVTVVSPEFEP 47 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhc---CCEEEEEcCCccH
Confidence 4578899988998888876544443 8999998876533
No 97
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=36.28 E-value=57 Score=29.29 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=18.7
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
|||++++||++...-+..++++ +|+||.-+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~--~G~~V~Gv~ 31 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE--QGYDVIGVT 31 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH--CT-EEEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHh--hcccceEEE
Confidence 5899999999887765544442 489876443
No 98
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=36.09 E-value=30 Score=25.83 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
+..+++.-||.....--+++.+.|++ |..+.+.-|++|.+-..
T Consensus 54 ~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~AcrtyN 97 (114)
T cd05125 54 RPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRNACATFN 97 (114)
T ss_pred CCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHHHHHHHH
Confidence 34588888998744446677778876 99999999999987654
No 99
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=36.01 E-value=92 Score=29.12 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEe
Q 029085 116 VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 156 (199)
Q Consensus 116 ~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv 156 (199)
.+|+..++|+|++|-.. +.+ .|.+++.+.|+-+.
T Consensus 378 ~Eal~~GvP~v~iP~~~----DQ~---~Na~rv~~~G~G~~ 411 (507)
T PHA03392 378 DEAIDALVPMVGLPMMG----DQF---YNTNKYVELGIGRA 411 (507)
T ss_pred HHHHHcCCCEEECCCCc----cHH---HHHHHHHHcCcEEE
Confidence 34555789999999855 334 67788888886654
No 100
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=35.42 E-value=1.1e+02 Score=25.65 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc--cccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR--LACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~--~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
...|++. -+...-.....+.+|++.|.+.|+.=+-.+-+. --||..|-...-++|+-++.++.+.+
T Consensus 68 ~~~Pv~~--D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~ 135 (243)
T cd00377 68 VDLPVIA--DADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARD 135 (243)
T ss_pred ccCCEEE--EcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHH
Confidence 3568443 233332222467789999988988755443332 23777777777899999988876654
No 101
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.04 E-value=73 Score=28.04 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=44.8
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhc---CCCCCeeEeCccchhccccCCCccccccc
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA---LPKDVIFYTDEDEWATWNKIGDSVLHIEL 83 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~---l~~~~~v~~~~~~~~~~~~~~~~~~h~~l 83 (199)
..++|+++..||=.---+.+++..|.+ ...+++|+..+....-.... .......|.+..+ --+|
T Consensus 157 ~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~d------------ma~L 224 (318)
T COG3980 157 PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTND------------MAEL 224 (318)
T ss_pred chheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchh------------HHHH
Confidence 355699997777555558888888865 78899999833322211111 1122333433211 1246
Q ss_pred cccccEEEEccC
Q 029085 84 RRWADIMVIAPL 95 (199)
Q Consensus 84 ~~~aD~~vVaPa 95 (199)
-..+|+.++++-
T Consensus 225 Mke~d~aI~AaG 236 (318)
T COG3980 225 MKEADLAISAAG 236 (318)
T ss_pred HHhcchheeccc
Confidence 678999998863
No 102
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.56 E-value=62 Score=27.08 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHH
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLH 48 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~ 48 (199)
..++++||.-.|.++.-|+..|++ .|++|+||.-+-..+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~e 61 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKE 61 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHH
Confidence 447788888888888777654443 389999997654333
No 103
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=34.32 E-value=99 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=22.6
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccC
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMN 132 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn 132 (199)
++...+|+++.. . | +.+++++..++|+|+.|.++
T Consensus 257 ~~~~~aDl~v~~-s----------G------~~~lEa~a~G~PvI~~~~~~ 290 (380)
T PRK00025 257 EAMAAADAALAA-S----------G------TVTLELALLKVPMVVGYKVS 290 (380)
T ss_pred HHHHhCCEEEEC-c----------c------HHHHHHHHhCCCEEEEEccC
Confidence 345679998883 1 2 12235655799999999754
No 104
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=34.27 E-value=3.2e+02 Score=23.89 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=64.9
Q ss_pred CcccCCCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccH--HHHhchhcCCCCCeeEeCccchhccccCCCcc
Q 029085 1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSS--LHFIDRAALPKDVIFYTDEDEWATWNKIGDSV 78 (199)
Q Consensus 1 ~~~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A--~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~ 78 (199)
||+.-....+-++-||||-.+.+.+...+.. |-++..=+++.. .++ .+.++|.+-.+ ..
T Consensus 5 ~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~~~~i-------~G~~~y~sv~d------lp--- 65 (300)
T PLN00125 5 PAVFVDKNTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEH-------LGLPVFNTVAE------AK--- 65 (300)
T ss_pred ceEEecCCCeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCCCceE-------cCeeccCCHHH------Hh---
Confidence 4454444455677899999888765544433 778888888763 222 24455544211 11
Q ss_pred ccccccccccEEEE-ccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHH-HHCCCEEe
Q 029085 79 LHIELRRWADIMVI-APLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI-DELGISLI 156 (199)
Q Consensus 79 ~h~~l~~~aD~~vV-aPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L-~~~G~~vv 156 (199)
+. ...|+.|| .|+ +.....+..+...+.+.+++.+-.-. +.- .++-+... ++.|++|+
T Consensus 66 ~~----~~~DlAvI~vPa-------------~~v~~al~e~~~~Gvk~~vIisaGf~--e~g-~~~~~~~~ar~~girvi 125 (300)
T PLN00125 66 AE----TKANASVIYVPP-------------PFAAAAILEAMEAELDLVVCITEGIP--QHD-MVRVKAALNRQSKTRLI 125 (300)
T ss_pred hc----cCCCEEEEecCH-------------HHHHHHHHHHHHcCCCEEEEECCCCC--ccc-HHHHHHHHHhhcCCEEE
Confidence 10 02466444 553 22233333444456676655442211 221 34555554 66799999
Q ss_pred CCCC
Q 029085 157 PPVS 160 (199)
Q Consensus 157 ~P~~ 160 (199)
.|..
T Consensus 126 GPNc 129 (300)
T PLN00125 126 GPNC 129 (300)
T ss_pred CCCC
Confidence 9976
No 105
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.24 E-value=95 Score=22.68 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=19.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHh-hc-CCeEEEEecc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCF-SE-WAEVRAVATK 44 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L-~~-g~eV~vv~T~ 44 (199)
|||+++..+|.+.--+..-++.+ ++ |.++.+..+.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~ 38 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAIT 38 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 57777766666555444444444 33 6666655544
No 106
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=33.67 E-value=79 Score=24.62 Aligned_cols=33 Identities=24% Similarity=0.073 Sum_probs=24.5
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhcCCeEEEEeccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKS 45 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~ 45 (199)
++++++|||.-..-+..++++. |++|..+.-+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~--g~~v~av~~d~ 33 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR--GIEVDALHFNS 33 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc--CCeEEEEEEeC
Confidence 5899999999888766666553 88887665443
No 107
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=33.15 E-value=62 Score=25.61 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=25.4
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc-CC--eEEEEecccHHH
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE-WA--EVRAVATKSSLH 48 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~-g~--eV~vv~T~~A~~ 48 (199)
+||++.+||+....+ .+++.+++ +. ++..++|+....
T Consensus 1 mrI~~~~Sg~~~~~~--~~l~~l~~~~~~~~iv~Vit~~~~~ 40 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLK--ALLEALKARGHNVEIVLVITNPDKP 40 (181)
T ss_dssp EEEEEEESSSSHHHH--HHHHHHHTTSSEEEEEEEEESSTTT
T ss_pred CEEEEEEcCCCHHHH--HHHHHHHhCCCCceEEEEecccccc
Confidence 489999999987765 44666664 44 577777775543
No 108
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=32.70 E-value=3.5e+02 Score=23.95 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=41.0
Q ss_pred ccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHH---------HHHHHCCC
Q 029085 83 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHL---------MSIDELGI 153 (199)
Q Consensus 83 l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl---------~~L~~~G~ 153 (199)
....+|++|... |. .+++++-.++|+|++..+++--|. ..+++ ..|.+.++
T Consensus 264 ~l~aADl~V~~S-----------Gt------~tlEa~a~G~P~Vv~yk~~pl~~~---~~~~~~~~~~~~~~nil~~~~~ 323 (385)
T TIGR00215 264 AMFAADAALLAS-----------GT------AALEAALIKTPMVVGYRMKPLTFL---IARRLVKTDYISLPNILANRLL 323 (385)
T ss_pred HHHhCCEEeecC-----------CH------HHHHHHHcCCCEEEEEcCCHHHHH---HHHHHHcCCeeeccHHhcCCcc
Confidence 345789887764 11 112555578999999876543221 11221 12333332
Q ss_pred EEeCCCCcccccCCCCCCCCCChHHHHHHHHHhccCC
Q 029085 154 SLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR 190 (199)
Q Consensus 154 ~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~ 190 (199)
. |+. ...-.+++.|.+.+...+.++
T Consensus 324 ~---pel---------~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 324 V---PEL---------LQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred c---hhh---------cCCCCCHHHHHHHHHHHhcCC
Confidence 1 111 122347888988888887654
No 109
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.68 E-value=76 Score=27.93 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=26.1
Q ss_pred CcEEEEEcChHHH--HHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 10 PRILLAASGSVAA--IKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 10 k~ill~iTGs~~~--~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
|||+++ +|+.+. +-++.+.++|++ |++|..+-|+.+.
T Consensus 2 ~~i~~~-~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~ 41 (352)
T PRK12446 2 KKIVFT-GGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI 41 (352)
T ss_pred CeEEEE-cCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence 466665 444443 347788899986 9999999888764
No 110
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=32.64 E-value=38 Score=25.35 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=32.7
Q ss_pred CcEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 10 PRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 10 k~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
..|++.-||.-..+. -+++.+.|++ |.+|.+.-|++|.+-..
