Query 029088
Match_columns 199
No_of_seqs 125 out of 1228
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulp_A Single-strand binding p 100.0 2.3E-30 7.9E-35 200.6 13.7 112 79-198 4-117 (124)
2 3ull_A DNA binding protein; DN 100.0 4.5E-30 1.5E-34 201.1 12.5 116 76-198 9-124 (132)
3 3pgz_A Single-stranded DNA-bin 100.0 9.4E-30 3.2E-34 211.6 14.6 114 77-199 22-136 (193)
4 3tqy_A Single-stranded DNA-bin 100.0 2E-29 7E-34 203.4 15.4 109 77-198 4-112 (158)
5 3lgj_A Single-stranded DNA-bin 100.0 1.3E-29 4.3E-34 206.9 12.9 114 75-198 17-132 (169)
6 3vdy_A SSB, single-stranded DN 100.0 5.2E-29 1.8E-33 190.7 14.8 104 79-198 3-106 (116)
7 3k7u_C MP18 RNA editing comple 100.0 1.6E-29 5.5E-34 202.4 11.3 111 76-198 1-114 (148)
8 3koj_A Uncharacterized protein 100.0 3.8E-29 1.3E-33 190.7 11.8 96 79-191 9-105 (108)
9 1qvc_A Single stranded DNA bin 100.0 1.1E-28 3.8E-33 196.3 14.4 108 78-198 2-112 (145)
10 2vw9_A Single-stranded DNA bin 100.0 1.6E-28 5.5E-33 193.1 15.1 105 80-198 1-105 (134)
11 4dam_A Single-stranded DNA-bin 100.0 8.4E-29 2.9E-33 193.7 12.9 102 79-191 13-114 (128)
12 3afp_A Single-stranded DNA-bin 100.0 8.7E-29 3E-33 201.5 13.3 112 78-198 1-113 (168)
13 1z9f_A Single-strand binding p 100.0 8.2E-29 2.8E-33 199.1 12.4 108 76-198 11-119 (153)
14 1eqq_A Single stranded DNA bin 100.0 1.6E-28 5.5E-33 201.8 9.4 110 79-198 4-113 (178)
15 3eiv_A Single-stranded DNA-bin 99.9 5.4E-27 1.9E-31 195.8 13.7 105 78-191 1-105 (199)
16 3k81_C MP18 RNA editing comple 99.9 1.8E-27 6.1E-32 193.2 9.9 110 77-198 18-130 (164)
17 1se8_A Single-strand binding p 99.9 8.6E-26 2.9E-30 198.7 14.3 108 77-198 1-109 (301)
18 4dni_A Fusion protein of RNA-e 99.9 2E-25 6.8E-30 192.7 13.8 109 78-199 143-255 (257)
19 2fxq_A Single-strand binding p 99.9 3.2E-25 1.1E-29 191.0 14.8 104 77-198 124-227 (264)
20 2fxq_A Single-strand binding p 99.9 1.9E-25 6.5E-30 192.5 12.3 107 77-198 1-107 (264)
21 4gs3_A Single-stranded DNA-bin 99.9 2.3E-25 7.9E-30 169.6 11.1 94 82-199 12-106 (107)
22 1v1q_A Primosomal replication 99.9 2.2E-25 7.7E-30 175.7 11.4 101 79-198 17-117 (134)
23 1se8_A Single-strand binding p 99.9 8.3E-25 2.8E-29 192.5 13.8 107 77-198 125-231 (301)
24 1txy_A Primosomal replication 99.9 4.5E-25 1.5E-29 166.3 10.2 100 80-198 1-100 (104)
25 3fhw_A Primosomal replication 99.9 5.7E-23 2E-27 158.2 11.4 96 81-198 1-96 (115)
26 3k8a_A Putative primosomal rep 99.9 6.9E-23 2.4E-27 154.8 10.3 82 80-174 6-87 (103)
27 3en2_A Probable primosomal rep 99.8 7.3E-21 2.5E-25 143.3 9.3 85 80-176 1-85 (101)
28 3stb_C RNA-editing complex pro 99.8 4.2E-20 1.4E-24 147.4 13.1 96 79-189 42-137 (148)
29 4dni_A Fusion protein of RNA-e 99.8 7.5E-20 2.6E-24 157.9 10.1 101 73-191 23-123 (257)
30 4dka_C RNA-editing complex pro 97.1 0.0053 1.8E-07 45.9 10.3 87 83-190 5-95 (105)
31 3e0e_A Replication protein A; 95.2 0.12 4.2E-06 37.2 8.6 84 77-197 8-95 (97)
32 2k75_A Uncharacterized protein 94.2 0.95 3.3E-05 33.0 11.4 82 77-198 9-93 (106)
33 3dm3_A Replication factor A; p 94.0 0.31 1.1E-05 35.8 8.4 86 77-196 11-98 (105)
34 2k50_A Replication factor A re 93.9 0.48 1.6E-05 34.5 9.3 69 82-174 17-89 (115)
35 1ynx_A Replication factor-A pr 93.9 0.18 6.2E-06 37.3 6.9 70 76-166 9-79 (114)
36 2hql_A Hypothetical protein Mg 93.9 1.3 4.6E-05 32.3 11.9 89 79-188 6-94 (110)
37 1o7i_A SSB, SSO2364, single st 93.7 1.2 4.2E-05 32.8 11.4 84 77-197 8-95 (119)
38 3f2b_A DNA-directed DNA polyme 84.8 4.2 0.00014 41.0 9.8 74 79-175 15-89 (1041)
39 1jmc_A Protein (replication pr 84.7 2.5 8.6E-05 34.4 7.0 70 76-166 13-83 (246)
40 4gop_C Putative uncharacterize 80.4 5.5 0.00019 35.6 8.0 68 76-166 8-78 (444)
41 1wjj_A Hypothetical protein F2 75.7 25 0.00087 27.1 11.5 85 77-197 22-119 (145)
42 3au7_A TIAS, putative uncharac 75.2 15 0.00053 33.0 9.3 66 79-170 282-348 (402)
43 2vl6_A SSO MCM N-TER, minichro 65.1 22 0.00074 29.5 7.6 49 137-190 211-260 (268)
44 4gop_B Putative uncharacterize 63.5 30 0.001 25.6 7.5 63 79-170 34-99 (136)
45 2hbp_A Cytoskeleton assembly c 62.9 7.4 0.00025 26.7 3.5 32 166-198 1-32 (68)
46 2hpi_A DNA polymerase III alph 51.4 23 0.00077 36.3 6.2 64 83-170 1044-1107(1220)
47 3kdf_D Replication protein A 3 48.5 62 0.0021 23.8 6.9 64 79-170 29-94 (132)
48 4hik_A Protection of telomeres 45.4 16 0.00055 28.2 3.2 74 82-164 15-91 (143)
49 2kbn_A Conserved protein; nucl 44.7 83 0.0028 22.4 11.9 82 77-197 11-93 (109)
50 1ltl_A DNA replication initiat 38.6 65 0.0022 26.8 6.3 45 137-190 198-242 (279)
51 3f14_A Uncharacterized NTF2-li 38.5 91 0.0031 21.4 6.3 37 156-196 67-105 (112)
52 3exz_A MAOC-like dehydratase; 34.8 1.4E+02 0.0047 22.1 7.2 42 155-196 91-133 (154)
53 3ebt_A Uncharacterized NTF2-li 31.8 1.2E+02 0.0041 20.8 6.0 36 157-197 78-116 (132)
54 3ebe_A Protein MCM10 homolog; 27.6 53 0.0018 26.6 3.7 72 83-179 57-128 (200)
55 2gnc_A SLIT-ROBO RHO GTPase-ac 25.4 65 0.0022 19.9 3.2 27 155-181 24-50 (60)
56 2bzy_A CRK-like protein, CRKL 24.9 52 0.0018 20.9 2.7 29 155-183 21-49 (67)
57 2k50_A Replication factor A re 24.1 1.8E+02 0.0062 20.3 5.8 42 155-197 12-58 (115)
58 1jmc_A Protein (replication pr 23.2 2.3E+02 0.0079 22.4 6.9 69 82-173 139-210 (246)
59 1o7i_A SSB, SSO2364, single st 22.9 2.1E+02 0.0071 20.4 6.7 13 156-168 8-21 (119)
60 1zx6_A YPR154WP; SH3 domain, p 22.0 66 0.0023 19.6 2.7 27 155-181 20-46 (58)
61 1k4u_S Phagocyte NADPH oxidase 21.6 59 0.002 20.2 2.4 27 155-181 23-49 (62)
62 2f41_A Transcription factor FA 21.1 2.1E+02 0.0071 20.0 5.6 37 155-196 72-108 (121)
63 3c0c_A Endophilin-A2; endocyto 21.0 68 0.0023 20.7 2.7 28 155-182 31-58 (73)
64 2ew3_A SH3-containing GRB2-lik 20.6 69 0.0024 20.6 2.6 28 155-182 21-48 (68)
No 1
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.97 E-value=2.3e-30 Score=200.64 Aligned_cols=112 Identities=29% Similarity=0.531 Sum_probs=99.3
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
++||+|+|+|+||+||+++++++|.++++|+||+++.|+++.+ | +|. ..++||+|++||+++|+.+.++|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~---G---~~~--~~t~~~~v~~wg~~~Ae~~~~~l~K 75 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNT---N---ELK--SKTDWHRIVVYDQNIVDLIDKYLRK 75 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTT---C---CEE--EEEEEEEEEECCHHHHHHHHHHCCT
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccC---C---cEe--cccEEEEEEEEEchHHHHHHhhcCC
Confidence 6899999999999999999999999999999999999987632 3 342 3799999999974699999999999
Q ss_pred CCEEEEEEEeEeeeeeCCC-CCeEEEEEEEEEEe-CCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPI-TGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~-dG~~r~~~eI~v~~-~g~l~fl 198 (199)
|++|+|+|+|+++.|+++. ||++++.++|+|+. +++|+||
T Consensus 76 G~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l 117 (124)
T 3ulp_A 76 GRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFL 117 (124)
T ss_dssp TCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEEC
T ss_pred CCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEe
Confidence 9999999999999999864 79999999999996 6799998
No 2
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.97 E-value=4.5e-30 Score=201.13 Aligned_cols=116 Identities=27% Similarity=0.473 Sum_probs=98.6
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhc
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKH 155 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~ 155 (199)
-|.++||+|+|+||||+||+++++++|.++++|+||+++.|+++.+ +..+.++|. ..++||+|++||+++|+.+.++
T Consensus 9 ~m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g-~~~~~g~~~--~~t~w~~v~~wg~~~Ae~~~~~ 85 (132)
T 3ull_A 9 VLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDS-EVYQLGDVS--QKTTWHRISVFRPGLRDVAYQY 85 (132)
T ss_dssp -CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC----------CCE--EEEEEEEEEECSTTHHHHHHHH
T ss_pred hhhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceecccc-ccccCCcee--cceEEEEEEEEchHHHHHHHhh
Confidence 3567899999999999999999999999999999999999976421 000112442 3899999999984499999999
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|+||++|+|+|+|+++.|+++ ||++++.++|+|+ .|+||
T Consensus 86 l~KG~~V~V~G~L~~~~~~d~-dG~~r~~~ev~a~---~i~~l 124 (132)
T 3ull_A 86 VKKGSRIYLEGKIDYGEYMDK-NNVRRQATTIIAD---NIIFL 124 (132)
T ss_dssp CCTTCEEEEEEEEECCCEESS-SSEECCCEEEEEE---EEECC
T ss_pred CCCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEc
Confidence 999999999999999999998 9999999999999 88887
No 3
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.97 E-value=9.4e-30 Score=211.58 Aligned_cols=114 Identities=29% Similarity=0.526 Sum_probs=100.0
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+++||+|+|+|||++||++|++++|.+|++|+||+++.|+++. ++ +|. +.++||+|++|++++|+.+.++|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~---~G---e~~--e~Tdwi~Vvawgk~lAe~~~~yL 93 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRN---TN---ERK--ERTEWHNIVIFNENLVKVVEQYL 93 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----------E--EEEEEEEEEECCHHHHHHHHHHC
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccC---CC---cee--eeeEEEEEEEECHHHHHHHHhhc
Confidence 55689999999999999999999999999999999999998653 23 342 37999999999834999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEecC
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIFF 199 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl~ 199 (199)
+||++|+|+|+|+++.|+++ ||++++.+||+|+. +++|+||-
T Consensus 94 ~KGs~V~VeGrL~trswedk-dG~kr~~tEVva~~~~~~i~fL~ 136 (193)
T 3pgz_A 94 KKGSKIYIEGQLQTRKWQDQ-NGNDRYTTEIVLQKYRGELQMLD 136 (193)
T ss_dssp CTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEECTTCCEEEECC
T ss_pred CCCCEEEEEEEEEEEEeECC-CCCEEEEEEEEEEeccCceEECc
Confidence 99999999999999999998 99999999999998 57899983
No 4
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.96 E-value=2e-29 Score=203.43 Aligned_cols=109 Identities=29% Similarity=0.545 Sum_probs=100.0
