Query 029088
Match_columns 199
No_of_seqs 125 out of 1228
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09010 single-stranded DNA-b 100.0 2.7E-30 6E-35 213.4 15.5 110 79-198 4-113 (177)
2 PRK06642 single-stranded DNA-b 100.0 9.1E-30 2E-34 205.7 15.9 113 77-198 1-114 (152)
3 PRK05733 single-stranded DNA-b 100.0 1.2E-29 2.7E-34 208.7 15.8 111 77-198 1-111 (172)
4 PRK06752 single-stranded DNA-b 100.0 2.8E-29 6E-34 192.8 15.0 103 80-198 1-103 (112)
5 PRK08763 single-stranded DNA-b 100.0 2.7E-29 5.9E-34 205.3 15.5 108 77-198 1-108 (164)
6 PRK07275 single-stranded DNA-b 100.0 3.4E-29 7.3E-34 204.4 15.4 103 80-198 1-103 (162)
7 PRK13732 single-stranded DNA-b 100.0 4.3E-29 9.3E-34 206.0 15.9 109 79-198 4-112 (175)
8 PRK06863 single-stranded DNA-b 100.0 7.4E-29 1.6E-33 203.4 15.2 108 78-198 1-108 (168)
9 PRK06341 single-stranded DNA-b 100.0 1.3E-28 2.8E-33 201.6 16.0 113 77-198 1-114 (166)
10 PRK07459 single-stranded DNA-b 100.0 1.1E-28 2.4E-33 192.5 14.8 99 81-198 3-101 (121)
11 PRK06958 single-stranded DNA-b 100.0 1.7E-28 3.6E-33 203.4 15.3 108 78-198 1-108 (182)
12 PRK08486 single-stranded DNA-b 100.0 1.9E-28 4.2E-33 203.3 15.4 105 80-198 1-105 (182)
13 PRK07274 single-stranded DNA-b 100.0 6.1E-28 1.3E-32 190.4 14.5 102 80-198 1-102 (131)
14 PRK06751 single-stranded DNA-b 100.0 8.6E-28 1.9E-32 198.0 14.9 103 80-198 1-103 (173)
15 PRK08182 single-stranded DNA-b 100.0 9.4E-28 2E-32 193.2 14.6 106 80-198 1-110 (148)
16 TIGR00621 ssb single stranded 100.0 3.7E-27 8E-32 192.3 15.3 107 78-198 1-107 (164)
17 PRK06293 single-stranded DNA-b 99.9 6.2E-27 1.3E-31 190.8 14.5 99 81-198 1-99 (161)
18 KOG1653 Single-stranded DNA-bi 99.9 2.7E-27 5.8E-32 191.4 9.2 120 69-198 45-164 (175)
19 PF00436 SSB: Single-strand bi 99.9 4E-26 8.6E-31 169.9 13.0 104 81-198 1-104 (104)
20 PRK07772 single-stranded DNA-b 99.9 8.1E-26 1.8E-30 188.1 15.2 112 78-198 1-113 (186)
21 COG0629 Ssb Single-stranded DN 99.9 3.7E-25 8E-30 180.7 12.9 108 80-198 2-111 (167)
22 PRK05853 hypothetical protein; 99.9 1.9E-24 4.1E-29 176.3 12.9 102 86-198 1-103 (161)
23 PRK05813 single-stranded DNA-b 99.9 2.1E-23 4.5E-28 177.6 14.8 97 79-198 107-207 (219)
24 PRK02801 primosomal replicatio 99.9 2.3E-22 5E-27 152.3 14.8 100 80-198 1-100 (101)
25 cd04496 SSB_OBF SSB_OBF: A sub 99.9 1.6E-21 3.5E-26 143.6 14.5 100 84-198 1-100 (100)
26 PRK05813 single-stranded DNA-b 99.8 2.8E-18 6.2E-23 146.2 14.0 93 81-198 8-100 (219)
27 PRK00036 primosomal replicatio 97.9 0.00015 3.2E-09 55.8 10.0 78 81-170 1-78 (107)
28 COG2965 PriB Primosomal replic 97.5 0.0013 2.7E-08 50.0 9.6 82 79-173 2-85 (103)
29 PF01336 tRNA_anti-codon: OB-f 96.4 0.042 9.2E-07 37.4 8.9 60 84-171 1-60 (75)
30 cd04474 RPA1_DBD_A RPA1_DBD_A: 95.7 0.083 1.8E-06 39.7 8.0 69 77-167 5-76 (104)
31 cd04484 polC_OBF polC_OBF: A s 95.7 0.11 2.3E-06 37.6 8.3 69 83-175 1-70 (82)
32 cd04489 ExoVII_LU_OBF ExoVII_L 95.6 0.43 9.3E-06 33.1 11.0 62 84-173 2-63 (78)
33 PF11506 DUF3217: Protein of u 94.2 1.7 3.8E-05 32.4 11.5 88 80-188 1-88 (104)
34 cd04492 YhaM_OBF_like YhaM_OBF 93.9 0.38 8.3E-06 33.2 7.1 54 93-170 8-61 (83)
35 cd04485 DnaE_OBF DnaE_OBF: A s 93.7 0.74 1.6E-05 31.3 8.3 61 86-170 2-62 (84)
36 cd03524 RPA2_OBF_family RPA2_O 92.8 1.3 2.9E-05 28.8 8.2 33 137-170 29-61 (75)
37 PRK07211 replication factor A; 91.7 0.79 1.7E-05 43.8 7.9 71 76-169 58-133 (485)
38 PF11325 DUF3127: Domain of un 91.0 3 6.6E-05 30.7 8.8 77 86-189 2-80 (84)
39 cd04487 RecJ_OBF2_like RecJ_OB 90.2 1.1 2.5E-05 31.7 5.9 58 84-170 1-58 (73)
40 PRK15491 replication factor A; 89.4 4.2 9.1E-05 37.5 10.4 74 79-174 174-250 (374)
41 PRK15491 replication factor A; 86.8 7.2 0.00016 36.0 10.2 72 75-167 61-135 (374)
42 PRK06461 single-stranded DNA-b 86.6 13 0.00029 28.9 10.8 66 77-169 10-79 (129)
43 cd04488 RecG_wedge_OBF RecG_we 85.9 5.7 0.00012 26.3 7.0 32 138-171 30-61 (75)
44 PRK07211 replication factor A; 85.7 9.4 0.0002 36.6 10.6 76 71-169 162-240 (485)
45 PRK00286 xseA exodeoxyribonucl 84.7 11 0.00024 35.0 10.4 83 81-195 23-106 (438)
46 PF13742 tRNA_anti_2: OB-fold 83.1 2 4.4E-05 32.0 4.0 64 80-171 20-84 (99)
47 cd04490 PolII_SU_OBF PolII_SU_ 82.5 15 0.00033 26.2 10.5 31 138-168 29-60 (79)
48 cd04482 RPA2_OBF_like RPA2_OBF 81.9 2 4.3E-05 31.6 3.5 34 138-172 29-64 (91)
49 PRK13480 3'-5' exoribonuclease 80.9 6.3 0.00014 35.6 7.1 57 90-170 19-75 (314)
50 TIGR00237 xseA exodeoxyribonuc 80.0 6.7 0.00015 36.7 7.2 83 81-195 17-100 (432)
51 TIGR00617 rpa1 replication fac 79.9 22 0.00048 34.9 10.9 96 72-196 182-283 (608)
52 PRK07373 DNA polymerase III su 78.2 12 0.00027 35.3 8.4 64 83-170 282-345 (449)
53 COG3390 Uncharacterized protei 78.0 18 0.00039 30.7 8.3 77 79-182 43-119 (196)
54 PRK14699 replication factor A; 77.6 13 0.00029 35.5 8.5 76 76-174 62-140 (484)
55 TIGR01405 polC_Gram_pos DNA po 76.6 14 0.00031 39.2 9.0 73 80-175 6-79 (1213)
56 PRK00448 polC DNA polymerase I 73.7 17 0.00036 39.4 8.7 74 79-175 234-308 (1437)
57 PRK08402 replication factor A; 72.7 30 0.00065 31.8 9.2 71 77-168 68-140 (355)
58 PRK05673 dnaE DNA polymerase I 72.3 18 0.00039 38.2 8.5 65 82-170 978-1042(1135)
59 PRK12366 replication factor A; 70.6 40 0.00086 33.3 10.1 79 71-175 280-363 (637)
60 PRK12366 replication factor A; 69.6 20 0.00043 35.4 7.7 67 77-167 69-139 (637)
61 cd04491 SoSSB_OBF SoSSB_OBF: A 66.9 41 0.00088 23.5 9.8 46 138-197 35-81 (82)
62 PF02765 POT1: Telomeric singl 65.4 65 0.0014 25.3 9.9 80 81-176 12-93 (146)
63 PRK14699 replication factor A; 64.8 50 0.0011 31.6 9.2 75 77-173 172-249 (484)
64 PLN02903 aminoacyl-tRNA ligase 64.4 1E+02 0.0022 30.8 11.5 33 139-171 102-136 (652)
65 COG1570 XseA Exonuclease VII, 63.2 27 0.00059 33.2 6.9 64 81-172 23-86 (440)
66 PF13567 DUF4131: Domain of un 62.3 44 0.00096 25.2 7.1 69 82-171 76-144 (176)
67 KOG3416 Predicted nucleic acid 62.2 37 0.00081 27.1 6.5 59 81-166 14-72 (134)
68 COG1200 RecG RecG-like helicas 61.5 1.1E+02 0.0024 30.7 11.0 78 82-190 61-138 (677)
69 PRK06920 dnaE DNA polymerase I 60.0 45 0.00098 35.2 8.5 65 83-171 945-1009(1107)
70 PRK06826 dnaE DNA polymerase I 59.7 46 0.001 35.3 8.5 65 83-171 993-1057(1151)
71 PRK07374 dnaE DNA polymerase I 59.4 44 0.00096 35.5 8.4 65 82-170 1001-1065(1170)
72 PF03983 SHD1: SLA1 homology d 52.0 29 0.00062 24.8 4.0 29 169-198 11-39 (70)
73 PF12869 tRNA_anti-like: tRNA_ 50.8 82 0.0018 24.1 6.9 35 138-172 99-133 (144)
74 PRK07279 dnaE DNA polymerase I 48.2 81 0.0017 33.2 8.1 66 82-171 885-951 (1034)
75 PRK10917 ATP-dependent DNA hel 48.1 91 0.002 30.9 8.2 63 82-170 60-122 (681)
76 cd04481 RPA1_DBD_B_like RPA1_D 47.6 33 0.00072 25.3 4.0 37 138-175 36-76 (106)
77 cd04321 ScAspRS_mt_like_N ScAs 46.9 1E+02 0.0022 21.8 6.7 41 152-198 44-84 (86)
78 cd04320 AspRS_cyto_N AspRS_cyt 43.3 52 0.0011 24.0 4.5 41 153-198 49-89 (102)
79 cd04498 hPOT1_OB2 hPOT1_OB2: A 42.9 41 0.00088 26.5 4.0 27 137-165 60-86 (123)
80 TIGR00643 recG ATP-dependent D 42.5 2.1E+02 0.0045 28.0 9.6 63 82-170 33-95 (630)
81 PF08021 FAD_binding_9: Sidero 40.3 45 0.00098 25.4 3.8 32 135-166 80-112 (117)
82 cd04497 hPOT1_OB1_like hPOT1_O 40.0 1.8E+02 0.0038 22.6 8.6 74 82-176 15-88 (138)
83 PF12342 DUF3640: Protein of u 39.3 19 0.00041 20.9 1.1 16 1-16 1-16 (26)
84 PRK10646 ADP-binding protein; 38.8 20 0.00044 29.1 1.7 23 147-169 16-38 (153)
85 cd04475 RPA1_DBD_B RPA1_DBD_B: 38.2 1.5E+02 0.0033 21.3 8.9 33 138-174 40-72 (101)
86 COG0802 Predicted ATPase or ki 37.8 25 0.00054 28.6 2.1 23 147-169 13-35 (149)
87 PRK05672 dnaE2 error-prone DNA 36.7 1.4E+02 0.003 31.5 7.7 32 138-170 985-1016(1046)
88 cd04323 AsnRS_cyto_like_N AsnR 36.5 1.1E+02 0.0024 21.4 5.2 52 139-198 29-82 (84)
89 cd04100 Asp_Lys_Asn_RS_N Asp_L 36.2 75 0.0016 22.2 4.2 40 152-198 44-83 (85)
90 PF02367 UPF0079: Uncharacteri 36.2 15 0.00032 28.7 0.5 22 147-168 3-24 (123)
91 PRK07218 replication factor A; 34.9 4E+02 0.0086 25.2 10.1 66 77-170 168-235 (423)
92 PF00970 FAD_binding_6: Oxidor 34.1 98 0.0021 21.8 4.6 33 136-170 62-96 (99)
93 cd04316 ND_PkAspRS_like_N ND_P 33.4 1.2E+02 0.0025 22.4 5.1 35 138-172 41-78 (108)
94 cd04318 EcAsnRS_like_N EcAsnRS 33.1 1.7E+02 0.0036 20.3 6.1 32 152-190 44-75 (82)
95 cd04317 EcAspRS_like_N EcAspRS 32.9 1.6E+02 0.0034 22.5 5.9 33 139-172 44-78 (135)
96 PF11948 DUF3465: Protein of u 32.2 86 0.0019 25.0 4.3 34 144-182 75-108 (131)
97 COG1862 YajC Preprotein transl 31.9 1.1E+02 0.0025 23.0 4.7 22 150-171 38-59 (97)
98 cd04319 PhAsnRS_like_N PhAsnRS 31.0 1.4E+02 0.003 21.8 5.1 30 154-190 46-75 (103)
99 cd04483 hOBFC1_like hOBFC1_lik 29.5 72 0.0016 23.3 3.3 20 152-171 59-78 (92)
100 COG2176 PolC DNA polymerase II 29.2 1.9E+02 0.0042 31.3 7.2 74 79-175 237-311 (1444)
101 cd04322 LysRS_N LysRS_N: N-ter 29.0 1.7E+02 0.0038 21.4 5.4 18 154-171 48-65 (108)
102 TIGR00150 HI0065_YjeE ATPase, 26.9 46 0.001 26.2 2.0 23 147-169 10-32 (133)
103 COG0587 DnaE DNA polymerase II 26.9 2.5E+02 0.0055 30.0 7.7 67 83-172 978-1044(1139)
104 cd04478 RPA2_DBD_D RPA2_DBD_D: 26.6 76 0.0016 22.5 2.9 32 139-171 29-63 (95)
105 cd03452 MaoC_C MaoC_C The C-t 26.3 3E+02 0.0065 21.1 7.2 40 156-196 89-129 (142)
106 smart00350 MCM minichromosome 25.9 2.1E+02 0.0045 27.3 6.5 34 135-173 102-135 (509)
107 TIGR01077 L13_A_E ribosomal pr 25.8 42 0.00091 27.0 1.5 23 143-166 9-31 (142)
108 PF05309 TraE: TraE protein; 24.2 2.9E+02 0.0063 22.5 6.4 39 158-197 138-177 (187)
109 PRK06394 rpl13p 50S ribosomal 23.6 47 0.001 26.8 1.4 24 143-167 13-36 (146)
110 PF06557 DUF1122: Protein of u 23.0 2.5E+02 0.0054 23.4 5.6 16 150-165 70-85 (170)
111 PF10574 UPF0552: Uncharacteri 22.5 2.3E+02 0.005 24.6 5.5 35 155-190 28-65 (224)
112 cd03446 MaoC_like MoaC_like 22.1 3.4E+02 0.0073 20.2 6.6 41 155-196 90-131 (140)
113 cd03454 YdeM YdeM is a Bacillu 20.5 3.7E+02 0.0081 20.1 7.0 42 155-196 88-130 (140)
114 KOG0479 DNA replication licens 20.1 1.2E+02 0.0026 30.5 3.6 37 152-190 223-261 (818)
No 1
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=213.45 Aligned_cols=110 Identities=30% Similarity=0.558 Sum_probs=101.8
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
++||+|+|+||||+||++|++++|..+++|+||+++.|+++.. + +| .+.++||+|++|+ ++|+.+.++|+|
T Consensus 4 r~~N~V~LiGrLg~DPelR~t~nG~~v~~fsVAvn~~~kd~~~---G---e~--~e~t~w~~V~~fg-k~Ae~~~~~L~K 74 (177)
T PRK09010 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQT---G---EM--KEQTEWHRVVLFG-KLAEVAGEYLRK 74 (177)
T ss_pred cCceEEEEEEEeCCCceEEEcCCCCEEEEEEEEEcCccccCcc---c---cc--ccceEEEEEEEeh-hHHHHHHHhcCC
Confidence 7899999999999999999999999999999999999986532 3 33 2379999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++.|+|+ +|++++.++|+|+.+|+|+||
T Consensus 75 Gs~V~VeGrL~~~~yedk-dG~~r~~~eVvv~~~~~~~~l 113 (177)
T PRK09010 75 GSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113 (177)
T ss_pred CCEEEEEEEEEeccccCC-CCCEEEEEEEEEecCCcEEEc
Confidence 999999999999999998 999999999999999999998
No 2
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=99.97 E-value=9.1e-30 Score=205.72 Aligned_cols=113 Identities=28% Similarity=0.558 Sum_probs=99.8
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|...||+|+|+||||+||+++++++|.++++|+||+++.|+++.. | +| ...|+||+|++||+++|+.+.+||
T Consensus 1 Ma~~~N~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~---G---~~--~~~T~w~~v~~~g~~~Ae~~~~~l 72 (152)
T PRK06642 1 MAGSLNKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRIT---S---ER--KERTEWHRVVIFSEGLVSVVERYV 72 (152)
T ss_pred CCCcceEEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccC---C---cc--ccceeEEEEEEeChHHHHHHHHhC
Confidence 334599999999999999999999999999999999999986532 2 33 237999999999844999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
+||++|+|+|+|+++.|+++ +|++++.++|+|++ ++.|+||
T Consensus 73 ~KG~~V~V~GrL~~~~y~dk-dG~~r~~~eVvv~~~~~~i~fl 114 (152)
T PRK06642 73 TKGSKLYIEGSLQTRKWNDN-SGQEKYTTEVVLQNFNSQLILL 114 (152)
T ss_pred CCCCEEEEEEEEEeCeeECC-CCCEEEEEEEEEEecccceEec
Confidence 99999999999999999998 99999999999997 4577887
No 3
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=208.73 Aligned_cols=111 Identities=31% Similarity=0.560 Sum_probs=101.5
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+++||+|+|+||||+||+++++++|..+++|+||+++.|+++.. | +|. +.++||+|++|| ++|+.+.++|
T Consensus 1 ma~~mNkV~LiGrlg~DPElr~t~nG~~va~fsVAv~~~~k~~~~---G---e~~--e~T~w~~Vv~fg-k~Ae~v~~~l 71 (172)
T PRK05733 1 MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQS---G---QKV--ERTEWHRVSLFG-KVAEIAGEYL 71 (172)
T ss_pred CCCcceEEEEEEEecCCCEEEECCCCCEEEEEEEEEcCccccCCC---C---ccc--ccceEEEEEEeh-HHHHHHHHHh
Confidence 567899999999999999999999999999999999998876532 2 342 369999999998 8999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|+ + +|++++.++|+|+.+|+|.||
T Consensus 72 ~KGs~V~VeGrLr~~~y~-k-dG~~r~~~eVvvd~~g~v~~L 111 (172)
T PRK05733 72 RKGSQVYIEGKLQTREWE-K-DGIKRYTTEIVVDMQGTMQLL 111 (172)
T ss_pred CCCCEEEEEEEEEeCcEe-c-CCEEEEEEEEEEeecCeEEEC
Confidence 999999999999999999 6 999999999999999999998
No 4