T Consensus 59 peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcrTYN 102 (117)
T cd05126 59 VEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVKRYN 102 (117)
T ss_pred CCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHHHHH
Confidence 457777899987755 6667777775 89999999999987654
No 111
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=32.36 E-value=53 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=24.4
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
++-.++|.|||++.. .++.++...+.++|..+.
T Consensus 2 k~VaILGsTGSIG~~-tL~vi~~~p~~f~VvaLa 34 (385)
T PRK05447 2 KRITILGSTGSIGTQ-TLDVIRRNPDRFRVVALS 34 (385)
T ss_pred ceEEEEcCChHHHHH-HHHHHHhCccccEEEEEE
Confidence 344677789999887 677787776667877776
No 112
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=32.06 E-value=78 Score=25.81 Aligned_cols=119 Identities=20% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcCC-CC-CeeEeCccchhccccCCCcccccccc
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP-KD-VIFYTDEDEWATWNKIGDSVLHIELR 84 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l~-~~-~~v~~~~~~~~~~~~~~~~~~h~~l~ 84 (199)
..+|+++|.-.|.++..++-.+++ .|++|+|+-.+...++-. +. .+ ..+.... + .... .
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~---~ga~VtVvsp~~~~~l~~---l~~~~~i~~~~~~-----~-------~~~d-l 67 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLK---AGAQLRVIAEELESELTL---LAEQGGITWLARC-----F-------DADI-L 67 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHH---HHHcCCEEEEeCC-----C-------CHHH-h
Confidence 457788888778777666543333 389999886543222211 11 11 1121111 1 1112 2
Q ss_pred ccccEEEEccCCH--H-HHHHHH--hcc----cCcHHHH-H-HHHhcCCCcEEEEeccChhhhhChHHHHHHHH
Q 029085 85 RWADIMVIAPLSA--N-TLGKIA--GGL----CDNLLTC-I-VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMS 147 (199)
Q Consensus 85 ~~aD~~vVaPaTa--n-TlaKiA--~Gi----aDnllt~-~-~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~ 147 (199)
..+|+++++|-.- | -+.+.| .|+ +|++-.+ . .=+.-.+.++.++.+.+. .+|...+.|+.
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G---~sP~la~~lr~ 138 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGG---AAPVLARLLRE 138 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCC---CCcHHHHHHHH
Confidence 4678877776543 1 233333 243 4554321 1 111112457888887665 67877776654
No 113
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=31.59 E-value=89 Score=28.14 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
+++|++++.||+....-+..+++. +|+||.-+.
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~--QGyeViGl~ 34 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKE--QGYEVIGLF 34 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHH--cCCeEEEEE
Confidence 577999999999887654444332 289887554
No 114
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.34 E-value=51 Score=25.25 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccH
Q 029085 12 ILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 12 ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A 46 (199)
+++|.||.++-. +++.|.+ +++|+++..+..
T Consensus 2 ~V~GatG~vG~~----l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 2 LVFGATGFVGRA----LAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEETTTSHHHHH----HHHHHHHTTSEEEEEESSGG
T ss_pred EEECCCChHHHH----HHHHHHHCCCEEEEEecCch
Confidence 345556655554 6666654 899999886644
No 115
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.31 E-value=1.6e+02 Score=25.80 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=44.1
Q ss_pred ccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc
Q 029085 83 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR 162 (199)
Q Consensus 83 l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~ 162 (199)
+..++|++|-- +.++|++- ++-.++|.|++|......-.+ =..|.+.+.+.|+-..-...
T Consensus 249 ~~~~adlvIsr-~G~~t~~E---------------~~~~g~P~I~iP~~~~~~~~~--Q~~Na~~l~~~g~~~~l~~~-- 308 (352)
T PRK12446 249 ILAITDFVISR-AGSNAIFE---------------FLTLQKPMLLIPLSKFASRGD--QILNAESFERQGYASVLYEE-- 308 (352)
T ss_pred HHHhCCEEEEC-CChhHHHH---------------HHHcCCCEEEEcCCCCCCCch--HHHHHHHHHHCCCEEEcchh--
Confidence 45678866554 55555543 222589999998632110000 12577788888876543322
Q ss_pred cccCCCCCCCCCChHHHHHHHHHhccC
Q 029085 163 LACGDYGNGAMAEPSLIYSTVRLFAES 189 (199)
Q Consensus 163 ~a~g~~g~~~~~~~e~i~~~v~~~~~~ 189 (199)
-.+++.+.+.+...+++
T Consensus 309 ----------~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 309 ----------DVTVNSLIKHVEELSHN 325 (352)
T ss_pred ----------cCCHHHHHHHHHHHHcC
Confidence 11567777777766643
No 116
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.15 E-value=96 Score=26.61 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=34.2
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhch
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDR 52 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~ 52 (199)
|||+.-+++++-.- +.-+++.|++ +++|+++.++....+++.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 46 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER 46 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc
Confidence 68888899988875 6778899986 689999999888777763
No 117
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.03 E-value=58 Score=28.63 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=7.8
Q ss_pred cCCCcEEEEe
Q 029085 120 DYNKPLFVAP 129 (199)
Q Consensus 120 ~~~~Pvvi~P 129 (199)
..++|++++-
T Consensus 219 e~~~Pf~v~a 228 (301)
T COG1184 219 ELRVPFYVVA 228 (301)
T ss_pred HhCCCEEEEe
Confidence 4689999883
No 118
>PRK07667 uridine kinase; Provisional
Probab=30.86 E-value=58 Score=25.96 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCCcEEEEEcChHHHHH---HHHHHHHhhc-CCeEEEEeccc
Q 029085 8 RKPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~---~~~li~~L~~-g~eV~vv~T~~ 45 (199)
.+.++++|++|..++=| +-.+.+.|.+ |..+.++-.+.
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 35579999999998877 2234455554 67776665553
No 119
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=30.81 E-value=74 Score=26.60 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=23.4
Q ss_pred cEEEEEcC---hHHHHHHHHHHHHhhc-CCeEEEEecc
Q 029085 11 RILLAASG---SVAAIKFGNLCHCFSE-WAEVRAVATK 44 (199)
Q Consensus 11 ~ill~iTG---s~~~~~~~~li~~L~~-g~eV~vv~T~ 44 (199)
||++..|| |.+...+.++.+.|.+ |++|.++.+.
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 36666664 2233447788999986 9999988653
No 120
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=30.74 E-value=84 Score=28.62 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred cCcHHH-HHHHHhc---CCCcEEEEeccChhhhhChHHHHHHHHHHHC--CCEEeCCCC
Q 029085 108 CDNLLT-CIVRAWD---YNKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVS 160 (199)
Q Consensus 108 aDnllt-~~~~a~~---~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~--G~~vv~P~~ 160 (199)
+||++. .++.+.. .++-+|.-+. |||.+.+-++.|... .++.++|..
T Consensus 73 snNlaI~g~~~a~~~~~~~~HIIts~i------EH~aVl~~~~~Le~~g~~Vtyl~V~~ 125 (386)
T COG1104 73 SNNLAIKGAALAYRNAQKGKHIITSAI------EHPAVLNTCRYLERQGFEVTYLPVDS 125 (386)
T ss_pred HHHHHHHhhHHhhhcccCCCeEEEccc------ccHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 467643 3344432 3567777777 999999999999554 466777764
No 121
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.74 E-value=82 Score=22.44 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=24.4
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc--CCeEEEEe
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVA 42 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~--g~eV~vv~ 42 (199)
||++++.||-...+++++...+.+ +.+++++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~ 34 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVY 34 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEE
Confidence 689999999998888888877753 55655443
No 122
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=30.30 E-value=3.6e+02 Score=23.31 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=54.8
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEeccc--HHHHhchhcCCCCCeeEeCccchhccccCCCccccccccccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS--SLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 87 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~--A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~a 87 (199)
-++.|+||..+.+ +++.+.. |.++..-+++. +.++ .+.++|..-.+ ..++ + ..
T Consensus 9 ~~~~g~~~~~~~~----~~~~~~~~g~~~v~~V~p~~~~~~v-------~G~~~y~sv~d------lp~~--~-----~~ 64 (286)
T TIGR01019 9 VIVQGITGSQGSF----HTEQMLAYGTNIVGGVTPGKGGTTV-------LGLPVFDSVKE------AVEE--T-----GA 64 (286)
T ss_pred EEEecCCcHHHHH----HHHHHHhCCCCEEEEECCCCCccee-------cCeeccCCHHH------Hhhc--c-----CC
Confidence 4677999998886 3444443 65655556665 3322 23444433111 1100 0 14
Q ss_pred cEEEE-ccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHH-HHHCCCEEeCCCC
Q 029085 88 DIMVI-APLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMS-IDELGISLIPPVS 160 (199)
Q Consensus 88 D~~vV-aPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~-L~~~G~~vv~P~~ 160 (199)
|+.|| +|+ +.....+-++...+.+.+++.+-.- -+ ..++-|.. .++.|++|+.|..