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+++||+|+|+|+|++||+++++++|..++.|+||+++.|+++. +| +|. +.++||+|++|| ++|+.+.++|
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~---~G---e~~--e~t~~i~vv~wg-~~Ae~~~~~l 74 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQ---TG---ELQ--ERTEWHRIAFFN-RLAEIVGEYL 74 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTT---TC---CEE--EEEEEEEEEEET-HHHHHHHHHC
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccC---CC---CEe--eeeEEEEEEEEh-HHHHHHHhhc
Confidence 66789999999999999999999999999999999999998652 23 442 379999999998 8999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||
T Consensus 75 ~KG~~V~VeG~L~~~~~~dk-dG~~r~~~eV~a~---~i~~L 112 (158)
T 3tqy_A 75 RKGSKIYIEGSLRTRKWQDK-NGVDRYTTEIIAN---EMHML 112 (158)
T ss_dssp CTTCEEEEEEEEEEEEEECS-SSCEEEEEEEEEE---EEEEC
T ss_pred CCCCEEEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEc
Confidence 99999999999999999998 9999999999999 89887
No 5
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.96 E-value=1.3e-29 Score=206.85 Aligned_cols=114 Identities=26% Similarity=0.492 Sum_probs=87.3
Q ss_pred CCcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcc-hHHHHh
Q 029088 75 NGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPER-LGGVVM 153 (199)
Q Consensus 75 ~~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~-lAe~v~ 153 (199)
++.+.+||+|+|+||||+||++|++++|.++++|+||+++.|+++.+ | +|. ..++||+|++|| + +|+.+.
T Consensus 17 ~~~~~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~---G---e~~--~~t~~i~vv~wg-~~lAe~~~ 87 (169)
T 3lgj_A 17 QGPGSMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNT---H---QKV--EKTEWHSVVVFN-PHFAKIAL 87 (169)
T ss_dssp ---CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC--------------------CEEEEEEEECC-HHHHHHHH
T ss_pred CCcccceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccC---C---ccc--cccEEEEEEEeC-HHHHHHHH
Confidence 44467899999999999999999999999999999999999876532 3 342 379999999998 7 999999
Q ss_pred hcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 154 KHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 154 ~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
++|+||++|+|+|+|+++.|+++ +|++++.++|+|+. ..+|+||
T Consensus 88 ~~l~KG~~V~VeGrL~~r~~~dk-dG~~r~~~eIva~~~~~~i~~L 132 (169)
T 3lgj_A 88 QYLHKGSKVYIEGKLQTRKWQDK-NGHDRYTTEIVLPQYKGELHLL 132 (169)
T ss_dssp HHCCTTCEEEEEEEEEEECC---------CEEEEEECTTCCEEEEE
T ss_pred HhCCCCCEEEEEEEEEEEEEECC-CCCEEEEEEEEEEeccCcEEEc
Confidence 99999999999999999999998 99999999999985 6789998
No 6
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.96 E-value=5.2e-29 Score=190.70 Aligned_cols=104 Identities=14% Similarity=0.240 Sum_probs=92.7
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
.+||+|+|+|+|++||+++++++|.+++.|+||+++.|+++. |+ + .++||+|++|| ++|+.+.++|+|
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~----g~---~----~t~~~~v~~wg-~~Ae~~~~~l~K 70 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNAS----GE---I----EADYVNCTLWR-KTAENTALYCQK 70 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSS----SC---C----CEEEEEEEEEH-HHHHHHHHHCCT
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCC----Cc---c----ccEEEEEEEEC-HHHHHHHHhCCC
Confidence 579999999999999999999999999999999999887542 32 2 79999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++.|+++ ||++++.++|+|+ .|+||
T Consensus 71 G~~V~V~G~l~~~~~~d~-dG~~~~~~ev~a~---~i~~l 106 (116)
T 3vdy_A 71 GSLVGVSGRIQTRSYENE-EGVNVYVTEVLAD---TVRFM 106 (116)
T ss_dssp TCEEEEEEEEEEEEEC-----CCEEEEEEEEE---EEEEC
T ss_pred CCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEc
Confidence 999999999999999998 9999999999999 88887
No 7
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.96 E-value=1.6e-29 Score=202.43 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=85.8
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch-HHHHhh
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL-GGVVMK 154 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l-Ae~v~~ 154 (199)
+||++||+|+|+||||+||+ +++ +|..+++|+||+++.|+++. ++ +| ...++||+|++|| ++ |+.+.+
T Consensus 1 ~M~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~----Ge--~~--~~~t~w~~vv~wg-k~lAe~~~~ 69 (148)
T 3k7u_C 1 GMSKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHP----TQ--EV--VVEKDHHTIRCFG-ELFSAEVKQ 69 (148)
T ss_dssp ----CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-------------------CEEEEEEEEES-HHHHHHHHH
T ss_pred CCcccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCC----CC--EE--ccccEEEEEEEEC-cHHHHHHHh
Confidence 58899999999999999999 999 99999999999999987552 32 23 2389999999998 76 999999
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe--CCcEEec
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR--NGTYLIF 198 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~--~g~l~fl 198 (199)
||+||++|+|+|+|+++.|+|+ ||+++|.++|++-. .|.+++|
T Consensus 70 yl~KG~~V~VeGrL~~r~~~dk-dG~kr~~teVi~v~~~~g~~~ll 114 (148)
T 3k7u_C 70 KVKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVI 114 (148)
T ss_dssp HCCTTCEEEEEEEEEECCCSCC-C-----CCEEEEECTTTCEEEEE
T ss_pred hCCCCCEEEEEEEEEeeeeECC-CCCEEEEEEEEEEecCCCeEEEc
Confidence 9999999999999999999998 99999999998753 4788876
No 8
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=3.8e-29 Score=190.71 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCC-cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSG-RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G-~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
..||.|+|+|||++|||+|++++| .++++|+||++ .|+++ ..++||+|++|| ++|+.+.+||+
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~~~--------------~~t~fi~vv~wg-k~AE~~~~yl~ 72 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLSSK--------------DAPARLKVVGWG-AVAQELQDRCR 72 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C-------------------CCEEEEEEEET-HHHHHHHHHCC
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-CcccC--------------CCcEEEEEEEEh-HHHHHHHHhCC
Confidence 468999999999999999999998 99999999999 66432 168999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~ 191 (199)
||++|+|+|+|+++.|+++ ||++++.+||+|++
T Consensus 73 KG~~V~VeGrL~~r~y~~k-dG~kr~~tEVva~~ 105 (108)
T 3koj_A 73 LNDEVVLEGRLRINSLLKP-DGNREKQTELTVTR 105 (108)
T ss_dssp TTCEEEEEEEEEEEC---------CCEEEEEEEE
T ss_pred CCCEEEEEEEEEeeeEECC-CCCEEEEEEEEEEE
Confidence 9999999999999999998 99999999999993
No 9
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.96 E-value=1.1e-28 Score=196.31 Aligned_cols=108 Identities=30% Similarity=0.517 Sum_probs=97.3
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
+++||+|+|+|+|++||+++++++|.+++.|+||+++.|+++.. | +|. ..++||+|++|+ ++|+.+.++|+
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~---G---e~~--~~t~~~~v~~wg-~~Ae~~~~~l~ 72 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKAT---G---EMK--EQTEWHRVVLFG-KLAEVASEYLR 72 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSS---S---SCC--CCCEEEEEEEET-HHHHHHHHHCC
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccC---C---cEe--cccEEEEEEEeh-HHHHHHHHhcC
Confidence 46799999999999999999999999999999999999876532 3 342 379999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEE---EEEeCCcEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREI---AIRRNGTYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI---~v~~~g~l~fl 198 (199)
||++|+|+|+|+++.|+|+ ||++++.++| +|+ +|.||
T Consensus 73 KG~~V~V~G~L~~~~~~d~-dG~~r~~~ei~a~va~---~i~~l 112 (145)
T 1qvc_A 73 KGSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGG---TMQML 112 (145)
T ss_dssp TTCEEEEEEEEEEEEECSS-SSCEEEEEEEECTTCE---EEECC
T ss_pred CCCEEEEEEEEEeeEEECC-CCcEEEEEEEeeeEeC---EEEEc
Confidence 9999999999999999998 9999999999 666 88887
No 10
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.96 E-value=1.6e-28 Score=193.09 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=96.8
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
+||+|+|+|+|++||+++++++|.+++.|+||+++.|+++. | +|. ..++||+|++|| ++|+.+.++|+||
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~----G---~~~--~~t~~~~v~~wg-~~Ae~~~~~l~KG 70 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQD----G---TLG--EEVCFIDARLFG-RTAEIANQYLSKG 70 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSS----S---CEE--EEEEEEEEEEEH-HHHHHHHHHCCTT
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCC----C---CCc--cccEEEEEEEEc-HHHHHHHHhCCCC
Confidence 48999999999999999999999999999999999987652 3 342 379999999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++.|+++ +|++++.++|+|+ .|+||
T Consensus 71 ~~V~V~G~L~~~~~~dk-dG~~r~~~ev~a~---~i~~l 105 (134)
T 2vw9_A 71 SSVLIEGRLTYESWMDQ-TGKKNSRHTITAD---SLQFM 105 (134)
T ss_dssp CEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEEEC
T ss_pred CEEEEEEEEEeeeEECC-CCCEEEEEEEEEE---EEEEc
Confidence 99999999999999998 9999999999999 88887
No 11
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.96 E-value=8.4e-29 Score=193.74 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=93.0
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
..+|+|+|+||||+||+++++++| ++++|+||+++.|+++. +| +|.+. .++||+|++|| ++|+.+.++|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~---~G---e~~d~-~t~w~~v~~wg-~~Ae~~~~~l~K 83 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDRE---KN---AWTDG-HTNFFTVWANR-QLATNASGSLAV 83 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETT---TT---EEEEE-EEEEEEEEEEH-HHHHHHHHHCCT
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceeccc---CC---ceecC-CcEEEEEEEEc-HHHHHHHHhcCC
Confidence 568999999999999999999999 99999999999998653 23 56432 79999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~ 191 (199)
|++|+|+|+|+++.| ++ ||++++.++|+|+.
