BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029088
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis
thaliana GN=At4g11060 PE=2 SV=1
Length = 201
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 82/126 (65%), Gaps = 13/126 (10%)
Query: 75 NGLDP-------GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENP 127
+G+DP G+ +AI+ G+VGQ+P+QK L++GRTVT+F++GTGG+ + R P
Sbjct: 58 HGVDPRKGWGFRGVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQP 117
Query: 128 TEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
QWHR++V+ E LG ++ L S++YVEG++E +V+ND I+ V+ I EI
Sbjct: 118 K------PAQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEI 171
Query: 188 AIRRNG 193
+RR+G
Sbjct: 172 CVRRDG 177
>sp|Q89A53|SSB_BUCBP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ssb PE=3 SV=1
Length = 166
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K IL+G +GQ P + +++G VT +L T ++ E + TE WH
Sbjct: 5 GINKVILIGYLGQDPDVRYMQNGSAVTNITLATSETWKDKNNGEIKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGT 194
R+ V+ +L + ++L GS +Y+EG+L+ + + D G+ R I EI + GT
Sbjct: 57 RI-VFFNKLAEIAGEYLKKGSQVYIEGSLQTRKWKDQ-NGIERYITEIIVSVGGT 109
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K IL+G +GQ P + + +G +T SL T ++ E++ TE WH
Sbjct: 5 GINKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGT 194
RV ++ +L V ++L GS +Y+EGNL+ + + D G R I EI + NG
Sbjct: 57 RVILFG-KLAEVAGEYLKKGSQVYIEGNLQTRKWQDQ-NGQDRYITEIVVGINGC 109
>sp|Q1RK72|SSB_RICBR Single-stranded DNA-binding protein OS=Rickettsia bellii (strain
RML369-C) GN=ssb PE=3 SV=1
Length = 150
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K L+G +G+ P + G+ + SL T I +R E + TE WHRV
Sbjct: 7 KVTLIGNLGRDPEIRTTGEGKEIANLSLATTDIWKDRVTGEKKEKTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIFF 199
++ E L VV ++ GS +Y+EG+L+ + +ND +G+ + EI ++ + LI
Sbjct: 59 IFNEGLVSVVKNYVKKGSKLYIEGSLQTRKWNDS-SGVEKYTTEIVLQNFNSQLILL 114
>sp|Q92G30|SSB_RICCN Single-stranded DNA-binding protein OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=ssb PE=3 SV=1
Length = 152
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEMRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIFF 199
++ E L VV +++ GS +Y+EG+L+ + +ND +G + E+ ++ + LI
Sbjct: 59 IFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|Q4UJW3|SSB_RICFE Single-stranded DNA-binding protein OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=ssb PE=3 SV=1
Length = 152
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIFF 199
++ E L VV +++ GS +Y+EG+L+ + +ND +G + E+ ++ + LI
Sbjct: 59 IFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|Q68Y11|SSB_RICTY Single-stranded DNA-binding protein OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ssb PE=3 SV=1
Length = 152
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIFF 199
++ E L +V +++ GS +Y+EG+L+ + +ND +G + E+ ++ + LI
Sbjct: 59 IFSEGLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|Q9ZCC2|SSB_RICPR Single-stranded DNA-binding protein OS=Rickettsia prowazekii
(strain Madrid E) GN=ssb PE=3 SV=1
Length = 152
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVS 142
K IL+G VG+ P + G+ + SL T +R E + TE WHRV
Sbjct: 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTE--------WHRVV 58
Query: 143 VYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIFF 199
++ E L +V +++ GS +Y+EG+L+ + +ND +G + E+ ++ + LI
Sbjct: 59 IFSEGLVSIVERYVTKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114
>sp|P57610|SSB_BUCAI Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ssb PE=3 SV=1
Length = 171
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V +L T ++ EN+ TE WH