T Consensus 65 Dlavi~vpa-------------~~v~~~l~e~~~~Gvk~avIis~Gf--~e--~~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 65 NASVIFVPA-------------PFAADAIFEAIDAGIELIVCITEGI--PV--HDMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred CEEEEecCH-------------HHHHHHHHHHHHCCCCEEEEECCCC--CH--HHHHHHHHHHHHcCCEEECCCC
Confidence 66555 442 2222233334334666666644111 11 12344444 4677999999976
No 123
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=30.28 E-value=1.2e+02 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCCcEEEEEcChHHHHH---HHHHHHHhhc-CCeEEEEecccHHHH
Q 029085 8 RKPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKSSLHF 49 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~---~~~li~~L~~-g~eV~vv~T~~A~~f 49 (199)
.++..++++||+.++=| +-.++..|++ |+.|-|+.-+-+..+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 35678999999999877 2335566665 888888876654443
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=30.24 E-value=88 Score=27.16 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=35.2
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhch
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDR 52 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~ 52 (199)
|||+.-+++++-.- +.-+++.|++ +++|+++.++....++..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 79999999998875 7778999986 689999999888877763
No 125
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.08 E-value=1.1e+02 Score=25.38 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=34.7
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhchh
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDRA 53 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~~ 53 (199)
|||+.-+++++-.- ...+++.|++ +.+|+++.++....+++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 68888888888875 6678899986 4899999999888887643
No 126
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=29.75 E-value=3.4e+02 Score=25.68 Aligned_cols=133 Identities=18% Similarity=0.186 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcCCC-----------CCeeEeCccchhcccc
Q 029085 5 TGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPK-----------DVIFYTDEDEWATWNK 73 (199)
Q Consensus 5 ~~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l~~-----------~~~v~~~~~~~~~~~~ 73 (199)
+...++|+.+.-+|..+.+-...+.+. |.. .+-++++---+++++.+.. ...-+.+.........
T Consensus 247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~---G~k-vvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~ 322 (514)
T KOG2250|consen 247 KGIKGKRVVIQGFGNVGGHAAKKLSEK---GAK-VVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYI 322 (514)
T ss_pred CCcCceEEEEeCCCchHHHHHHHHHhc---CCE-EEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCcccc
Confidence 556788998888888777654433322 533 3333333333444443320 0000111000000000
Q ss_pred CCCccccccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCC
Q 029085 74 IGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGI 153 (199)
Q Consensus 74 ~~~~~~h~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~ 153 (199)
...|+.+ +...+|+++=+ ||-|.|.+ +|.-..+ + .+.|.|+==+ ..|.+++-.+-|.+.|+
T Consensus 323 ~~~~~~~--~v~~~DI~vPC-A~qn~I~~------~nA~~lv--a--k~~~~IvEGA------N~ptTpeA~~vlek~gv 383 (514)
T KOG2250|consen 323 AGLPPWT--LVEKCDILVPC-ATQNEITG------ENAKALV--A--KGCKYIVEGA------NMPTTPEADEVLEKAGV 383 (514)
T ss_pred ccCcchh--hHhhCcEEeec-CccCcccH------hhHHHHH--h--cCCcEEEecC------CCCCChhHHHHHHhCCe
Confidence 1112222 23467877655 56677765 3433221 2 3557776666 68888899999999999
Q ss_pred EEeCCCC
Q 029085 154 SLIPPVS 160 (199)
Q Consensus 154 ~vv~P~~ 160 (199)
.++|+..
T Consensus 384 ~i~Pd~~ 390 (514)
T KOG2250|consen 384 LIIPDIY 390 (514)
T ss_pred EEechhh
Confidence 9999865
No 127
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=29.57 E-value=1.1e+02 Score=27.13 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=35.0
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeE
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFY 62 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~ 62 (199)
.++|+|.+.-.||-+-..++ -||. |.+|.+-+-+.+..|-... +.+..|+
T Consensus 16 LkgK~iaIIGYGsQG~ahal----NLRDSGlnViiGlr~g~~s~~kA~--~dGf~V~ 66 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQAL----NLRDSGLNVIIGLRKGSSSWKKAK--EDGFKVY 66 (338)
T ss_pred hcCCeEEEEecChHHHHHHh----hhhhcCCcEEEEecCCchhHHHHH--hcCCEee
Confidence 46889999999998877654 4665 8999999988776553322 2344554
No 128
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=29.56 E-value=81 Score=23.21 Aligned_cols=31 Identities=6% Similarity=-0.146 Sum_probs=24.2
Q ss_pred cEEEEEcChHHHHHHHHHHHHhh-c-CCeEEEE
Q 029085 11 RILLAASGSVAAIKFGNLCHCFS-E-WAEVRAV 41 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~-~-g~eV~vv 41 (199)
+||+++-||..+.+++++...+. + +.++.++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll 33 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLV 33 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEE
Confidence 58999999999999988877664 3 6666554
No 129
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=29.52 E-value=82 Score=24.05 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=29.2
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc-C---CeEEEEe
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-W---AEVRAVA 42 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~-g---~eV~vv~ 42 (199)
|.++..+--..+|+||...-.-+..||+.|++ + .++.|++
T Consensus 80 vheq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 80 VHEQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eeEeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 34455565678899998888889999999986 3 3565554
No 130
>PRK04527 argininosuccinate synthase; Provisional
Probab=29.41 E-value=1e+02 Score=28.18 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=27.9
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHH
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 47 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~ 47 (199)
++++++++.||+....-+..+++. +|++|..+.-+.++
T Consensus 1 ~~~kVvVA~SGGvDSSvla~~l~e--~G~~Viavt~d~gq 38 (400)
T PRK04527 1 SSKDIVLAFSGGLDTSFCIPYLQE--RGYAVHTVFADTGG 38 (400)
T ss_pred CCCcEEEEEcCChHHHHHHHHHHH--cCCcEEEEEEEeCC
Confidence 357999999999988876666555 38888877655443
No 131
>PRK15005 universal stress protein F; Provisional
Probab=29.39 E-value=1.1e+02 Score=22.40 Aligned_cols=32 Identities=19% Similarity=-0.005 Sum_probs=22.0
Q ss_pred CCcEEEEEcChHH--HHHHHHHHHHhh-c-CCeEEE
Q 029085 9 KPRILLAASGSVA--AIKFGNLCHCFS-E-WAEVRA 40 (199)
Q Consensus 9 ~k~ill~iTGs~~--~~~~~~li~~L~-~-g~eV~v 40 (199)
-++||+++=||-. +.+++++...+. . +.++++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~l 37 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHF 37 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEE
Confidence 4789999999876 346777655553 3 666654
No 132
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=29.35 E-value=97 Score=25.24 Aligned_cols=37 Identities=19% Similarity=-0.024 Sum_probs=24.9
Q ss_pred cEEEEEcC-hHHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 11 RILLAASG-SVAAIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 11 ~ill~iTG-s~~~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
||++..+. +.......++++.|++ |++|.++.+....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 34555443 3334447789999965 9999999877554
No 133
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.29 E-value=80 Score=27.33 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=28.8
Q ss_pred cCCCCCCcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEeccc
Q 029085 4 NTGLRKPRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 45 (199)
Q Consensus 4 ~~~~~~k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~ 45 (199)
.+..+++||.+.+||+...+. .++...+. +++|.+++|+.
T Consensus 84 ~~~~~~~ri~vl~Sg~g~nl~--al~~~~~~~~~~~~i~~visn~ 126 (286)
T PRK13011 84 HDPAARPKVLIMVSKFDHCLN--DLLYRWRIGELPMDIVGVVSNH 126 (286)
T ss_pred eecccCceEEEEEcCCcccHH--HHHHHHHcCCCCcEEEEEEECC
Confidence 345567799999999877765 45555543 47999999853
No 134
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=29.22 E-value=1e+02 Score=25.78 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=42.9
Q ss_pred cccccEEEEccCCHHHHHHHHhcccCcHHHHHH-HHhcCCCcEEEEeccChhhhhChHHHHHHHH-HHHCCCEEeCCCC
Q 029085 84 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMS-IDELGISLIPPVS 160 (199)
Q Consensus 84 ~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~-L~~~G~~vv~P~~ 160 (199)
.+.+|++|.+ ++--++...++ .+...+.+-||+|+-.+. |..++.+++ |.++|+.+.-|..
T Consensus 49 i~~~Dl~I~y------------~lHPDl~~~l~~~~~e~g~kavIvp~~~~~----~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 49 IPEADLLIAY------------GLHPDLTYELPEIAKEAGVKAVIVPSESPK----PGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred CCCCCEEEEe------------ccCchhHHHHHHHHHHcCCCEEEEecCCCc----cchHHHHHHHHHhcCceeecCcc
Confidence 4579998875 33445554444 333478899999996665 667777865 7889999888865
No 135
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.84 E-value=2.5e+02 Score=23.65 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 115 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 115 ~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
.+++++.++=.++.|. -.+..|+-.+-|+..|+.|+.-..-- -.++...||.+ |..++++.++.+.
T Consensus 112 aL~al~a~ri~vlTPY------~~evn~~e~ef~~~~Gfeiv~~~~Lg-i~dn~eigr~~-P~~~y~lAk~~~~ 177 (238)
T COG3473 112 ALNALGAQRISVLTPY------IDEVNQREIEFLEANGFEIVDFKGLG-ITDNLEIGRQE-PWAVYRLAKEVFT 177 (238)
T ss_pred HHHhhCcceEEEeccc------hhhhhhHHHHHHHhCCeEEEEeeccC-CcccchhcccC-hHHHHHHHHHhcC
Confidence 3466677777778887 66788999999999999998742211 12234457774 4467776666553
No 136
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.45 E-value=1.5e+02 Score=20.97 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCCcEEEEEcChHHHHHH-HHHHHHh-hc-CCeEEEEecc
Q 029085 8 RKPRILLAASGSVAAIKF-GNLCHCF-SE-WAEVRAVATK 44 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~-~~li~~L-~~-g~eV~vv~T~ 44 (199)
|++||+++...|.+...+ ..-++.+ .+ |.++.+.-++
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~ 40 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR 40 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 455777775555555543 3444444 43 7776665543
No 137
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=28.32 E-value=49 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.3
Q ss_pred CCCcEEEEEcChHHHHH
Q 029085 8 RKPRILLAASGSVAAIK 24 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~ 24 (199)
.+.++++|+||++++=|
T Consensus 2 ~~~~~~igitG~igsGK 18 (208)
T PRK14731 2 RSLPFLVGVTGGIGSGK 18 (208)
T ss_pred CCCCEEEEEECCCCCCH
Confidence 35578999999999987
No 138
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=27.94 E-value=53 Score=22.97 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHCCCEEeC
Q 029085 138 NPFTERHLMSIDELGISLIP 157 (199)
Q Consensus 138 ~p~~~~nl~~L~~~G~~vv~ 157 (199)
.-++-.||++|++.|+.|-.