T Consensus 84 G~~V~VeGrL~~~~~-dk-dG~~r~~~ev~a~~ 114 (128)
T 4dam_A 84 GDPVVVQGRLKVRTD-VR-EGQSRTSADIDAVA 114 (128)
T ss_dssp TCEEEEEEEEEEEEE-EE-TTEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEeEE-cC-CCCEEEEEEEEEEE
Confidence 999999999999999 77 99999999999996
No 12
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.96 E-value=8.7e-29 Score=201.53 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=92.6
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|.+||+|+|+|||++||++|++++|..|++|+||++++|+++. ++ +|.+. .++||+|++|+ ++|+.+.++|+
T Consensus 1 Ma~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~---~G---e~~d~-~t~~~~v~~wg-~~Ae~~~~~l~ 72 (168)
T 3afp_A 1 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQ---SG---EWKDG-EALFLRCNIWR-EAAENVAESLT 72 (168)
T ss_dssp --CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------------CCCCC-CCEEEEEEEEH-HHHHHHHHHCC
T ss_pred CCccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcccccccc---CC---cEecC-CcEEEEEEEeh-HHHHHHHHhCC
Confidence 3479999999999999999999999999999999998887553 22 45332 69999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe-CCcEEec
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR-NGTYLIF 198 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~-~g~l~fl 198 (199)
||++|+|+|+|+++.|+++ +|++++.++|+|++ ...|.||
T Consensus 73 KG~~V~VeGrL~~~~~~dk-dG~~r~~~ev~a~~v~~~l~~l 113 (168)
T 3afp_A 73 RGARVIVTGRLKQRSFETR-EGEKRTVVEVEVDEIGPSLRYA 113 (168)
T ss_dssp TTCEEEEEEEEEEEEEC-C-CSCCEEEEEEEEEEEEECCSSE
T ss_pred CCCEEEEEEEEEeeeEECC-CCcEEEEEEEEEEEeecCEEEe
Confidence 9999999999999999998 99999999999995 5566665
No 13
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.96 E-value=8.2e-29 Score=199.09 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=84.4
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCC-eecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGG-IRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~-~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
+-|+.||+|+|+||||+||++|++++|..+++|+||+++ .|+++. | +| . .++||+|++|| ++|+.+.+
T Consensus 11 ~~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~----G---e~--~-~t~~~~v~~wg-~~Ae~~~~ 79 (153)
T 1z9f_A 11 HHMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAP----D---DA--Q-TTDFFRIVTFG-RLAEFART 79 (153)
T ss_dssp -CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------------CEEEEEEEEEH-HHHHHHHH
T ss_pred ccccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCC----C---CE--e-eeEEEEEEEEC-HHHHHHHh
Confidence 346999999999999999999999999999999999999 787542 3 23 1 39999999998 89999999
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||
T Consensus 80 ~l~KG~~V~VeGrL~~~~~~dk-dG~~r~~~eV~a~---~i~~l 119 (153)
T 1z9f_A 80 YLTKGRLVLVEGEMRMRRWETP-TGEKRVSPEVVAN---VVRFM 119 (153)
T ss_dssp HCCTTCEEEEEEEEEEEC--------CCCEEEEEEE---EEEEC
T ss_pred hCCCCCEEEEEEEEEeceEECC-CCCEEEEEEEEEE---EEEEc
Confidence 9999999999999999999988 9999999999999 88887
No 14
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.95 E-value=1.6e-28 Score=201.78 Aligned_cols=110 Identities=30% Similarity=0.549 Sum_probs=97.6
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
++||+|+|+|||++||++|++++|..|++|+||+++.|+++.+ | +|. ..++||+|++|| ++|+.+.++|+|
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~---G---e~~--~~t~~i~vv~wg-~~Ae~~~~~l~K 74 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKAT---G---EMK--EQTEWHRVVLFG-KLAEVASEYLRK 74 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSS---S---SCC--CEEEEEEEEECH-HHHHHHHHHCCT
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCC---C---cee--cccEEEEEEEcc-HHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999876532 3 342 379999999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++.|+++ +|++++.++|.|....+|+||
T Consensus 75 G~~V~VeGrL~~r~~~dk-dG~~r~~~eI~v~va~~i~~l 113 (178)
T 1eqq_A 75 GSQVYIEGQLRTRKWTDQ-SGQDRYTTEVVVNVGGTMQML 113 (178)
T ss_dssp TCEEEECCEEEEEEEECS-SSEEEEEEEEECSSSCCEECS
T ss_pred CCEEEEEEEEEeeeEECC-CCCEEEEEEEeeeecCeEEEc
Confidence 999999999999999998 999999999954224488887
No 15
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.94 E-value=5.4e-27 Score=195.79 Aligned_cols=105 Identities=22% Similarity=0.358 Sum_probs=79.7
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
|..+|+|+|+|||++||++|++++|++|++|+||++++++++. .+ +|.+. .++||+|++|+ ++|+.+.++|+
T Consensus 1 Ma~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~---~G---e~~d~-~T~wi~Vvawg-klAE~v~~~L~ 72 (199)
T 3eiv_A 1 MAGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQ---TN---EWKDG-ESLFLTCSVWR-QAAENVAESLQ 72 (199)
T ss_dssp ---CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------------CC-CCEEEEEEEET-HHHHHHHHHCC
T ss_pred CCcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccC---CC---cEecC-ccEEEEEEEEh-HHHHHHHHhcC
Confidence 4678999999999999999999999999999999996655442 12 45432 79999999998 89999999999
Q ss_pred CCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe
Q 029088 158 PGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~ 191 (199)
||++|+|+|+|+++.|+|+ ||++++.+||+|++
T Consensus 73 KG~~V~VeGrL~~rswedk-dG~kr~~~eVvA~~ 105 (199)
T 3eiv_A 73 RGMRVIVQGRLKQRSYEDR-EGVKRTVYELDVDE 105 (199)
T ss_dssp TTCEEEEEEEEEEEC---------CCEEEEEEEE
T ss_pred CCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEEE
Confidence 9999999999999999998 99999999999995
No 16
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.94 E-value=1.8e-27 Score=193.22 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=88.5
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch-HHHHhhc
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL-GGVVMKH 155 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l-Ae~v~~~ 155 (199)
|+++||+|+|+||||+|||+++++ ..|+.|+||+++.|+++.+ | +| .+.++||+|++|| ++ |+.+.+|
T Consensus 18 ~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~---g---e~--~~~Tdw~~Vv~wg-k~lAE~~~~y 86 (164)
T 3k81_C 18 CCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPT---Q---EV--VVEKDHHTIRCFG-ELFSAEVKQK 86 (164)
T ss_dssp --CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------------C--CCCCEEEEEEECC-HHHHHHHHHH
T ss_pred HhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCC---C---cC--ccceEEEEEEEEC-CHHHHHHHhh
Confidence 467899999999999999999998 7899999999977765532 2 23 2379999999998 78 9999999
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEE-EEEEEEEEe-CCcEEec
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVR-RIREIAIRR-NGTYLIF 198 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r-~~~eI~v~~-~g~l~fl 198 (199)
|+||++|+|+|+|+++.|+|+ +|+++ +..+|+|.. .|.|++|
T Consensus 87 L~KGs~V~VeGrL~tr~w~D~-~g~k~~~~~~i~V~~~~g~l~~L 130 (164)
T 3k81_C 87 VKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVI 130 (164)
T ss_dssp CCTTCEEEECCEEEEECCCCS-SCSCCCCEEEEEECTTTCCEEEE
T ss_pred cCCCCEEEEEEEEEeeeEEcC-CCCEEEEEEEEEEeCCCCEEEEe
Confidence 999999999999999999998 77654 456666664 5889887
No 17
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.93 E-value=8.6e-26 Score=198.72 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=89.4
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhc-
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKH- 155 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~- 155 (199)
|+++||+|+|+|+|++||+++++++|.++++|+||+++.|+++. | +| +..++||+|++|| ++|+.+.++
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~----G---~~--~~~t~~i~vv~~g-~~Ae~~~~~~ 70 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND----G---RE--RNLPWYHRVSILG-KPAEWQAERN 70 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC----------------CEEEEEEEEEEES-HHHHHHHHTC
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCC----C---CE--ecceEEEEEEEEc-HHHHHHHhhC
Confidence 44579999999999999999999999999999999999887652 3 23 2379999999998 899999999
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||
T Consensus 71 l~KG~~V~VeG~L~~r~~~dk-dG~~r~~~ev~a~---~i~~l 109 (301)
T 1se8_A 71 LKGGDAVVVEGTLEYRQWEAP-EGGKRSAVNVKAL---RMEQL 109 (301)
T ss_dssp CCTTCEEEEEEEEEEEEEC------CEEEEEEEEE---EEEEC
T ss_pred CCCCCEEEEEEEEEeeeEECC-CCCEEEEEEEEEe---EEEEe
Confidence 999999999999999999998 9999999999999 88887
No 18
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.93 E-value=2e-25 Score=192.71 Aligned_cols=109 Identities=19% Similarity=0.245 Sum_probs=94.0
Q ss_pred CccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcch--HHHHhhc
Q 029088 78 DPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERL--GGVVMKH 155 (199)
Q Consensus 78 ~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~l--Ae~v~~~ 155 (199)
|+++|+|+|+||| +||++|+++ |.++++|+||+++.|+++++ + ++ .+.|+||+|++|| ++ |+ +.++
T Consensus 143 M~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~---~---e~--~~~Tdw~~Vv~wg-k~~~AE-i~~~ 210 (257)
T 4dni_A 143 MKSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPT---Q---EV--VVEKDHHTIRCFG-ELFSAE-VKQK 210 (257)
T ss_dssp TSCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTT---C---SC--EEEEEEEEEEEES-HHHHHH-HHHH
T ss_pred ccccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCC---c---eE--ccceEEEEEEEEC-CccHHH-HHhh
Confidence 5689999999999 999999999 99999999999999986532 1 11 2489999999998 78 99 8889
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEEE-EEEEe-CCcEEecC
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIRE-IAIRR-NGTYLIFF 199 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~e-I~v~~-~g~l~fl~ 199 (199)
|+||++|+|+|+|+++.|+|+ +|+++|.++ |.|+- .|.+++|.