Sbjct: 5 GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
R+ ++ +L + ++L GS +Y+EG+L+ + + D GL R EI + GT +
Sbjct: 57 RIVLFG-KLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEIIVNIGGTMQML 113
>sp|Q8P778|SSB_XANCP Single-stranded DNA-binding protein OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ssb PE=3 SV=1
Length = 172
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K ++G +T SL T +R +R E N+ +WH
Sbjct: 4 GINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDR---------EGNNQERTEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNL 168
RV V+ +LG + ++L GS +YVEG L
Sbjct: 55 RV-VFFGKLGEIAGEYLRKGSQVYVEGEL 82
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V SL T +++ + + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV +Y +L + ++L GS +Y+EG L + + D +G+ + E+ + ++GT +
Sbjct: 57 RVVLY-GKLAEIASEYLRKGSQVYIEGALRTRKWTDQ-SGVEKYTTEVVVSQSGTMQML 113
>sp|Q8K933|SSB_BUCAP Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ssb PE=3 SV=1
Length = 162
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V +L T ++ EN+ TE WH
Sbjct: 5 GVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
R+ ++ +L + ++L GS +Y+EG+L+ + + D GL R E+ + GT +
Sbjct: 57 RIVLFG-KLAEIAGEYLRKGSQVYIEGSLQTRKWQDQ-NGLERYTTEVIVNIGGTMQML 113
>sp|Q8PIJ2|SSB_XANAC Single-stranded DNA-binding protein OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=ssb PE=3 SV=1
Length = 180
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K ++G +T SL T +R +R + N+ +WH
Sbjct: 4 GINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDR---------DGNNQERTEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNL 168
RV V+ +LG + ++L GS +YVEG L
Sbjct: 55 RV-VFFGKLGEIAGEYLRKGSQVYVEGEL 82
>sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Brucella abortus biovar 1
(strain 9-941) GN=ssb PE=3 SV=1
Length = 168
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ E L V ++L G+ +Y+EG L+ + + D G R +EI +++
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQK 106
>sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Brucella abortus (strain
2308) GN=ssb PE=3 SV=1
Length = 168
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ E L V ++L G+ +Y+EG L+ + + D G R +EI +++
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQDQ-NGNDRYSKEIVLQK 106
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RVS++ ++ + ++L GS +Y+EG L+ + + G+ R EI + GT +
Sbjct: 56 RVSMFG-KVAEIAGEYLRKGSQVYIEGKLQTREWEK--DGIKRYTTEIVVDMQGTMQLL 111
>sp|Q9ZAQ8|SSB_RHOS4 Single-stranded DNA-binding protein OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=ssb
PE=3 SV=2
Length = 173
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K I++G +G+ P + ++G V + T +R E + TE WH
Sbjct: 5 VNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V+++ E L V ++L GST+Y+EG LE + + D +G R E+ +R
Sbjct: 57 VAIFDENLARVAEQYLRKGSTVYIEGQLETRKWQDQ-SGQDRYSTEVVLR 105
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTG-GIRNNRRPLENENPTEYANRCAVQW 138
G+ K +L+G +G P +++ SG++V F+L T G +++ L+ +W
Sbjct: 4 GLNKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQER----------TEW 53
Query: 139 HRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAI 189
HR+ + +L + ++L G +Y+EG L+ + ++D TG + EI
Sbjct: 54 HRIVAWG-KLADICSQYLKKGRQVYIEGRLQTRSWDDNKTGDKKYATEIVC 103
>sp|Q8G0J1|SSB_BRUSU Single-stranded DNA-binding protein OS=Brucella suis biovar 1
(strain 1330) GN=ssb PE=3 SV=1
Length = 168
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQD 91
>sp|Q9A894|SSB_CAUCR Single-stranded DNA-binding protein OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=ssb PE=3 SV=1
Length = 167
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P + L SG V + T +R E + TE WHR