T Consensus 33 RtaVwK~Iq~Lr~~G~~I~s 52 (79)
T COG1654 33 RTAVWKHIQQLREEGVDIES 52 (79)
T ss_pred HHHHHHHHHHHHHhCCceEe
Confidence 45677899999999999864
No 139
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=27.91 E-value=99 Score=27.39 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=22.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
+||++++||+....-+..+++++ |++|..+.
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~--G~~V~~v~ 31 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ--GYEVIGVF 31 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc--CCcEEEEE
Confidence 48999999999888766666543 67766553
No 140
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.61 E-value=78 Score=25.89 Aligned_cols=19 Identities=0% Similarity=-0.239 Sum_probs=14.6
Q ss_pred CCChHHHHHHHHHhccCCC
Q 029085 173 MAEPSLIYSTVRLFAESRN 191 (199)
Q Consensus 173 ~~~~e~i~~~v~~~~~~~~ 191 (199)
.-+.+|+.+.+..++...+
T Consensus 204 ~i~~~dvA~~~~~~~~~~~ 222 (251)
T PLN00141 204 SISRDQVAEVAVEALLCPE 222 (251)
T ss_pred cccHHHHHHHHHHHhcChh
Confidence 4688999999988776443
No 141
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=27.29 E-value=1.1e+02 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=23.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEec
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 43 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T 43 (199)
+|+++++||+....-+..++.+ .|++|..+.-
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G~~V~~v~~ 32 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QGYEVVGVFM 32 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cCCeEEEEEE
Confidence 4899999999988876666554 3778776644
No 142
>PRK15456 universal stress protein UspG; Provisional
Probab=27.08 E-value=1.4e+02 Score=22.01 Aligned_cols=34 Identities=6% Similarity=-0.070 Sum_probs=23.6
Q ss_pred CCCcEEEEEcChH--HHHHHHHHHHHhhc-CCeEEEE
Q 029085 8 RKPRILLAASGSV--AAIKFGNLCHCFSE-WAEVRAV 41 (199)
Q Consensus 8 ~~k~ill~iTGs~--~~~~~~~li~~L~~-g~eV~vv 41 (199)
|-+|||+++=||- .+.++++....|.+ +.+++++
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~~~l~ll 37 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLL 37 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcCCeEEEE
Confidence 3579999999983 67777777766654 4455543
No 143
>PRK13054 lipid kinase; Reviewed
Probab=26.81 E-value=1e+02 Score=26.38 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcChHHHHH-HHHHHHHhhc-CCeEEEEeccc---HHHHhch
Q 029085 7 LRKPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKS---SLHFIDR 52 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~-~~~li~~L~~-g~eV~vv~T~~---A~~fv~~ 52 (199)
++++|+++.+-|.....+ ..++++.|++ ++++.+..|+. +.+++..
T Consensus 1 ~~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~ 51 (300)
T PRK13054 1 MTFPKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEE 51 (300)
T ss_pred CCCceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHH
Confidence 356788888877764444 6667777775 88999988864 4455443
No 144
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.68 E-value=82 Score=25.64 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=9.0
Q ss_pred cccEEEEccCCH
Q 029085 86 WADIMVIAPLSA 97 (199)
Q Consensus 86 ~aD~~vVaPaTa 97 (199)
.+|..+..|..-
T Consensus 156 ~~D~~i~ip~~~ 167 (196)
T PRK10886 156 PQDVEIRIPSHR 167 (196)
T ss_pred cCCEEEEcCCCc
Confidence 378999999743
No 145
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.52 E-value=64 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=30.7
Q ss_pred ChhhhhChHHHHHHHHHHHCC---CEEeCCCCcccccCCCCCCCCCChHHHHHHHHHh
Q 029085 132 NTFMWNNPFTERHLMSIDELG---ISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF 186 (199)
Q Consensus 132 n~~m~~~p~~~~nl~~L~~~G---~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~ 186 (199)
.+.-|-.|.+.+-|++|.+.| +.|+|| ||++. .+-+.+||-...+..
T Consensus 70 g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~--gF~~D------~~Etl~di~~e~~~~ 119 (135)
T cd00419 70 GPGEWLEPSTDDALEELAKEGVKNVVVVPI--GFVSD------HLETLYELDIEYREL 119 (135)
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCeEEEECC--ccccc------cHHHHHHHHHHHHHH
Confidence 345799999999999998887 556666 44432 243445554444443
No 146
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=26.42 E-value=1.2e+02 Score=27.36 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=27.2
Q ss_pred CCCCcEEEEEc-------ChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 7 LRKPRILLAAS-------GSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 7 ~~~k~ill~iT-------Gs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
.++.||++.+. ||. .....++++.|++ |+||.++.++.
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~-~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGY-KNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccH-HHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34568888753 333 3457788999986 99999998754
No 147
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=26.34 E-value=1.4e+02 Score=21.53 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=23.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
||++..... .. .+.++++.|++ |+||+++..+...
T Consensus 1 KIl~i~~~~-~~-~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTP-ST-FIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCc-HH-HHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 344444433 22 36688999987 9999999997653
No 148
>PLN00021 chlorophyllase
Probab=26.22 E-value=1.3e+02 Score=26.30 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 029085 122 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS 160 (199)
Q Consensus 122 ~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~ 160 (199)
+.|+|++ +|..++.+-.+..-++.|.+.|+.|+-|+.
T Consensus 51 ~~PvVv~--lHG~~~~~~~y~~l~~~Las~G~~VvapD~ 87 (313)
T PLN00021 51 TYPVLLF--LHGYLLYNSFYSQLLQHIASHGFIVVAPQL 87 (313)
T ss_pred CCCEEEE--ECCCCCCcccHHHHHHHHHhCCCEEEEecC
Confidence 3577666 445555555666677788999999998863
No 149
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=26.00 E-value=1.4e+02 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE-eCCCCcccccCCCCCCCCCChHHHHHHHHHhccC
Q 029085 114 CIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL-IPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES 189 (199)
Q Consensus 114 ~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~v-v~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~~ 189 (199)
++.+|+-.++|+|..|-+.+ .+ .|..++.+.|+-+ ++.. -.+.|++.+.++..+++
T Consensus 353 s~~Ea~~~gvP~l~~P~~~D----Q~---~na~~~~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGD----QP---RNAARVEEKGVGVVLDKN-------------DLTEEELRAAIREVLEN 409 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTT----HH---HHHHHHHHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHS
T ss_pred hhhhhhhccCCccCCCCccc----CC---ccceEEEEEeeEEEEEec-------------CCcHHHHHHHHHHHHhh
Confidence 44566667999999998654 33 5677788888754 3321 12557777777766654
No 150
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=25.95 E-value=2.4e+02 Score=23.07 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=35.3
Q ss_pred ccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHH-HHHCCCEEeC
Q 029085 81 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMS-IDELGISLIP 157 (199)
Q Consensus 81 ~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~-L~~~G~~vv~ 157 (199)
+...+.+|.+|||=+=.+||++|....-+.+ .....+|+-|. .+. ..|++ |.+.|+.++.
T Consensus 61 l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~--------~~~~~lILqP~------~~~---~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 61 LKPGEDVDTIVIAGMGGELIIEILEAGPEKL--------SSAKRLILQPN------THA---YELRRWLYENGFEIID 121 (205)
T ss_dssp --GGG---EEEEEEE-HHHHHHHHHHTGGGG--------TT--EEEEEES------S-H---HHHHHHHHHTTEEEEE
T ss_pred cCCCCCCCEEEEecCCHHHHHHHHHhhHHHh--------ccCCeEEEeCC------CCh---HHHHHHHHHCCCEEEE
Confidence 3333348999999999999999877665422 12347888887 444 33443 6777888775
No 151
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=25.90 E-value=85 Score=28.50 Aligned_cols=71 Identities=20% Similarity=0.086 Sum_probs=41.0
Q ss_pred HhcCCCcEEEEeccChhhhhChHHHHHH--HHHHHCCCEEeCCCCcc------------------cccCCCCCCCCCChH
Q 029085 118 AWDYNKPLFVAPAMNTFMWNNPFTERHL--MSIDELGISLIPPVSKR------------------LACGDYGNGAMAEPS 177 (199)
Q Consensus 118 a~~~~~Pvvi~P~mn~~m~~~p~~~~nl--~~L~~~G~~vv~P~~g~------------------~a~g~~g~~~~~~~e 177 (199)
|+..+|.|.++-- |+-++.-++ +.+++.|..++|-++-- +-.+.-|.-|-.+.+
T Consensus 109 Ai~aGK~iaLANK------EsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L~~~~~~~v~~iiLTASGGpFR~~~~~ 182 (385)
T COG0743 109 AIKAGKTIALANK------ESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCLQGETQKGVKKIILTASGGPFRDKSLE 182 (385)
T ss_pred HHHcCCceeecch------hhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHcCccccCcceEEEEecCCCCcCCCCHH
Confidence 3445788877632 333333333 45788899999855410 112223445556667
Q ss_pred HHHH-HHHHhccCCCCCC
Q 029085 178 LIYS-TVRLFAESRNQSG 194 (199)
Q Consensus 178 ~i~~-~v~~~~~~~~l~~ 194 (199)
++-. ++.+++.+..|+=
T Consensus 183 ~L~~VT~eqAl~HPnWsM 200 (385)
T COG0743 183 ELANVTPEQALKHPNWSM 200 (385)
T ss_pred HHccCCHHHHhcCCCCCC
Confidence 7776 6677887777763
No 152
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=25.86 E-value=1.6e+02 Score=25.24 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=53.2
Q ss_pred ccEEEEccCCHHHHHHHHhcc---cCcHHHHHHHHhcCCCcEEEEecc------ChhhhhChHHHHHHHHHHHCC--CE-
Q 029085 87 ADIMVIAPLSANTLGKIAGGL---CDNLLTCIVRAWDYNKPLFVAPAM------NTFMWNNPFTERHLMSIDELG--IS- 154 (199)
Q Consensus 87 aD~~vVaPaTanTlaKiA~Gi---aDnllt~~~~a~~~~~Pvvi~P~m------n~~m~~~p~~~~nl~~L~~~G--~~- 154 (199)
+|++..==-.=|+.=|=..|+ .|+.+..+..-...+.. ++|.. -.-.|+ -+.|+-|.+.. +.