T Consensus 211 L~KG~~V~VeGrL~tr~~~D~-~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 211 VKEGNVVCVNGRLRLSPQLEP-SCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp CCTTCEEEEEEEEEEEEEECS-SSSCEEEEEEEEECTTTCEEEECC
T ss_pred CCCCCEEEEEEEEEeeeEEcC-CCCEEEEEEEEEEECCCCEEEEec
Confidence 999999999999999999998 899887766 55542 68888873
No 19
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.93 E-value=3.2e-25 Score=191.05 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=92.2
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+++||+|+|+|+|++||+++++++|.++++|+||+++.|+ + +| ...++||+|++|| ++|+.+. +|
T Consensus 124 m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~-------g---~~--~~~t~~~~v~~wg-~~Ae~~~-~l 189 (264)
T 2fxq_A 124 LRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRR-------G---QE--EERTHFLEVQAWR-ELAEWAS-EL 189 (264)
T ss_dssp -CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------------------EEEEEEEEEH-HHHHHHT-TC
T ss_pred cccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcC-------C---CC--ccccEEEEEEEEC-hHHHHhh-hc
Confidence 55689999999999999999999999999999999999875 1 12 1268999999998 8999999 99
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|+++ +|++++.++|+|+ .|+||
T Consensus 190 ~KG~~V~V~G~l~~~~~~~~-dG~~~~~~ev~a~---~i~~l 227 (264)
T 2fxq_A 190 RKGDGLLVIGRLVNDSWTSS-SGERRFQTRVEAL---RLERP 227 (264)
T ss_dssp CTTCEEEEEEEEEEEEEECT-TSCEEEEEEEEEE---EEECC
T ss_pred CCCCEEEEEEEEEeeEEECC-CCCEEEEEEEEEE---EEEEC
Confidence 99999999999999999998 9999999999999 78876
No 20
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.93 E-value=1.9e-25 Score=192.45 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=87.6
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|+.+||+|+|+|+|++||++|++++|.+++.|+||+++.|+++. | +| +..++||+|++|| ++|+.+.++|
T Consensus 1 M~~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~----G---~~--~~~t~~~~v~~~g-~~Ae~~~~~l 70 (264)
T 2fxq_A 1 MARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDES----G---QE--REVPWYHRVRLLG-RQAEMWGDLL 70 (264)
T ss_dssp --CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTT----S---CE--EEEEEEEEEEEET-HHHHHHTTTC
T ss_pred CCCceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCC----C---CE--ecccEEEEEEEEc-hHHHHHHHhC
Confidence 33479999999999999999999999999999999999998652 3 23 2369999999998 8999999999
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|++ +|++++.++|+|+ +|+||
T Consensus 71 ~KG~~V~V~G~L~~~~~~~--dG~~r~~~ev~a~---~i~~l 107 (264)
T 2fxq_A 71 EKGQLIFVEGRLEYRQWEK--DGEKKSEVQVRAE---FIDPL 107 (264)
T ss_dssp CTTCEEEEEEEEEEC-----------CCEEEEEE---EEEEC
T ss_pred CCCCEEEEEEEEEeeeEEe--CCEEEEEEEEEEE---EEEEC
Confidence 9999999999999999997 8999999999999 78876
No 21
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=2.3e-25 Score=169.59 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=78.7
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCE
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGST 161 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~ 161 (199)
|+|+|+|+|++|||++++++|..++.|+||+++.+ + .++|++|++|+ ++|+.+.. .||++
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~--------~---------~~Dfi~ivvw~-klAe~~~~--~kG~~ 71 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLS--------E---------TKDYLPITISN-RLFEGMNL--EVGTR 71 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTT--------S---------CEEEEEEEEEG-GGSTTCCC--CTTCE
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCC--------C---------CCcEEEEEEEh-HHhhHHhh--cCCCE
Confidence 99999999999999999999999999999998753 1 58999999997 89998864 49999
Q ss_pred EEEEEEeEe-eeeeCCCCCeEEEEEEEEEEeCCcEEecC
Q 029088 162 IYVEGNLEQ-KVFNDPITGLVRRIREIAIRRNGTYLIFF 199 (199)
Q Consensus 162 V~VeGrL~~-~~~~d~~dG~~r~~~eI~v~~~g~l~fl~ 199 (199)
|+|+|+|++ +.|+++ +|++|+.++|+|+ +|+||.
T Consensus 72 v~v~G~lrsy~~~~~~-dG~~R~v~eV~a~---~i~fld 106 (107)
T 4gs3_A 72 VKIEGQLRSYNRKSPE-EGKNKLILTVFAR---DISVVP 106 (107)
T ss_dssp EEEEEEEEEEECC---------EEEEEEEE---EEEEEC
T ss_pred EEEEEEEEecceEECC-CCCEEEEEEEEEE---EEEEcc
Confidence 999999986 789888 9999999999999 999983
No 22
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.92 E-value=2.2e-25 Score=175.74 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=85.9
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
.+||+|+|+|||++|||+|++++|.+|+.|+||++ .|++. .|+ + ++.++||+|++|| ++|+.+.+||+|
T Consensus 17 ~M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~-~~~~~----~G~---~--~~~~~~i~vv~wG-k~AE~~~~yl~K 85 (134)
T 1v1q_A 17 LMTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHR-SVQEE----AGF---H--RQAWCQMPVIVSG-HENQAITHSITV 85 (134)
T ss_dssp GCCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEE-EEEEE----TTE---E--EEEEEEEEEEEES-TGGGGGGTTCCT
T ss_pred cceeEEEEEEEECcCCceEECCCCCEEEEEEEEEe-CcCcC----CCC---E--ecceEEEEEEEEh-HHHHHHHHhcCC
Confidence 34599999999999999999999999999999996 45433 132 1 2367899999998 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|++|+|+|+|+++. ++ +|++++.+ +|+ +|+||
T Consensus 86 Gs~V~VeGrL~tr~--~k-~G~kr~~~--~a~---~i~~l 117 (134)
T 1v1q_A 86 GSRITVQGFISCHK--AK-NGLSKMVL--HAE---QIELI 117 (134)
T ss_dssp TCEEEEEEEEEEEC--TT-TTSCEEEE--EEE---EEEET
T ss_pred CCEEEEEEEEEEEE--CC-CCCEEEEE--EEE---EEEEC
Confidence 99999999999984 56 89988876 787 78887
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.92 E-value=8.3e-25 Score=192.46 Aligned_cols=107 Identities=15% Similarity=0.272 Sum_probs=91.6
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|..+||+|+|+|+|++||+++++++|.+++.|+||+++.|+++. | +|. ..++||+|++|| ++|+.+.+ |
T Consensus 125 m~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~----G---e~~--~~t~~i~vvawg-~~Ae~~~~-l 193 (301)
T 1se8_A 125 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ----G---QRQ--EKVHYIDATLWR-DLAENMKE-L 193 (301)
T ss_dssp EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT----S---CEE--EEEEEEEEEEET-HHHHHHTT-C
T ss_pred hhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCC----C---Ccc--cccEEEEEEECC-HHHHHHHh-c
Confidence 33579999999999999999999999999999999999987652 3 342 369999999998 89999999 9
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+||++|+|+|+|+++.|+++ +|++++.++|+|+ +|+||
T Consensus 194 ~KG~~V~V~GrL~~~~y~dk-dG~~r~~~ev~a~---~i~~l 231 (301)
T 1se8_A 194 RKGDPVMIMGRLVNEGWTDK-DGNKRNSTRVEAT---RVEAL 231 (301)
T ss_dssp CTTCEEEEEEEEEEEECC-------CEEEEEEEE---EEEEC
T ss_pred CCCCEEEEEEEEeeeeEECC-CCcEEEEEEEEEE---EEEEe
Confidence 99999999999999999998 9999999999999 88887
No 24
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.92 E-value=4.5e-25 Score=166.32 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=77.9
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
+||+|+|+|+|++||++|++++|.+++.|+||++. +... . +|. +....||+|++|| ++|+.+.+||+||
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~-~~~~----~----~~~-r~~~~~~~vv~~g-~~Ae~~~~~l~KG 69 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRS-VQEE----A----GFH-RQAWCQMPVIVSG-HENQAITHSITVG 69 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-EEEE----T----TEE-EEEEEEEEEEEES-STTHHHHTTCCTT
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeC-cccc----C----Cce-eceeEEEEEEEEh-HHHHHHHhhCCCC
Confidence 47999999999999999999999999999999952 2111 0 121 1234559999998 8999999999999
Q ss_pred CEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 160 STIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
++|+|+|+|+++ +++ +|+++ ++|+|+ +|+||
T Consensus 70 ~~V~V~G~L~~~--~~~-~G~~r--~~v~~~---~i~~l 100 (104)
T 1txy_A 70 SRITVQGFISCH--KAK-NGLSK--MVLHAE---QIELI 100 (104)
T ss_dssp CEEEEEEEEEC-----------C--CEEEEE---EEEEC
T ss_pred CEEEEEEEEEec--cCC-CCCEE--EEEEEE---EEEEC
Confidence 999999999999 566 89988 899999 88887
No 25
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.89 E-value=5.7e-23 Score=158.16 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=81.3
Q ss_pred CceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCC
Q 029088 81 IFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGS 160 (199)
