Your job contains 1 sequence.
>029088
MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQ
NSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRR
PLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGL
VRRIREIAIRRNGTYLIFF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029088
(199 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086889 - symbol:AT3G18580 species:3702 "Arabi... 570 2.9e-55 1
TAIR|locus:2136083 - symbol:MTSSB "mitochondrially target... 241 2.1e-20 1
UNIPROTKB|P09380 - symbol:ssbp1-a "Single-stranded DNA-bi... 129 1.6e-08 1
UNIPROTKB|E2RST4 - symbol:SSBP1 "Single-stranded DNA-bind... 125 4.2e-08 1
UNIPROTKB|E1BTE0 - symbol:SSBP1 "Single-stranded DNA-bind... 124 5.3e-08 1
UNIPROTKB|F1N1S0 - symbol:SSBP1 "Single-stranded DNA-bind... 124 5.3e-08 1
UNIPROTKB|F1SRQ7 - symbol:SSBP1 "Single-stranded DNA-bind... 123 6.8e-08 1
UNIPROTKB|Q95KK4 - symbol:SSBP1 "Single-stranded DNA-bind... 123 6.8e-08 1
UNIPROTKB|P09381 - symbol:ssbp1-b "Single-stranded DNA-bi... 122 8.7e-08 1
ZFIN|ZDB-GENE-050417-340 - symbol:ssbp1 "single-stranded ... 122 8.7e-08 1
UNIPROTKB|Q04837 - symbol:SSBP1 "Single-stranded DNA-bind... 118 2.3e-07 1
UNIPROTKB|Q5RDQ0 - symbol:SSBP1 "Single-stranded DNA-bind... 118 2.3e-07 1
UNIPROTKB|Q32PB0 - symbol:SSBP1 "Single-stranded DNA-bind... 117 2.9e-07 1
UNIPROTKB|C9K0U8 - symbol:SSBP1 "Single-stranded DNA-bind... 117 2.9e-07 1
UNIPROTKB|E7EUY5 - symbol:SSBP1 "Single-stranded DNA-bind... 117 2.9e-07 1
RGD|3760 - symbol:Ssbp1 "single-stranded DNA binding prot... 115 4.8e-07 1
UNIPROTKB|P28042 - symbol:Ssbp1 "Single-stranded DNA-bind... 115 4.8e-07 1
MGI|MGI:1920040 - symbol:Ssbp1 "single-stranded DNA bindi... 114 6.1e-07 1
TIGR_CMR|NSE_0759 - symbol:NSE_0759 "single-strand bindin... 112 1.0e-06 1
TIGR_CMR|CBU_0271 - symbol:CBU_0271 "single-strand bindin... 114 1.8e-06 1
UNIPROTKB|Q9KUW2 - symbol:ssb "Single-stranded DNA-bindin... 118 3.2e-06 1
TIGR_CMR|VC_0397 - symbol:VC_0397 "single-strand binding ... 118 3.2e-06 1
UNIPROTKB|P0AGE0 - symbol:ssb "ssDNA-binding protein" spe... 117 4.7e-06 1
TIGR_CMR|ECH_0815 - symbol:ECH_0815 "single-strand bindin... 110 1.3e-05 1
GENEDB_PFALCIPARUM|PFE0435c - symbol:PFE0435c "single-str... 119 1.7e-05 1
UNIPROTKB|Q8I415 - symbol:PFE0435c "Single-strand binding... 119 1.7e-05 1
TIGR_CMR|APH_0465 - symbol:APH_0465 "single-strand bindin... 104 0.00017 1
TIGR_CMR|SPO_1637 - symbol:SPO_1637 "single-strand bindin... 103 0.00051 1
TIGR_CMR|SO_4028 - symbol:SO_4028 "single-strand binding ... 106 0.00052 1
>TAIR|locus:2086889 [details] [associations]
symbol:AT3G18580 species:3702 "Arabidopsis thaliana"
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0005739 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006260
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AP001303 PANTHER:PTHR10302 KO:K03111 HOGENOM:HOG000238117
IPI:IPI00539604 RefSeq:NP_188488.1 UniGene:At.53373
ProteinModelPortal:Q9LII1 SMR:Q9LII1 PaxDb:Q9LII1 PRIDE:Q9LII1
EnsemblPlants:AT3G18580.1 GeneID:821389 KEGG:ath:AT3G18580
TAIR:At3g18580 eggNOG:NOG325004 InParanoid:Q9LII1 OMA:DREEPHQ
PhylomeDB:Q9LII1 ProtClustDB:CLSN2684390 Genevestigator:Q9LII1
Uniprot:Q9LII1
Length = 217
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 118/193 (61%), Positives = 141/193 (73%)
Query: 1 MAALTRRFYRSLLLNPKFSQSPKPFFTSNIFSSSSRVDSDLDESAIHSDADPLPDSSPTQ 60
MA L+RR YRSLL NP+ SQ+ F T+NI S DSD DE + S +P ++
Sbjct: 5 MATLSRRLYRSLLSNPRISQASMSFCTNNITSPE---DSDFDE--LESPIEPKASDPVSR 59