T Consensus 111 vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~ir--vvpHitiGL~~gki~~e----~kaIdiL~~~~~DalV 184 (275)
T COG1856 111 VDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIR--VVPHITIGLDFGKIHGE----FKAIDILVNYEPDALV 184 (275)
T ss_pred CcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCce--eceeEEEEeccCcccch----HHHHHHHhcCCCCeEE
Confidence 677766666778888888999 54444332211112322 23432 222343 24677777653 22
Q ss_pred --EeCCCCcccccCCCCCCCCCChHHHHHHHHHh
Q 029085 155 --LIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF 186 (199)
Q Consensus 155 --vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~ 186 (199)
++-|.+|. ..+...+|++|+++..++.+
T Consensus 185 l~vliPtpGt----km~~~~pp~~eE~i~v~~~A 214 (275)
T COG1856 185 LVVLIPTPGT----KMGNSPPPPVEEAIKVVKYA 214 (275)
T ss_pred EEEEecCCch----hccCCCCcCHHHHHHHHHHH
Confidence 33476664 67789999999998877543
No 153
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.72 E-value=92 Score=23.91 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=9.0
Q ss_pred ccccccEEEEccCC
Q 029085 83 LRRWADIMVIAPLS 96 (199)
Q Consensus 83 l~~~aD~~vVaPaT 96 (199)
+.+.+|..+..|..
T Consensus 120 l~~~ad~~l~~~~~ 133 (154)
T TIGR00441 120 MAGLADIELRVPHF 133 (154)
T ss_pred hhhhCCEEEEeCCC
Confidence 34567777777654
No 154
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=25.65 E-value=56 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=22.7
Q ss_pred EEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 13 LLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 13 ll~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
++|.|||++.. ++++++...+.++|..+.-.
T Consensus 1 ILGsTGSIG~q-tLdVi~~~~d~f~v~~Laa~ 31 (383)
T PRK12464 1 ILGSTGSIGTS-ALDVVSAHPEHFKVVGLTAN 31 (383)
T ss_pred CCccccHHHHH-HHHHHHhCccccEEEEEECC
Confidence 46899998875 77888877666777766543
No 155
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=25.55 E-value=82 Score=21.61 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=19.5
Q ss_pred CCCCcEEEEEcChHHHHH--HHHHHHHh
Q 029085 7 LRKPRILLAASGSVAAIK--FGNLCHCF 32 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~--~~~li~~L 32 (199)
++..|.+-|+||+++-|. -+.++|.+
T Consensus 8 s~~nr~iaGVcgGla~yf~id~tlVRll 35 (70)
T COG1983 8 SRKNRMIAGVCGGLAEYFGIDPTLVRLL 35 (70)
T ss_pred CccCCEeeeeehhHHHHhCCChHHHHHH
Confidence 445688999999999987 44466655
No 156
>PLN00200 argininosuccinate synthase; Provisional
Probab=25.16 E-value=1.4e+02 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccH
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A 46 (199)
|++|+++++||+....-+..+++. + |++|..+.=+.+
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e--~~G~eViav~id~G 41 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRE--NYGCEVVCFTADVG 41 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHH--hhCCeEEEEEEECC
Confidence 457999999999988875555543 3 778877765544
No 157
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=25.12 E-value=2.4e+02 Score=24.74 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=39.9
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 161 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g 161 (199)
++...+|++|.-| | ..++++|+..++|+|+.+..+.+. ..|.+.+.+.|.-+..
T Consensus 278 ~l~~aaDv~V~~~-----------g-----~~ti~EAma~g~PvI~~~~~pgqe------~gn~~~i~~~g~g~~~---- 331 (382)
T PLN02605 278 EWMGACDCIITKA-----------G-----PGTIAEALIRGLPIILNGYIPGQE------EGNVPYVVDNGFGAFS---- 331 (382)
T ss_pred HHHHhCCEEEECC-----------C-----cchHHHHHHcCCCEEEecCCCccc------hhhHHHHHhCCceeec----
Confidence 4556799999632 2 123457777899999987532110 1355666656555432
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 162 RLACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 162 ~~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
.+++++.+.+...+.
T Consensus 332 ------------~~~~~la~~i~~ll~ 346 (382)
T PLN02605 332 ------------ESPKEIARIVAEWFG 346 (382)
T ss_pred ------------CCHHHHHHHHHHHHc
Confidence 255666666665554
No 158
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=25.12 E-value=1.3e+02 Score=25.11 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
.+++++++||++...-+..++... |.+|..+.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~--g~~v~av~ 43 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA--GTEVLAIT 43 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh--CCCEEEEE
Confidence 468999999999988766666554 66666444
No 159
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=24.61 E-value=1.1e+02 Score=25.34 Aligned_cols=36 Identities=14% Similarity=-0.029 Sum_probs=25.7
Q ss_pred CcEEEEEc-----ChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 10 PRILLAAS-----GSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 10 k~ill~iT-----Gs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
|||++.+| .+.-...+..-...|++ |++|.++-.+.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999888 44444556666677776 99999887644
No 160
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=24.46 E-value=1.8e+02 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=22.6
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
.+|+|.+.-+|+.+.. +++.|++ |++|.+...+.
T Consensus 2 ~~kkIgiIG~G~mG~A----iA~~L~~sG~~Viv~~~~~ 36 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHA----QALNLRDSGLNVIVGLRKG 36 (314)
T ss_pred CcCEEEEEeEcHHHHH----HHHHHHHCCCeEEEEECcC
Confidence 4678988889988876 3444544 77765555443
No 161
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.26 E-value=1.3e+02 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEe
Q 029085 7 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVA 42 (199)
Q Consensus 7 ~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~ 42 (199)
..++.+.+..+|+.. ..+.+..+.|++ |.++.++=
T Consensus 7 ~~g~di~iia~G~~~-~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 7 REGADITIIAYGSMV-EEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp ESSSSEEEEEETTHH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred eCCCCEEEEeehHHH-HHHHHHHHHHHHcCCceeEEe
Confidence 456789999999864 558888888875 77777653
No 162
>PRK06988 putative formyltransferase; Provisional
Probab=24.08 E-value=1.2e+02 Score=26.32 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=22.7
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhh-cCCeEEEEeccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKS 45 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~-~g~eV~vv~T~~ 45 (199)
.||++..|+..+.. .++.|. ++++|..|+|+.
T Consensus 3 mkIvf~Gs~~~a~~----~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHNVGVR----CLQVLLARGVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcHHHHH----HHHHHHhCCCCEEEEEcCC
Confidence 58999888876554 444444 378999999863
No 163
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=23.94 E-value=1.6e+02 Score=23.89 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=24.9
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEeccc
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKS 45 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~ 45 (199)
+||.|.++|..+..+ .+++.+.+ .++|.+++|+.
T Consensus 2 ~ki~vl~sg~gs~~~--~ll~~~~~~~~~~~I~~vvs~~ 38 (200)
T PRK05647 2 KRIVVLASGNGSNLQ--AIIDACAAGQLPAEIVAVISDR 38 (200)
T ss_pred ceEEEEEcCCChhHH--HHHHHHHcCCCCcEEEEEEecC
Confidence 589999998877765 56666654 36888888874
No 164
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=23.82 E-value=88 Score=29.11 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
++-.++|.|||++.- ++++++...+.++|..+...
T Consensus 58 KkI~ILGSTGSIGtq-tLdVI~~~pd~f~vvaLaag 92 (454)
T PLN02696 58 KPISLLGSTGSIGTQ-TLDIVAENPDKFKVVALAAG 92 (454)
T ss_pred cEEEEecCCcHhhHH-HHHHHHhCccccEEEEEECC
Confidence 445678899999875 77888876555676665543
No 165
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=1.2e+02 Score=27.59 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCCcEEEEeccChhhhhChH-HHHHH-HHHHHC-CCEEeCCCCcccccCCCCCCCCCChHHHHHHHH
Q 029085 121 YNKPLFVAPAMNTFMWNNPF-TERHL-MSIDEL-GISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 184 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p~-~~~nl-~~L~~~-G~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~ 184 (199)
.+.|||+-=+--..+.+++. +.+++ +.|++- |+..+.=..+++.|++.. +..++++.+.