Q Consensus 81 ~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~ 160 (199)
||+|+|+|+|++|||+|++++|.+++.|+||+++.+. . .+.+ ++...|++|++|| ++|+.+ +||+||+
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~-~----~g~~-----r~~~~~i~vv~~G-k~AE~~-~~l~kGs 68 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVV-E----AGHP-----RRVELTISAVALG-DLALLL-ADTPLGT 68 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECC-C----CC-------CEEEEEEEEEEET-HHHHHH-TTCCTTC
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceee-c----CCCe-----eeeeEEEEEEEEh-HHHHhh-hccCCCC
Confidence 7999999999999999999999999999999975543 2 1221 3356669999998 899998 9999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 161 TIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+|+|+|+|+++. + +| +.++|.|+ +|+||
T Consensus 69 ~V~VeGrL~trs---~-~G---~kl~l~a~---~Ie~l 96 (115)
T 3fhw_A 69 EMQVQGFLAPAR---K-DS---VKVKLHLQ---QARRI 96 (115)
T ss_dssp EEEEEEEEEESS---T-TC---SSEEEEEE---EEEEC
T ss_pred EEEEEEEEEECC---C-CC---CEEEEEEE---EEEEc
Confidence 999999999985 4 78 57899999 78876
No 26
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.89 E-value=6.9e-23 Score=154.78 Aligned_cols=82 Identities=16% Similarity=0.010 Sum_probs=69.9
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
++|+|+|+|+|++|||+|++++|.+++.|+||+++.+++ +|+ + ++.+.||+|++|| ++|+ +.+ |+||
T Consensus 6 m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~-----~g~---~--~~~~~~i~vv~~g-k~Ae-~~~-l~KG 72 (103)
T 3k8a_A 6 FTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEE-----NGQ---Q--CLVQLEIPARILG-RQAE-EWQ-YRQG 72 (103)
T ss_dssp CCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEE-----TTE---E--EEEEEEEEEEEEH-HHHH-HST-TCTT
T ss_pred cccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCcc-----CCC---E--EEeeEEEEEEEEh-HHhh-hhc-cCCC
Confidence 349999999999999999999999999999999877652 132 1 2244559999998 8999 665 9999
Q ss_pred CEEEEEEEeEeeeee
Q 029088 160 STIYVEGNLEQKVFN 174 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~ 174 (199)
++|+|+|+|+++.|.
T Consensus 73 ~~v~veGrL~~rs~~ 87 (103)
T 3k8a_A 73 DCATVEGFLAQKSRR 87 (103)
T ss_dssp CEEEEEEEEEESSSS
T ss_pred CEEEEEEEEEECccC
Confidence 999999999999994
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.84 E-value=7.3e-21 Score=143.35 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=69.6
Q ss_pred cCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCC
Q 029088 80 GIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPG 159 (199)
Q Consensus 80 ~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG 159 (199)
.||+|+|+|+|++|||+|++++|.+++.|+||+++.+++. +. + ++...|++|++|| ++|+.+.+ ++||
T Consensus 1 ~MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~-----g~--~---r~~~f~i~vv~wG-k~AE~~~~-~~kG 68 (101)
T 3en2_A 1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEA-----QA--A---RQVEFSIEALGAG-KMASVLDR-IAPG 68 (101)
T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC---------E---EEEEEEEEEEEET-HHHHHHTT-SCTT
T ss_pred CcCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecC-----CC--c---EeeeEEEEEEEEh-HHHHHHhh-cCCC
Confidence 3799999999999999999999999999999998776432 22 1 2245559999999 89999997 7899
Q ss_pred CEEEEEEEeEeeeeeCC
Q 029088 160 STIYVEGNLEQKVFNDP 176 (199)
Q Consensus 160 ~~V~VeGrL~~~~~~d~ 176 (199)
++|.|+|+|+++.|..+
T Consensus 69 s~V~VeGrL~trs~~s~ 85 (101)
T 3en2_A 69 TVLECVGFLARKHRSSK 85 (101)
T ss_dssp CEEEEEEEEEECC----
T ss_pred CEEEEEEEEEeCcCCCC
Confidence 99999999999999764
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.83 E-value=4.2e-20 Score=147.43 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=83.1
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
+.+|+|+|+|+|+ ||+.+++. +..++.|+||+++.+... ++ ..++||+|.|||+++|+.+.++|+|
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~-----ge-------~~tdf~~V~vfGg~lAE~i~~ylkk 107 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSP-----GD-------PDKDFHTVRVFDSDYSSRVKEQLRD 107 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCT-----TS-------CSEEEEEEEECSHHHHHHHHHHCCT
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCC-----CC-------CccceEEEEEECChHHHHHHHHhcC
Confidence 6789999999996 88889885 779999999999876421 22 2799999999966899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEEE
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIAI 189 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v 189 (199)
|++|+|+|||+++.|+|+ +|+++|..-++-
T Consensus 108 G~rVlVeGRLrmn~~~d~-~gkk~Y~~p~i~ 137 (148)
T 3stb_C 108 GEWFLVTGRLRMVPQYDG-SMRKYYHYPVIQ 137 (148)
T ss_dssp TCEEEEEEEEEEEEEEET-TTTEEEEEEEEE
T ss_pred CCEEEEEEEEEcceeECC-CCCEEeeccEEE
Confidence 999999999999999998 999997665543
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.81 E-value=7.5e-20 Score=157.89 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=85.1
Q ss_pred CCCCcCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHH
Q 029088 73 LENGLDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (199)
Q Consensus 73 ~~~~~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v 152 (199)
|-.|. ++||+|+|+|+|++| |+|++++|. ++.|++++...+. + .++ ..++|+.|++||+++|+.+
T Consensus 23 ~~~~~-r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~-~----~ge-------~~~df~~vv~wg~k~AE~~ 87 (257)
T 4dni_A 23 VAAHW-RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGP-S----PGD-------PDKDFHTVRVFDSDYSSRV 87 (257)
T ss_dssp HTTTS-CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCC-C----SSC-------CCEEEEEEEECSHHHHHHH
T ss_pred hhhhh-hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCC-C----CCC-------CcccEEEEEEECCHHHHHH
Confidence 33443 789999999999999 999999884 7788888877643 2 233 1577888889985799999
Q ss_pred hhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEe
Q 029088 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRR 191 (199)
Q Consensus 153 ~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~ 191 (199)
.+||+||++|+|+|+|++ |+++ ||++++.+||+|++
T Consensus 88 ~~yl~kG~~V~VeGrL~~--~~~~-dG~kr~~~evva~~ 123 (257)
T 4dni_A 88 KEQLRDGEWFLVTGRLRM--VPQY-DGSMRKYYHYPVIQ 123 (257)
T ss_dssp HHHCCTTCEEEEEEEEEE--EEEE-CSSSSSEEEEEEEE
T ss_pred HHhccCCCEEEEEEEEEE--eECC-CCCcEEEEEEEEEE
Confidence 999999999999999999 7777 99999999999995
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.14 E-value=0.0053 Score=45.89 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchH--HHHhhcCCCCC
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLG--GVVMKHLVPGS 160 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lA--e~v~~~L~KG~ 160 (199)
+++|+|++-. .+.-+. ....+..|+|.+... ++ ..-++|.|-||| ..+ +.+.+.|+-|.
T Consensus 5 n~vlvG~V~D-VQ~Gfl-~~~~V~Qftl~~d~e---------~~-------~eke~~tVRC~G-d~~~~~~lk~~lk~g~ 65 (105)
T 4dka_C 5 NALMIGRIAD-VQHGFL-GAMTVTQYVLEVDGG---------AS-------GEKEFIVIRCMG-DNFPASLLKDQVKLGS 65 (105)
T ss_dssp EEEEEEEEEE-EEEEEE-TTEEEEEEEEEECC--------------------CCEEEEEEEEC-C---------CCCTTC
T ss_pred ceEEEEEEEE-eeeccc-ccceEEEEEEEEeCC---------CC-------CcccEEEEEEcC-ccchHHHHHHHHhCCC
Confidence 5778999876 222222 346899999999432 11 257899999999 455 78999999999
Q ss_pred EEEEEEEeEeeeeeCCCCCeEE--EEEEEEEE
Q 029088 161 TIYVEGNLEQKVFNDPITGLVR--RIREIAIR 190 (199)
Q Consensus 161 ~V~VeGrL~~~~~~d~~dG~~r--~~~eI~v~ 190 (199)
.|+|.|+|+...--|. +.++ ...-|.|.
T Consensus 66 ~v~V~GrLRm~p~~d~--~~kkyy~yP~IqV~ 95 (105)
T 4dka_C 66 RVLVQGTLRMNRHVDD--VSKRLHAYPFIQVV 95 (105)
T ss_dssp EEEEEEEEECCCEECT--TTCSEECCCEEEEC
T ss_pred EEEEEeEEEeeecccc--ccceeccCCEEEEE
Confidence 9999999999665553 4443 34445444
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.22 E-value=0.12 Score=37.23 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=56.1
Q ss_pred cCccCceEEEEEEeCCCCeEEEe--CCCc--EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHH
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKL--KSGR--TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~--~~G~--~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v 152 (199)
|.++ ..+.++|+|-.-.+.+.. ++|. .+..+.|+- .|--+++++|+ ..|+.