Query: 61 NSGQQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXX 120
SG++R +RPLENGLD GIFKAILVGQVGQ P+QKKLKSGRTVTLFS+GTGGI
Sbjct: 60 FSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRR 119
Query: 121 XXXXXXXTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGL 180
EYA+R AVQWHRVSVYPERL +V+K++ PG+ IY+EGNLE K+F DP+TGL
Sbjct: 120 PLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGL 179
Query: 181 VRRIREIAIRRNG 193
VRRIRE+AIRRNG
Sbjct: 180 VRRIREVAIRRNG 192
>TAIR|locus:2136083 [details] [associations]
symbol:MTSSB "mitochondrially targeted single-stranded
DNA binding protein" species:3702 "Arabidopsis thaliana"
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AF080120
EMBL:AL049876 EMBL:AL161518 PANTHER:PTHR10302 EMBL:BT004166
EMBL:BT005015 IPI:IPI00534596 PIR:T08185 RefSeq:NP_192844.2
UniGene:At.33588 ProteinModelPortal:Q84J78 SMR:Q84J78 PaxDb:Q84J78
PRIDE:Q84J78 EnsemblPlants:AT4G11060.1 GeneID:826707
KEGG:ath:AT4G11060 GeneFarm:4154 TAIR:At4g11060 eggNOG:NOG329313
HOGENOM:HOG000238117 InParanoid:Q84J78 OMA:AQWHRIA PhylomeDB:Q84J78
ProtClustDB:CLSN2690856 Genevestigator:Q84J78 GermOnline:AT4G11060
Uniprot:Q84J78
Length = 201
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 54/133 (40%), Positives = 85/133 (63%)
Query: 70 DRP-LE-NGLDP-------GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXX 120
+RP L+ +G+DP G+ +AI+ G+VGQ+P+QK L++GRTVT+F++GTGG+
Sbjct: 51 ERPELQPHGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRL 110
Query: 121 XXXXXXXTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGL 180
T QWHR++V+ E LG ++ L S++YVEG++E +V+ND I+
Sbjct: 111 VGA----TNQPK--PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSE 164
Query: 181 VRRIREIAIRRNG 193
V+ I EI +RR+G
Sbjct: 165 VKSIPEICVRRDG 177
>UNIPROTKB|P09380 [details] [associations]
symbol:ssbp1-a "Single-stranded DNA-binding protein 1-A,
mitochondrial" species:8355 "Xenopus laevis" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 EMBL:X59285
EMBL:X83673 EMBL:BC082205 PIR:JC6173 RefSeq:NP_001095241.1
UniGene:Xl.35184 ProteinModelPortal:P09380 SMR:P09380 GeneID:397915
KEGG:xla:397915 CTD:397915 Xenbase:XB-GENE-6252172
HOVERGEN:HBG001181 Uniprot:P09380
Length = 146
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/120 (29%), Positives = 55/120 (45%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ I K L+G+VGQ PV ++ + VT+FSL T + + +
Sbjct: 24 LERSINKVQLLGRVGQDPVMRQAEGKNPVTIFSLATNELWRSGESETFHTAGDVNQKTT- 82
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +H+ G+ + VEG ++ + D VRR I N +L
Sbjct: 83 -WHRISVFRPGLRDVAYQHVKKGARLLVEGKIDYGEYTDKNN--VRRQATTIIADNIIFL 139
>UNIPROTKB|E2RST4 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9615 "Canis lupus familiaris" [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
KO:K03111 CTD:6742 OMA:ITYGEIT EMBL:AAEX03010199
RefSeq:NP_001239208.1 RefSeq:XP_003639657.1 UniGene:Cfa.39495
ProteinModelPortal:E2RST4 Ensembl:ENSCAFT00000006249
GeneID:100855532 GeneID:475524 KEGG:cfa:100855532 KEGG:cfa:475524
NextBio:20851350 Uniprot:E2RST4
Length = 148
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGESETYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IYVEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|E1BTE0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9031 "Gallus gallus" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] [GO:0070584
"mitochondrion morphogenesis" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
KO:K03111 CTD:6742 OMA:ITYGEIT EMBL:AADN02006380 IPI:IPI00593118