T Consensus 265 S~APVIFSHSsA~~vcns~rNVPDdVL~llk~NgGvVMVnfy~~~isc~~~A-----~v~~v~~Hi~ 326 (419)
T KOG4127|consen 265 SRAPVIFSHSSAYSVCNSSRNVPDDVLQLLKENGGVVMVNFYPGFISCSDRA-----TVSDVADHIN 326 (419)
T ss_pred hcCceEeecccHHHHhcCccCCcHHHHHHHhhcCCEEEEEeecccccCCCcc-----cHHHHHHHHH
Confidence 46799998776667777761 22233 345665 777777777888887543 4666666553
No 166
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=23.55 E-value=97 Score=23.07 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=26.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
+|+++.|||-...-++.++..+.. ..++.++..+.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCC
Confidence 589999999988887777766532 2377777766554
No 167
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.54 E-value=1.7e+02 Score=24.91 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=33.5
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhc
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFID 51 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~ 51 (199)
|||+.-+++++-.- +.-+++.|++ +++++++.++....+++
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 79999999998875 6668888876 68999999987776664
No 168
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=23.39 E-value=1.6e+02 Score=25.50 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCcEEEEEcChHHHHH---HHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCcccccccc
Q 029085 9 KPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELR 84 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~---~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~ 84 (199)
++-..+|+||+.++=| +-.+++.+++ |..|-|+.-+....|- +-.++-|. +---++.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t-------GGAlLGDR------------iRM~~~~ 87 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT-------GGALLGDR------------IRMQELS 87 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC----------SS--G------------GGCHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC-------CCcccccH------------HHhcCcC
Confidence 4567899999999877 4457777775 8899988755444332 22222221 1111233
Q ss_pred ccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEE
Q 029085 85 RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 128 (199)
Q Consensus 85 ~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~ 128 (199)
....+|+=-=+|-.+++-++.-..|-+ .+|.+.+ .-+|++
T Consensus 88 ~d~~vfIRS~atRG~lGGls~~t~~~v--~ll~aaG--~D~Iii 127 (266)
T PF03308_consen 88 RDPGVFIRSMATRGSLGGLSRATRDAV--RLLDAAG--FDVIII 127 (266)
T ss_dssp TSTTEEEEEE---SSHHHHHHHHHHHH--HHHHHTT---SEEEE
T ss_pred CCCCEEEeecCcCCCCCCccHhHHHHH--HHHHHcC--CCEEEE
Confidence 356677777788888887776665533 2345543 344444
No 169
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=23.20 E-value=1.7e+02 Score=23.09 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=22.3
Q ss_pred HhcCCCcEEEEeccC---hhhhhChHHHHHHH-HHHHCCCE-EeCCCCc
Q 029085 118 AWDYNKPLFVAPAMN---TFMWNNPFTERHLM-SIDELGIS-LIPPVSK 161 (199)
Q Consensus 118 a~~~~~Pvvi~P~mn---~~m~~~p~~~~nl~-~L~~~G~~-vv~P~~g 161 (199)
+.+.+||+|++|+-. .-|-+| |..|. +|.+.|+. ...|..+
T Consensus 81 ~~rl~kplIv~pr~s~y~elvDdH---Qvela~klae~~~vv~~spte~ 126 (161)
T COG5017 81 LLRLDKPLIVVPRSSQYQELVDDH---QVELALKLAEINYVVACSPTEL 126 (161)
T ss_pred HhhcCCcEEEEECchhHHHhhhhH---HHHHHHHHHhcCceEEEcCCch
Confidence 345689999999821 112111 12222 47777665 4556554
No 170
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.95 E-value=1.8e+02 Score=24.70 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=33.9
Q ss_pred cEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhch
Q 029085 11 RILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDR 52 (199)
Q Consensus 11 ~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~ 52 (199)
||||.-+++++-.- +.-+++.|++ +++|+++.++....++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 57888888888775 6668899985 689999999988887763
No 171
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=22.93 E-value=1.5e+02 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=22.9
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
|+++++||+....-+..+++.. +.+|..+.-+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~--~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE--GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc--CCcEEEEEEE
Confidence 6899999999888766665542 6677765544
No 172
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=22.72 E-value=98 Score=18.71 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.6
Q ss_pred hChHHHHHHHHHHHCCCE
Q 029085 137 NNPFTERHLMSIDELGIS 154 (199)
Q Consensus 137 ~~p~~~~nl~~L~~~G~~ 154 (199)
..+.+.+|++.|++.|+.
T Consensus 28 s~~~vs~hL~~L~~~glV 45 (47)
T PF01022_consen 28 SQSTVSHHLKKLREAGLV 45 (47)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHCcCe
Confidence 456888999999999975
No 173
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.55 E-value=1e+02 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.0
Q ss_pred CCCChHHHHHHHHHhcc
Q 029085 172 AMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 172 ~~~~~e~i~~~v~~~~~ 188 (199)
+..+++|+.+.+..++.
T Consensus 218 ~~~~~~d~a~~i~~l~~ 234 (256)
T PRK12745 218 RWGEPEDVARAVAALAS 234 (256)
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 34578898887776654
No 174
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=22.41 E-value=95 Score=21.49 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=26.9
Q ss_pred ccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 029085 107 LCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP 158 (199)
Q Consensus 107 iaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P 158 (199)
++|-|.... .|...+.||++++ +. -.+.+...|+.+.-..+++++.
T Consensus 36 ~~Dalsa~~-~a~~~~~PIll~~--~~---l~~~~~~~l~~~~~~~v~iiGg 81 (92)
T PF04122_consen 36 FADALSASP-LAAKNNAPILLVN--NS---LPSSVKAFLKSLNIKKVYIIGG 81 (92)
T ss_pred hhhhhhhHH-HHHhcCCeEEEEC--CC---CCHHHHHHHHHcCCCEEEEECC
Confidence 556544322 2333678999998 32 2345556666665557777754
No 175
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.39 E-value=1.3e+02 Score=21.54 Aligned_cols=37 Identities=19% Similarity=0.070 Sum_probs=26.9
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEeccc
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKS 45 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~ 45 (199)
....+++.++-+.......+.++.+++ |..| +.+|.+
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i~iT~~ 89 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLRFAKERGAPV-ILITSN 89 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-EEEESS
T ss_pred cccceeEeeeccccchhhhhhhHHHHhcCCeE-EEEeCC
Confidence 345788888877777778888888876 7777 555543
No 176
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=22.34 E-value=1.1e+02 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=19.4
Q ss_pred EEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecc
Q 029085 12 ILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATK 44 (199)
Q Consensus 12 ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~ 44 (199)
++.|.||.++.. +++.|.+ |++|+++..+
T Consensus 3 lVtGatG~iG~~----vv~~L~~~g~~V~~~~R~ 32 (285)
T TIGR03649 3 LLTGGTGKTASR----IARLLQAASVPFLVASRS 32 (285)
T ss_pred EEEcCCChHHHH----HHHHHHhCCCcEEEEeCC
Confidence 566677777665 4555554 8999887654
No 177
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=22.20 E-value=4.4e+02 Score=23.91 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=48.9
Q ss_pred ccccccccc-ccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhc-CCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE
Q 029085 78 VLHIELRRW-ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD-YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL 155 (199)
Q Consensus 78 ~~h~~l~~~-aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~-~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~v 155 (199)
+.|+...|- .-+-||+|.-.. |.|.. .++ .++||.++.-.|..---.|...+.+++|++.|+.+
T Consensus 187 IpHv~iiRi~TR~pvv~P~RIt----------~~L~~----~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~aGv~l 252 (369)
T COG1509 187 IPHVKIIRIGTRLPVVLPQRIT----------DELCE----ILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDAGVPL 252 (369)
T ss_pred CCceeEEEeecccceechhhcc----------HHHHH----HHhccCceEEEEcccCChhhcCHHHHHHHHHHHHcCcee
Confidence 567765432 356788887543 33332 232 36999999999888778888999999999999999
Q ss_pred eCC
Q 029085 156 IPP 158 (199)
Q Consensus 156 v~P 158 (199)
+.-
T Consensus 253 ~NQ 255 (369)
T COG1509 253 LNQ 255 (369)
T ss_pred ecc
Confidence 874
No 178
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.08 E-value=4.5e+02 Score=21.58 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=60.8
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHH--HHhchhcCCCCCeeEeCc-cchhccccCCCcccccccccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSL--HFIDRAALPKDVIFYTDE-DEWATWNKIGDSVLHIELRRW 86 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~--~fv~~~~l~~~~~v~~~~-~~~~~~~~~~~~~~h~~l~~~ 86 (199)
++++.-.|-.+.. +.+.|.+ |++|.++-.+... ++.+.+ + ...++..+ .+-.. ..... .+.
T Consensus 2 ~iiIiG~G~vG~~----va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-~--~~~~v~gd~t~~~~-------L~~ag-i~~ 66 (225)
T COG0569 2 KIIIIGAGRVGRS----VARELSEEGHNVVLIDRDEERVEEFLADE-L--DTHVVIGDATDEDV-------LEEAG-IDD 66 (225)
T ss_pred EEEEECCcHHHHH----HHHHHHhCCCceEEEEcCHHHHHHHhhhh-c--ceEEEEecCCCHHH-------HHhcC-CCc
Confidence 5666666666554 6777765 8999988876543 333311 1 12233221 11000 11112 246
Q ss_pred ccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhc-CCCcEEEEeccChhhhhChHHHHHHHHHHHCC-CEEeCCCC
Q 029085 87 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD-YNKPLFVAPAMNTFMWNNPFTERHLMSIDELG-ISLIPPVS 160 (199)
Q Consensus 87 aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~-~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G-~~vv~P~~ 160 (199)
+|+++++ |-|-.- |++.+. .+.. .+.|-+++=. .+| .|.+.|+..| -.++.|..