T Consensus 8 l~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D----------------------eTG~I~~tlW~-~~~~~- 62 (97)
T 3e0e_A 8 LMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD----------------------DTGSIRGTLWN-ELADF- 62 (97)
T ss_dssp CCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE----------------------TTEEEEEEEEG-GGGGC-
T ss_pred CCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----------------------CCCcEEEEEEC-Ccccc-
Confidence 4456 789999999987766664 3664 344444432 12268999998 56665
Q ss_pred hhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEe
Q 029088 153 MKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197 (199)
Q Consensus 153 ~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~f 197 (199)
.+++|+.|.|.|+.+ .|. | ..++.+.+.|.|+-
T Consensus 63 --~i~~Gdvv~i~g~v~--~~~----~----~~el~~g~~~~i~k 95 (97)
T 3e0e_A 63 --EVKKGDIAEVSGYVK--QGY----S----GLEISVDNIGIIEK 95 (97)
T ss_dssp --CCCTTCEEEEEEEEE--EC----------CEEEEEEEEEEEEC
T ss_pred --ccCCCCEEEEEEEEE--EcC----C----eEEEEECCCcEEEE
Confidence 699999999999663 331 2 45888888888763
No 32
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=94.21 E-value=0.95 Score=33.04 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=57.0
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcE--EEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRT--VTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~--v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
|.++++.|.++|.|-.--+.+.+++|.. +..+.|+-. |--+++++|++ .
T Consensus 9 l~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~De----------------------TG~I~~tlW~~-~------ 59 (106)
T 2k75_A 9 VSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDD----------------------TARIRISSFGK-Q------ 59 (106)
T ss_dssp CCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECS----------------------SCEEEEEEESS-C------
T ss_pred cCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcC----------------------CCeEEEEEEcC-c------
Confidence 5567788899999988766655667764 555444421 11489999984 3
Q ss_pred cCCCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 155 HLVPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 155 ~L~KG~~V~Ve-GrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
+++|+.|.|. |... .|. | ..+|.+.+.|.|.-+
T Consensus 60 -l~~Gdvv~i~ng~v~--~~~----g----~~~L~v~~~~~I~~~ 93 (106)
T 2k75_A 60 -LQDSDVVRIDNARVA--QFN----G----YLSLSVGDSSRIESV 93 (106)
T ss_dssp -CCTTEEEEEEEEEEE--EET----T----EEEEEECTTSEEEEC
T ss_pred -cCCCCEEEEEeeEEe--EEC----C----EEEEEECCcEEEEEC
Confidence 9999999999 7765 353 3 467777777777643
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=94.05 E-value=0.31 Score=35.82 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=57.7
Q ss_pred cCccCceEEEEEEeCCCCeEEEe--CCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKL--KSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~--~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
|.++ ..+.++|+|-.--+.+.+ .+|.....+++.... . |--++|++|+ ..|+.
T Consensus 11 L~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D----~----------------TG~IrvtlW~-~~a~~--- 65 (105)
T 3dm3_A 11 LSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD----E----------------TGSIRVTLWD-NLTDI--- 65 (105)
T ss_dssp CCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE----T----------------TEEEEEEEEG-GGGGS---
T ss_pred CCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----C----------------CCcEEEEEEC-ccccc---
Confidence 3344 789999999988777664 367665555555531 1 1148999998 67776
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~ 196 (199)
.+.+|+.|.|.|+.+... .| ..++.+.+.+.|.
T Consensus 66 ~l~~Gdvv~i~g~vk~~~-----~g----~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGY-----YG----GLECTANYVEILK 98 (105)
T ss_dssp CCCTTCEEEEEEEEEECT-----TS----SEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEEEcc-----CC----CEEEEeCCceEEE
Confidence 799999999988776652 12 2356666555543
No 34
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.92 E-value=0.48 Score=34.55 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=48.5
Q ss_pred ceEEEEEEeCCCCeEE--EeCCC--cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCC
Q 029088 82 FKAILVGQVGQSPVQK--KLKSG--RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLV 157 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k--~~~~G--~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~ 157 (199)
..+.++|.|..--+++ .+++| ..+..+.|+-. +--+++++|+ ..++.. +.++
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~----------------------TG~I~~t~w~-~~~~~~-~~l~ 72 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD----------------------TGELRAVFWT-ENIKLL-KKFR 72 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET----------------------TEEEEEEEET-TGGGGG-GTCC
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC----------------------CCeEEEEEeC-chhhhh-hcCC
Confidence 3568999998864555 45677 56766666542 1257899998 566644 6799
Q ss_pred CCCEEEEEEEeEeeeee
Q 029088 158 PGSTIYVEGNLEQKVFN 174 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~ 174 (199)
+|+.|.|.|..-...|.
T Consensus 73 ~G~vv~i~g~~v~~~f~ 89 (115)
T 2k50_A 73 EGDVIRIKDVNIRGGFG 89 (115)
T ss_dssp TTSEEEEEEEEECCCSS
T ss_pred CCCEEEEEeeEEccccC
Confidence 99999999987544463
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.18 Score=37.31 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=52.1
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCCC-cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKSG-RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~G-~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
.|.++++...|.|+|..--++|...+. ..--.|++.. .|. .. -+++++|+ .+|+.+..
T Consensus 9 ~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L----~De---------------~G-~I~at~~~-~~~~~f~~ 67 (114)
T 1ynx_A 9 QLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNF----LDT---------------SG-EIRATAFN-DFATKFNE 67 (114)
T ss_dssp GCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEE----EET---------------TE-EEEEEECH-HHHHHHHH
T ss_pred HCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEE----ECC---------------CC-eEEEEECH-HHHHHHHh
Confidence 367889999999999998888776531 1223344432 111 22 68999998 79999999
Q ss_pred cCCCCCEEEEEE
Q 029088 155 HLVPGSTIYVEG 166 (199)
Q Consensus 155 ~L~KG~~V~VeG 166 (199)
.|+.|+.++|.+
T Consensus 68 ~l~eG~vy~Is~ 79 (114)
T 1ynx_A 68 ILQEGKVYYVSK 79 (114)
T ss_dssp HSCSSSEEEEES
T ss_pred hcccCcEEEECC
Confidence 999999999998
No 36
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=93.88 E-value=1.3 Score=32.27 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=61.7
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
-++|.|.|.|-|-+ .+...+ +.-...++...+.|- + +.-|+|+-+-+-| .+|--+.+|.+|
T Consensus 6 gMLN~V~LEG~IeS---~kWS~k-KTGF~VTIkQkR~FG--------e------r~FTDyyViYAN~-QL~~ELEky~~k 66 (110)
T 2hql_A 6 GMLNRVFLEGEIES---SCWSVK-KTGFLVTIKQMRFFG--------E------RLFTDYYVIYANG-QLAYELEKHTKK 66 (110)
T ss_dssp -CCEEEEEEEEEEE---EEECTT-CSEEEEEEEEEEEET--------T------EEEEEEEEEEEEH-HHHHHHHHHHTT
T ss_pred ceEEEEEEeeeeeh---hccccc-CceEEEEEeehhhhc--------c------ccceeEEEEEECC-eeehhHHHhhhh
Confidence 46899999999876 444443 222234455554442 2 2468999999987 899999999999
Q ss_pred CCEEEEEEEeEeeeeeCCCCCeEEEEEEEE
Q 029088 159 GSTIYVEGNLEQKVFNDPITGLVRRIREIA 188 (199)
Q Consensus 159 G~~V~VeGrL~~~~~~d~~dG~~r~~~eI~ 188 (199)
=..+.|+|.|++..- +..+......+++
T Consensus 67 ~k~isieG~L~TY~e--kkS~iWKTtI~~~ 94 (110)
T 2hql_A 67 YKTISIEGILRTYLE--RKSEIWKTTIEIV 94 (110)
T ss_dssp CSEEEEEEEEEEEEE--TTTTEEEEEEEEE
T ss_pred ceEEEEeeehhhHHH--HhcccceeEEEEE
Confidence 999999999988643 3266655544443
No 37
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.74 E-value=1.2 Score=32.83 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=54.4
Q ss_pred cCccCceEEEEEEeCCCCeEE--EeCCCc-EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHh
Q 029088 77 LDPGIFKAILVGQVGQSPVQK--KLKSGR-TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVM 153 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k--~~~~G~-~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~ 153 (199)
|.++.+.+.++|.|-.--+.+ .+++|+ .+..+.|+-. |--+++++|+ ..|
T Consensus 8 L~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~----------------------TG~I~~tlW~-~~~---- 60 (119)
T 1o7i_A 8 LKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDE----------------------TGRVKLTLWG-KHA---- 60 (119)
T ss_dssp CCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEET----------------------TEEEEEEEEG-GGT----
T ss_pred CcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeC----------------------CCEEEEEEEC-Chh----
Confidence 334566788888887754434 456786 5555555432 1138999998 555
Q ss_pred hcCCCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEe
Q 029088 154 KHLVPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197 (199)
Q Consensus 154 ~~L~KG~~V~Ve-GrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~f 197 (199)
+.+..|+.|.|. |++.. |. | ..++.+.+.|.|..
T Consensus 61 ~~~~~G~vv~i~~g~v~~--~~----g----~~qL~i~~~~~i~~ 95 (119)
T 1o7i_A 61 GSIKEGQVVKIENAWTTA--FK----G----QVQLNAGSKTKIAE 95 (119)
T ss_dssp TCCCTTCEEEEEEEEEEE--ET----T----EEEEEECTTCEEEE
T ss_pred hcCCCCCEEEEEeEEEEE--eC----C----EEEEEECCCEEEEE
Confidence 358999999999 77654 52 3 24666666666654
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=84.81 E-value=4.2 Score=40.95 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcc-hHHHHhhcCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPER-LGGVVMKHLV 157 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~-lAe~v~~~L~ 157 (199)
..+..|++.|.|-. .+.+.+++|+.+..|.|.- .|+-+.|..|-+. ....+.+.++
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~td----------------------~~~~~~~k~f~~~~~~~~~~~~~~ 71 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKITD----------------------YTNSILVKMFSRDKEDAELMSGVK 71 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEEC----------------------SSCEEEEEEECSSHHHHHHHHTCC
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEEe----------------------CCCCEEEEEeecccchHHHHhcCC
Confidence 34689999999887 7889999999887777621 1335788888522 2234567799
Q ss_pred CCCEEEEEEEeEeeeeeC
Q 029088 158 PGSTIYVEGNLEQKVFND 175 (199)
Q Consensus 158 KG~~V~VeGrL~~~~~~d 175 (199)
+|+-|.|.|.++...|..