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=99.96 E-value=2.8e-29 Score=192.80 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=95.5
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
+||+|+|+|+||+|||++++++|.+++.|+||+++.|+++. | ++ .++||+|++|| ++|+.+.++|+||
T Consensus 1 MmN~v~liGrl~~dPelr~t~~G~~~~~f~lAv~~~~~~~~----g---~~----~t~~~~v~~wg-~~Ae~~~~~l~KG 68 (112)
T PRK06752 1 MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSL----G---EQ----QVDFINCVVWR-KSAENVTEYCTKG 68 (112)
T ss_pred CceEEEEEEECcCCCEEEECCCCCEEEEEEEEECCCeEcCC----C---CE----EEEEEEEEEeh-HHHHHHHHhcCCC
Confidence 48999999999999999999999999999999999987542 2 22 69999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.|+++ +|++++.++|+|+ +|.||
T Consensus 69 ~~V~V~G~l~~~~~~~~-~G~~~~~~ei~a~---~i~~l 103 (112)
T PRK06752 69 SLVGITGRIHTRNYEDD-QGKRIYITEVVIE---SITFL 103 (112)
T ss_pred CEEEEEEEEEeCccCCC-CCcEEEEEEEEEE---EEEEC
Confidence 99999999999999998 9999999999999 88887
No 5
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=2.7e-29 Score=205.31 Aligned_cols=108 Identities=33% Similarity=0.560 Sum_probs=98.9
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|.++||+|+|+||||+||+++++++|..+++|+||+++.|+++. | +| .+.++||+|++|| ++|+.+.++|
T Consensus 1 mar~~Nkv~LiGrLg~DPelr~t~~G~~va~fsVA~~~~~k~~~----G---~~--~e~t~w~~Vv~fg-k~Ae~v~~~L 70 (164)
T PRK08763 1 MARGINKVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDRE----G---NT--QERTEWHRVKFFG-KLGEIAGEYL 70 (164)
T ss_pred CCCcceEEEEEEEecCCCeEEEcCCCCeEEEEEEEeccceecCC----C---Ce--eccceEEEEEEeh-HHHHHHHHhc
Confidence 45689999999999999999999999999999999999988663 2 23 2379999999998 8999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|+++ +|++++.++|+|+ .|+||
T Consensus 71 ~KGs~V~VeGrL~~~~y~dk-dG~kr~~~eIva~---~i~~L 108 (164)
T PRK08763 71 RKGSQCYIEGSIRYDKFTGQ-DGQERYVTEIVAD---EMQML 108 (164)
T ss_pred CCCCEEEEEEEEEeceeECC-CCCEEEEEEEEEe---EEEEC
Confidence 99999999999999999998 9999999999999 88887
No 6
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=204.41 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=95.9
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
|||+|+|+|||++|||+|++++|..++.|+||+++.|++.. |+ + .++||+|++|| ++|+.+.++|+||
T Consensus 1 M~N~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~----ge---~----~tdfi~vv~wg-k~Ae~~~~~l~KG 68 (162)
T PRK07275 1 MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQN----GE---R----EADFINCVIWR-QQAENLANWAKKG 68 (162)
T ss_pred CeeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCC----CC---E----eeeEEEEEEEc-HHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999997542 32 2 69999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.|+++ +|++++.+||+|+ +|+||
T Consensus 69 ~~V~VeGrl~~r~y~dk-dG~k~~~~evva~---~i~~l 103 (162)
T PRK07275 69 ALIGVTGRIQTRNYENQ-QGQRVYVTEVVAD---NFQML 103 (162)
T ss_pred CEEEEEEEEEeceEECC-CCCEEEEEEEEEe---EEEEC
Confidence 99999999999999998 9999999999999 88887
No 7
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=206.02 Aligned_cols=109 Identities=29% Similarity=0.590 Sum_probs=100.1
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
++||+|+|+||||+|||++++++|..++.|+||+++.|+++.. | +|. +.++||+|++|| ++|+.+.++|+|
T Consensus 4 r~mN~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~---G---e~~--e~t~w~~Vv~wg-k~Ae~v~~~L~K 74 (175)
T PRK13732 4 RGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQT---G---EMR--EQTEWHRVVLFG-KLAEVAGEYLRK 74 (175)
T ss_pred cCceEEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCC---C---cee--cceeEEEEEEec-HHHHHHHHhcCC
Confidence 4799999999999999999999999999999999999876532 3 453 379999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++.|++ +|++++.+||+|+..|+|+||
T Consensus 75 G~~V~VeGrL~~r~ye~--dG~kr~~~eIiv~~~g~~~fL 112 (175)
T PRK13732 75 GAQVYIEGQLRTRSWED--NGITRYVTEILVKTTGTMQML 112 (175)
T ss_pred CCEEEEEEEEEeeeEcc--CCeEEEEEEEEEeecCeEEEe
Confidence 99999999999999986 799999999999999999998
No 8
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=7.4e-29 Score=203.44 Aligned_cols=108 Identities=31% Similarity=0.509 Sum_probs=98.4
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|.+||+|+|+||||+||++|++++|..+++|+||+++.|+++.. | +| .+.++||+|++|| ++|+.+.++|+
T Consensus 1 M~~~N~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~---G---e~--~e~t~w~~Vv~fg-k~AE~v~~~Lk 71 (168)
T PRK06863 1 MAGINKVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNT---G---ER--REVTEWHRIVFYR-RQAEVAGEYLR 71 (168)
T ss_pred CCCccEEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCC---C---cc--cccceEEEEEEEh-HHHHHHHHHCC
Confidence 57799999999999999999999999999999999999876532 2 23 2369999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
||++|+|+|+|+++.|+|+ +|++++.++|+|+ +|+||
T Consensus 72 KGs~V~VeGrL~~r~w~Dk-dG~~r~~~eI~a~---~i~~L 108 (168)
T PRK06863 72 KGSQVYVEGRLKTRKWQDQ-NGQDRYTTEIQGD---VLQML 108 (168)
T ss_pred CCCEEEEEEEEEeCCccCC-CCCEEEEEEEEEe---EEEEC
Confidence 9999999999999999998 9999999999999 88887
No 9
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=201.62 Aligned_cols=113 Identities=27% Similarity=0.550 Sum_probs=100.8
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+..||+|+|+|+|++||+++++++|+++++|+||+++.|+++.. + +| .+.|+||+|++|++++|+.+.++|
T Consensus 1 Ma~~mN~V~LiGrLg~DPElR~t~sG~~v~~fsVAvn~~~kd~~~---G---e~--~e~T~w~~Vv~fg~~~Ae~~~~~L 72 (166)
T PRK06341 1 MAGSVNKVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNS---G---ER--KEKTEWHRVVIFNEGLCKVAEQYL 72 (166)
T ss_pred CCCcceEEEEEEEecCCCEEEEcCCCCEEEEEEEEEccceecCCC---C---cc--cccceEEEEEEeChHHHHHHHHhc
Confidence 445699999999999999999999999999999999999987532 2 34 247999999999845999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
+||++|+|+|+|++++|+++ +|++++.+||+|+. +..|+||
T Consensus 73 kKG~~V~VeGrL~~r~w~dk-dG~~r~~~eIiv~~~~~~l~~l 114 (166)
T PRK06341 73 KKGAKVYIEGQLQTRKWTDQ-SGVERYSTEVVLQGFNSTLTML 114 (166)
T ss_pred CCCCEEEEEEEEEeCcEECC-CCCEEEEEEEEEEecccceEEc
Confidence 99999999999999999998 99999999999996 5677886
No 10
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=192.52 Aligned_cols=99 Identities=21% Similarity=0.354 Sum_probs=92.3
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
||+|+|+|+||+|||++++++|..+++|+||+++.|++. .++||+|++|| ++|+.+.++|+||+
T Consensus 3 ~N~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~---------------~t~w~~v~~wg-~~Ae~~~~~l~KG~ 66 (121)
T PRK07459 3 LNSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDD---------------EPDWFNLEIWG-KTAQVAADYVKKGS 66 (121)
T ss_pred ccEEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCC---------------CceEEEEEEeh-HHHHHHHHHcCCCC
Confidence 899999999999999999999999999999999887531 58899999998 89999999999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+|+|+|+|+++.|+++.+|++++.++|+|+ +|+||
T Consensus 67 ~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~---~i~~L 101 (121)
T PRK07459 67 LIGITGSLKFDRWTDRNTGEDRSKPVIRVD---RLELL 101 (121)
T ss_pred EEEEEEEEEecceEcCCCCeEEEEEEEEEe---EEEEC
Confidence 999999999999999823999999999999 88887
No 11
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=203.44 Aligned_cols=108 Identities=30% Similarity=0.507 Sum_probs=98.9
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|..||+|+|+|||++||+++++++|..+++|+||+++.|+++.. + +|. +.|+||+|++|+ ++|+.+.++|+
T Consensus 1 Mas~N~V~LiGrLg~DPElr~t~nG~~va~fsVAv~~~~kdk~s---G---e~~--e~T~w~~V~~fG-k~AE~v~~~Lk 71 (182)
T PRK06958 1 MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKAS---G---EFK--EATEWHRVAFFG-RLAEIVGEYLK 71 (182)
T ss_pred CCcccEEEEEEEecCCCeEEEcCCCCEEEEEEEEeccccccccC---C---ccc--ccceEEEEEEeh-HHHHHHHHHhC
Confidence 46699999999999999999999999999999999999986632 2 342 369999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
||++|+|+|+|+++.|+|+ +|++++.++|+|+ .|+||
T Consensus 72 KGs~V~VeGrL~~~~yeDk-dG~kr~~~eVvA~---~V~fL 108 (182)
T PRK06958 72 KGSSVYIEGRIRTRKWQGQ-DGQDRYSTEIVAD---QMQML 108 (182)
T ss_pred CCCEEEEEEEEEeCceECC-CCcEEEEEEEEEe---EEEEC
Confidence 9999999999999999998 9999999999999 88887
No 12
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=1.9e-28 Score=203.29 Aligned_cols=105 Identities=22% Similarity=0.304 Sum_probs=96.7
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
+||+|+|+|||++|||+|++++|..++.|+||+++.|++.. | +| .+.++||+|++|| ++|+.+.++|+||
T Consensus 1 m~N~V~LvGrL~~DPElr~t~sG~~va~fslAv~r~~~~~~----G---e~--~e~t~fi~v~~fg-~~AE~~~~~l~KG 70 (182)
T PRK08486 1 MFNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKKQD----G---EK--GEEVCFIDIRLFG-RTAEIANQYLSKG 70 (182)
T ss_pred CeeEEEEEEEecCCCEEEECCCCCEEEEEEEEEecceecCC----C---CC--cccceEEEEEEEh-HHHHHHHHHcCCC
Confidence 47999999999999999999999999999999999987542 3 33 2379999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.|+++ +|++++.++|+|+ .|+||
T Consensus 71 ~~V~VeGrL~~~~y~dk-dG~~r~~~eI~a~---~v~~L 105 (182)
T PRK08486 71 SKVLIEGRLTFESWMDQ-NGQKRSKHTITAE---SMQML 105 (182)
T ss_pred CEEEEEEEEEeCcEECC-CCcEEEEEEEEEe---EEEEC
Confidence 99999999999999998 9999999999999 88887
No 13
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=99.96 E-value=6.1e-28 Score=190.43 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=94.1
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
|||+|+|+|+||+||+++++++|..+++|+||++++|+++. | +| .++||+|++|| ++|+.+.++|+||
T Consensus 1 mmN~v~LiGrL~~dPelr~t~~g~~~~~fslAv~~~~k~~~----g---~~----~t~w~~v~~fg-~~Ae~v~~~l~KG 68 (131)
T PRK07274 1 MYNKVILIGRLTATPELVKTANDKSVARVTLAVNRRFKNQN----G---ER----EADFINVVLWG-KLAETLASYASKG 68 (131)
T ss_pred CeeEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCceecCC----C---CE----EEEEEEEEEeh-HHHHHHHHHcCCC
Confidence 58999999999999999999999999999999999987542 3 22 69999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.| ++ +|++++.++|+|+ +|.||
T Consensus 69 ~~V~V~Grl~~~~y-~k-dG~~~~~~eviv~---~i~~l 102 (131)
T PRK07274 69 SLISIDGELRTRKY-EK-DGQTHYVTEVLCQ---SFQLL 102 (131)
T ss_pred CEEEEEEEEEeccC-cc-CCcEEEEEEEEEE---EEEEC
Confidence 99999999999999 77 9999999999999 88876
No 14
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=99.95 E-value=8.6e-28 Score=197.99 Aligned_cols=103 Identities=19% Similarity=0.303 Sum_probs=95.2
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
|||+|+|+|+|++||++|++++|.+++.|+||+++.|+++. + +| .++||+|++|| ++|+.+.++|+||
T Consensus 1 MmN~V~LiGrL~~DpelR~t~sG~~v~~fslAvnr~~~~~~----g---e~----~tdwi~~v~wg-k~Ae~~~~~l~KG 68 (173)
T PRK06751 1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQ----G---ER----EADFINCVIWR-KQAENVANYLKKG 68 (173)
T ss_pred CceEEEEEEEECCCCcEEECCCCCEEEEEEEEEccceecCC----C---CE----EEEEEEEEEeC-cHHHHHHHHcCCC
Confidence 48999999999999999999999999999999999887542 3 22 68999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.|+++ +|++++.+||+|+ .|+||
T Consensus 69 ~~V~VeGrL~~r~yedk-dG~~~~~~eVva~---~i~~l 103 (173)
T PRK06751 69 SLAGVDGRLQTRNYEGQ-DGKRVYVTEVLAE---SVQFL 103 (173)
T ss_pred CEEEEEEEEEeCccCCC-CCcEEEEEEEEEE---EEEeC
Confidence 99999999999999998 9999999999999 88887
No 15
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=99.95 E-value=9.4e-28 Score=193.21 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=95.4
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcE----EEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhc
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRT----VTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKH 155 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~----v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~ 155 (199)
|||+|+|+||||+||+++++++|.. +++|+||+++.|++.. | +|.+ ..++||+|++|| ++|+.+.++
T Consensus 1 M~N~V~LiGrLg~DPElr~t~~G~~~~~~va~fslA~~r~~~~~~----G---e~~~-~~t~w~~V~~wg-~~Ae~v~~~ 71 (148)
T PRK08182 1 MSTHFVGEGNIGSAPEYREFPNGNDEPRRLLRLNVYFDNPVPTKD----G---EYED-RGGFWAPVELWH-RDAEHWARL 71 (148)
T ss_pred CccEEEEEEECCCCCeEEECCCCCeeeeeEEEEEEEecCceECCC----C---CEEe-cCcEEEEEEEEh-HHHHHHHHh
Confidence 4799999999999999999999986 9999999999987542 2 4533 268999999998 899999999
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|+||++|+|+|+|+++.|+++ ||++++.++|+|+ .|.||
T Consensus 72 l~KG~~V~V~GrL~~~~w~dk-dG~~r~~~eI~a~---~i~~l 110 (148)
T PRK08182 72 YQKGMRVLVEGRMERDEWTDN-EDNERVTFKVEAR---RVGIL 110 (148)
T ss_pred cCCCCEEEEEEEEEecccCCC-CCCEEEEEEEEEe---EEEEc
Confidence 999999999999999999998 9999999999999 77775
No 16
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.7e-27 Score=192.33 Aligned_cols=107 Identities=29% Similarity=0.480 Sum_probs=97.5
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|++||+|+|+|+|++||++|++++|..++.|+||+++.|+++. | +|. ..++||+|++|| ++|+.+.++|+
T Consensus 1 m~m~N~V~L~G~l~~dPe~r~t~~G~~v~~fsvA~~~~~~~~~----G---~~~--~~t~~~~v~~wg-~~Ae~~~~~l~ 70 (164)
T TIGR00621 1 MRMVNKVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQD----G---EWK--EETEWHDIVIFG-RLAEVAAQYLK 70 (164)
T ss_pred CCcccEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCceecCC----C---CEe--ccceEEEEEEeh-HHHHHHHHhCC