RefSeq:XP_416355.1 UniGene:Gga.2863 ProteinModelPortal:E1BTE0
PRIDE:E1BTE0 Ensembl:ENSGALT00000021003 GeneID:418122
KEGG:gga:418122 NextBio:20821329 Uniprot:E1BTE0
Length = 149
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ P+ +++ VT+FSL T + + + +
Sbjct: 27 LERSMNRVQLLGRVGQDPIMRQVDGKNPVTIFSLATNEMWRTGETEVAQTG-DISQKTT- 84
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS +YVEG L+ + D VRR I N +L
Sbjct: 85 -WHRISVFRPGLRDVTYQYVKKGSRLYVEGKLDYGEYTDKNN--VRRQATTIIADNVIFL 141
>UNIPROTKB|F1N1S0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9913 "Bos taurus" [GO:0070584 "mitochondrion morphogenesis"
evidence=IEA] [GO:0051096 "positive regulation of helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584
GO:GO:0051096 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 IPI:IPI00695890 UniGene:Bt.65086 OMA:ITYGEIT
EMBL:DAAA02011751 ProteinModelPortal:F1N1S0
Ensembl:ENSBTAT00000014520 Uniprot:F1N1S0
Length = 148
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENETYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IYVEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|F1SRQ7 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9823 "Sus scrofa" [GO:0070584 "mitochondrion morphogenesis"
evidence=IEA] [GO:0051096 "positive regulation of helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003682 GO:GO:0042645 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584
GO:GO:0051096 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 KO:K03111 OMA:ITYGEIT EMBL:CU914341
RefSeq:XP_003134650.1 Ensembl:ENSSSCT00000017952 GeneID:100512994
KEGG:ssc:100512994 Uniprot:F1SRQ7
Length = 148
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGENEAYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS +YVEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRVYVEGKVDYGEYTDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|Q95KK4 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9986 "Oryctolagus cuniculus" [GO:0003682
"chromatin binding" evidence=ISS] [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:6741 eggNOG:COG0629
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 HOVERGEN:HBG001181
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 HSSP:Q04837 EMBL:AJ311162
RefSeq:NP_001075600.1 UniGene:Ocu.3243 ProteinModelPortal:Q95KK4
SMR:Q95KK4 PRIDE:Q95KK4 GeneID:100008866 Uniprot:Q95KK4
Length = 148
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNETYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IYVEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYMDKNN--VRRQATTIIADNIVFL 140
>UNIPROTKB|P09381 [details] [associations]
symbol:ssbp1-b "Single-stranded DNA-binding protein 1-B,
mitochondrial" species:8355 "Xenopus laevis" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 EMBL:X83674 EMBL:BC133265 PIR:JC6172
RefSeq:NP_001091326.1 UniGene:Xl.75198 ProteinModelPortal:P09381
SMR:P09381 GeneID:100037159 KEGG:xla:100037159 CTD:100037159
Xenbase:XB-GENE-979715 KO:K03111 Uniprot:P09381
Length = 148
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 38/133 (28%), Positives = 58/133 (43%)
Query: 64 QQRESFDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXX 123
Q +S LE ++ K L+G+VGQ PV ++ VT+FSL T +
Sbjct: 17 QSTDSLSAILERSMN----KVQLLGRVGQDPVMRQADGKNPVTIFSLATNELWRSGENEV 72
Query: 124 XXXXTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRR 183
+ + WHRVSV+ L V +H+ G+ + VEG ++ + D VRR
Sbjct: 73 FQPAGDVNQKTT--WHRVSVFRPGLRDVAYQHVKKGARLLVEGKIDYGEYTDKNN--VRR 128