T Consensus 72 ~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 72 KGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp TTCEEEEEEEEEEETTTT
T ss_pred CCCEEEEEEEEEeccCCc
Confidence 999999999999998864
No 39
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=84.74 E-value=2.5 Score=34.45 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=50.7
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCC-CcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhh
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKS-GRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMK 154 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~-G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~ 154 (199)
.|.++++...|.|+|..--++|...+ +...-.|++..- |. .. -+++++|+ .+|+....
T Consensus 13 ~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----De---------------~G-~I~at~~~-~~~~~~~~ 71 (246)
T 1jmc_A 13 SLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV----DE---------------SG-EIRATAFN-EQVDKFFP 71 (246)
T ss_dssp GCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE----CS---------------SC-EEEEEEEH-HHHHHHGG
T ss_pred HCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEE----CC---------------CC-eEEEEECh-HHHHHhhh
Confidence 36678899999999998777776542 122223444321 11 12 58999997 79999999
Q ss_pred cCCCCCEEEEEE
Q 029088 155 HLVPGSTIYVEG 166 (199)
Q Consensus 155 ~L~KG~~V~VeG 166 (199)
.|+.|+-++|.+
T Consensus 72 ~l~~G~vy~i~~ 83 (246)
T 1jmc_A 72 LIEVNKVYYFSK 83 (246)
T ss_dssp GCCTTCEEEEEC
T ss_pred hcccCCEEEECC
Confidence 999999999998
No 40
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=80.44 E-value=5.5 Score=35.63 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=50.3
Q ss_pred CcCccCceEEEEEEeCCCCeEEEeCC--Cc-EEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHH
Q 029088 76 GLDPGIFKAILVGQVGQSPVQKKLKS--GR-TVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVV 152 (199)
Q Consensus 76 ~~~~~~N~viLiG~Ig~dPe~k~~~~--G~-~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v 152 (199)
.|.++++...|.|+|..--++|...+ |. .+..|.|+ |. .. -+++++|+ .+++.+
T Consensus 8 ~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~------De---------------~G-~I~at~~~-~~~~~f 64 (444)
T 4gop_C 8 GLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL------DD---------------SG-EIKATGFN-DAVDRF 64 (444)
T ss_dssp TCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE------CS---------------SC-EEEEEEET-HHHHHH
T ss_pred HCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEE------cC---------------CC-EEEEEEeH-HHHHHH
Confidence 36688899999999998766776543 32 33333332 11 11 68999998 799999
Q ss_pred hhcCCCCCEEEEEE
Q 029088 153 MKHLVPGSTIYVEG 166 (199)
Q Consensus 153 ~~~L~KG~~V~VeG 166 (199)
...|+.|+-++|.+
T Consensus 65 ~~~l~eG~vy~Is~ 78 (444)
T 4gop_C 65 YPLLQENHVYLISK 78 (444)
T ss_dssp TTTCCTTCEEEEES
T ss_pred HHheecCCEEEEcC
Confidence 99999999999998
No 41
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=75.67 E-value=25 Score=27.08 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=52.5
Q ss_pred cCccCceEEEEEEeCCCCeEE---EeC--CC--------cEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEE
Q 029088 77 LDPGIFKAILVGQVGQSPVQK---KLK--SG--------RTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSV 143 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k---~~~--~G--------~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~ 143 (199)
|.++++.+.|+|+|-+.-+.+ .+. +| ..++...||- .|=-+++++
T Consensus 22 L~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD----------------------eTG~I~ftl 79 (145)
T 1wjj_A 22 LKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD----------------------ETGCILFTA 79 (145)
T ss_dssp CCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC----------------------SSCEEEEEE
T ss_pred cCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc----------------------CCcEEEEEE
Confidence 556778888999987743332 121 22 1344333321 233589999
Q ss_pred eCcchHHHHhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEe
Q 029088 144 YPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197 (199)
Q Consensus 144 ~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~f 197 (199)
|+ ..++. +++|+.|.|.+-.-. .|. | ..++.+.+.|.|..
T Consensus 80 W~-e~~~~----l~~Gd~v~i~na~v~-~~~----G----~~~L~vgk~g~Ie~ 119 (145)
T 1wjj_A 80 RN-DQVDL----MKPGATVILRNSRID-MFK----G----TMRLGVDKWGRIEA 119 (145)
T ss_dssp CT-THHHH----TCTTCEEEEEEEEEE-EET----T----EEEEEECTTCCBCC
T ss_pred ec-CCcCc----CCCCCEEEEeccEEE-eEC----C----EEEEEECCCEEEEE
Confidence 97 46543 779999999874332 463 3 46788887777754
No 42
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=75.17 E-value=15 Score=33.03 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=47.1
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCc-chHHHHhhcCC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPE-RLGGVVMKHLV 157 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~-~lAe~v~~~L~ 157 (199)
+.+..+.+.|.|...|.. .++|..+ |+|..+ +.-++|++|.+ +....+...|.
T Consensus 282 ~~~~~~~v~G~V~~~P~~--~~GGHV~--f~l~d~----------------------~~~i~c~ayeptk~fr~~vr~L~ 335 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYD--IEGGHVF--FEIDTK----------------------FGSVKCAAFEPTKQFRNVIRLLR 335 (402)
T ss_dssp CTTCEEEEEEEEEEEEEE--ETTTEEE--EEEEET----------------------TEEEEEEECGGGTTHHHHHTTCC
T ss_pred ccCceEEEEEEEecCcEe--ccCceEE--EEEEcC----------------------CCEEEEEEEccchHHHHHHhcCC
Confidence 456788999999997744 5666533 555432 11489999942 45667777899
Q ss_pred CCCEEEEEEEeEe
Q 029088 158 PGSTIYVEGNLEQ 170 (199)
Q Consensus 158 KG~~V~VeGrL~~ 170 (199)
+||.|.|-|.++.
T Consensus 336 ~GD~V~v~G~v~~ 348 (402)
T 3au7_A 336 KGDVVEVYGSMKK 348 (402)
T ss_dssp TTCEEEEEEEEET
T ss_pred CCCEEEEEEeecC
Confidence 9999999999543
No 43
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=65.08 E-value=22 Score=29.49 Aligned_cols=49 Identities=12% Similarity=0.033 Sum_probs=32.5
Q ss_pred eEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEeeeeeC-CCCCeEEEEEEEEEE
Q 029088 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFND-PITGLVRRIREIAIR 190 (199)
Q Consensus 137 ~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~~d-~~dG~~r~~~eI~v~ 190 (199)
..+.|.+.+ .+.+.+++||+|.|.|-++...... ...+...+.+.|.|.
T Consensus 211 rsi~v~l~~-----dLvd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an 260 (268)
T 2vl6_A 211 RQLEIILED-----DLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVS 260 (268)
T ss_dssp CEEEEEEEG-----GGTTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEE
T ss_pred cEEEEEEcc-----CccCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEE
Confidence 344555554 2567899999999999998765431 113444567777776
No 44
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=63.54 E-value=30 Score=25.64 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHH---HHhhc
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGG---VVMKH 155 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe---~v~~~ 155 (199)
..++.|.|+|.|-. +. .+..++.|.|.- + |--+.|..|. ...+ .-...
T Consensus 34 ~~i~~V~iVG~V~~---~~---~~~~~~~~~ldD------~----------------TG~I~~~~W~-~~~~~~~~~~~~ 84 (136)
T 4gop_B 34 AELGQLTFVAVVRN---IS---RNATNVAYSVED------G----------------TGQIEVRQWL-DSSSDDSSKASE 84 (136)
T ss_dssp SBCCEEEEEEEEEE---EE---ECSSEEEEEEEC------S----------------SCEEEEEEEC-C--------CCS
T ss_pred EEEEEEEEEEEEEE---EE---ecCCeEEEEEEC------C----------------CCCEEEEEec-ccCCcccccccc
Confidence 56899999999987 22 234577777742 1 1147888885 3332 13567
Q ss_pred CCCCCEEEEEEEeEe
Q 029088 156 LVPGSTIYVEGNLEQ 170 (199)
Q Consensus 156 L~KG~~V~VeGrL~~ 170 (199)
+..|+.|.|.|+++.
T Consensus 85 ~~~g~yVrV~G~v~~ 99 (136)
T 4gop_B 85 IRNNVYVRVLGTLKS 99 (136)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE
Confidence 999999999999966
No 45
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=62.86 E-value=7.4 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=24.7
Q ss_pred EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEec
Q 029088 166 GNLEQKVFNDPITGLVRRIREIAIRRNGTYLIF 198 (199)
Q Consensus 166 GrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~fl 198 (199)
|.-+.+.|+|. +|.-+.-.+++-=.+|+|+++
T Consensus 1 ~p~k~RtWtDr-tG~F~VeA~flg~~dgki~Lh 32 (68)
T 2hbp_A 1 GSKKSRLWVDR-SGTFKVDAEFIGCAKGKIHLH 32 (68)
T ss_dssp --CCSEEEEBS-SSCCEEEEEEEEEETTEEEEE
T ss_pred CCccccEEEcC-CCCeEEEEEEEEEeCCEEEEE
Confidence 34567999998 999777777777779998875
No 46
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=51.44 E-value=23 Score=36.33 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=26.9
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
.|.+.|-|.. -..+.+++|..++.++|.-. +--+.|++|+ +.-+.....|..|..|
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD~----------------------tg~~evvvf~-~~~~~~~~~l~~~~~~ 1099 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSDE----------------------TGALEVVVFG-RAYEGVSPKLKEDIPL 1099 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEET----------------------TEEEEEC--------------CTTCEE
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEEC----------------------CCCEEEEEcH-HHHHHHHHHhccCCEE
Confidence 3666666665 33445667776766665432 2237899997 6777788889999999
Q ss_pred EEEEEeEe
Q 029088 163 YVEGNLEQ 170 (199)
Q Consensus 163 ~VeGrL~~ 170 (199)
+|.|+++.