Confidence 5789999999999999999999999999999999999987652 2 343 369999999998 79999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
||++|+|+|+|+++.|+++ +|++++.++|+|+ +|.||
T Consensus 71 KG~~V~V~G~L~~~~~~~k-dG~~~~~~ev~a~---~i~~L 107 (164)
T TIGR00621 71 KGSLVYVEGRLRTRKWEDQ-NGQKRSKTEIIAD---NVQLL 107 (164)
T ss_pred CCCEEEEEEEEEeceEECC-CCcEEEEEEEEEE---EEeec
Confidence 9999999999999999998 9999999999999 66665
No 17
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=99.95 E-value=6.2e-27 Score=190.82 Aligned_cols=99 Identities=18% Similarity=0.349 Sum_probs=91.9
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
||+|+|+||||+||+++++++|+.+++|+||+++++. ++ ..|+||+|++|+ ++|+.+.++|+||+
T Consensus 1 MN~V~LiGrLg~DPElR~t~sG~~v~~FsLAvn~~~~-------~~-------~~T~wi~v~awg-~~Ae~v~~yL~KG~ 65 (161)
T PRK06293 1 MMFGYIVGRLGADPEERMTSKGKRVVVLRLGVKSRVG-------SK-------DETVWCRCNIWG-NRYDKMLPYLKKGS 65 (161)
T ss_pred CeEEEEEEEecCCCeEEEcCCCCEEEEEEEEEeCCCC-------Cc-------cceEEEEEEEEh-HHHHHHHHhCCCCC
Confidence 7999999999999999999999999999999997642 11 279999999998 89999999999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+|+|+|+|+++.|+++ +|++++.++|+|+ +|.||
T Consensus 66 ~V~VeGrL~~~~y~dk-dG~kr~~~eIva~---~I~fl 99 (161)
T PRK06293 66 GVIVAGEMSPESYVDK-DGSPQSSLVVSVD---TIKFS 99 (161)
T ss_pred EEEEEEEEEeCccCCC-CCCEEEEEEEEEe---EEEEC
Confidence 9999999999999998 9999999999999 88887
No 18
>KOG1653 consensus Single-stranded DNA-binding protein [Replication, recombination and repair]
Probab=99.94 E-value=2.7e-27 Score=191.42 Aligned_cols=120 Identities=46% Similarity=0.700 Sum_probs=100.6
Q ss_pred ccccCCCCcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch
Q 029088 69 FDRPLENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL 148 (199)
Q Consensus 69 ~~r~~~~~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l 148 (199)
.-+|++ +.+++|+|+|+|+||+||.+|...||++|+.|+|+|+.+|+++.. +.+ .| ...++||+|.+|++++
T Consensus 45 ~~~p~k--~~~~vnkv~lvG~VGqdPl~k~~rngrpVtiFsv~T~~~~k~r~~-q~g---~~--~~~tqWHRVsVf~~~L 116 (175)
T KOG1653|consen 45 GEDPRK--LERGVNKVILVGRVGQDPLQKILRNGRPVTIFSVGTGGMFKQRLY-QAG---DQ--PQPTQWHRVSVFNEVL 116 (175)
T ss_pred ccchhh--hhcccceEEEEcccccchHHHhhcCCCeEEEEEeecCcccccccc-ccC---Cc--CCcceeEEEEeeCchH
Confidence 346666 568999999999999999999999999999999999999987642 222 34 4589999999999999
Q ss_pred HHHHhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 149 GGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 149 Ae~v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|+++.++|+||++|||||+|+++-+.+++.|..+.+.++++.+ .++||
T Consensus 117 ~d~~~k~lkKGsriyveG~iey~g~~~d~~g~~~r~~t~iIa~--~v~Fl 164 (175)
T KOG1653|consen 117 ADYALKYLKKGSRIYVEGKIEYRGENDDIQGNVKRIPTIIIAR--DVSFL 164 (175)
T ss_pred HHHHHHHhcCCCEEEEeeeEEeeeeeccccCceeecceEEEec--hhHHH
Confidence 9999999999999999999999888887799985555555443 46665
No 19
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=99.94 E-value=4e-26 Score=169.90 Aligned_cols=104 Identities=26% Similarity=0.409 Sum_probs=91.7
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
||+|+|+|+|++||+++++++|..++.|+||+++.|++.. ++ + ...++||+|++|| ++|+.+.++|+||+
T Consensus 1 mN~v~l~G~l~~~p~~~~~~~g~~~~~f~la~~~~~~~~~----~~---~--~~~~~~~~v~~~g-~~A~~~~~~l~kG~ 70 (104)
T PF00436_consen 1 MNKVTLIGRLGKDPELRYTKNGTPVARFSLAVNRRFKDDG----GE---G--DEKTDWINVVAWG-KLAENVAEYLKKGD 70 (104)
T ss_dssp EEEEEEEEEESSSEEEEEETTSEEEEEEEEEEEEEEEETT----SC---E--EEEEEEEEEEEEH-HHHHHHHHH--TT-
T ss_pred CcEEEEEEEECCCcEEEECCCCCEEEEEEEEEecEEeeee----cc---C--ccceEEEEEEeee-ecccccceEEcCCC
Confidence 7999999999999999999999999999999999987621 11 1 2489999999998 79999999999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
.|+|+|+|+++.|+++ +|++++.++|.|+ +|.||
T Consensus 71 ~V~V~G~l~~~~~~~~-~G~~~~~~~i~a~---~i~fl 104 (104)
T PF00436_consen 71 RVYVEGRLRTRTYEDK-DGQKRYRVEIIAD---NIEFL 104 (104)
T ss_dssp EEEEEEEEEEEEEEST-TSSEEEEEEEEEE---EEEE-
T ss_pred EEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEeC
Confidence 9999999999999998 8999999999999 88887
No 20
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=99.94 E-value=8.1e-26 Score=188.11 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=97.7
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|.++|+|+|+|||++||++|++++|..+++|+||++.++.++. .+ +|.|. .++||+|++|+ ++|++++++|+
T Consensus 1 m~~~~~VtLiGrL~~DPElR~t~sG~~va~FrVAv~~r~~~~~---~g---~~~d~-~t~fi~V~~Wg-~~Ae~va~~L~ 72 (186)
T PRK07772 1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQ---TN---EWKDG-EALFLRCSIWR-QAAENVAESLT 72 (186)
T ss_pred CCccCEEEEEEEeCCCCeEEEcCCCCEEEEEEEEecCcceecC---CC---cEecc-CceEEEEEEec-HHHHHHHHhcC
Confidence 4578999999999999999999999999999999986544442 12 56543 79999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCC-cEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNG-TYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g-~l~fl 198 (199)
||++|+|+|+|++++|+++ +|++++.++|+|++.| .|.++
T Consensus 73 KGd~V~V~GrL~~r~wedk-dG~~rt~~eV~a~~Vg~~L~~~ 113 (186)
T PRK07772 73 KGMRVIVTGRLKQRSYETR-EGEKRTVVELEVDEIGPSLRYA 113 (186)
T ss_pred CCCEEEEEEEEEcCceECC-CCCEEEEEEEEEEEcccceeee
Confidence 9999999999999999998 9999999999999854 56554
No 21
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.7e-25 Score=180.66 Aligned_cols=108 Identities=28% Similarity=0.418 Sum_probs=88.1
Q ss_pred cCceEEEEEEeCCCCeEEEeC-CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLK-SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~-~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
+||+|+|+|||++|||+++++ +|..++.|++++++.+++. .++. ...++||+|++|| ++|+.+.+||+|
T Consensus 2 ~~Nkv~LvG~l~~DPE~r~t~~g~~~v~~~~~a~~r~~~~~-~~~~--------~~~t~~~~vv~wg-k~Ae~~~~yl~K 71 (167)
T COG0629 2 MMNKVILVGRLTRDPELRYTPNGGAVVALFSAAVNRRFDNQ-SGER--------DEETDWIRVVIWG-KLAENAAEYLKK 71 (167)
T ss_pred CcceEEEEeecccCcceeecCCCCeeeEEEEEEeccccccC-Cccc--------ccccceEEEEEeh-HHHHHHHHHhcC
Confidence 799999999999999999999 4567777777777665432 1111 2378999999998 799999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
|++|+|+|+|+++.|+++ +|+.+|.++++++. ...++||
T Consensus 72 G~~V~VeG~l~~~~~~~~-~G~~r~~~~~~~~~v~~~~~~l 111 (167)
T COG0629 72 GSLVYVEGRLQTRKWEDQ-EGQKRYQTEIVTEIVADSVQML 111 (167)
T ss_pred CCEEEEEEEEEeeeeecC-CCcceeeEEEEEEEeehhhhhc
Confidence 999999999999999998 99888888887775 2344443
No 22
>PRK05853 hypothetical protein; Validated
Probab=99.92 E-value=1.9e-24 Score=176.32 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=89.7
Q ss_pred EEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEEEE
Q 029088 86 LVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVE 165 (199)
Q Consensus 86 LiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~Ve 165 (199)
|+|||++||+++++. |..+++|+||++++|+++. | +|.+ ..++||+|++|| ++|+++.++|+||++|+|+
T Consensus 1 ivGrLg~DPelr~~~-g~~va~F~lAvn~r~~~~~----G---e~~d-~~T~wi~V~~wg-~lAe~v~~~L~KG~~V~V~ 70 (161)
T PRK05853 1 VVGHIVNDPQRRKVG-DQEVIKFRVASNSRRRTAD----G---GWEP-GNSLFITVNCWG-RLVTGVGAALGKGAPVIVV 70 (161)
T ss_pred CeEcccCCCEEEEEC-CceEEEEEEEECCCeECCC----C---CEec-cCccEEEEEEEh-HHHHHHHHHcCCCCEEEEE
Confidence 689999999999985 6899999999999987542 3 4644 269999999998 8999999999999999999
Q ss_pred EEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 166 GNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 166 GrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
|+|++++|+++ +|++++.++|+|+. +..|.++
T Consensus 71 GrL~~~~wedk-dG~~r~~~eV~a~~Vg~dL~~~ 103 (161)
T PRK05853 71 GHVYTSEYEDR-DGNRRSSLEMRATSVGPDLSRC 103 (161)
T ss_pred EEEEccceECC-CCCEEEEEEEEEEEeccccccc
Confidence 99999999998 99999999999997 4555554
No 23
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=177.61 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=89.6
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
..||+|+|+|+|++||+++++++|.+++.|+||+++.|+ .++||+|+||| ++|+.+. +|+|
T Consensus 107 ~~~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~-----------------~td~i~~v~wg-~~Ae~~~-~l~K 167 (219)
T PRK05813 107 KNPNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYN-----------------KSDYIPCIAWG-RNARFCK-TLEV 167 (219)
T ss_pred CCccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCC-----------------CceEEEEEEEh-HHhHHHh-hCCC
Confidence 579999999999999999999999999999999997753 47899999998 8999876 6999
Q ss_pred CCEEEEEEEeEeeeeeCCCC----CeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPIT----GLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~d----G~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++.|+++ + |++|+.+||.|+ +|+||
T Consensus 168 G~~V~V~GrL~sr~y~~k-~g~~~g~kr~~~eV~v~---~i~~l 207 (219)
T PRK05813 168 GDNIRVWGRVQSREYQKK-LSEGEVVTKVAYEVSIS---KMEKV 207 (219)
T ss_pred CCEEEEEEEEEecceEcC-CCCccceEEEEEEEEEE---EEEEc
Confidence 999999999999999987 5 589999999999 88887
No 24
>PRK02801 primosomal replication protein N; Provisional
Probab=99.89 E-value=2.3e-22 Score=152.32 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=85.4
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
+||+|+|+|+|++||++|++++|.+++.|+||+... ... .+ +. ++.++|++|++|| +.|+.+.+||+||
T Consensus 1 mmN~v~L~Grl~~dpelr~Tp~G~~v~~f~La~~~~-~~e----a~----~~-r~~~~~i~~va~G-~~Ae~~~~~l~kG 69 (101)
T PRK02801 1 MTNRLVLSGTVCRTPKRKVSPSGIPHCQFVLEHRSV-QEE----AG----LH-RQAWCRMPVIVSG-NQFQAITQSITVG 69 (101)
T ss_pred CccEEEEEEEECcCcceEECCCCCeEEEEEEEEeCe-Eec----CC----Cc-eeEEEEEEEEEEc-HHHHHHHhhcCCC
Confidence 489999999999999999999999999999999633 211 11 11 3367999999999 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|.|+|+|++ |+++ +|++++. |+++ .|+||
T Consensus 70 s~v~V~G~L~~--~~~~-~g~~~~~--v~~~---~i~~l 100 (101)
T PRK02801 70 SKITVQGFISC--HQGR-NGLSKLV--LHAE---QIELI 100 (101)
T ss_pred CEEEEEEEEEE--eECC-CCCEEEE--EEEE---EEEEC
Confidence 99999999998 6777 8988876 8888 88886
No 25
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=99.88 E-value=1.6e-21 Score=143.60 Aligned_cols=100 Identities=29% Similarity=0.475 Sum_probs=90.0
Q ss_pred EEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEE
Q 029088 84 AILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIY 163 (199)
Q Consensus 84 viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~ 163 (199)
|+|+|+|+++|+++++++|..++.|+|++++.+++.. |. ...++||+|++|| ++|+.++++|+|||.|+
T Consensus 1 v~l~G~l~~~p~~~~~~~g~~~~~~~v~~~~~~~~~~---------~~-~~~~~~~~v~~~g-~~a~~~~~~~~kG~~V~ 69 (100)
T cd04496 1 VILIGRLGKDPELRYTPSGTPVARFSLAVNRRRKDRD---------EE-EEETDWIRVVAFG-KLAENAAKYLKKGDLVY 69 (100)
T ss_pred CEEEEEecCCCEEEECCCCCEEEEEEEEEcCceeccc---------cc-ccccEEEEEEEEh-HHHHHHHHHhCCCCEEE
Confidence 5799999999999999999999999999999987541 10 2379999999998 79999999999999999
Q ss_pred EEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 164 VEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 164 VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|+|+|+.+.|+++ +|..++..+|.|+ .|.+|
T Consensus 70 v~G~l~~~~~~~~-~g~~~~~~~i~~~---~i~~~ 100 (100)
T cd04496 70 VEGRLRTRSWEDK-DGQKRYGTEVVAD---RIEFL 100 (100)
T ss_pred EEEEEEeceeECC-CCCEEEEEEEEEE---EEEEC
Confidence 9999999999998 8999999999999 66664
No 26
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=146.17 Aligned_cols=93 Identities=25% Similarity=0.173 Sum_probs=85.5
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
.|+|+|+|+|++||+++++..|..++.|+|||++ +. + .++||+|++|+ ++|+.+. ++||+
T Consensus 8 ~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R-~s-~---------------~~D~i~v~v~~-rlae~~~--l~kG~ 67 (219)
T PRK05813 8 NNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPR-LS-D---------------SKDILPVTVSE-RLLAGMD--LKVGT 67 (219)
T ss_pred cCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeec-cC-C---------------CccEEEEEEEh-hhhhhhc--ccCCC
Confidence 5999999999999999999999999999999998 54 1 58899999997 8999998 99999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
.|+|+|+|+ +|++.++|++|+.++|.|+ +|+||
T Consensus 68 ~v~VeGqlr--sy~~~~~G~~R~vl~V~a~---~i~~l 100 (219)
T PRK05813 68 LVIVEGQLR--SYNKFIDGKNRLILTVFAR---NIEYC 100 (219)
T ss_pred EEEEEEEEE--EeccCCCCcEEEEEEEEEE---EEEEc
Confidence 999999999 7877646999999999999 88887
No 27
>PRK00036 primosomal replication protein N; Reviewed
Probab=97.91 E-value=0.00015 Score=55.81 Aligned_cols=78 Identities=15% Similarity=0.071 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
||+++|+|.|++-|.+++++.|-+++.|.|.-..... +.|-+ +..---+.+++.| .+|+.+.+ +..|+
T Consensus 1 mN~l~Ltg~v~~~~~lryTPAGIp~~~~~LeH~S~q~-----EAG~~-----Rqv~~~i~ava~G-~~a~~~~~-l~~Gs 68 (107)
T PRK00036 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVV-----EAGHP-----RRVELTISAVALG-DLALLLAD-TPLGT 68 (107)
T ss_pred CCEEEEEEEEeccCccccCCCCCceEEEEEEEeEEeE-----eCCCc-----ceEEEEEEEEEEh-hHHHHhcc-cCCCC
Confidence 5999999999999999999999999999998765532 22332 1123345678998 79998886 99999
Q ss_pred EEEEEEEeEe
Q 029088 161 TIYVEGNLEQ 170 (199)
Q Consensus 161 ~V~VeGrL~~ 170 (199)
.|.|+|=|..