Sbjct: 5 VNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDRSSGERKEKTE--------WHR 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ + L V ++L GST+Y+EG L+ + + D TG + EI +++
Sbjct: 57 VVIFNDNLVKVAEQYLRKGSTVYIEGALQTRKWTDN-TGQEKYSTEIVLQK 106
>sp|Q89L50|SSB_BRAJA Single-stranded DNA-binding protein OS=Bradyrhizobium japonicum
(strain USDA 110) GN=ssb PE=3 SV=1
Length = 164
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G+ P ++ + GR + S+ T ++ E + TE WHR
Sbjct: 5 VNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTE--------WHR 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNEGLCKVAEQYLKKGAKVYIEGALQTRKWTD 91
>sp|Q9PDI7|SSB2_XYLFA Single-stranded DNA-binding protein 2 OS=Xylella fastidiosa (strain
9a5c) GN=ssb2 PE=3 SV=1
Length = 164
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K + G T+T SL T +R ++ E +WH
Sbjct: 4 GINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQER---------TEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVF 173
RV + +LG + ++L GS Y+EG++ F
Sbjct: 55 RVKFFG-KLGEIAGEYLRKGSQCYIEGSIRYDKF 87
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L GS +Y+EG+L+ + + D +G R EI + GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGSQVYIEGSLQTRKWQDQ-SGQDRYTTEIVVNVGGTMQML 113
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L G+ +Y+EG L + ++D G+ R I EI ++ GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112
>sp|Q88QK5|SSB_PSEPK Single-stranded DNA-binding protein OS=Pseudomonas putida (strain
KT2440) GN=ssb PE=3 SV=1
Length = 181
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGT 194
RVS++ ++ + ++L GS Y+EG L+ + + G+ R EI + NGT
Sbjct: 56 RVSLFG-KVAEIAGEYLRKGSQCYIEGKLQTREWEKD--GIKRYTTEIIVDINGT 107
>sp|P77953|SSB_SHEHA Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb
PE=3 SV=1
Length = 226
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +G+ P + + +G V F++ T +++ E +WH
Sbjct: 5 GVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQPQER---------TEWH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
+ +Y RL + ++L GS IY+EG L+ + D TG R EI
Sbjct: 56 NIVMY-RRLAEIAGEYLKKGSKIYIEGKLQTSKWQDQATGQDRYKTEI 102
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T +R+ E ++ TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTE--------WHS 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
V ++ E L V ++L G+ +Y+EG L+ + + D
Sbjct: 57 VVIFNENLAKVAEQYLKKGAKVYIEGALQTRKWQD 91
>sp|Q87DQ5|SSB_XYLFT Single-stranded DNA-binding protein OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=ssb PE=3 SV=1
Length = 164
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG +G P K + G T+T SL T +R ++ E +WH
Sbjct: 4 GINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQER---------TEWH 54
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVF 173
RV + +LG + ++L GS Y+EG++ F
Sbjct: 55 RVKFFG-KLGEIAGEYLRKGSQCYIEGSIRYDKF 87
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L G+ +Y+EG L + ++D G+ R I EI ++ GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWDD--NGITRYITEILVKTTGTMQML 112
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V ++ T ++ E + TE WH
Sbjct: 5 GVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
RV++Y +L V ++L GS +Y+EG L+ + + D +G R E+ ++
Sbjct: 57 RVTLY-GKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVQ 105
>sp|Q83EP4|SSB_COXBU Single-stranded DNA-binding protein OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=ssb PE=1 SV=1
Length = 158
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + +G V +L T +++ E + TE WH
Sbjct: 4 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREI 187
R++ + RL +V ++L GS IY+EG+L + + D G+ R EI