T Consensus 67 aD~vva~--t~~d~~--------N~i~~~-la~~~~gv~~viar~------~~~---~~~~~~~~~g~~~ii~Pe~ 122 (225)
T COG0569 67 ADAVVAA--TGNDEV--------NSVLAL-LALKEFGVPRVIARA------RNP---EHEKVLEKLGADVIISPEK 122 (225)
T ss_pred CCEEEEe--eCCCHH--------HHHHHH-HHHHhcCCCcEEEEe------cCH---HHHHHHHHcCCcEEECHHH
Confidence 8998886 211000 122222 2332 5789889887 666 6677777778 44666643
No 179
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=21.82 E-value=1.3e+02 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=25.9
Q ss_pred CcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085 123 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK 161 (199)
Q Consensus 123 ~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g 161 (199)
-||+++ .|.-+-.+..+..=++.+..+|++||.|..-
T Consensus 17 yPVv~f--~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~ 53 (259)
T PF12740_consen 17 YPVVLF--LHGFLLINSWYSQLLEHVASHGYIVVAPDLY 53 (259)
T ss_pred cCEEEE--eCCcCCCHHHHHHHHHHHHhCceEEEEeccc
Confidence 477776 3444444445667778899999999999843
No 180
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=21.78 E-value=1.5e+02 Score=26.18 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=17.0
Q ss_pred EEcChHHHHHHHHHHHHhhc-CCeEEEEec
Q 029085 15 AASGSVAAIKFGNLCHCFSE-WAEVRAVAT 43 (199)
Q Consensus 15 ~iTGs~~~~~~~~li~~L~~-g~eV~vv~T 43 (199)
.|||+.+.+ .-.+++.|.+ |++|..+-.
T Consensus 25 lVtGgtGfI-G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 25 CITGAGGFI-ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred EEECCccHH-HHHHHHHHHhCCCEEEEEEe
Confidence 455554433 3357777764 899987653
No 181
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=21.74 E-value=1.1e+02 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=18.4
Q ss_pred CCCCcEEE-EEcChHHHHHHHHHHHHhh-cCCeEEEEec
Q 029085 7 LRKPRILL-AASGSVAAIKFGNLCHCFS-EWAEVRAVAT 43 (199)
Q Consensus 7 ~~~k~ill-~iTGs~~~~~~~~li~~L~-~g~eV~vv~T 43 (199)
..++||+| |.||.++. .+++.|. +|++|.++..
T Consensus 8 ~~~~~vLVtG~~GfIG~----~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGS----WLVKLLLQRGYTVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHH----HHHHHHHHCCCEEEEEeC
Confidence 33556433 33444444 4666665 4899887643
No 182
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=21.36 E-value=5.5e+02 Score=22.32 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=66.2
Q ss_pred cEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEe-cccH-HHHhchhcCCCCCeeEeCccchhccccCCCccccccccccc
Q 029085 11 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVA-TKSS-LHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWA 87 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~-T~~A-~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~a 87 (199)
||.|.-.|..+.. ..+.|.+ |++|+|.- |+.+ .+++.... ..+.. ...+....+
T Consensus 2 kIafIGLG~MG~p----mA~~L~~aG~~v~v~~r~~~ka~~~~~~~G----a~~a~---------------s~~eaa~~a 58 (286)
T COG2084 2 KIAFIGLGIMGSP----MAANLLKAGHEVTVYNRTPEKAAELLAAAG----ATVAA---------------SPAEAAAEA 58 (286)
T ss_pred eEEEEcCchhhHH----HHHHHHHCCCEEEEEeCChhhhhHHHHHcC----CcccC---------------CHHHHHHhC
Confidence 5666667766654 3344543 99999886 4343 44443211 11111 113556789
Q ss_pred cEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHH-HHHHCCCEEeC-CCCc
Q 029085 88 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLM-SIDELGISLIP-PVSK 161 (199)
Q Consensus 88 D~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~-~L~~~G~~vv~-P~~g 161 (199)
|+++..=-....+-.+..| .|.++. .++. ..++|- |++ -+|...+-+. .+++.|..+++ |+.|
T Consensus 59 DvVitmv~~~~~V~~V~~g-~~g~~~----~~~~-G~i~ID--mST---isp~~a~~~a~~~~~~G~~~lDAPVsG 123 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFG-ENGLLE----GLKP-GAIVID--MST---ISPETARELAAALAAKGLEFLDAPVSG 123 (286)
T ss_pred CEEEEecCCHHHHHHHHhC-ccchhh----cCCC-CCEEEE--CCC---CCHHHHHHHHHHHHhcCCcEEecCccC
Confidence 9988877777777777765 222322 1212 233333 444 4666556555 57889999998 7765
No 183
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=21.30 E-value=93 Score=28.25 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=28.9
Q ss_pred CCcEEEEeccChhhhhChHHHHHH------HHHHHCCCEEeCCCCcccccCCCCCCCCCC
Q 029085 122 NKPLFVAPAMNTFMWNNPFTERHL------MSIDELGISLIPPVSKRLACGDYGNGAMAE 175 (199)
Q Consensus 122 ~~Pvvi~P~mn~~m~~~p~~~~nl------~~L~~~G~~vv~P~~g~~a~g~~g~~~~~~ 175 (199)
+++++++|. +..+.+.+ +.|.+.|+.|.+|..+ +|-..+.+.+.+
T Consensus 299 ~v~~~v~P~-------S~~v~~~a~~~Gl~~~l~~aG~~i~~~gC~--~C~G~~~~~~~~ 349 (389)
T cd01351 299 GVRLIVTPG-------SRMVYATLSREGYYEILVDSGARILPPGCG--PCMGNGARLVAD 349 (389)
T ss_pred CceEEEECC-------CHHHHHHHHHcChHHHHHHCCCEEeCCCCc--ccCCCCCCcCCC
Confidence 367899998 33333333 4588999999998665 565544444433
No 184
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=21.30 E-value=4.4e+02 Score=21.17 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=22.8
Q ss_pred cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEec
Q 029085 82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPA 130 (199)
Q Consensus 82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~ 130 (199)
++...+|+++..... +..-..+++|+..++|+|..+.
T Consensus 271 ~~~~~~di~i~~~~~------------~~~~~~~~Ea~~~g~pvI~~~~ 307 (374)
T cd03801 271 ALYAAADVFVLPSLY------------EGFGLVLLEAMAAGLPVVASDV 307 (374)
T ss_pred HHHHhcCEEEecchh------------ccccchHHHHHHcCCcEEEeCC
Confidence 445678987654322 2333445567777999987653
No 185
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=21.28 E-value=1.4e+02 Score=22.50 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=35.9
Q ss_pred ccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhc-CCC-cEEEEeccChhhhhChHHHHHHHHHHHCCC
Q 029085 83 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD-YNK-PLFVAPAMNTFMWNNPFTERHLMSIDELGI 153 (199)
Q Consensus 83 l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~-~~~-Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~ 153 (199)
+.+.+|++|+.|--..|+--+..-++ ...++ .++ |++++= ....|+.- .+.++++.+.|+
T Consensus 50 m~~~sda~I~lPGG~GTl~El~~~~~-------~~~l~~~~~~Piil~~--~~g~w~~l--~~~l~~~~~~g~ 111 (133)
T PF03641_consen 50 MIESSDAFIALPGGIGTLDELFEALT-------LMQLGRHNKVPIILLN--IDGFWDPL--LEFLDRMIEEGF 111 (133)
T ss_dssp HHHHESEEEEES-SHHHHHHHHHHHH-------HHHTTSSTS-EEEEEE--CGGCCHHH--HHHHHHHHHTTS
T ss_pred HHHhCCEEEEEecCCchHHHHHHHHH-------HHhhccccCCCEEEeC--CcchHHHH--HHHHHHHHHCCC
Confidence 34569999999999999976532221 11121 244 988873 23467633 355666666664
No 186
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=21.10 E-value=1.8e+02 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 12 ILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 12 ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
+++++||+....-+..++..+ +.++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~--~~~~~~~~ 29 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL--GYQVIAVT 29 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh--CCCEEEEE
Confidence 589999999998777666655 33454443
No 187
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.98 E-value=2.1e+02 Score=25.27 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=37.5
Q ss_pred CCCcEEEEeccChhhhhCh--HHHHHHHHHHHC-C---CEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhcc
Q 029085 121 YNKPLFVAPAMNTFMWNNP--FTERHLMSIDEL-G---ISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 188 (199)
Q Consensus 121 ~~~Pvvi~P~mn~~m~~~p--~~~~nl~~L~~~-G---~~vv~P~~g~~a~g~~g~~~~~~~e~i~~~v~~~~~ 188 (199)
+++||++-=+.-.....|| .+-++++.+++. | +.++++.... |...-++++++++.|..+.+
T Consensus 182 s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~------~~~~~atldd~v~hI~h~v~ 249 (313)
T COG2355 182 SKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAFLRP------GGAARATLDDLVRHIDHFVE 249 (313)
T ss_pred cCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhhccC------CCCCCCCHHHHHHHHHHHHH
Confidence 4789887655555666777 344556677776 4 4455543321 11345689999988876653
No 188
>PRK00919 GMP synthase subunit B; Validated
Probab=20.96 E-value=1.2e+02 Score=26.64 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHH
Q 029085 6 GLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 47 (199)
Q Consensus 6 ~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~ 47 (199)
+..++++++++|||.-..-+..++... .|.++.++.=+++.
T Consensus 18 ~~~~~kVlVa~SGGVDSsvla~la~~~-lG~~v~aV~vD~G~ 58 (307)
T PRK00919 18 EIGDGKAIIALSGGVDSSVAAVLAHRA-IGDRLTPVFVDTGL 58 (307)
T ss_pred HhCCCCEEEEecCCHHHHHHHHHHHHH-hCCeEEEEEEECCC
Confidence 344579999999999888766665442 16778877765554
No 189
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=20.80 E-value=5.2e+02 Score=21.86 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=23.8
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHH
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 47 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~ 47 (199)
...||.+.-+|.++...+..+.+. ..++++..+.+++..