Query: 184 IREIAIRRNGTYL 196
I N +L
Sbjct: 129 QATTIIADNIIFL 141
>ZFIN|ZDB-GENE-050417-340 [details] [associations]
symbol:ssbp1 "single-stranded DNA binding protein
1" species:7955 "Danio rerio" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
ZFIN:ZDB-GENE-050417-340 GO:GO:0005739 GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111
CTD:6742 EMBL:BC092875 IPI:IPI00570084 RefSeq:NP_001017806.1
UniGene:Dr.17626 ProteinModelPortal:Q568F8 SMR:Q568F8 STRING:Q568F8
PRIDE:Q568F8 GeneID:550504 KEGG:dre:550504 InParanoid:Q568F8
NextBio:20879746 ArrayExpress:Q568F8 Bgee:Q568F8 Uniprot:Q568F8
Length = 146
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ I K ++G+VGQ PV ++++ VT+FS+ T + + +
Sbjct: 25 LEKSINKVQILGRVGQDPVMRQVEGRNPVTIFSMATNEMWRSGEGEPVGAG-DVTQKTT- 82
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS I+VEG L+ + D VRR I N +L
Sbjct: 83 -WHRISVFKPGLRDVAYQYVKKGSRIFVEGKLDYGEYVDKNN--VRRQATTIIADNIVFL 139
>UNIPROTKB|Q04837 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9606 "Homo sapiens" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 CTD:6742 OrthoDB:EOG4KSPM4 OMA:ITYGEIT
EMBL:M94556 EMBL:AF277319 EMBL:BC000895 IPI:IPI00029744 PIR:JN0568
RefSeq:NP_001243439.1 RefSeq:NP_001243440.1 RefSeq:NP_001243441.1
RefSeq:NP_001243442.1 RefSeq:NP_003134.1 UniGene:Hs.490394 PDB:1S3O
PDB:2DUD PDB:3ULL PDBsum:1S3O PDBsum:2DUD PDBsum:3ULL
ProteinModelPortal:Q04837 SMR:Q04837 IntAct:Q04837
MINT:MINT-3025472 STRING:Q04837 PhosphoSite:Q04837 DMDM:417811
UCD-2DPAGE:Q04837 PaxDb:Q04837 PeptideAtlas:Q04837 PRIDE:Q04837
DNASU:6742 Ensembl:ENST00000265304 Ensembl:ENST00000465582
Ensembl:ENST00000481508 Ensembl:ENST00000484178
Ensembl:ENST00000498107 GeneID:6742 KEGG:hsa:6742 UCSC:uc003vwo.1
GeneCards:GC07P141440 HGNC:HGNC:11317 HPA:HPA002866 MIM:600439
neXtProt:NX_Q04837 PharmGKB:PA36141 InParanoid:Q04837
PhylomeDB:Q04837 ChiTaRS:SSBP1 EvolutionaryTrace:Q04837
GenomeRNAi:6742 NextBio:26300 ArrayExpress:Q04837 Bgee:Q04837
CleanEx:HS_SSBP1 Genevestigator:Q04837 GermOnline:ENSG00000106028
Uniprot:Q04837
Length = 148
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IY+EG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|Q5RDQ0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9601 "Pongo abelii" [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
GeneTree:ENSGT00390000002796 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 CTD:6742 HOGENOM:HOG000106484
OrthoDB:EOG4KSPM4 OMA:ITYGEIT EMBL:CR857853 RefSeq:NP_001127238.1
UniGene:Pab.19353 HSSP:Q04837 ProteinModelPortal:Q5RDQ0 SMR:Q5RDQ0
PRIDE:Q5RDQ0 Ensembl:ENSPPYT00000021068 GeneID:100174293
KEGG:pon:100174293 InParanoid:Q5RDQ0 Uniprot:Q5RDQ0
Length = 148
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLG-DISQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IY+EG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|Q32PB0 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein,
mitochondrial" species:9913 "Bos taurus" [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003682
GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621
HOVERGEN:HBG001181 KO:K03111 EMBL:BC108189 IPI:IPI00695890
RefSeq:NP_001032543.1 UniGene:Bt.65086 HSSP:P0AGE0
ProteinModelPortal:Q32PB0 SMR:Q32PB0 STRING:Q32PB0 PRIDE:Q32PB0
GeneID:515765 KEGG:bta:515765 CTD:6742 HOGENOM:HOG000106484
InParanoid:Q32PB0 OrthoDB:EOG4KSPM4 NextBio:20871993 Uniprot:Q32PB0
Length = 148