Sbjct: 56 RIAFF-NRLAEIVGEYLRKGSKIYIEGSLRTRKWQDK-NGVDRYTTEI 101
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T +++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L GS +Y+EG L+ + + D +G R E+ + GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGSQVYIEGALQTRKWQDQ-SGQERYTTEVVVNVGGTMQML 113
>sp|Q8UF87|SSB_AGRT5 Single-stranded DNA-binding protein OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=ssb PE=3 SV=2
Length = 173
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K IL+G VG P ++ + GR + + T +R E + TE WH
Sbjct: 5 VNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTE--------WHT 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V V+ E L VV +++ G+ +Y+EG L+ + + D TG R EI ++
Sbjct: 57 VVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEIVLQ 105
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + SG V +L T +++ E + TE WH
Sbjct: 5 GVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L + ++L GS +Y+EG L+ + + D +G R E+ + GT +
Sbjct: 57 RVVIFG-KLAEIAGEYLRKGSQVYIEGQLQTRKWQDQ-SGQDRYSTEVVVNIGGTMQML 113
>sp|P09381|SSBPB_XENLA Single-stranded DNA-binding protein 1-B, mitochondrial OS=Xenopus
laevis GN=ssbp1-b PE=1 SV=4
Length = 148
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENE--NPTEYANRC 134
L+ + K L+G+VGQ PV ++ VT+FSL T + R ENE P N+
Sbjct: 26 LERSMNKVQLLGRVGQDPVMRQADGKNPVTIFSLATNELW---RSGENEVFQPAGDVNQ- 81
Query: 135 AVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHRVSV+ L V +H+ G+ + VEG ++ + D
Sbjct: 82 KTTWHRVSVFRPGLRDVAYQHVKKGARLLVEGKIDYGEYTD 122
>sp|Q95KK4|SSBP_RABIT Single-stranded DNA-binding protein, mitochondrial OS=Oryctolagus
cuniculus GN=SSBP1 PE=2 SV=1
Length = 148
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ VT+FSL T + R +NE
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPVTIFSLATNEMW---RSGDNETYQMGDVSQKT 82
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ GS IYVEG ++ + D
Sbjct: 83 TWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYMD 121
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G+ P + + +G V + T +++ E TE WH
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L G+ +Y+EG L + + D G+ R + EI ++ GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112
>sp|Q8L2A6|SSB_PROVU Single-stranded DNA-binding protein OS=Proteus vulgaris GN=ssb PE=3
SV=1
Length = 195
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG VGQ P + + +G V +L T +++ E++ TE WH
Sbjct: 5 GVNKVILVGNVGQDPEVRYMPNGGAVANLTLATSETWRDKQTGESKEKTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L + + + GS IY+EG L+ + + D G+ + E+ + GT +
Sbjct: 57 RVVLFG-KLAEITGEFVKKGSQIYIEGALQTRKWTDQ-AGVEKYTTEVVVNVGGTMQML 113
>sp|Q8A7M7|SSB_BACTN Single-stranded DNA-binding protein OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=ssb PE=3 SV=1
Length = 161
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K IL+G VGQ P K +G V F L T R N T+ R +WH
Sbjct: 3 VNKVILIGNVGQDPRVKYFDTGSAVATFPLAT-----TDRGYTLANGTQIPERT--EWHN 55
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAI 189
+ V RL +V K++ G +Y+EG + + ++D +G +R I EI +
Sbjct: 56 I-VASNRLAEIVDKYVHKGDKLYLEGKIRTRSYSDQ-SGAMRYITEIFV 102
>sp|Q32PB0|SSBP_BOVIN Single-stranded DNA-binding protein, mitochondrial OS=Bos taurus
GN=SSBP1 PE=2 SV=1
Length = 148
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAV 136
L+ + + L+G+VGQ PV ++++ T+FSL T + R ENE
Sbjct: 26 LERSLNRVQLLGRVGQDPVMRQVEGKNPDTIFSLATNEMW---RSGENETYQMGDVSQKT 82
Query: 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND 175
WHR+SV+ L V +++ GS IYVEG ++ + D
Sbjct: 83 TWHRISVFRPGLRDVAYQYVKKGSRIYVEGKVDYGEYTD 121
>sp|P56898|SSB_RHIME Single-stranded DNA-binding protein OS=Rhizobium meliloti (strain