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~ 43 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQ 43 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHH
Confidence 356788888888887543333221 125788777776543
No 190
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.74 E-value=1.9e+02 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=21.6
Q ss_pred HhcCCCcEEEEeccChhhhhChHHHHHH-HHHHHCCCEEe
Q 029085 118 AWDYNKPLFVAPAMNTFMWNNPFTERHL-MSIDELGISLI 156 (199)
Q Consensus 118 a~~~~~Pvvi~P~mn~~m~~~p~~~~nl-~~L~~~G~~vv 156 (199)
.++.+||.|+++. ..+.+|- |..| ++|.+.|+.+-
T Consensus 96 tL~l~KPlivVvN--d~LMDNH--Q~ELA~qL~~egyL~~ 131 (170)
T KOG3349|consen 96 TLRLGKPLIVVVN--DSLMDNH--QLELAKQLAEEGYLYY 131 (170)
T ss_pred HHHcCCCEEEEeC--hHhhhhH--HHHHHHHHHhcCcEEE
Confidence 3446899999975 4444433 2333 36888887653
No 191
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=20.72 E-value=1.2e+02 Score=26.31 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCcEEEEEcChHHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhch
Q 029085 9 KPRILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDR 52 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~-~~~li~~L~~---g~eV~vv~T~~A~~fv~~ 52 (199)
.+||||.-+++++-.- +..+++.|++ +++|++++.+....++..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 4579999999888765 7778899985 689999999888777653
No 192
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=20.68 E-value=1.5e+02 Score=26.58 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.0
Q ss_pred ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
+|.-.+++++|++.||--+- ..+...++ |++|+++-.+-++
T Consensus 86 ~N~lePgd~vLv~~~G~wg~----ra~D~~~r~ga~V~~v~~~~G~ 127 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVSTGTWGQ----RAADCARRYGAEVDVVEADIGQ 127 (385)
T ss_pred HhhcCCCCeEEEEEechHHH----HHHHHHHhhCceeeEEecCccc
Confidence 45566899999999985433 34444444 9999999776654
No 193
>PRK07806 short chain dehydrogenase; Provisional
Probab=20.65 E-value=1.4e+02 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=18.6
Q ss_pred CCCCChHHHHHHHHHhccCCCCCCC
Q 029085 171 GAMAEPSLIYSTVRLFAESRNQSGD 195 (199)
Q Consensus 171 ~~~~~~e~i~~~v~~~~~~~~l~~~ 195 (199)
+++.+++|+.+.+..+++.....|.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~g~ 235 (248)
T PRK07806 211 GKLYTVSEFAAEVARAVTAPVPSGH 235 (248)
T ss_pred cccCCHHHHHHHHHHHhhccccCcc
Confidence 4778999999988877765545553
No 194
>PRK00509 argininosuccinate synthase; Provisional
Probab=20.61 E-value=1.9e+02 Score=26.34 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
+++|++++.||+....-+..+++. + |++|..+.=+.+.
T Consensus 1 ~~~kVvva~SGGlDSsvla~~l~e--~lG~eViavt~d~Gq 39 (399)
T PRK00509 1 MKKKVVLAYSGGLDTSVIIKWLKE--TYGCEVIAFTADVGQ 39 (399)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHH--hhCCeEEEEEEecCC
Confidence 356999999999888765555543 2 7788777655543
No 195
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=20.52 E-value=1.5e+02 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecc
Q 029085 9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK 44 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~ 44 (199)
..||++.-+|+++.+.+-.|.+ .|++|.++.-.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR---AGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh---CCCCeEEEEec
Confidence 3479999999999997665543 28899988753
No 196
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=20.47 E-value=1.5e+02 Score=23.55 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=15.7
Q ss_pred CCCChHHHHHHHHHhccC--CCCCCC
Q 029085 172 AMAEPSLIYSTVRLFAES--RNQSGD 195 (199)
Q Consensus 172 ~~~~~e~i~~~v~~~~~~--~~l~~~ 195 (199)
++.+++|+.+.+..++.. +.+.|+
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~g~ 239 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDEARYITGQ 239 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCc
Confidence 456889999888776643 334553
No 197
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=20.41 E-value=1.4e+02 Score=21.73 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhc-CCeEEEEecccHH
Q 029085 22 AIKFGNLCHCFSE-WAEVRAVATKSSL 47 (199)
Q Consensus 22 ~~~~~~li~~L~~-g~eV~vv~T~~A~ 47 (199)
...+.++++.|.+ |+||.++......
T Consensus 15 e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 15 ERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 3448889999986 9999999665443
No 198
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.37 E-value=1.7e+02 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=23.5
Q ss_pred cEEEEEcChHHHHHHHHHHHHhh-cCCeEEEEecccHH
Q 029085 11 RILLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKSSL 47 (199)
Q Consensus 11 ~ill~iTGs~~~~~~~~li~~L~-~g~eV~vv~T~~A~ 47 (199)
--++|.||-.+.. ++++.. +|+||+.++-..+.
T Consensus 3 IaiIgAsG~~Gs~----i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 3 IAIIGASGKAGSR----ILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred EEEEecCchhHHH----HHHHHHhCCCeeEEEEeChHh
Confidence 3467788877664 555554 59999999876654
No 199
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=20.34 E-value=1.3e+02 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.082 Sum_probs=28.4
Q ss_pred CCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHH
Q 029085 8 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 47 (199)
Q Consensus 8 ~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~ 47 (199)
.+++++++-|||....-++-|+++ .|+||..++-.-++
T Consensus 4 ~~~~vVLAySGgLDTscil~WLke--qGyeViay~AnvGQ 41 (412)
T KOG1706|consen 4 SKKSVVLAYSGGLDTSCILAWLKE--QGYEVIAYLANVGQ 41 (412)
T ss_pred CCceEEEEecCCcCchhhhHHHHh--cCceEEEeeccccc
Confidence 357899999999887765555443 49999999976554
No 200
>PRK08349 hypothetical protein; Validated
Probab=20.34 E-value=1.8e+02 Score=23.25 Aligned_cols=31 Identities=16% Similarity=-0.044 Sum_probs=22.2
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEe
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 42 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~ 42 (199)
+|+++++|||....-+..++.+ +|++|..+.
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~--~g~~v~av~ 31 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR--RGVEVYPVH 31 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH--cCCeEEEEE
Confidence 4789999999888776655543 377777544
No 201
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.32 E-value=75 Score=28.14 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCcEEEEEcChHHHHH---HHHHHHHhhc-CCeEEEEecccHHHH
Q 029085 9 KPRILLAASGSVAAIK---FGNLCHCFSE-WAEVRAVATKSSLHF 49 (199)
Q Consensus 9 ~k~ill~iTGs~~~~~---~~~li~~L~~-g~eV~vv~T~~A~~f 49 (199)
++-.++||||..++=| +-.|++.|++ |+.|-|+.=+....|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 3446889999998877 4447788876 999998875544433
No 202
>PRK10637 cysG siroheme synthase; Provisional
Probab=20.27 E-value=1.4e+02 Score=27.37 Aligned_cols=35 Identities=31% Similarity=0.236 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEec
Q 029085 6 GLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT 43 (199)
Q Consensus 6 ~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T 43 (199)
...+|++||.-.|.++..|+-.+++ .|++|+||.-
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp 43 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLD---AGARLTVNAL 43 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcC
Confidence 3567899999888888887654444 3889998753
No 203
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=20.25 E-value=1.3e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhc-CCeEEEEecccH
Q 029085 23 IKFGNLCHCFSE-WAEVRAVATKSS 46 (199)
Q Consensus 23 ~~~~~li~~L~~-g~eV~vv~T~~A 46 (199)
..+.++++.|.+ |++|+++....-
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~ 29 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPD 29 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCC
Confidence 347788999986 999998875433
No 204
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=20.18 E-value=3.3e+02 Score=19.29 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.4
Q ss_pred hhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085 135 MWNNPFTERHLMSIDELGISLIPPVSK 161 (199)
Q Consensus 135 m~~~p~~~~nl~~L~~~G~~vv~P~~g 161 (199)
-++.|.+.+--+.|++.|+.|+.|..-
T Consensus 12 ~~N~~~f~~~a~~L~~~G~~vvnPa~~ 38 (92)
T PF14359_consen 12 DYNRPAFNAAAKRLRAKGYEVVNPAEL 38 (92)
T ss_pred chHHHHHHHHHHHHHHCCCEEeCchhh
Confidence 445677777778899999999999764
No 205
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=20.10 E-value=1.2e+02 Score=24.98 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=26.3
Q ss_pred CcEEEEEcChHHHHHHHHHHHHhhc---CCeEEEEecccH
Q 029085 10 PRILLAASGSVAAIKFGNLCHCFSE---WAEVRAVATKSS 46 (199)
Q Consensus 10 k~ill~iTGs~~~~~~~~li~~L~~---g~eV~vv~T~~A 46 (199)
+||.+-+||+.+.+. .++...+. ..+|..++|+.+
T Consensus 1 ~ki~VlaSG~GSNlq--aiida~~~~~~~a~i~~Visd~~ 38 (200)
T COG0299 1 KKIAVLASGNGSNLQ--AIIDAIKGGKLDAEIVAVISDKA 38 (200)
T ss_pred CeEEEEEeCCcccHH--HHHHHHhcCCCCcEEEEEEeCCC
Confidence 489999999999987 34444443 479999999874
No 206
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.02 E-value=95 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred HHHHHHHhhc-CCeEEEEecccHHHHhc
Q 029085 25 FGNLCHCFSE-WAEVRAVATKSSLHFID 51 (199)
Q Consensus 25 ~~~li~~L~~-g~eV~vv~T~~A~~fv~ 51 (199)
++.+-.+|++ |.+|.|..|++|.+++.
T Consensus 21 aiYls~klkkkgf~v~VaateAa~kLle 48 (148)
T COG4081 21 AIYLSHKLKKKGFDVTVAATEAALKLLE 48 (148)
T ss_pred HHHHHHHhhccCccEEEecCHhhheeee
Confidence 4445667775 99999999999998765
Done!