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ T+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPDTIFSLATNEMWRSGENETYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ GS IYVEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|C9K0U8 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739
GO:GO:0006260 GO:GO:0003697 EMBL:AC004918 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOGENOM:HOG000106484 HGNC:HGNC:11317
ChiTaRS:SSBP1 EMBL:AC004979 IPI:IPI00947310 SMR:C9K0U8
STRING:C9K0U8 Ensembl:ENST00000463093 Ensembl:ENST00000571709
Uniprot:C9K0U8
Length = 121
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ GS IY+EG ++ + D
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMD 121
>UNIPROTKB|E7EUY5 [details] [associations]
symbol:SSBP1 "Single-stranded DNA-binding protein"
species:9606 "Homo sapiens" [GO:0003697 "single-stranded DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0070584 "mitochondrion morphogenesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0005739
GO:GO:0006260 GO:GO:0003697 EMBL:AC004918 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HGNC:HGNC:11317 ChiTaRS:SSBP1 EMBL:AC004979
IPI:IPI01014556 SMR:E7EUY5 Ensembl:ENST00000467681
Ensembl:ENST00000576311 Uniprot:E7EUY5
Length = 135
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ GS IY+EG ++ + D
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMD 121
>RGD|3760 [details] [associations]
symbol:Ssbp1 "single-stranded DNA binding protein 1, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0003697 "single-stranded DNA binding"
evidence=IEA;NAS] [GO:0005739 "mitochondrion" evidence=ISO;NAS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA;ISO] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA;ISO] [GO:0070584
"mitochondrion morphogenesis" evidence=IEA;ISO] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
RGD:3760 GO:GO:0005739 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 EMBL:M94557 EMBL:AF043635
EMBL:AF043630 EMBL:AF043631 EMBL:AF043632 EMBL:AF043633 EMBL:AF043634
IPI:IPI00196750 PIR:JN0569 RefSeq:NP_899157.1 UniGene:Rn.106922
ProteinModelPortal:P28042 SMR:P28042 IntAct:P28042 STRING:P28042
PRIDE:P28042 GeneID:54304 KEGG:rno:54304 UCSC:RGD:3760
InParanoid:P28042 NextBio:610960 ArrayExpress:P28042
Genevestigator:P28042 GermOnline:ENSRNOG00000012100 Uniprot:P28042
Length = 151
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNEAYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ G+ I+VEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN--VRRQATTIIADNIIFL 140
>UNIPROTKB|P28042 [details] [associations]
symbol:Ssbp1 "Single-stranded DNA-binding protein,
mitochondrial" species:10116 "Rattus norvegicus" [GO:0003682
"chromatin binding" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=IEA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0070584 "mitochondrion
morphogenesis" evidence=IEA] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 RGD:3760
GO:GO:0005739 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0629 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OrthoDB:EOG4KSPM4 EMBL:M94557 EMBL:AF043635
EMBL:AF043630 EMBL:AF043631 EMBL:AF043632 EMBL:AF043633
EMBL:AF043634 IPI:IPI00196750 PIR:JN0569 RefSeq:NP_899157.1
UniGene:Rn.106922 ProteinModelPortal:P28042 SMR:P28042
IntAct:P28042 STRING:P28042 PRIDE:P28042 GeneID:54304
KEGG:rno:54304 UCSC:RGD:3760 InParanoid:P28042 NextBio:610960
ArrayExpress:P28042 Genevestigator:P28042
GermOnline:ENSRNOG00000012100 Uniprot:P28042
Length = 151
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDNEAYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