1021) GN=ssb PE=3 SV=1
Length = 174
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K IL+G VG P ++ + GR + + T +R E TE WH
Sbjct: 5 VNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTE--------WHT 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190
V V+ E L VV +++ G+ +Y+EG L+ + + D TG R E+ ++
Sbjct: 57 VVVFNEGLCKVVEQYVKKGAKLYIEGQLQTRKWQDQ-TGNDRYSTEVVLQ 105
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG VG P + + +G VT +L T +++ + + TE WH
Sbjct: 4 GVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV V+ RL + ++L GS +YVEG+L + + G R EI + NG +
Sbjct: 56 RV-VFFGRLAEIAGEYLRKGSQVYVEGSLRTRKWQGQ-DGQDRYTTEIVVDINGNMQLL 112
>sp|Q8VMM4|SSBW_PSEPU Single-stranded DNA-binding protein OS=Pseudomonas putida GN=ssb
PE=3 SV=1
Length = 180
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG GQ P + L +G VT SL T +++ + TE WH
Sbjct: 4 GVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTE--------WH 55
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RVS++ ++ + ++L GS Y+EG L+ + + G+ R EI + GT +
Sbjct: 56 RVSLFG-KVAEIAGEYLRKGSQCYIEGKLQTREWEKD--GIKRYTTEIIVDMQGTMQLL 111
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K IL+G +GQ P + + +G V S+ T +++ + + TE WH
Sbjct: 5 GVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
+V ++ +L + ++L GS +Y+EG L+ + + D G+ R EI + + GT +
Sbjct: 57 KVVLFG-KLAEIASEYLRKGSQVYIEGKLKTRKWTDD-AGVERYTTEIIVSQGGTMQMI 113
>sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb PE=3 SV=2
Length = 176
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + SG V +L T +++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
RV ++ +L V ++L GS +Y+EG L + + D +G R EI + + G +
Sbjct: 57 RVVMFG-KLAEVAGEYLRKGSQVYIEGQLRTRKWTDQ-SGQERYTTEINVPQIGGVM 111
>sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein OS=Salmonella typhi GN=ssb PE=3
SV=2
Length = 176
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + SG V +L T +++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196
RV ++ +L V ++L GS +Y+EG L + + D +G R EI + + G +
Sbjct: 57 RVVMFG-KLAEVAGEYLRKGSQVYIEGQLRTRKWTDQ-SGQERYTTEINVPQIGGVM 111
>sp|Q98M41|SSB_RHILO Single-stranded DNA-binding protein OS=Rhizobium loti (strain
MAFF303099) GN=ssb PE=3 SV=1
Length = 172
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHR 140
+ K ILVG +G P ++L SG V + T ++ E + TE WH
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGEPVVNIRIATSESWRDKNSGERKEKTE--------WHN 56
Query: 141 VSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191
V ++ E + V ++L G +YVEG L+ + + D TG + E+ ++R
Sbjct: 57 VVIFNEGIAKVAEQYLKKGMKVYVEGQLQTRKWQDQ-TGADKYTTEVVLQR 106
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
GI K ILVG++G+ P + + +G V + T +++ + TE WH
Sbjct: 5 GINKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGKMREQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L G+ +Y+EG L + + D G+ R + EI ++ GT +
Sbjct: 57 RVVLFG-KLAEVAGEYLRKGAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + GT +
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH 139
G+ K ILVG +GQ P + + +G V +L T ++ E + TE WH
Sbjct: 5 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTE--------WH 56
Query: 140 RVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198
RV ++ +L V ++L GS +Y+EG L + + D +G R E+ + GT +
Sbjct: 57 RVVLFG-KLAEVASEYLRKGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,754,543
Number of Sequences: 539616
Number of extensions: 3519314
Number of successful extensions: 8652
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 8557
Number of HSP's gapped (non-prelim): 90
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)