T Consensus 69 ~v~v~GFLa~ 78 (107)
T PRK00036 69 EMQVQGFLAP 78 (107)
T ss_pred EEEEEEEEEE
Confidence 9999999988
No 28
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.0013 Score=49.97 Aligned_cols=82 Identities=24% Similarity=0.219 Sum_probs=66.0
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEE--EEEEeCcchHHHHhhcC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWH--RVSVYPERLGGVVMKHL 156 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~--~V~~~g~~lAe~v~~~L 156 (199)
...|++.|.|-|++-|..+++++|-+.+.|-|.-....- +.|. ..--|. +|.+-| +.|+.+-.++
T Consensus 2 ~~~Nrl~L~g~vak~~~r~~sPsGIphc~f~Lehrs~q~-----Eag~-------~RQv~~~mpv~vsG-~qa~~lt~~i 68 (103)
T COG2965 2 NMTNRLSLSGTVAKVPVRRYSPSGIPHCQFVLEHRSWQE-----EAGF-------QRQVWCEMPVRVSG-RQAEELTQSI 68 (103)
T ss_pred CccceEEEEEEeeccceeeeCCCCCeeEEEEEeecchhh-----hCCc-------ceeEEEEccEEeec-hhhhhhhhcc
Confidence 467999999999999999999999999999998754321 1222 245566 456677 8999999899
Q ss_pred CCCCEEEEEEEeEeeee
Q 029088 157 VPGSTIYVEGNLEQKVF 173 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~ 173 (199)
..|+.|.|+|=|....-
T Consensus 69 ~~Gs~i~v~GFla~~~~ 85 (103)
T COG2965 69 TVGSYILVVGFLACHKR 85 (103)
T ss_pred ccccEEEEEEEEEeecc
Confidence 99999999999987753
No 29
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=96.44 E-value=0.042 Score=37.43 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=45.2
Q ss_pred EEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEE
Q 029088 84 AILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIY 163 (199)
Q Consensus 84 viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~ 163 (199)
|.+.|.|.+-. .++..++.|+|.-. +.-++|.+|+ ..+....+.+++|+.|.
T Consensus 1 V~v~G~V~~~~-----~~~~~~~~~~l~D~----------------------tg~i~~~~~~-~~~~~~~~~l~~g~~v~ 52 (75)
T PF01336_consen 1 VTVEGRVTSIR-----RSGGKIVFFTLEDG----------------------TGSIQVVFFN-EEYERFREKLKEGDIVR 52 (75)
T ss_dssp EEEEEEEEEEE-----EEETTEEEEEEEET----------------------TEEEEEEEET-HHHHHHHHTS-TTSEEE
T ss_pred CEEEEEEEEEE-----cCCCCEEEEEEEEC----------------------CccEEEEEcc-HHhhHHhhcCCCCeEEE
Confidence 56888887732 44556777776432 2368899997 68888888999999999
Q ss_pred EEEEeEee
Q 029088 164 VEGNLEQK 171 (199)
Q Consensus 164 VeGrL~~~ 171 (199)
|.|.++..
T Consensus 53 v~G~v~~~ 60 (75)
T PF01336_consen 53 VRGKVKRY 60 (75)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999887
No 30
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=95.67 E-value=0.083 Score=39.68 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=52.9
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCC---cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSG---RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G---~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~ 153 (199)
|.++++.+.|.|+|..-=+++.+.++ ..+..|.|+-. .+.-+++++|+ ..|+...
T Consensus 5 L~p~~~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De---------------------~~~~I~~t~~~-~~~~~f~ 62 (104)
T cd04474 5 LNPYQNKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDE---------------------DGGEIRATFFN-DAVDKFY 62 (104)
T ss_pred ccCCCCcEEEEEEEeeccccccccCCCCCcEEEEEEEEEC---------------------CCCEEEEEEeh-HHHHHhh
Confidence 56788999999999986666776653 44555554321 23468999998 7999999
Q ss_pred hcCCCCCEEEEEEE
Q 029088 154 KHLVPGSTIYVEGN 167 (199)
Q Consensus 154 ~~L~KG~~V~VeGr 167 (199)
..|+.|+.++|.+=
T Consensus 63 ~~l~eG~vy~i~~~ 76 (104)
T cd04474 63 DLLEVGKVYYISKG 76 (104)
T ss_pred cccccccEEEEecc
Confidence 99999999999983
No 31
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.66 E-value=0.11 Score=37.63 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC-CCCE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV-PGST 161 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~-KG~~ 161 (199)
.|++.|.|-. .+.+.+.+|+....|.|.- | ++-+.|..|....- .....++ +|+-
T Consensus 1 ~v~i~G~Vf~-~e~re~k~g~~i~~~~itD---~-------------------t~Si~~K~F~~~~~-~~~~~ik~~G~~ 56 (82)
T cd04484 1 NVVVEGEVFD-LEIRELKSGRKILTFKVTD---Y-------------------TSSITVKKFLRKDE-KDKEELKSKGDW 56 (82)
T ss_pred CEEEEEEEEE-EEEEEecCCCEEEEEEEEc---C-------------------CCCEEEEEeccCCh-hHHhhcccCCCE
Confidence 3789999966 7889999998888887763 1 22467777762122 2335699 9999
Q ss_pred EEEEEEeEeeeeeC
Q 029088 162 IYVEGNLEQKVFND 175 (199)
Q Consensus 162 V~VeGrL~~~~~~d 175 (199)
|.|.|.++...|..
T Consensus 57 v~v~G~v~~D~f~~ 70 (82)
T cd04484 57 VRVRGKVQYDTFSK 70 (82)
T ss_pred EEEEEEEEEccCCC
Confidence 99999999999964
No 32
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=95.60 E-value=0.43 Score=33.07 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEE
Q 029088 84 AILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIY 163 (199)
Q Consensus 84 viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~ 163 (199)
+.+.|-|.+ ++.+++| .+.|+|.-.. .=+.|++|. ...+.+...|++|+.|.
T Consensus 2 ~~v~g~v~~---i~~tk~g--~~~~~L~D~~----------------------~~i~~~~f~-~~~~~~~~~l~~g~~v~ 53 (78)
T cd04489 2 VWVEGEISN---LKRPSSG--HLYFTLKDED----------------------ASIRCVMWR-SNARRLGFPLEEGMEVL 53 (78)
T ss_pred EEEEEEEec---CEECCCc--EEEEEEEeCC----------------------eEEEEEEEc-chhhhCCCCCCCCCEEE
Confidence 457777775 4445666 6666665431 247899997 67777888999999999
Q ss_pred EEEEeEeeee
Q 029088 164 VEGNLEQKVF 173 (199)
Q Consensus 164 VeGrL~~~~~ 173 (199)
|+|++....+
T Consensus 54 v~g~v~~~~~ 63 (78)
T cd04489 54 VRGKVSFYEP 63 (78)
T ss_pred EEEEEEEECC
Confidence 9999997543
No 33
>PF11506 DUF3217: Protein of unknown function (DUF3217); InterPro: IPR024506 This family of proteins with unknown function appears to be restricted to Mycoplasma.; PDB: 2HQL_E.
Probab=94.20 E-value=1.7 Score=32.42 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=58.9
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
++|.|.|.|-|-+ .+...+ +.-...++.-.+.|- + +.-|+|+-+-+-| .+|--+.+|.+|=
T Consensus 1 MLN~V~LEG~IeS---~kWS~~-KTGF~VTI~QkR~FG--------~------r~FTDyyViYAN~-QL~~ELEky~~k~ 61 (104)
T PF11506_consen 1 MLNTVFLEGEIES---YKWSKK-KTGFLVTIKQKRKFG--------E------RTFTDYYVIYANG-QLAFELEKYTQKH 61 (104)
T ss_dssp --EEEEEEEEEEE---EEE-TT-SSEEEEEEEEEEEET--------T------EEEEEEEEEEEEH-HHHHHHHHHHTT-
T ss_pred CcceEEEeceeeh---hccccc-CceEEEEEeehhhhc--------c------ccceeEEEEEECC-eeehhHHHhhhhc
Confidence 4799999999876 444433 222234455554442 2 2468999999987 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEE
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIA 188 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~ 188 (199)
..+.|+|.|++..- +..|......+++
T Consensus 62 k~isieG~L~TY~e--kkS~iWKT~I~~~ 88 (104)
T PF11506_consen 62 KTISIEGILRTYLE--KKSKIWKTTIEAV 88 (104)
T ss_dssp SEEEEEEEEEEEEE--TTTTEEEEEEEEE
T ss_pred eEEEEeeehhhHHH--HhcccceeeEEEE
Confidence 99999999988643 3267655544443
No 34
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=93.90 E-value=0.38 Score=33.23 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=39.4
Q ss_pred CCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEe
Q 029088 93 SPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQ 170 (199)
Q Consensus 93 dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~ 170 (199)
....+.+++|+.++.|+|.-.. --+.|.+|++.. .....+++|..|+|.|++..
T Consensus 8 ~~~~~~tk~g~~~~~~~l~D~t----------------------g~i~~~~f~~~~--~~~~~l~~g~~v~v~G~v~~ 61 (83)
T cd04492 8 SKELRTAKNGKPYLALTLQDKT----------------------GEIEAKLWDASE--EDEEKFKPGDIVHVKGRVEE 61 (83)
T ss_pred EeeeecccCCCcEEEEEEEcCC----------------------CeEEEEEcCCCh--hhHhhCCCCCEEEEEEEEEE
Confidence 3455677888888877776431 147899997333 44778999999999999954
No 35
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=93.75 E-value=0.74 Score=31.33 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=42.6
Q ss_pred EEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEEEE
Q 029088 86 LVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVE 165 (199)
Q Consensus 86 LiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~Ve 165 (199)
+.|-|.. ...+.+++|+.++.++|.-. +.-+.|.+|+ ..-+...+.+++|..|.|.
T Consensus 2 i~g~v~~-~~~~~~k~g~~~~~~~l~D~----------------------tg~~~~~~f~-~~~~~~~~~l~~g~~v~v~ 57 (84)
T cd04485 2 VAGLVTS-VRRRRTKKGKRMAFVTLEDL----------------------TGSIEVVVFP-ETYEKYRDLLKEDALLLVE 57 (84)
T ss_pred EEEEEEE-eEEEEcCCCCEEEEEEEEeC----------------------CCeEEEEECH-HHHHHHHHHhcCCCEEEEE
Confidence 5566654 34566778888877776332 1137899996 4434457789999999999
Q ss_pred EEeEe
Q 029088 166 GNLEQ 170 (199)
Q Consensus 166 GrL~~ 170 (199)
|.+..
T Consensus 58 G~v~~ 62 (84)
T cd04485 58 GKVER 62 (84)
T ss_pred EEEEe
Confidence 99965
No 36
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=92.84 E-value=1.3 Score=28.77 Aligned_cols=33 Identities=21% Similarity=0.454 Sum_probs=28.4
Q ss_pred eEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEe
Q 029088 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQ 170 (199)
Q Consensus 137 ~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~ 170 (199)
..+.|.+|. ...+.....+++|+.|.|+|++..
T Consensus 29 ~~i~~~~~~-~~~~~~~~~~~~g~~v~v~g~v~~ 61 (75)
T cd03524 29 GTIRVTLFG-ELAEELENLLKEGQVVYIKGKVKK 61 (75)
T ss_pred CEEEEEEEc-hHHHHHHhhccCCCEEEEEEEEEe
Confidence 478999997 677777788999999999999965
No 37
>PRK07211 replication factor A; Reviewed
Probab=91.70 E-value=0.79 Score=43.80 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=54.1
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCC---Cc--EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHH
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKS---GR--TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGG 150 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~---G~--~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe 150 (199)
.|.++++.|.|.|+|..--++|++.+ +. .+..+.|+-. |-=+++++|+ ..|+
T Consensus 58 dL~pg~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~De----------------------TG~Ir~TlW~-d~ad 114 (485)
T PRK07211 58 DIEPGMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADE----------------------TGSVRVAFWD-EQAV 114 (485)
T ss_pred hCCCCCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcC----------------------CCeEEEEEec-hHhH
Confidence 35688999999999999888777753 22 4444444321 2258999998 7898
Q ss_pred HHhhcCCCCCEEEEEEEeE
Q 029088 151 VVMKHLVPGSTIYVEGNLE 169 (199)
Q Consensus 151 ~v~~~L~KG~~V~VeGrL~ 169 (199)
..+..|++|+.++|.|+..
T Consensus 115 ~~~~~Le~GdV~~I~~~~~ 133 (485)
T PRK07211 115 AAEEELEVGQVLRIKGRPK 133 (485)
T ss_pred hhhcccCCCCEEEEeceEe
Confidence 8999999999999998763
No 38
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=90.95 E-value=3 Score=30.73 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=50.4
Q ss_pred EEEE-eCCCCeEEE-eCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEE
Q 029088 86 LVGQ-VGQSPVQKK-LKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIY 163 (199)
Q Consensus 86 LiG~-Ig~dPe~k~-~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~ 163 (199)
|.|+ |..-|+... .++|-..-.|-|-++.. .+..+.+.+|| ..++.+ ..++.|+.|-
T Consensus 2 i~Gkii~~l~~~~g~s~~Gw~Kre~Vlet~~q-------------------YP~~i~f~~~~-dk~~~l-~~~~~Gd~V~ 60 (84)
T PF11325_consen 2 ITGKIIKVLPEQQGVSKNGWKKREFVLETEEQ-------------------YPQKICFEFWG-DKIDLL-DNFQVGDEVK 60 (84)
T ss_pred cccEEEEEecCcccCcCCCcEEEEEEEeCCCc-------------------CCceEEEEEEc-chhhhh-ccCCCCCEEE
Confidence 5677 444455433 34674444455554433 34578889998 455543 4699999999
Q ss_pred EEEEeEeeeeeCCCCCeEEEEEEEEE
Q 029088 164 VEGNLEQKVFNDPITGLVRRIREIAI 189 (199)
Q Consensus 164 VeGrL~~~~~~d~~dG~~r~~~eI~v 189 (199)
|.=.|+.+.|+ .++...|.|
T Consensus 61 Vsf~i~~RE~~------gr~fn~i~a 80 (84)
T PF11325_consen 61 VSFNIEGREWN------GRWFNSIRA 80 (84)
T ss_pred EEEEeeccEec------ceEeeEeEE
Confidence 99999999996 245556655
No 39
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=90.24 E-value=1.1 Score=31.67 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEE
Q 029088 84 AILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIY 163 (199)
Q Consensus 84 viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~ 163 (199)
|.+.|.|.+.+. ++|..+ |+| +|. ..=++|++|. ..+..+...++.||.|.
T Consensus 1 v~v~GeVs~~~~----~~GHvy--fsL------kD~----------------~a~i~cv~f~-~~~~~~~~~l~~Gd~V~ 51 (73)
T cd04487 1 VHIEGEVVQIKQ----TSGPTI--FTL------RDE----------------TGTVWAAAFE-EAGVRAYPEVEVGDIVR 51 (73)
T ss_pred CEEEEEEecccc----CCCCEE--EEE------EcC----------------CEEEEEEEEc-hhccCCcCCCCCCCEEE
Confidence 457888888662 667633 555 211 1137899996 56555777799999999
Q ss_pred EEEEeEe
Q 029088 164 VEGNLEQ 170 (199)
Q Consensus 164 VeGrL~~ 170 (199)
|.|++..
T Consensus 52 v~G~v~~ 58 (73)
T cd04487 52 VTGEVEP 58 (73)
T ss_pred EEEEEec
Confidence 9999874
No 40
>PRK15491 replication factor A; Provisional
Probab=89.38 E-value=4.2 Score=37.52 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=51.7
Q ss_pred ccCceEEEEEEeCCCCeEEEe--CCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 79 PGIFKAILVGQVGQSPVQKKL--KSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~--~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
.+...|.+.|+|..--+.+.+ +.|...-.|++.... . . . -+++++|+ ..|+.+ ..|
T Consensus 174 ~~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D----e----t----------G--~Ir~t~W~-~~a~~~-~~l 231 (374)
T PRK15491 174 DGDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGD----E----T----------G--KIRVTLWD-GKTDLA-DKL 231 (374)
T ss_pred CCCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEEC----C----C----------C--eEEEEEec-chhccc-ccC
Confidence 345669999999987666665 357654555554421 1 1 1 38999998 688876 679
Q ss_pred CCCCEEEEEE-EeEeeeee
Q 029088 157 VPGSTIYVEG-NLEQKVFN 174 (199)
Q Consensus 157 ~KG~~V~VeG-rL~~~~~~ 174 (199)
..|+.|+|.+ +.+...|.
T Consensus 232 ~~Gd~V~i~~~~~r~~~~~ 250 (374)
T PRK15491 232 ENGDSVEIINGYARTNNYS 250 (374)
T ss_pred CCCCEEEEEeceEEEeccC
Confidence 9999999865 67776663
No 41
>PRK15491 replication factor A; Provisional
Probab=86.76 E-value=7.2 Score=35.98 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCcCccCceEEEEEEeCCCCeEEEeC--CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHH
Q 029088 75 NGLDPGIFKAILVGQVGQSPVQKKLK--SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (199)
Q Consensus 75 ~~~~~~~N~viLiG~Ig~dPe~k~~~--~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v 152 (199)
..|.++++.|.|.|+|-+--+.|++. .|...-.+++-+.. .|--+++++|+ ..|+.+
T Consensus 61 ~dL~~~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~D--------------------eTG~ir~tlW~-~~a~~~ 119 (374)
T PRK15491 61 ADINESSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVAD--------------------ETGSIRLTLWD-DLADLI 119 (374)
T ss_pred HHCCCCCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEc--------------------CCCeEEEEEEC-chhhhh
Confidence 34567889999999999886777763 35333334333321 11148999997 788887
Q ss_pred h-hcCCCCCEEEEEEE
Q 029088 153 M-KHLVPGSTIYVEGN 167 (199)
Q Consensus 153 ~-~~L~KG~~V~VeGr 167 (199)
. ..|.+|+.|.|.|.