WHR+SV+ L V +++ G+ I+VEG ++ + D VRR I N +L
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMDKNN--VRRQATTIIADNIIFL 140
>MGI|MGI:1920040 [details] [associations]
symbol:Ssbp1 "single-stranded DNA binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
[GO:0051096 "positive regulation of helicase activity"
evidence=ISO] [GO:0070584 "mitochondrion morphogenesis"
evidence=IMP] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 MGI:MGI:1920040 GO:GO:0006260
GO:GO:0003682 GO:GO:0042645 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0070584 GO:GO:0051096
eggNOG:COG0629 GeneTree:ENSGT00390000002796 PANTHER:PTHR10302
TIGRFAMs:TIGR00621 HOVERGEN:HBG001181 KO:K03111 CTD:6742
HOGENOM:HOG000106484 OMA:ITYGEIT EMBL:AK013425 IPI:IPI00111877
RefSeq:NP_082634.1 RefSeq:NP_997633.1 UniGene:Mm.276356
UniGene:Mm.393562 ProteinModelPortal:Q9CYR0 SMR:Q9CYR0
STRING:Q9CYR0 PhosphoSite:Q9CYR0 PaxDb:Q9CYR0 PRIDE:Q9CYR0
Ensembl:ENSMUST00000031971 GeneID:381760 KEGG:mmu:381760
UCSC:uc009bmr.1 InParanoid:Q9CYR0 NextBio:402511 Bgee:Q9CYR0
CleanEx:MM_SSBP1 Genevestigator:Q9CYR0
GermOnline:ENSMUSG00000029911 Uniprot:Q9CYR0
Length = 152
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + + + +
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMWRSGDSEVYQMG-DVSQKTT- 83
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ G+ I+VEG ++ + D
Sbjct: 84 -WHRISVFRPGLRDVAYQYVKKGARIFVEGKVDYGEYMD 121
>TIGR_CMR|NSE_0759 [details] [associations]
symbol:NSE_0759 "single-strand binding protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:YP_506634.1 ProteinModelPortal:Q2GD12
SMR:Q2GD12 STRING:Q2GD12 GeneID:3931638 KEGG:nse:NSE_0759
PATRIC:22681523 OMA:TAEIVEN ProtClustDB:CLSK2528123
BioCyc:NSEN222891:GHFU-770-MONOMER Uniprot:Q2GD12
Length = 151
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWHR 140
I K ILVG +G+ P + + + + V FSL T TE WH+
Sbjct: 2 INKVILVGNLGKDPEVRTMSNAKQVATFSLATTENWNDKNTGERVSKTE--------WHQ 53
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAI 189
V V+ E L V+ ++ G+ +Y+EG+L+ + + D G+ R E+ +
Sbjct: 54 VVVFNEPLIKVISNYVNKGTRLYIEGSLQTRKWTDN-NGIERYTTEVVL 101
>TIGR_CMR|CBU_0271 [details] [associations]
symbol:CBU_0271 "single-strand binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
RefSeq:NP_819315.1 PDB:3TQY PDBsum:3TQY ProteinModelPortal:Q83EP4
SMR:Q83EP4 PRIDE:Q83EP4 GeneID:1208152 KEGG:cbu:CBU_0271
PATRIC:17929233 HOGENOM:HOG000106483 OMA:KWQTKEG
ProtClustDB:CLSK913941 BioCyc:CBUR227377:GJ7S-275-MONOMER
Uniprot:Q83EP4
Length = 158
Score = 114 (45.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/108 (30%), Positives = 50/108 (46%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K IL+G +GQ P + +G V +L T TE WH
Sbjct: 4 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
R++ + RL +V ++L GS IY+EG+L + + D G+ R EI
Sbjct: 56 RIAFF-NRLAEIVGEYLRKGSKIYIEGSLRTRKWQDK-NGVDRYTTEI 101
>UNIPROTKB|Q9KUW2 [details] [associations]
symbol:ssb "Single-stranded DNA-binding protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/115 (29%), Positives = 55/115 (47%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V ++ T TE WH
Sbjct: 5 GVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NG 193
RV++Y +L V ++L GS +Y+EG L+ + + D +G R E+ ++ NG
Sbjct: 57 RVTLYG-KLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVQGYNG 109
>TIGR_CMR|VC_0397 [details] [associations]
symbol:VC_0397 "single-strand binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/115 (29%), Positives = 55/115 (47%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V ++ T TE WH
Sbjct: 5 GVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NG 193
RV++Y +L V ++L GS +Y+EG L+ + + D +G R E+ ++ NG
Sbjct: 57 RVTLYG-KLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVQGYNG 109
>UNIPROTKB|P0AGE0 [details] [associations]
symbol:ssb "ssDNA-binding protein" species:83333
"Escherichia coli K-12" [GO:0000725 "recombinational repair"
evidence=TAS] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA;IDA] [GO:0009432 "SOS
response" evidence=TAS] UniProt:P0AGE0 InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006260 GO:GO:0006298 EMBL:U00006
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0009432 GO:GO:0000725 PDB:3SXU PDBsum:3SXU eggNOG:COG0629
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
EMBL:J01704 PIR:B65214 RefSeq:NP_418483.1 RefSeq:YP_492202.1
PDB:1EQQ PDB:1EYG PDB:1KAW PDB:1QVC PDB:1SRU PDB:3UF7 PDBsum:1EQQ
PDBsum:1EYG PDBsum:1KAW PDBsum:1QVC PDBsum:1SRU PDBsum:3UF7
ProteinModelPortal:P0AGE0 SMR:P0AGE0 DIP:DIP-35980N IntAct:P0AGE0
SWISS-2DPAGE:P0AGE0 PRIDE:P0AGE0 EnsemblBacteria:EBESCT00000004930
EnsemblBacteria:EBESCT00000004931 EnsemblBacteria:EBESCT00000004932
EnsemblBacteria:EBESCT00000018161 GeneID:12933677 GeneID:948570
KEGG:ecj:Y75_p3946 KEGG:eco:b4059 PATRIC:32123663 EchoBASE:EB0969
EcoGene:EG10976 OMA:SRPQQQS ProtClustDB:PRK09010
BioCyc:EcoCyc:EG10976-MONOMER BioCyc:ECOL316407:JW4020-MONOMER
EvolutionaryTrace:P0AGE0 Genevestigator:P0AGE0
Length = 178
Score = 117 (46.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/115 (29%), Positives = 52/115 (45%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGT 194
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + GT
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGT 109
>TIGR_CMR|ECH_0815 [details] [associations]
symbol:ECH_0815 "single-strand binding protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:YP_507611.1 ProteinModelPortal:Q2GG22
SMR:Q2GG22 STRING:Q2GG22 GeneID:3926994 KEGG:ech:ECH_0815
PATRIC:20577056 OMA:CARKGSK ProtClustDB:CLSK749103
BioCyc:ECHA205920:GJNR-818-MONOMER Uniprot:Q2GG22
Length = 157
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K IL+G +G+ P + +++G+ + FS+ T TE WH
Sbjct: 5 GVNKVILIGNLGKDPDIRVMQNGKEMASFSIATSESWVDKASGMRTEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V V+ E L ++ + GS IY+EG+L + + D
Sbjct: 57 NVVVFNEGLVKIIKNCIRKGSKIYIEGSLRTRKWTD 92
>GENEDB_PFALCIPARUM|PFE0435c [details] [associations]
symbol:PFE0435c "single-strand binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PROSITE:PS50935 GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844504
GO:GO:0020011 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HSSP:Q04837 RefSeq:XP_001351646.1 PDB:3ULP PDBsum:3ULP
ProteinModelPortal:Q8I415 PRIDE:Q8I415
EnsemblProtists:PFE0435c:mRNA GeneID:812855 KEGG:pfa:PFE0435c
EuPathDB:PlasmoDB:PF3D7_0508800 HOGENOM:HOG000284108
ProtClustDB:CLSZ2433225 Uniprot:Q8I415
Length = 284
Score = 119 (46.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWHRVS 142
K +L+G+VG P K L G V FSL T T+ WHR+
Sbjct: 84 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTD--------WHRIV 135
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLE-QKVFNDPITGLVRRIREIAIRRNGTYLIF 198
VY + + ++ K+L G +YV+G+L +K + + ++I EI + N LIF
Sbjct: 136 VYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIF 192
>UNIPROTKB|Q8I415 [details] [associations]