T Consensus 120 ~~~~le~G~v~~I~~~ 135 (374)
T PRK15491 120 KTGDIEVGKSLNISGY 135 (374)
T ss_pred ccCCcCCCCEEEEeee
Confidence 6 47999999999986
No 42
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=86.62 E-value=13 Score=28.90 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=42.4
Q ss_pred cCccCceEEEEEEeCCC--CeEEEeCCCc-EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHh
Q 029088 77 LDPGIFKAILVGQVGQS--PVQKKLKSGR-TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~d--Pe~k~~~~G~-~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~ 153 (199)
|.++++.|.++|.|-+- +....+++|. .+..+.|+- . |--+++++|+ ..|
T Consensus 10 L~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D------~----------------TG~I~~tlW~-~~a---- 62 (129)
T PRK06461 10 LKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGD------E----------------TGRVKLTLWG-EQA---- 62 (129)
T ss_pred cCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEEC------C----------------CCEEEEEEeC-Ccc----
Confidence 44567888899999863 3333455553 355444421 1 1138899998 444
Q ss_pred hcCCCCCEEEEE-EEeE
Q 029088 154 KHLVPGSTIYVE-GNLE 169 (199)
Q Consensus 154 ~~L~KG~~V~Ve-GrL~ 169 (199)
..+++|+.|.|. |..+
T Consensus 63 ~~l~~GdvV~I~na~v~ 79 (129)
T PRK06461 63 GSLKEGEVVEIENAWTT 79 (129)
T ss_pred ccCCCCCEEEEECcEEe
Confidence 358899999999 5555
No 43
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=85.87 E-value=5.7 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.3
Q ss_pred EEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEee
Q 029088 138 WHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~ 171 (199)
-+.++.|+ . ..++.+.+++|+.++|.|.+...
T Consensus 30 ~i~~~~F~-~-~~~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 30 TLTLVFFN-F-QPYLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred EEEEEEEC-C-CHHHHhcCCCCCEEEEEEEEeec
Confidence 36788886 2 34677889999999999999753
No 44
>PRK07211 replication factor A; Reviewed
Probab=85.73 E-value=9.4 Score=36.60 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=52.9
Q ss_pred ccCCCCcCccCceEEEEEEeCCCCeEEEeC--CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch
Q 029088 71 RPLENGLDPGIFKAILVGQVGQSPVQKKLK--SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL 148 (199)
Q Consensus 71 r~~~~~~~~~~N~viLiG~Ig~dPe~k~~~--~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l 148 (199)
.||.. |.++++.+.|+|+|-.--++|++. +|..--.|++-... . +--+++++|+ ..
T Consensus 162 ~~I~d-L~~~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~D----e----------------TG~IR~TlW~-d~ 219 (485)
T PRK07211 162 YTVED-LSLGLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGD----E----------------TGRVRVTLWD-DR 219 (485)
T ss_pred ccHHH-cCCCCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEc----C----------------CCeEEEEEec-hh
Confidence 44442 456789999999999877777664 45444445544421 1 1149999998 78
Q ss_pred HHHHhhcCCCCCEEEEEE-EeE
Q 029088 149 GGVVMKHLVPGSTIYVEG-NLE 169 (199)
Q Consensus 149 Ae~v~~~L~KG~~V~VeG-rL~ 169 (199)
|+.+ ..|.+|+.|.|.+ +++
T Consensus 220 Ad~~-~~le~G~Vv~I~~a~Vr 240 (485)
T PRK07211 220 ADLA-EELDAGESVEIVDGYVR 240 (485)
T ss_pred hhhh-ccCCCCCEEEEEeeEEE
Confidence 8888 6799999999975 444
No 45
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=84.68 E-value=11 Score=34.99 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=58.5
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
+..|-+.|.|.. ++...+|..| |+|.-. ..-++|++|. ..+..+.-.++.|+
T Consensus 23 ~~~v~v~gEis~---~~~~~sGH~Y--f~Lkd~----------------------~a~i~~~~~~-~~~~~~~~~~~~G~ 74 (438)
T PRK00286 23 LGQVWVRGEISN---FTRHSSGHWY--FTLKDE----------------------IAQIRCVMFK-GSARRLKFKPEEGM 74 (438)
T ss_pred CCcEEEEEEeCC---CeeCCCCeEE--EEEEcC----------------------CcEEEEEEEc-ChhhcCCCCCCCCC
Confidence 678899999988 5555667644 666322 1247999996 78888877899999
Q ss_pred EEEEEEEeEeeeeeCCCCCe-EEEEEEEEEEeCCcE
Q 029088 161 TIYVEGNLEQKVFNDPITGL-VRRIREIAIRRNGTY 195 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~-~r~~~eI~v~~~g~l 195 (199)
.|+|.|++.. |+. .|. ..+..+|....-|+|
T Consensus 75 ~v~v~g~~~~--y~~--~g~~ql~v~~i~~~g~G~l 106 (438)
T PRK00286 75 KVLVRGKVSL--YEP--RGDYQLIVEEIEPAGIGAL 106 (438)
T ss_pred EEEEEEEEEE--ECC--CCCEEEEEEEeeeCCccHH
Confidence 9999999987 544 463 445556655444544
No 46
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=83.07 E-value=2 Score=31.97 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHh-hcCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM-KHLVP 158 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~-~~L~K 158 (199)
.+..+-+.|.|.. ++.-.+|. +-|+|.-.+ .=++|++|. ..+..+. ..++.
T Consensus 20 ~~~~vwV~GEIs~---~~~~~~gh--~YftLkD~~----------------------a~i~~~~~~-~~~~~i~~~~l~~ 71 (99)
T PF13742_consen 20 PLPNVWVEGEISN---LKRHSSGH--VYFTLKDEE----------------------ASISCVIFR-SRARRIRGFDLKD 71 (99)
T ss_pred CcCCEEEEEEEee---cEECCCce--EEEEEEcCC----------------------cEEEEEEEH-HHHhhCCCCCCCC
Confidence 3678889999988 55544554 556665411 257999996 7888887 88999
Q ss_pred CCEEEEEEEeEee
Q 029088 159 GSTIYVEGNLEQK 171 (199)
Q Consensus 159 G~~V~VeGrL~~~ 171 (199)
|+.|.|.|++...
T Consensus 72 G~~V~v~g~~~~y 84 (99)
T PF13742_consen 72 GDKVLVRGRVSFY 84 (99)
T ss_pred CCEEEEEEEEEEE
Confidence 9999999999764
No 47
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=82.50 E-value=15 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=25.4
Q ss_pred EEEEEEeCcchHH-HHhhcCCCCCEEEEEEEe
Q 029088 138 WHRVSVYPERLGG-VVMKHLVPGSTIYVEGNL 168 (199)
Q Consensus 138 w~~V~~~g~~lAe-~v~~~L~KG~~V~VeGrL 168 (199)
-+.|.+|++..+. .....+..|..|+|.|++
T Consensus 29 ~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v 60 (79)
T cd04490 29 RITVLLTKDKEELFEEAEDILPDEVIGVSGTV 60 (79)
T ss_pred EEEEEEeCchhhhhhhhhhccCCCEEEEEEEE
Confidence 4789999854441 667889999999999999
No 48
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=81.88 E-value=2 Score=31.61 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred EEEEEEeCcch--HHHHhhcCCCCCEEEEEEEeEeee
Q 029088 138 WHRVSVYPERL--GGVVMKHLVPGSTIYVEGNLEQKV 172 (199)
Q Consensus 138 w~~V~~~g~~l--Ae~v~~~L~KG~~V~VeGrL~~~~ 172 (199)
-++|++|. .. +..+...|+.||.|.|.|.+....
T Consensus 29 ~i~cv~f~-~~g~~~~~~~~l~~Gd~V~v~G~v~~y~ 64 (91)
T cd04482 29 EIDCAAYE-PTKEFRDVVRLLIPGDEVTVYGSVRPGT 64 (91)
T ss_pred EEEEEEEC-cccccccccCCCCCCCEEEEEEEEecCC
Confidence 47899995 55 567778899999999999986553
No 49
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=80.95 E-value=6.3 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=44.0
Q ss_pred eCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeE
Q 029088 90 VGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLE 169 (199)
Q Consensus 90 Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~ 169 (199)
+.++.++++++||+++..++|+-.. | -++..+|. ..+.....+.+|+.|.|+|.+.
T Consensus 19 lv~~~~~~~~knG~~yl~l~l~D~t----------G------------~I~ak~W~--~~~~~~~~~~~g~vv~v~G~v~ 74 (314)
T PRK13480 19 LIKSATKGVASNGKPFLTLILQDKS----------G------------DIEAKLWD--VSPEDEATYVPETIVHVKGDII 74 (314)
T ss_pred EEEEceeeecCCCCeEEEEEEEcCC----------c------------EEEEEeCC--CChhhHhhcCCCCEEEEEEEEE
Confidence 4556888999999999999887531 2 36778886 3455567799999999999997
Q ss_pred e
Q 029088 170 Q 170 (199)
Q Consensus 170 ~ 170 (199)
.
T Consensus 75 ~ 75 (314)
T PRK13480 75 N 75 (314)
T ss_pred E
Confidence 4
No 50
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=80.01 E-value=6.7 Score=36.70 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=57.1
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
+..|-+.|.|.. ++.-.+|.. -|+| +|. ..=++|++|. ..+..+.-.++-|+
T Consensus 17 ~~~v~V~GEisn---~~~~~sGH~--YFtL------kD~----------------~a~i~~vmf~-~~~~~l~f~~~~G~ 68 (432)
T TIGR00237 17 FLQVWIQGEISN---FTQPVSGHW--YFTL------KDE----------------NAQVRCVMFR-GNNNRLKFRPQNGQ 68 (432)
T ss_pred CCcEEEEEEecC---CeeCCCceE--EEEE------EcC----------------CcEEEEEEEc-ChhhCCCCCCCCCC
Confidence 678999999998 665567764 4666 221 1247999996 78888877799999
Q ss_pred EEEEEEEeEeeeeeCCCCCe-EEEEEEEEEEeCCcE
Q 029088 161 TIYVEGNLEQKVFNDPITGL-VRRIREIAIRRNGTY 195 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~-~r~~~eI~v~~~g~l 195 (199)
.|+|.|++.. |+. .|. ..+..+|....-|.|
T Consensus 69 ~V~v~g~v~~--y~~--~G~~ql~v~~i~~~G~G~l 100 (432)
T TIGR00237 69 QVLVRGGISV--YEP--RGDYQIICFEMQPAGEGLL 100 (432)
T ss_pred EEEEEEEEEE--ECC--CCcEEEEEEEeccCChHHH
Confidence 9999999975 444 574 344555544433433
No 51
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.93 E-value=22 Score=34.90 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=63.2
Q ss_pred cCCCCcCccCceEEEEEEeCCCCeEEEeCC--C-cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch
Q 029088 72 PLENGLDPGIFKAILVGQVGQSPVQKKLKS--G-RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL 148 (199)
Q Consensus 72 ~~~~~~~~~~N~viLiG~Ig~dPe~k~~~~--G-~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l 148 (199)
||. .|.+++++.+|.|||..--++|...+ | ..+..|.|. |. .+ =+++++|+ ..
T Consensus 182 pI~-~L~py~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~------De----gg------------~Irat~f~-~~ 237 (608)
T TIGR00617 182 PIA-SLSPYQNKWTIKARVTNKSEIRTWSNARGEGKLFNVELL------DE----SG------------EIRATAFN-EQ 237 (608)
T ss_pred EHH-HCCCCCCceEEEEEEEeccccceecCCCCCceeeEEEEe------cC----CC------------eEEEEECc-hH
Confidence 444 36788999999999999888887653 2 234444332 21 11 37999998 79
Q ss_pred HHHHhhcCCCCCEEEEEE-EeEe--eeeeCCCCCeEEEEEEEEEEeCCcEE
Q 029088 149 GGVVMKHLVPGSTIYVEG-NLEQ--KVFNDPITGLVRRIREIAIRRNGTYL 196 (199)
Q Consensus 149 Ae~v~~~L~KG~~V~VeG-rL~~--~~~~d~~dG~~r~~~eI~v~~~g~l~ 196 (199)
|+...+.|+.|+.++|.+ +++. ..|.. .+ ..+||..+....|+
T Consensus 238 ~dkf~~~l~eG~VY~Is~~~Vk~an~~y~~--~~---~~yei~f~~~T~I~ 283 (608)
T TIGR00617 238 ADKFYDIIQEGKVYYISKGSLKPANKQFTN--LG---NDYEMTLDRDTVIE 283 (608)
T ss_pred HHHHhhhcccCCEEEECceEEEEccccccC--CC---CCEEEEECCCeEEE
Confidence 999999999999999955 5543 33432 12 23566555444443
No 52
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=78.19 E-value=12 Score=35.34 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=45.6
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
.|.+.|-|.. ...+.+++|..++.++|.-. +--+.|++|. +.-+.....|++|..|
T Consensus 282 ~v~vaG~I~~-ik~~~TKkG~~maf~~leD~----------------------tG~ie~vvFp-~~y~~~~~~l~~~~~v 337 (449)
T PRK07373 282 KVSAVVMLNE-VKKIVTKKGDPMAFLQLEDL----------------------SGQSEAVVFP-KSYERISELLQVDARL 337 (449)
T ss_pred EEEEEEEEEE-eEecccCCCCEEEEEEEEEC----------------------CCCEEEEECH-HHHHHHHHHhccCCEE
Confidence 4666666665 34445666766665555432 2237899996 7888888899999999
Q ss_pred EEEEEeEe
Q 029088 163 YVEGNLEQ 170 (199)
Q Consensus 163 ~VeGrL~~ 170 (199)
+|+|+++.
T Consensus 338 ~v~G~v~~ 345 (449)
T PRK07373 338 IIWGKVDR 345 (449)
T ss_pred EEEEEEEe
Confidence 99999964
No 53
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.04 E-value=18 Score=30.69 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=54.0
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
.-+|++.++|-|...+.+- ....+.+++|+-. ..+.|.-.=-|. --|..+.+.+.+
T Consensus 43 ~k~nRifivGtltek~~i~---ed~~~~R~rVvDp--------------------TGsF~Vyag~yq-PEa~a~l~~ve~ 98 (196)
T COG3390 43 LKVNRIFIVGTLTEKEGIG---EDREYWRIRVVDP--------------------TGSFYVYAGQYQ-PEAKAFLEDVEV 98 (196)
T ss_pred hheeEEEEEEEEEeccCcC---CcccEEEEEEecC--------------------CceEEEEcCCCC-hHHHHHHHhccC
Confidence 4589999999999865442 1256888887632 134565444555 467778888999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEE
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVR 182 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r 182 (199)
++.|.|.|.+++ |++. +|...
T Consensus 99 ~~~VaViGKi~~--y~~d-~g~~~ 119 (196)
T COG3390 99 PDLVAVIGKIRT--YRTD-EGVVL 119 (196)
T ss_pred CceEEEecccce--eecC-CCceE
Confidence 999999998765 6665 57654
No 54
>PRK14699 replication factor A; Provisional
Probab=77.65 E-value=13 Score=35.47 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=52.1
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeC--CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHh
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLK--SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~--~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~ 153 (199)
.+.+++..|.+.|+|-.-...|++. +|...-..++-.. | .|=-+++++|. .+|+.+.
T Consensus 62 di~~~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~ia----D----------------eTG~ir~tlW~-~~a~~~~ 120 (484)
T PRK14699 62 NITPESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVG----D----------------ETGKIKLTLWD-NMADLIK 120 (484)
T ss_pred HccCCCceEEEEEEEEEecCceEEecCCCCceEEEEEEEe----c----------------CCCeEEEEEec-Cccchhh
Confidence 3456789999999999987777763 3432222222221 1 12258999997 7888777
Q ss_pred h-cCCCCCEEEEEEEeEeeeee
Q 029088 154 K-HLVPGSTIYVEGNLEQKVFN 174 (199)
Q Consensus 154 ~-~L~KG~~V~VeGrL~~~~~~ 174 (199)
. .|++||.|.|.|. .+.|.
T Consensus 121 ~g~l~~GDvv~I~~~--~r~~~ 140 (484)
T PRK14699 121 AGKIKAGQTLQISGY--AKQGY 140 (484)
T ss_pred hcCCCCCCEEEEcce--eccCC
Confidence 6 6999999999995 55564
No 55
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=76.64 E-value=14 Score=39.16 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=54.1
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCc-chHHHHhhcCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLVP 158 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~-~lAe~v~~~L~K 158 (199)
..+.|++.|.|-. .+.+.+++|+.+..|.|.- | ++-+.|..|.. +.-......+++
T Consensus 6 ~~~~~~~~g~i~~-~~~~~~~~~~~~~~~~~~d---~-------------------~~s~~~k~f~~~~~~~~~~~~~~~ 62 (1213)
T TIGR01405 6 EENRVKIEGYIFK-IEIKELKSGRTLLKIKVTD---Y-------------------TDSLILKKFLKSEEDPEKFDGIKI 62 (1213)
T ss_pred cCCeEEEEEEEEE-EEeEeccCCCEEEEEEEEc---C-------------------CCCEEEEEecccccchHHHhhcCC
Confidence 4589999999965 7788999999888887762 1 22456667752 111233467999
Q ss_pred CCEEEEEEEeEeeeeeC
Q 029088 159 GSTIYVEGNLEQKVFND 175 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d 175 (199)
|+-|.|.|++....|..
T Consensus 63 g~~~~~~g~~~~d~~~~ 79 (1213)
T TIGR01405 63 GKWVRARGKIELDNFSR 79 (1213)
T ss_pred CcEEEEEEEEeccCCCC
Confidence 99999999999999875
No 56
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=73.70 E-value=17 Score=39.39 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=54.7
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCc-chHHHHhhcCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLV 157 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~-~lAe~v~~~L~ 157 (199)
...+.|++.|.|-. .+.+.+.+|+....|.|.- | ++-+.|..|.+ +.-......++
T Consensus 234 ~~~~~v~i~G~if~-~e~~~~k~~~~~~~~~~td---~-------------------~~s~~~k~f~~~~~~~~~~~~~~ 290 (1437)
T PRK00448 234 EEERRVVVEGYVFK-VEIKELKSGRHILTFKITD---Y-------------------TSSIIVKKFSRDKEDLKKFDEIK 290 (1437)
T ss_pred ccCCeEEEEEEEEE-EEEEeccCCCEEEEEEEEc---C-------------------CCCEEEEEEecCcchhHHHhcCC
Confidence 34689999999966 7888999999888888831 1 22455666651 11223446799
Q ss_pred CCCEEEEEEEeEeeeeeC
Q 029088 158 PGSTIYVEGNLEQKVFND 175 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d 175 (199)
+|+-|.|.|++....|..