symbol:PFE0435c "Single-strand binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PROSITE:PS50935 GO:GO:0006260 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844504 GO:GO:0020011
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HSSP:Q04837
RefSeq:XP_001351646.1 PDB:3ULP PDBsum:3ULP
ProteinModelPortal:Q8I415 PRIDE:Q8I415
EnsemblProtists:PFE0435c:mRNA GeneID:812855 KEGG:pfa:PFE0435c
EuPathDB:PlasmoDB:PF3D7_0508800 HOGENOM:HOG000284108
ProtClustDB:CLSZ2433225 Uniprot:Q8I415
Length = 284
Score = 119 (46.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWHRVS 142
K +L+G+VG P K L G V FSL T T+ WHR+
Sbjct: 84 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTD--------WHRIV 135
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLE-QKVFNDPITGLVRRIREIAIRRNGTYLIF 198
VY + + ++ K+L G +YV+G+L +K + + ++I EI + N LIF
Sbjct: 136 VYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIF 192
>TIGR_CMR|APH_0465 [details] [associations]
symbol:APH_0465 "single-strand binding protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 OMA:CARKGSK RefSeq:YP_505066.1
ProteinModelPortal:Q2GKN5 SMR:Q2GKN5 STRING:Q2GKN5 GeneID:3931215
KEGG:aph:APH_0465 PATRIC:20949566 ProtClustDB:CLSK747308
BioCyc:APHA212042:GHPM-492-MONOMER Uniprot:Q2GKN5
Length = 159
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K IL+G +G+ P + +++G+ + FSL T TE WH
Sbjct: 5 GVNKVILIGYLGKDPDVRVMQNGKEMANFSLATSESWLDKASGSRTEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
+ V+ E L VV GS +Y+EG+L + + D
Sbjct: 57 NIVVFSEGLVKVVKTCARKGSKVYLEGSLRTRKWVD 92
>TIGR_CMR|SPO_1637 [details] [associations]
symbol:SPO_1637 "single-strand binding protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
OMA:IATSENW RefSeq:YP_166878.1 ProteinModelPortal:Q5LSX7 SMR:Q5LSX7
GeneID:3193067 KEGG:sil:SPO1637 PATRIC:23376599
ProtClustDB:CLSK751564 Uniprot:Q5LSX7
Length = 180
Score = 103 (41.3 bits), Expect = 0.00051, P = 0.00051
Identities = 31/115 (26%), Positives = 52/115 (45%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWHRVS 142
K ILVG +G+ P + ++G V + T TE WH V+
Sbjct: 7 KVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTE--------WHSVA 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197
++ E L V ++L GS +Y+EG L+ + + D +G R E+ ++ G L+
Sbjct: 59 IFSEGLVRVAEQYLRKGSKVYLEGQLQTRKWQDQ-SGQDRYSTEVVLQGFGATLV 112
>TIGR_CMR|SO_4028 [details] [associations]
symbol:SO_4028 "single-strand binding protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PROSITE:PS50935 GO:GO:0006260
GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106483 RefSeq:NP_719558.1 ProteinModelPortal:Q8EA81
SMR:Q8EA81 GeneID:1171655 KEGG:son:SO_4028 PATRIC:23527722
OMA:NQRPPAQ ProtClustDB:CLSK907458 Uniprot:Q8EA81
Length = 238
Score = 106 (42.4 bits), Expect = 0.00052, P = 0.00052
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIXXXXXXXXXXXXTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V ++ T + R +WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGNAVANITVATS-------ESWKDQQGQQQER--TEWH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGT 194
RV ++ +L + ++L GS +Y+EG L+ + + D +G R E+ I ++G+
Sbjct: 56 RVVLFG-KLAEITGEYLRKGSQVYLEGKLQTRKWKDQ-SGQDRYSTEVVIDQSGS 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 199 187 0.00085 110 3 11 22 0.45 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 593 (63 KB)
Total size of DFA: 147 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.70u 0.16s 18.86t Elapsed: 00:00:01
Total cpu time: 18.70u 0.16s 18.86t Elapsed: 00:00:01
Start: Fri May 10 05:31:55 2013 End: Fri May 10 05:31:56 2013