T Consensus 291 ~g~~v~~~g~~~~d~~~~ 308 (1437)
T PRK00448 291 KGDWVKVRGSVQNDTFTR 308 (1437)
T ss_pred CCCEEEEEEEEeccCCCC
Confidence 999999999999999875
No 57
>PRK08402 replication factor A; Reviewed
Probab=72.72 E-value=30 Score=31.84 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=45.6
Q ss_pred cCccCceEEEEEEeCCCCeEEEe--CCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKL--KSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~--~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
+.+++..|.++|+|.+--+.|.+ .+|..--.+++... | .|-..++++|+ ..|.....
T Consensus 68 l~~g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~----D----------------eTG~ir~TlW~-~~a~~~~~ 126 (355)
T PRK08402 68 LVPGMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIY----D----------------DTGRARVVLWD-AKVAKYYN 126 (355)
T ss_pred ccCCCceeeEEEEEEEccCCceeeccCCCcceEEEEEEE----c----------------CCCeEEEEEec-hhhhhhcc
Confidence 45677899999999985444443 34543222222221 1 12256999998 67776566
Q ss_pred cCCCCCEEEEEEEe
Q 029088 155 HLVPGSTIYVEGNL 168 (199)
Q Consensus 155 ~L~KG~~V~VeGrL 168 (199)
.+.+|+.|.|.|--
T Consensus 127 ~l~~Gdvi~I~~a~ 140 (355)
T PRK08402 127 KINVGDVIKVIDAQ 140 (355)
T ss_pred cCCCCCEEEEECCE
Confidence 79999999997533
No 58
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=72.34 E-value=18 Score=38.16 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=48.0
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..|.+.|-|.. ...+.+++|+.++.++|.-. +--+.+++|. +.=+.....|.+|..
T Consensus 978 ~~V~v~G~I~~-vk~~~TKkG~~mafltLeD~----------------------TG~iEvviFp-~~ye~~~~~L~~g~i 1033 (1135)
T PRK05673 978 SVVTVAGLVVS-VRRRVTKRGNKMAIVTLEDL----------------------SGRIEVMLFS-EALEKYRDLLEEDRI 1033 (1135)
T ss_pred ceEEEEEEEEE-EEecccCCCCeEEEEEEEeC----------------------CCcEEEEECH-HHHHHHHHHhccCCE
Confidence 45667776665 55666778888877776542 1137899997 565777778999999
Q ss_pred EEEEEEeEe
Q 029088 162 IYVEGNLEQ 170 (199)
Q Consensus 162 V~VeGrL~~ 170 (199)
|+|+|+++.
T Consensus 1034 V~V~GkVe~ 1042 (1135)
T PRK05673 1034 VVVKGQVSF 1042 (1135)
T ss_pred EEEEEEEEe
Confidence 999999964
No 59
>PRK12366 replication factor A; Reviewed
Probab=70.62 E-value=40 Score=33.29 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=53.1
Q ss_pred ccCCCCcCcc-C-ceEEEEEEeCCCCeEEEeCC--CcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCc
Q 029088 71 RPLENGLDPG-I-FKAILVGQVGQSPVQKKLKS--GRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE 146 (199)
Q Consensus 71 r~~~~~~~~~-~-N~viLiG~Ig~dPe~k~~~~--G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~ 146 (199)
-|+.. |.+. . +.+.|.|+|..--++|++.+ |. --.|++.... . .| =+++++|+
T Consensus 280 ~pI~~-L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~-gkv~s~~l~D----~----tG------------~IR~t~w~- 336 (637)
T PRK12366 280 VNIEE-LTEFEDGEEVDVKGRIIAISDKREVERDDRT-AEVQDIELAD----G----TG------------RVRVSFWG- 336 (637)
T ss_pred eeHHH-CCcccCCCEEEEEEEEEecCCceEEEcCCCc-EEEEEEEEEc----C----CC------------eEEEEEeC-
Confidence 45553 3344 3 48999999999988888753 33 4446654431 1 11 38999998
Q ss_pred chHHHHhhcCCCCCEEEEEE-EeEeeeeeC
Q 029088 147 RLGGVVMKHLVPGSTIYVEG-NLEQKVFND 175 (199)
Q Consensus 147 ~lAe~v~~~L~KG~~V~VeG-rL~~~~~~d 175 (199)
..|+.... |.+|+.++|.+ +++ .|.+
T Consensus 337 ~~~d~~~~-l~~G~vy~is~~~vk--~y~~ 363 (637)
T PRK12366 337 EKAKILEN-LKEGDAVKIENCKVR--TYYD 363 (637)
T ss_pred chhhhhcc-cCCCCEEEEecCEEe--eccc
Confidence 68887765 78999999988 444 4543
No 60
>PRK12366 replication factor A; Reviewed
Probab=69.59 E-value=20 Score=35.40 Aligned_cols=67 Identities=15% Similarity=0.299 Sum_probs=48.7
Q ss_pred cCccCceEEEEEEeCCCCeEEEeC--CCc--EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHH
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLK--SGR--TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~--~G~--~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v 152 (199)
|.++++.+.|.|+|.+--++|.+. .|. .+..+.|+-. .| -+++++|+ ..|+.
T Consensus 69 l~p~~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~De----------tG------------~Ir~t~W~-~~~~~- 124 (637)
T PRK12366 69 IEEGQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADN----------TG------------TIRLTLWN-DNAKL- 124 (637)
T ss_pred CcCCCcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcC----------CC------------EEEEEEEc-hhhhh-
Confidence 567889999999999877777663 353 3444444321 11 38999998 67876
Q ss_pred hhcCCCCCEEEEEEE
Q 029088 153 MKHLVPGSTIYVEGN 167 (199)
Q Consensus 153 ~~~L~KG~~V~VeGr 167 (199)
...|.+|+.+.|.+-
T Consensus 125 ~~~le~G~v~~i~~~ 139 (637)
T PRK12366 125 LKGLKEGDVIKIENA 139 (637)
T ss_pred hccCCCCCEEEEecc
Confidence 578999999999985
No 61
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=66.91 E-value=41 Score=23.48 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred EEEEEEeCcchHHHHhhcCCCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEe
Q 029088 138 WHRVSVYPERLGGVVMKHLVPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~KG~~V~Ve-GrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~f 197 (199)
-+++++|+ ..+ ...+..|+.|.+. |+++ .|. | ..++.+...+.|..
T Consensus 35 ~i~~~~W~-~~~---~~~~~~G~vv~i~~~~v~--~~~----g----~~ql~i~~~~~i~~ 81 (82)
T cd04491 35 TIRFTLWD-EKA---ADDLEPGDVVRIENAYVR--EFN----G----RLELSVGKNSEIEK 81 (82)
T ss_pred EEEEEEEC-chh---cccCCCCCEEEEEeEEEE--ecC----C----cEEEEeCCceEEEE
Confidence 48899997 455 6679999999999 6654 353 2 24555666666543
No 62
>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []. It includes the proteins POT1 and CDC13 which have been shown to regulate telomere length, replication and capping [, , ]. ; GO: 0003677 DNA binding, 0000723 telomere maintenance, 0000784 nuclear chromosome, telomeric region; PDB: 1S40_A 1KXL_A 1PH7_A 1PH9_A 1PH2_A 1OTC_A 1PHJ_A 1JB7_A 1PA6_A 1PH1_A ....
Probab=65.39 E-value=65 Score=25.30 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=53.1
Q ss_pred CceEEEEEEeCCCCeE--EEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 81 IFKAILVGQVGQSPVQ--KKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~--k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
-..|.++|=|...-.. +.+.++...+.|+| +.....+ .+ + ....+.|.+|. ...+.+-.--..
T Consensus 12 ~~~vnvigVV~~~~~p~~~~t~g~D~~~tl~i-~D~S~~~------~~---~----~~~~l~v~iF~-~~~~~LP~v~~~ 76 (146)
T PF02765_consen 12 GKFVNVIGVVVDFSPPNPKKTRGTDYMCTLTI-TDPSLND------SN---Q----KLSGLTVNIFR-PHKESLPNVKSV 76 (146)
T ss_dssp SEEEEEEEEEEEEEEECTEEESSSCEEEEEEE-EBTTCSC------SS---C----CCCEEEEEEEE-SSHHHSCTTCST
T ss_pred CCEEEEEEEEEEccCCcceEcCCCcEEEEEEE-ECCCCCc------cc---c----ccCCEEEEEEC-CCHHHCCCCCCC
Confidence 3567788888776444 55666778888888 2222211 10 0 12789999996 677777654444
Q ss_pred CCEEEEEEEeEeeeeeCC
Q 029088 159 GSTIYVEGNLEQKVFNDP 176 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~ 176 (199)
||.|.+. +++...|.++
T Consensus 77 GDii~l~-r~kv~~~~~~ 93 (146)
T PF02765_consen 77 GDIIRLR-RVKVQSYNGK 93 (146)
T ss_dssp THEEEEE-EEEEEEETTE
T ss_pred CCEEEEE-EEEEEEECCE
Confidence 9988887 7888888653
No 63
>PRK14699 replication factor A; Provisional
Probab=64.77 E-value=50 Score=31.63 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=48.7
Q ss_pred cCccCceEEEEEEeCCCCeEEEeC--CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLK--SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~--~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
|.+++..|.+.|+|.+--+.|++. +|..--.+++-.. | .|-=+++++|+ ..|+ +..
T Consensus 172 L~~~~~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~ig----D----------------eTG~ir~tlW~-~~a~-~~~ 229 (484)
T PRK14699 172 IKDGMGDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLG----D----------------ETGTLRVTLWD-DKTD-FLN 229 (484)
T ss_pred cCCCCCceEEEEEEEeccCceEEecCCCCceEEEEEEEE----c----------------CCceEEEEEEC-cccc-ccc
Confidence 445567799999999988777654 4543222333221 1 12258999998 5675 444
Q ss_pred cCCCCCEEEEEE-EeEeeee
Q 029088 155 HLVPGSTIYVEG-NLEQKVF 173 (199)
Q Consensus 155 ~L~KG~~V~VeG-rL~~~~~ 173 (199)
-|.+|+.|.|.+ ..+.+.|
T Consensus 230 ~l~~Gd~v~I~~a~vr~~~~ 249 (484)
T PRK14699 230 QIEYGDTVELINAYARENAF 249 (484)
T ss_pred ccCCCCEEEEecceEeeccc
Confidence 699999999764 5566555
No 64
>PLN02903 aminoacyl-tRNA ligase
Probab=64.44 E-value=1e+02 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=22.4
Q ss_pred EEEEEeCcchHH--HHhhcCCCCCEEEEEEEeEee
Q 029088 139 HRVSVYPERLGG--VVMKHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 139 ~~V~~~g~~lAe--~v~~~L~KG~~V~VeGrL~~~ 171 (199)
.+|++-.....+ ...+.|..|+.|.|+|.+..+
T Consensus 102 iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r 136 (652)
T PLN02903 102 VQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSR 136 (652)
T ss_pred EEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 466665321122 234679999999999999865
No 65
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=63.22 E-value=27 Score=33.17 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=48.6
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
+-.|-+.|.|.. ++.-++|.. -|+|-- ...-++|++|. .....+.-.++-|+
T Consensus 23 ~~~V~v~GEISn---~t~~~sgH~--YFtLKD----------------------~~A~i~c~mf~-~~~~~l~f~p~eG~ 74 (440)
T COG1570 23 LGQVWVRGEISN---FTRPASGHL--YFTLKD----------------------ERAQIRCVMFK-GNNRRLKFRPEEGM 74 (440)
T ss_pred CCeEEEEEEecC---CccCCCccE--EEEEcc----------------------CCceEEEEEEc-CcccccCCCccCCC
Confidence 688999999988 665667743 344421 23368999996 78888887899999
Q ss_pred EEEEEEEeEeee
Q 029088 161 TIYVEGNLEQKV 172 (199)
Q Consensus 161 ~V~VeGrL~~~~ 172 (199)
.|+|.|++....
T Consensus 75 ~V~v~G~is~Y~ 86 (440)
T COG1570 75 QVLVRGKISLYE 86 (440)
T ss_pred EEEEEEEEEEEc
Confidence 999999997643
No 66
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=62.33 E-value=44 Score=25.15 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..+++.|.|...|+.. +. ..+|.+.+.+-.. . ++ + ...-.++.++-++.... .++.||.
T Consensus 76 ~~~~v~g~V~~~~~~~----~~-~~~~~~~~~~~~~-~-----~~---~----~~~~~~i~~~~~~~~~~---~l~~Gd~ 134 (176)
T PF13567_consen 76 KEVTVQGTVESVPQID----GR-GQRFTLRVERVLA-G-----GN---W----IPVSGKILLYLPKDSQP---RLQPGDR 134 (176)
T ss_pred ceEEEEEEEccccccc----Cc-eEEEEEEEEEeec-c-----cc---c----cccceeeEEEecccccc---ccCCCCE
Confidence 5678999998888764 11 2267776654211 1 11 0 22233343332222222 6999999
Q ss_pred EEEEEEeEee
Q 029088 162 IYVEGNLEQK 171 (199)
Q Consensus 162 V~VeGrL~~~ 171 (199)
|.++|+|+.=
T Consensus 135 i~~~g~l~~~ 144 (176)
T PF13567_consen 135 IRVRGKLKPP 144 (176)
T ss_pred EEEEEEEecC
Confidence 9999999763
No 67
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=62.16 E-value=37 Score=27.10 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=38.0
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
++.+.++=-|-.+-....+++|+.|..+.||-. |--+++.+|++ .-..+++||
T Consensus 14 ~kN~~v~fIvl~~g~~tkTkdg~~v~~~kVaD~----------------------TgsI~isvW~e-----~~~~~~PGD 66 (134)
T KOG3416|consen 14 LKNINVTFIVLEYGRATKTKDGHEVRSCKVADE----------------------TGSINISVWDE-----EGCLIQPGD 66 (134)
T ss_pred hhcceEEEEEEeeceeeeccCCCEEEEEEEecc----------------------cceEEEEEecC-----cCcccCCcc
Confidence 333333333333344667889998988877642 33578999973 334688899
Q ss_pred EEEEEE
Q 029088 161 TIYVEG 166 (199)
Q Consensus 161 ~V~VeG 166 (199)
.|-+.|
T Consensus 67 IirLt~ 72 (134)
T KOG3416|consen 67 IIRLTG 72 (134)
T ss_pred EEEecc
Confidence 888766
No 68
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=61.54 E-value=1.1e+02 Score=30.71 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=52.7
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..|+++|.|....... ..++...++.+..+ +.-+.++.|+ ..| ++.+.+++|..
T Consensus 61 ~~vti~g~V~~~~~~~--~~~~~~l~v~~~d~----------------------~~~l~l~fFn-~~~-~l~~~~~~G~~ 114 (677)
T COG1200 61 EIVTIEGTVLSHEKFP--FGKRKLLKVTLSDG----------------------TGVLTLVFFN-FPA-YLKKKLKVGER 114 (677)
T ss_pred ceEEEEEEEEeeeccC--CCCCceEEEEEecC----------------------cEEEEEEEEC-ccH-HHHhhCCCCCE
Confidence 5789999998744332 33455555555442 2256788887 455 99999999999
Q ss_pred EEEEEEeEeeeeeCCCCCeEEEEEEEEEE
Q 029088 162 IYVEGNLEQKVFNDPITGLVRRIREIAIR 190 (199)
Q Consensus 162 V~VeGrL~~~~~~d~~dG~~r~~~eI~v~ 190 (199)
|.|.|.+.... .+......++.+.
T Consensus 115 v~v~Gk~~~~~-----~~~~~~hpe~~~~ 138 (677)
T COG1200 115 VIVYGKVKRFK-----GGLQITHPEYIVN 138 (677)
T ss_pred EEEEEEEeecc-----CceEEEcceEEec
Confidence 99999998733 3444555555554
No 69
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=59.97 E-value=45 Score=35.23 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=46.6
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
.|.+.|-|.. ...+.+++|..++-+++.-. +--+.|++|. +.-+.+...|..|..|
T Consensus 945 ~v~v~g~i~~-~~~~~tk~g~~maf~~leD~----------------------tg~~e~~vFp-~~y~~~~~~l~~~~~~ 1000 (1107)
T PRK06920 945 VQRAIVYITS-VKVIRTKKGQKMAFITFCDQ----------------------NDEMEAVVFP-ETYIHFSDKLQEGAIV 1000 (1107)
T ss_pred EEEEEEEEEE-eEeecCCCCCeEEEEEEeeC----------------------CCcEEEEECH-HHHHHHHHHhccCCEE
Confidence 5677777766 33445667777766655432 2237899997 6777788889999999
Q ss_pred EEEEEeEee
Q 029088 163 YVEGNLEQK 171 (199)
Q Consensus 163 ~VeGrL~~~ 171 (199)
+|+|+++.+
T Consensus 1001 ~v~G~v~~~ 1009 (1107)
T PRK06920 1001 LVDGTIELR 1009 (1107)
T ss_pred EEEEEEEec
Confidence 999999653
No 70
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=59.70 E-value=46 Score=35.31 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=45.5
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
.|.+.|-|.. ...+.+++|..++.++|.-. +--+.|++|. +.-+.+...|..|..|
T Consensus 993 ~v~v~g~i~~-~~~~~tk~G~~maf~~leD~----------------------~g~~e~~vfp-~~~~~~~~~l~~~~~~ 1048 (1151)
T PRK06826 993 KVIIGGIITE-VKRKTTRNNEMMAFLTLEDL----------------------YGTVEVIVFP-KVYEKYRSLLNEDNIV 1048 (1151)
T ss_pred EEEEEEEEEE-eEeeccCCCCeEEEEEEEEC----------------------CCcEEEEECH-HHHHHHHHHhccCCEE
Confidence 4566666665 44445667776666665432 2237899997 6667777889999999
Q ss_pred EEEEEeEee
Q 029088 163 YVEGNLEQK 171 (199)
Q Consensus 163 ~VeGrL~~~ 171 (199)
+|+|+++.+
T Consensus 1049 ~v~g~v~~~ 1057 (1151)
T PRK06826 1049 LIKGRVSLR 1057 (1151)
T ss_pred EEEEEEEec
Confidence 999999653
No 71
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=59.40 E-value=44 Score=35.51 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=46.9
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..|.+.|-|.. ...+.+++|..++-++|.-. +--+.|++|. +.-+.+...|..|..
T Consensus 1001 ~~v~v~g~i~~-~k~~~Tk~G~~maf~~leD~----------------------tg~~e~vvFp-~~y~~~~~~l~~~~~ 1056 (1170)
T PRK07374 1001 AKVSAIAMIPE-MKQVTTRKGDRMAILQLEDL----------------------TGSCEAVVFP-KSYERLSDHLMTDTR 1056 (1170)
T ss_pred CEEEEEEEEEE-eEecccCCCCEEEEEEEEEC----------------------CCCEEEEECH-HHHHHHHHHhccCCE
Confidence 45777777765 33445667777766655432 1237899997 677778888999999
Q ss_pred EEEEEEeEe
Q 029088 162 IYVEGNLEQ 170 (199)
Q Consensus 162 V~VeGrL~~ 170 (199)
|+|+|+++.
T Consensus 1057 ~~v~g~v~~ 1065 (1170)
T PRK07374 1057 LLVWAKVDR 1065 (1170)
T ss_pred EEEEEEEEe
Confidence 999999965
No 72
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=52.04 E-value=29 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=20.8
Q ss_pred EeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 169 EQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 169 ~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+.+.|+|. +|.-+.-.+++--.+|+|+++
T Consensus 11 ~~RtWtD~-tG~f~VeA~fv~~~dgkV~L~ 39 (70)
T PF03983_consen 11 KTRTWTDR-TGKFKVEAEFVGVNDGKVHLH 39 (70)
T ss_dssp -SEEEEBS-SS--EEEEEEEEEETTEEEEE
T ss_pred cceEEEeC-CCCEEEEEEEEEeeCCEEEEE
Confidence 56899998 999776777776678988864
No 73
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=50.79 E-value=82 Score=24.09 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=16.2
Q ss_pred EEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEeee
Q 029088 138 WHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKV 172 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~~ 172 (199)
.+.|..-.+.........|+||+.|.|.|...-..
T Consensus 99 ~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g~~ 133 (144)
T PF12869_consen 99 GVQCYFSNDQEKRASVAKLKKGQKVTIKGICTGYS 133 (144)
T ss_dssp S--EEEEEEGGGHHHHHH--TTSEEEEEEE-----
T ss_pred eEEEEEccchhhhhhHhcCCCCCEEEEEEEEEeee
Confidence 34455543221233444699999999999986553
No 74
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=48.24 E-value=81 Score=33.20 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=46.5
Q ss_pred ceEEEEEEeCCCCeEEEeC-CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 82 FKAILVGQVGQSPVQKKLK-SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~-~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
..+.+.|.|..-- .+.++ +|..++.+++.-. +--+.|++|. +.-+.....|..|.
T Consensus 885 ~~~~~~~~i~~~~-~~~tk~~g~~maf~~leD~----------------------~g~ie~~vFp-~~y~~~~~~l~~~~ 940 (1034)
T PRK07279 885 SEATILVQIQSIR-VIRTKTKGQQMAFLSVTDT----------------------KKKLDVTLFP-ETYRQYKDELKEGK 940 (1034)
T ss_pred CcceEEEEEEEEE-EEEEcCCCCeEEEEEEeeC----------------------CCcEEEEECH-HHHHHHHHHhccCC
Confidence 3466778776533 33455 7777776666442 1137899997 66677778899999
Q ss_pred EEEEEEEeEee
Q 029088 161 TIYVEGNLEQK 171 (199)
Q Consensus 161 ~V~VeGrL~~~ 171 (199)
.|+|+|+++.+
T Consensus 941 ~~~v~G~v~~~ 951 (1034)
T PRK07279 941 FYYLKGKIQER 951 (1034)
T ss_pred EEEEEEEEEec
Confidence 99999999663
No 75
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=48.13 E-value=91 Score=30.85 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=42.0
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..+++.|.|..-+... . +...+.+.|.. . +--+.|+.|+ ....++.+.+++|+.
T Consensus 60 ~~vtv~g~V~~~~~~~-~--~~~~~~v~l~D------~----------------tg~i~l~~F~-~n~~~~~~~l~~G~~ 113 (681)
T PRK10917 60 EKVTVEGEVLSAEVVF-G--KRRRLTVTVSD------G----------------TGNLTLRFFN-FNQPYLKKQLKVGKR 113 (681)
T ss_pred CEEEEEEEEEEEEEcc-C--CceEEEEEEEE------C----------------CeEEEEEEEc-cCcHHHHhhCCCCCE
Confidence 5899999998754332 1 45555555532 1 1135667773 113378889999999
Q ss_pred EEEEEEeEe
Q 029088 162 IYVEGNLEQ 170 (199)
Q Consensus 162 V~VeGrL~~ 170 (199)
++|.|.+..
T Consensus 114 ~~v~Gkv~~ 122 (681)
T PRK10917 114 VAVYGKVKR 122 (681)
T ss_pred EEEEEEEEe
Confidence 999999976
No 76
>cd04481 RPA1_DBD_B_like RPA1_DBD_B_like: A subgroup of uncharacterized, plant OB folds with similarity to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change.
Probab=47.60 E-value=33 Score=25.32 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=27.5
Q ss_pred EEEEEEeCcchHHHHhhcCC---CCCEEE-EEEEeEeeeeeC
Q 029088 138 WHRVSVYPERLGGVVMKHLV---PGSTIY-VEGNLEQKVFND 175 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~---KG~~V~-VeGrL~~~~~~d 175 (199)
-+.|++|| ..|+.+...+. ++..|+ |-+-.+...|..
T Consensus 36 ~l~~tlwG-~~A~~f~~~~~~~~~~~~VVav~~~~rV~~~~g 76 (106)
T cd04481 36 RLKCTLWG-EYAEEFDAKFQSAGNGEPVVAVLRFWKIKEYKG 76 (106)
T ss_pred EEEEEEEH-HHHHHHHHHHHHhCCCCcEEEEEEeEEEEEEcC
Confidence 68999999 79998877763 555555 445588888864
No 77
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=46.95 E-value=1e+02 Score=21.83 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=26.9
Q ss_pred HhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 152 v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
..+.+..|+.|.|+|.+..+.-.. .+.. ...||.++ .|++|
T Consensus 44 ~~~~l~~~s~V~V~G~v~~~~~~~--~~~~-~~~Ei~~~---~i~il 84 (86)
T cd04321 44 LLKSITAESPVQVRGKLQLKEAKS--SEKN-DEWELVVD---DIQTL 84 (86)
T ss_pred HHhcCCCCcEEEEEEEEEeCCCcC--CCCC-CCEEEEEE---EEEEe
Confidence 335699999999999998754221 1111 23688887 66665
No 78
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=43.29 E-value=52 Score=23.98 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=25.4
Q ss_pred hhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 153 ~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
.+.|..|+.|.|+|.+....- .. ++......||.++ +|.+|
T Consensus 49 ~~~l~~es~V~V~G~v~~~~~-~~-~~~~~~~~El~~~---~i~il 89 (102)
T cd04320 49 AGSLSKESIVDVEGTVKKPEE-PI-KSCTQQDVELHIE---KIYVV 89 (102)
T ss_pred HhcCCCccEEEEEEEEECCCC-cc-cCCCcCcEEEEEE---EEEEE
Confidence 356999999999999976421 11 1211234677777 55443
No 79
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=42.92 E-value=41 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=23.5
Q ss_pred eEEEEEEeCcchHHHHhhcCCCCCEEEEE
Q 029088 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVE 165 (199)
Q Consensus 137 ~w~~V~~~g~~lAe~v~~~L~KG~~V~Ve 165 (199)
--+.|++|. ..|+.+.+ |+.||.|.+.
T Consensus 60 ~ti~It~yD-~H~~~ar~-lK~GdfV~L~ 86 (123)
T cd04498 60 LTIDILVYD-NHVELAKS-LKPGDFVRIY 86 (123)
T ss_pred EEEEEEEEc-chHHHHhh-CCCCCEEEEE
Confidence 568999995 79998887 9999999886
No 80
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=42.51 E-value=2.1e+02 Score=28.00 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=41.1
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..+++.|.|..... ....+...+.+.+... . +.-+.++.|+ . .++.+.+++|+.
T Consensus 33 ~~~~~~~~v~~~~~--~~~~~~~~~~~~~~d~-----~----------------~~~~~~~~F~-~--~~~~~~~~~g~~ 86 (630)
T TIGR00643 33 ERATIVGEVLSHCI--FGFKRRKVLKLRLKDG-----G----------------YKKLELRFFN-R--AFLKKKFKVGSK 86 (630)
T ss_pred CEEEEEEEEEEeEe--ccCCCCceEEEEEEEC-----C----------------CCEEEEEEEC-C--HHHHhhCCCCCE
Confidence 57899999887321 1123344555554331 1 1135777785 2 278889999999
Q ss_pred EEEEEEeEe
Q 029088 162 IYVEGNLEQ 170 (199)
Q Consensus 162 V~VeGrL~~ 170 (199)
|+|.|.+..
T Consensus 87 ~~~~Gk~~~ 95 (630)
T TIGR00643 87 VVVYGKVKS 95 (630)
T ss_pred EEEEEEEEe
Confidence 999999975
No 81
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=40.25 E-value=45 Score=25.40 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=22.1
Q ss_pred ceeEEEEEEeCc-chHHHHhhcCCCCCEEEEEE
Q 029088 135 AVQWHRVSVYPE-RLGGVVMKHLVPGSTIYVEG 166 (199)
Q Consensus 135 ~t~w~~V~~~g~-~lAe~v~~~L~KG~~V~VeG 166 (199)
..-.+.+++++. ..|...+..++.||.|.|.|
T Consensus 80 ~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~g 112 (117)
T PF08021_consen 80 GELDIDFVLHGDEGPASRWARSARPGDRVGVTG 112 (117)
T ss_dssp -EEEEEEE--SS--HHHHHHHH--TT-EEEEEE
T ss_pred CEEEEEEEECCCCCchHHHHhhCCCCCEEEEeC
Confidence 466888999986 68888899999999999988
No 82
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=40.03 E-value=1.8e+02 Score=22.63 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=48.4
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
..|-++|-|..-...+.+.+....+.|+|.-.... ...-+.|.+|+ ..++.+-. +..||.
T Consensus 15 ~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~------------------~~~~l~v~~F~-~~~~~LP~-v~~GDV 74 (138)
T cd04497 15 GSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLA------------------NSDGLTVKLFR-PNEESLPI-VKVGDI 74 (138)
T ss_pred CeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCC------------------CCCcEEEEEEC-CChhhCCC-CCCCCE
Confidence 45558888877655444443345666666543220 12357899997 67777765 599999
Q ss_pred EEEEEEeEeeeeeCC
Q 029088 162 IYVEGNLEQKVFNDP 176 (199)
Q Consensus 162 V~VeGrL~~~~~~d~ 176 (199)
|++.+ ++...|.++
T Consensus 75 Ill~~-~kv~~~~g~ 88 (138)
T cd04497 75 ILLRR-VKIQSYNGK 88 (138)
T ss_pred EEEEE-EEEEEECCc
Confidence 99998 777778654
No 83
>PF12342 DUF3640: Protein of unknown function (DUF3640) ; InterPro: IPR022101 This entry defines the N-terminal domain of the polyprotein of GB virus C; its function is not known.
Probab=39.31 E-value=19 Score=20.89 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=12.4
Q ss_pred CchhhHHHHHHhhcCC
Q 029088 1 MAALTRRFYRSLLLNP 16 (199)
Q Consensus 1 ~~~~~~~~~r~~l~~~ 16 (199)
|..|.-||+|+|=-.+
T Consensus 1 mslLtnr~crrvdkdq 16 (26)
T PF12342_consen 1 MSLLTNRMCRRVDKDQ 16 (26)
T ss_pred ChHHHHHHHhhhcccc
Confidence 6788899999886554
No 84
>PRK10646 ADP-binding protein; Provisional
Probab=38.79 E-value=20 Score=29.07 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.0
Q ss_pred chHHHHhhcCCCCCEEEEEEEeE
Q 029088 147 RLGGVVMKHLVPGSTIYVEGNLE 169 (199)
Q Consensus 147 ~lAe~v~~~L~KG~~V~VeGrL~ 169 (199)
++|+.+.+.|++|+.|+++|.|-
T Consensus 16 ~l~~~la~~l~~g~vi~L~GdLG 38 (153)
T PRK10646 16 DLGARVAKACDGATVIYLYGDLG 38 (153)
T ss_pred HHHHHHHHhCCCCcEEEEECCCC
Confidence 68899999999999999999984
No 85
>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-B, RPA1 contains three other OB folds: DBD-A, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ functiona
Probab=38.21 E-value=1.5e+02 Score=21.32 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=25.6
Q ss_pred EEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEeeeee
Q 029088 138 WHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFN 174 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~~ 174 (199)
-+.|++|| ..|+.+.... |+.|.+.| ++...|.
T Consensus 40 ~i~vtLWg-~~a~~~~~~~--~~vv~~~~-~~i~~~~ 72 (101)
T cd04475 40 SVELTLWG-EQAELFDGSE--NPVIAIKG-VKVSEFN 72 (101)
T ss_pred EEEEEEEH-HHhhhcccCC--CCEEEEEe-eEEEecC
Confidence 57899998 7888777544 99999988 6666674
No 86
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=37.80 E-value=25 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.9
Q ss_pred chHHHHhhcCCCCCEEEEEEEeE
Q 029088 147 RLGGVVMKHLVPGSTIYVEGNLE 169 (199)
Q Consensus 147 ~lAe~v~~~L~KG~~V~VeGrL~ 169 (199)
.+|+.+.+.|.+|+.|+++|.|-
T Consensus 13 ~lg~~l~~~l~~g~Vv~L~GdLG 35 (149)
T COG0802 13 ALGERLAEALKAGDVVLLSGDLG 35 (149)
T ss_pred HHHHHHHhhCCCCCEEEEEcCCc
Confidence 57889999999999999999984
No 87
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=36.71 E-value=1.4e+02 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=28.3
Q ss_pred EEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEe
Q 029088 138 WHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQ 170 (199)
Q Consensus 138 w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~ 170 (199)
-+.|++|. +.-+.....|+.|..|+|+|+++.
T Consensus 985 ~~e~~ifp-~~~~~~~~~l~~~~~~~v~g~v~~ 1016 (1046)
T PRK05672 985 MVNVVVWP-GLWERQRREALGARLLLVRGRVQN 1016 (1046)
T ss_pred CEEEEECH-HHHHHHHHHhccCCEEEEEEEEEe
Confidence 47899997 788888888999999999999965
No 88
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=36.48 E-value=1.1e+02 Score=21.38 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=30.6
Q ss_pred EEEEEeCcchHH--HHhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 139 HRVSVYPERLGG--VVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 139 ~~V~~~g~~lAe--~v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
..|++-. +... ...+.|..|+.|.|+|.+....-.. ......||.++ +|..|
T Consensus 29 iQ~v~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~----~~~~~~Ei~~~---~i~vl 82 (84)
T cd04323 29 LQCVLSK-KLVTEFYDAKSLTQESSVEVTGEVKEDPRAK----QAPGGYELQVD---YLEII 82 (84)
T ss_pred EEEEEcC-CcchhHHHHhcCCCcCEEEEEEEEEECCccc----CCCCCEEEEEE---EEEEE
Confidence 5565543 2221 2335699999999999998754220 00113688887 56554
No 89
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=36.22 E-value=75 Score=22.24 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=26.6
Q ss_pred HhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 152 v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
..+.|..|+.|.|+|.+....-.. + .....||.++ .|.+|
T Consensus 44 ~~~~l~~~s~V~v~G~~~~~~~~~---~-~~~~~El~~~---~i~il 83 (85)
T cd04100 44 EAEKLRTESVVGVTGTVVKRPEGN---L-ATGEIELQAE---ELEVL 83 (85)
T ss_pred HHhCCCCCCEEEEEeEEEECCCCC---C-CCCCEEEEEe---EEEEE
Confidence 446799999999999998755211 0 1123677777 66554
No 90
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=36.18 E-value=15 Score=28.75 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.3
Q ss_pred chHHHHhhcCCCCCEEEEEEEe
Q 029088 147 RLGGVVMKHLVPGSTIYVEGNL 168 (199)
Q Consensus 147 ~lAe~v~~~L~KG~~V~VeGrL 168 (199)
++|+.+.+.|++|+.|++.|.|
T Consensus 3 ~la~~l~~~l~~g~vi~L~GdL 24 (123)
T PF02367_consen 3 RLAKKLAQILKPGDVILLSGDL 24 (123)
T ss_dssp HHHHHHHHHHSS-EEEEEEEST
T ss_pred HHHHHHHHhCCCCCEEEEECCC
Confidence 5889999999999999999987
No 91
>PRK07218 replication factor A; Provisional
Probab=34.95 E-value=4e+02 Score=25.20 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=41.3
Q ss_pred cCccCceEEEEEEeCCCCeEEEe--CCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKL--KSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~--~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
+.++.+.|.+.|+|-+-.. |.+ ++|... ..+. ...| .|--+++++|+ .++
T Consensus 168 L~~g~~~V~v~g~Vl~~~~-r~f~~~dg~~~-v~~g----iigD----------------eTG~Ir~tlW~-~~~----- 219 (423)
T PRK07218 168 LGPGDRGVNVEARVLELEH-REIDGRDGETT-ILSG----VLAD----------------ETGRLPFTDWD-PLP----- 219 (423)
T ss_pred ccCCCCceEEEEEEEEecc-eeEEcCCCCeE-EEEE----EEEC----------------CCceEEEEEec-ccc-----
Confidence 4567788999999987532 443 345322 1111 2211 23368999998 454
Q ss_pred cCCCCCEEEEEEEeEe
Q 029088 155 HLVPGSTIYVEGNLEQ 170 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~ 170 (199)
-+.+|+.|.|.+-...
T Consensus 220 ~l~~Gd~v~I~na~v~ 235 (423)
T PRK07218 220 EIEIGASIRIEDAYVR 235 (423)
T ss_pred cCCCCCEEEEeeeEEe
Confidence 3899999999985443
No 92
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=34.13 E-value=98 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.5
Q ss_pred eeEEEEEEe--CcchHHHHhhcCCCCCEEEEEEEeEe
Q 029088 136 VQWHRVSVY--PERLGGVVMKHLVPGSTIYVEGNLEQ 170 (199)
Q Consensus 136 t~w~~V~~~--g~~lAe~v~~~L~KG~~V~VeGrL~~ 170 (199)
.--+-|..+ | ....++ ..|++||.|.|.|-+-.
T Consensus 62 ~~~~~ik~~~~G-~~S~~L-~~l~~Gd~v~i~gP~G~ 96 (99)
T PF00970_consen 62 YLEFAIKRYPNG-RVSRYL-HQLKPGDEVEIRGPYGN 96 (99)
T ss_dssp EEEEEEEECTTS-HHHHHH-HTSCTTSEEEEEEEESS
T ss_pred cEEEEEEeccCC-HHHHHH-HhCCCCCEEEEEEcccc
Confidence 345566666 4 466677 55999999999996543
No 93
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=33.40 E-value=1.2e+02 Score=22.41 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=22.7
Q ss_pred EEEEEEeCcchH-H--HHhhcCCCCCEEEEEEEeEeee
Q 029088 138 WHRVSVYPERLG-G--VVMKHLVPGSTIYVEGNLEQKV 172 (199)
Q Consensus 138 w~~V~~~g~~lA-e--~v~~~L~KG~~V~VeGrL~~~~ 172 (199)
.+.|++-..... + ...+.|..|+.|.|+|.+....
T Consensus 41 ~iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~ 78 (108)
T cd04316 41 IVQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEP 78 (108)
T ss_pred eEEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCC
Confidence 366666532111 1 2335699999999999988754
No 94
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=33.09 E-value=1.7e+02 Score=20.27 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=22.6
Q ss_pred HhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE
Q 029088 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190 (199)
Q Consensus 152 v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~ 190 (199)
..+.+..|+.|.|+|.+....-. .| ..||.+.
T Consensus 44 ~~~~l~~gs~V~v~G~v~~~~~~---~~----~~El~~~ 75 (82)
T cd04318 44 EILKLSTGSSIRVEGVLVKSPGA---KQ----PFELQAE 75 (82)
T ss_pred HHhcCCCceEEEEEEEEEeCCCC---CC----CEEEEEE
Confidence 44579999999999998765411 12 4677776
No 95
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=32.94 E-value=1.6e+02 Score=22.54 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=22.1
Q ss_pred EEEEEeCcchHH--HHhhcCCCCCEEEEEEEeEeee
Q 029088 139 HRVSVYPERLGG--VVMKHLVPGSTIYVEGNLEQKV 172 (199)
Q Consensus 139 ~~V~~~g~~lAe--~v~~~L~KG~~V~VeGrL~~~~ 172 (199)
..|++-. +... ...+.|..|+.|.|+|.+....
T Consensus 44 ~Q~v~~~-~~~~~~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 44 VQVVFDP-EEAPEFELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred EEEEEeC-CchhHHHHHhCCCCccEEEEEEEEECCC
Confidence 5565543 2222 2445799999999999988643
No 96
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=32.22 E-value=86 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=23.2
Q ss_pred eCcchHHHHhhcCCCCCEEEEEEEeEeeeeeCCCCCeEE
Q 029088 144 YPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVR 182 (199)
Q Consensus 144 ~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r 182 (199)
.+-.+|..+- -|+|||.|.+.|+-+ |..+ .|..+
T Consensus 75 hNIDlaprip-~l~~GD~V~f~GeYe---~n~k-ggvIH 108 (131)
T PF11948_consen 75 HNIDLAPRIP-WLQKGDQVEFYGEYE---WNPK-GGVIH 108 (131)
T ss_pred eccCccccCc-CcCCCCEEEEEEEEE---ECCC-CCEEE
Confidence 4445666665 499999999999984 4444 44433
No 97
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=31.85 E-value=1.1e+02 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHhhcCCCCCEEEEEEEeEee
Q 029088 150 GVVMKHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 150 e~v~~~L~KG~~V~VeGrL~~~ 171 (199)
+...++|+|||.|+-.|=|.-.
T Consensus 38 ~~ml~sL~kGD~VvT~gGi~G~ 59 (97)
T COG1862 38 QELLNSLKKGDEVVTIGGIVGT 59 (97)
T ss_pred HHHHHhccCCCEEEEcCCeEEE
Confidence 4577889999999988866443
No 98
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=30.99 E-value=1.4e+02 Score=21.79 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=21.6
Q ss_pred hcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE
Q 029088 154 KHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190 (199)
Q Consensus 154 ~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~ 190 (199)
+.|..|+.|.|+|.+..+.- .+ . ..||.++
T Consensus 46 ~~l~~~s~v~V~G~v~~~~~-~~-~-----~~Ei~~~ 75 (103)
T cd04319 46 KKVGIESSVIVEGAVKADPR-AP-G-----GAEVHGE 75 (103)
T ss_pred hCCCCCCEEEEEEEEEECCC-CC-C-----CEEEEEE
Confidence 46899999999999987531 11 2 3677777
No 99
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=29.51 E-value=72 Score=23.34 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.9
Q ss_pred HhhcCCCCCEEEEEEEeEee
Q 029088 152 VMKHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 152 v~~~L~KG~~V~VeGrL~~~ 171 (199)
....+..|+.|-|.|+++.-
T Consensus 59 ~~~~i~~G~vvrV~G~i~~f 78 (92)
T cd04483 59 QAKVLEIGDLLRVRGSIRTY 78 (92)
T ss_pred cccccCCCCEEEEEEEEecc
Confidence 45569999999999999875
No 100
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=29.22 E-value=1.9e+02 Score=31.26 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=54.4
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCc-chHHHHhhcCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLV 157 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~-~lAe~v~~~L~ 157 (199)
..+++|.+.|.|=. -+.+++.+|+..+.|.|.-- ++-..|..|-+ .--....+.++
T Consensus 237 ~~~~~v~v~G~IF~-~e~~~~ksGr~l~~i~vTD~----------------------t~Sl~~k~f~~~~ed~~~~~~ik 293 (1444)
T COG2176 237 EEETRVKVEGYIFK-IEIKELKSGRTLLNIKVTDY----------------------TSSLILKKFLRDEEDEKKFDGIK 293 (1444)
T ss_pred ccccceEEEEEEEE-EeeeecccCcEEEEEEEecC----------------------chheeehhhccccccHHHHhhcc
Confidence 45788999999987 88899999998888876431 11344444541 12234556799
Q ss_pred CCCEEEEEEEeEeeeeeC
Q 029088 158 PGSTIYVEGNLEQKVFND 175 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d 175 (199)
+|+-|-|.|.++...+..
T Consensus 294 ~g~wvk~~g~v~~d~f~~ 311 (1444)
T COG2176 294 KGMWVKARGNVQLDTFTR 311 (1444)
T ss_pred cCcEEEEEEEEEeccccc
Confidence 999999999999998875
No 101
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=29.00 E-value=1.7e+02 Score=21.41 Aligned_cols=18 Identities=33% Similarity=0.231 Sum_probs=15.2
Q ss_pred hcCCCCCEEEEEEEeEee
Q 029088 154 KHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 154 ~~L~KG~~V~VeGrL~~~ 171 (199)
+.|..|+.|.|+|.+...
T Consensus 48 ~~l~~g~~V~v~G~v~~~ 65 (108)
T cd04322 48 KLLDLGDIIGVTGTPFKT 65 (108)
T ss_pred hcCCCCCEEEEEEEEEec
Confidence 349999999999998754
No 102
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=26.88 E-value=46 Score=26.24 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.6
Q ss_pred chHHHHhhcCCCCCEEEEEEEeE
Q 029088 147 RLGGVVMKHLVPGSTIYVEGNLE 169 (199)
Q Consensus 147 ~lAe~v~~~L~KG~~V~VeGrL~ 169 (199)
++|+.+.+.|++|+.|++.|.+-
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lG 32 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLG 32 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCC
Confidence 68889999999999999999874
No 103
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=26.86 E-value=2.5e+02 Score=29.99 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=48.5
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
.+++.|-|..-...+..++|..++.+++.-.. . -++|++|. ...+.....+..|..+
T Consensus 978 ~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~--------------------g--~~e~v~f~-~~~~~~~~~l~~~~~~ 1034 (1139)
T COG0587 978 RVVLAGGIVAVRQRPTKAKGNKMAFLTLEDET--------------------G--ILEVVVFP-SEYERYRRLLLEGRLL 1034 (1139)
T ss_pred eeEEEEEEEEEEEeeccCCCCEEEEEEEecCC--------------------C--cEEEEEcH-HHHHHHHHHhccCcEE
Confidence 46777777775544444467767766654321 1 46899996 7888888899999999
Q ss_pred EEEEEeEeee
Q 029088 163 YVEGNLEQKV 172 (199)
Q Consensus 163 ~VeGrL~~~~ 172 (199)
+|.|.++...
T Consensus 1035 ~v~g~v~~~~ 1044 (1139)
T COG0587 1035 IVKGKVQRRE 1044 (1139)
T ss_pred EEEEEEEecc
Confidence 9999998854
No 104
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=26.61 E-value=76 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=23.8
Q ss_pred EEEEEeCcchHH---HHhhcCCCCCEEEEEEEeEee
Q 029088 139 HRVSVYPERLGG---VVMKHLVPGSTIYVEGNLEQK 171 (199)
Q Consensus 139 ~~V~~~g~~lAe---~v~~~L~KG~~V~VeGrL~~~ 171 (199)
+.+.+|. ...+ ...+.+..|+.|.|.|+++..
T Consensus 29 I~~~~W~-~~~~~~~~~~~~~~~g~~v~v~G~v~~~ 63 (95)
T cd04478 29 IEVRQWL-DDDNDDSSEVEPIEEGTYVRVFGNLKSF 63 (95)
T ss_pred EEEEEeC-CCCCcccccccccccCCEEEEEEEEccc
Confidence 6777785 2222 357789999999999999654
No 105
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=26.29 E-value=3e+02 Score=21.08 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE-eCCcEE
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR-RNGTYL 196 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~-~~g~l~ 196 (199)
+..||.|.+++++.......+ .+......++.+. ..|+++
T Consensus 89 V~~GDtl~~~~~V~~~~~~~~-~~~~~v~~~~~~~nq~g~~V 129 (142)
T cd03452 89 VYPGDTIQVRLTCKRKIPRDG-QDYGVVRWDAEVTNQNGELV 129 (142)
T ss_pred CCCCCEEEEEEEEEEEeecCC-CCcEEEEEEEEEEecCCCEE
Confidence 677999999999876554332 2323333444443 466654
No 106
>smart00350 MCM minichromosome maintenance proteins.
Probab=25.86 E-value=2.1e+02 Score=27.25 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=27.5
Q ss_pred ceeEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEeeee
Q 029088 135 AVQWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVF 173 (199)
Q Consensus 135 ~t~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~ 173 (199)
-+..+.|.+.+ .+ .+.+++||.|.|.|-++.+.|
T Consensus 102 ~Prsi~v~l~~-dL----vd~~~PGD~V~i~Gi~~~~~~ 135 (509)
T smart00350 102 LPRSVDVILDG-DL----VDKAKPGDRVEVTGIYRNIPY 135 (509)
T ss_pred CCcEEEEEEcc-cc----cCcccCCCEEEEEEEEEeecc
Confidence 45678898887 34 457899999999999998765
No 107
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=25.78 E-value=42 Score=26.98 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.0
Q ss_pred EeCcchHHHHhhcCCCCCEEEEEE
Q 029088 143 VYPERLGGVVMKHLVPGSTIYVEG 166 (199)
Q Consensus 143 ~~g~~lAe~v~~~L~KG~~V~VeG 166 (199)
+.| ++|..+++.|..||.|+|.-
T Consensus 9 vlG-RLAs~IA~~L~~Gd~VvViN 31 (142)
T TIGR01077 9 ILG-RLASVVAKQLLNGEKVVVVN 31 (142)
T ss_pred chH-HHHHHHHHHHhcCCEEEEEe
Confidence 346 79999999999999999865
No 108
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=24.20 E-value=2.9e+02 Score=22.48 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEe
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLI 197 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~f 197 (199)
+...|.|.|.|++..-... -......++|.... +|.+.+
T Consensus 138 ~~~~V~V~G~l~t~~g~~~-~~~~~~~y~~~~~~~~g~~~L 177 (187)
T PF05309_consen 138 ETLTVFVTGTLKTWIGDKK-VSSEDKTYRLQFKYRNGRLWL 177 (187)
T ss_pred CCCEEEEEEEEEEEECCcc-ccceeEEEEEEEEEeCCEEEE
Confidence 5688999999887654433 23345566777775 787765
No 109
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=23.60 E-value=47 Score=26.84 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.3
Q ss_pred EeCcchHHHHhhcCCCCCEEEEEEE
Q 029088 143 VYPERLGGVVMKHLVPGSTIYVEGN 167 (199)
Q Consensus 143 ~~g~~lAe~v~~~L~KG~~V~VeGr 167 (199)
+.| ++|..+++.|.-||.|+|.--
T Consensus 13 vlG-RLAs~IA~~L~~Gd~VVViNa 36 (146)
T PRK06394 13 ILG-RLASYVAKRLLEGEEVVIVNA 36 (146)
T ss_pred chH-HHHHHHHHHHhCCCEEEEEec
Confidence 346 799999999999999998653
No 110
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=23.05 E-value=2.5e+02 Score=23.40 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=10.2
Q ss_pred HHHhhcCCCCCEEEEE
Q 029088 150 GVVMKHLVPGSTIYVE 165 (199)
Q Consensus 150 e~v~~~L~KG~~V~Ve 165 (199)
+.++++|.+|++++|+
T Consensus 70 ~~~~~~l~pg~~lfVe 85 (170)
T PF06557_consen 70 KLFSRYLEPGGRLFVE 85 (170)
T ss_dssp HHHHTT----SEEEEE
T ss_pred HHHHHHhhhcCeEEEE
Confidence 4588899999999997
No 111
>PF10574 UPF0552: Uncharacterised protein family UPF0552; InterPro: IPR018889 This family of proteins has no known function.
Probab=22.52 E-value=2.3e+02 Score=24.61 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred cCCCCCEEEEEEEeEe---eeeeCCCCCeEEEEEEEEEE
Q 029088 155 HLVPGSTIYVEGNLEQ---KVFNDPITGLVRRIREIAIR 190 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~---~~~~d~~dG~~r~~~eI~v~ 190 (199)
.++.|+-|+|||.|.. ..-.|. .|++.+.+-|.++
T Consensus 28 ~~q~G~GvilEG~l~~~sRH~I~D~-~~~k~Ry~vl~i~ 65 (224)
T PF10574_consen 28 AHQSGDGVILEGELVDVSRHSITDA-SGQKERYYVLYIR 65 (224)
T ss_pred HhcCCCeEEEEEEEEeeeEEEEEcC-CCCceEEEEEEEe
Confidence 3889999999999954 234465 6776544444444
No 112
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=22.13 E-value=3.4e+02 Score=20.20 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=23.1
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE-eCCcEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR-RNGTYL 196 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~-~~g~l~ 196 (199)
-+..||.|.++.++........ .+...-..++.+. ++|+++
T Consensus 90 pv~~GD~l~~~~~v~~~~~~~~-~~~~~v~~~~~~~nq~g~~v 131 (140)
T cd03446 90 PVFIGDTIRAEAEVVEKEEKDG-EDAGVVTRRIEVVNQRGEVV 131 (140)
T ss_pred CCCCCCEEEEEEEEEEecccCC-CCceEEEEEEEEEcCCCCEE
Confidence 4778999999998875533221 1222334444443 366654
No 113
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=20.53 E-value=3.7e+02 Score=20.10 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=26.3
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE-eCCcEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR-RNGTYL 196 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~-~~g~l~ 196 (199)
-+..||.|.+++.+..........|.....+++.+. ..|+++
T Consensus 88 pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v 130 (140)
T cd03454 88 PVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVV 130 (140)
T ss_pred CCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEE
Confidence 478899999999987766532212433444555554 467654
No 114
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=20.05 E-value=1.2e+02 Score=30.53 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.7
Q ss_pred HhhcCCCCCEEEEEEEeEeeeeeCCCCCeE--EEEEEEEEE
Q 029088 152 VMKHLVPGSTIYVEGNLEQKVFNDPITGLV--RRIREIAIR 190 (199)
Q Consensus 152 v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~--r~~~eI~v~ 190 (199)
+.+.+++||+|-|.|..+.--.+. +|.. ...+-|+++
T Consensus 223 LVD~~KPGDRV~ivG~yr~Lp~k~--~g~tsg~FRTvliaN 261 (818)
T KOG0479|consen 223 LVDRVKPGDRVNIVGIYRSLPGKS--NGNTSGTFRTVLIAN 261 (818)
T ss_pred ccccCCCCCeeEEEEEEeeccCcc--CCcccceeEEEEEec
Confidence 677899999999999988876643 6765 456667776
Done!