T Consensus 1100 ~v~G~v~~ 1107 (1220)
T 2hpi_A 1100 LVLAEVEK 1107 (1220)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEEE
Confidence 99999974
No 47
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=48.45 E-value=62 Score=23.75 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=40.4
Q ss_pred ccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHH--HHhhcC
Q 029088 79 PGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGG--VVMKHL 156 (199)
Q Consensus 79 ~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe--~v~~~L 156 (199)
..++.|.|+|.|-. +. ....++.|.|.-.- | .-+.|..|. .... .-...+
T Consensus 29 ~~i~~V~iVG~V~~---~~---~~~~~~~~~ldD~T----------G-----------~~I~~~~W~-~~~~~~~~~~~~ 80 (132)
T 3kdf_D 29 VEISQVTIVGIIRH---AE---KAPTNIVYKIDDMT----------A-----------APMDVRQWV-DTDDTSSENTVV 80 (132)
T ss_dssp EECCEEEEEEEEEE---EE---ECSSEEEEEEECSS----------S-----------SCEEEEEEC----------CCC
T ss_pred EEEEEEEEEEEEEE---EE---EcCCeEEEEEECCC----------C-----------CEEEEEEEc-cCCCcccccccc
Confidence 46899999999987 22 22456667664321 1 036777775 2221 235679
Q ss_pred CCCCEEEEEEEeEe
Q 029088 157 VPGSTIYVEGNLEQ 170 (199)
Q Consensus 157 ~KG~~V~VeGrL~~ 170 (199)
..|+-|.|.|.|+.
T Consensus 81 ~~g~yVrV~G~l~~ 94 (132)
T 3kdf_D 81 PPETYVKVAGHLRS 94 (132)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEe
Confidence 99999999999887
No 48
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=45.37 E-value=16 Score=28.23 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=42.6
Q ss_pred ceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCC---CCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 82 FKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLEN---ENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~---ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
.-+-|+|.|.+.+ ..++. |+|-+..+-.|+..-.- +.+..|.-....--++|++|. ..|.++.++++.
T Consensus 15 ~F~Dl~~qVv~~~----~~~~~----~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd-~ha~~ar~~lk~ 85 (143)
T 4hik_A 15 QRCSFYAQVIKTW----YSDKN----FTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWD-EHDFYCRNYIKE 85 (143)
T ss_dssp CEEEEEEEEEEEE----ECSSC----EEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECH-HHHHHHTTTCCT
T ss_pred CeEEEEEEEEEEE----cCCCe----EEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEEC-cHHHHHHhhCCC
Confidence 4456888888733 11233 55666555443321100 111123211122246999995 899999999999
Q ss_pred CCEEEE
Q 029088 159 GSTIYV 164 (199)
Q Consensus 159 G~~V~V 164 (199)
|+-|.+
T Consensus 86 Gd~v~L 91 (143)
T 4hik_A 86 GDYVVM 91 (143)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999975
No 49
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=44.66 E-value=83 Score=22.44 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=48.9
Q ss_pred cCccCceEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcC
Q 029088 77 LDPGIFKAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHL 156 (199)
Q Consensus 77 ~~~~~N~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L 156 (199)
|.++...|.++|.|-. +....+|..+....|+ |. |--+++++|++. ....+
T Consensus 11 l~~~~~~v~v~~~V~~---~~~~~~~~~~~~~~l~------De----------------TG~I~~t~W~~~----~~~~~ 61 (109)
T 2kbn_A 11 IVENGQWANLKAKVIQ---LWENTHESISQVGLLG------DE----------------TGIIKFTIWKNA----ELPLL 61 (109)
T ss_dssp CCSTTCEEEEEEEEEE---EEECCCSSEEEEEEEE------CT----------------TCCEEEEEEGGG----CCCCC
T ss_pred CCCCCCcEEEEEEEEE---eEcCCCCeEEEEEEEE------CC----------------CCeEEEEEECcc----ccccc
Confidence 4445677889999877 2233344444332222 11 224899999722 33579
Q ss_pred CCCCEEEEE-EEeEeeeeeCCCCCeEEEEEEEEEEeCCcEEe
Q 029088 157 VPGSTIYVE-GNLEQKVFNDPITGLVRRIREIAIRRNGTYLI 197 (199)
Q Consensus 157 ~KG~~V~Ve-GrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~f 197 (199)
+.|+.|.|. |..+. |. | ..+|.+.+-+.|..
T Consensus 62 ~~G~~V~i~n~~v~~--~~----G----~~~L~v~~~~~I~~ 93 (109)
T 2kbn_A 62 EQGESYLLRSVVVGE--YN----D----RFQVQVNKNSSIEK 93 (109)
T ss_dssp CTTCEEEEEEEEEEE--ET----T----EEEEEECSSSEEEE
T ss_pred CCCCEEEEEEEEEEE--EC----C----EEEEEECCceEEEE
Confidence 999999999 66654 53 3 34555555555543
No 50
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=38.57 E-value=65 Score=26.82 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=30.7
Q ss_pred eEEEEEEeCcchHHHHhhcCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEE
Q 029088 137 QWHRVSVYPERLGGVVMKHLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIR 190 (199)
Q Consensus 137 ~w~~V~~~g~~lAe~v~~~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~ 190 (199)
.-+.|.+.+ .+.+.+++||.|.|.|-+.... .. +...+.+.|.|.
T Consensus 198 rsi~V~l~~-----dLvd~~~PGDrV~vtGI~~~~~-~~---~~~~~~~~l~a~ 242 (279)
T 1ltl_A 198 RQITVVLED-----DLVDTLTPGDIVRVTGTLRTVR-DE---RTKRFKNFIYGN 242 (279)
T ss_dssp CEEEEEEEG-----GGTTCCCTTCEEEEEEEEEEEE-ET---TTTEEEEEEEEE
T ss_pred eEEEEEEcc-----cccCccCCCCEEEEEEEEEEee-CC---CCceEEEEEEEE
Confidence 455666665 2567899999999999998773 32 333455666665
No 51
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=38.55 E-value=91 Score=21.40 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=22.1
Q ss_pred CCCCCEEEEEEEeEeeeeeCCCCCeEEEEE--EEEEEeCCcEE
Q 029088 156 LVPGSTIYVEGNLEQKVFNDPITGLVRRIR--EIAIRRNGTYL 196 (199)
Q Consensus 156 L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~--eI~v~~~g~l~ 196 (199)
+.-|+.|.|+|+.... .+ +|...... .|.-=++|+|+
T Consensus 67 i~~Gd~Vvv~~~~~~~---~~-~g~~~~~~~~~vf~~~dGkI~ 105 (112)
T 3f14_A 67 IQNENQIVIEGKCRYF---DA-EGKEAFVSYCDIYRFENDTIK 105 (112)
T ss_dssp EECSSEEEEEEEEEEE---CT-TSCEEEEEEEEEEEEETTEEE
T ss_pred EEeCCEEEEEEEEEEE---eC-CCCEEEEEEEEEEEEeCCEEE
Confidence 4469999999998643 34 56543222 22222488886
No 52
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur genomics, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum}
Probab=34.76 E-value=1.4e+02 Score=22.06 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=20.1
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEE-EeCCcEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAI-RRNGTYL 196 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v-~~~g~l~ 196 (199)
-+..||.|.+++++....-.+...|......++.+ +.+|+++
T Consensus 91 PV~~GD~L~~~~~v~~~~~~~s~~~~~~v~~~~~~~nq~Ge~V 133 (154)
T 3exz_A 91 PTRPGDELHVETTVLAITPSKSRPDRAIVTCQSDTLNQRGEVV 133 (154)
T ss_dssp CCCTTCEEEEEEEEEEEEECSSCTTEEEEEEEEEEECTTSCEE
T ss_pred CCCCCCEEEEEEEEEEEEecccCCCceEEEEEEEEEeCCCCEE
Confidence 35667777777766544332210233333444444 2355554
No 53
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=31.76 E-value=1.2e+02 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCCCEEEEEEEeEeeeeeCCCCCeEEEEE---EEEEEeCCcEEe
Q 029088 157 VPGSTIYVEGNLEQKVFNDPITGLVRRIR---EIAIRRNGTYLI 197 (199)
Q Consensus 157 ~KG~~V~VeGrL~~~~~~d~~dG~~r~~~---eI~v~~~g~l~f 197 (199)
.-|+.|.|+|+..-. .+ +|+..... -+.+ ++|+|+-
T Consensus 78 ~~gd~v~v~~~~~~~---~~-~G~~~~~~~~~v~~~-~dGkI~~ 116 (132)
T 3ebt_A 78 ESGERIVVLGTRRVT---AV-NGRSATLKFVHVWRF-ENGRAVT 116 (132)
T ss_dssp EETTEEEEEEEEEEE---ET-TSCEEEEEEEEEEEE-ETTEEEE
T ss_pred EeCCEEEEEEEEEEE---eC-CCCEEeeeEEEEEEE-ECCEEEE
Confidence 458999999887632 34 78754322 2223 4888863
No 54
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=27.63 E-value=53 Score=26.58 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=40.8
Q ss_pred eEEEEEEeCCCCeEEEeCCCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCCCCEE
Q 029088 83 KAILVGQVGQSPVQKKLKSGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVPGSTI 162 (199)
Q Consensus 83 ~viLiG~Ig~dPe~k~~~~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~KG~~V 162 (199)
..+++|-|...-+.+.+.+|+.+..+.|..=.. ....+.+-+||+ ..+. ...+..|+.|
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~-------------------~~~~V~lfLFg~-a~~~-~~k~~~G~Vi 115 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKD-------------------LDKYISLFLFGD-VHKE-HWKTDQGTVI 115 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSSS-------------------TTCCEEEEECHH-HHHH-HTTCCTTEEE
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecCC-------------------CCcEEEEEEech-HHHH-hcCcCCceEE
Confidence 567778888877777777888777666653211 112578999983 3343 4469999998
Q ss_pred EEEEEeEeeeeeCCCCC
Q 029088 163 YVEGNLEQKVFNDPITG 179 (199)
Q Consensus 163 ~VeGrL~~~~~~d~~dG 179 (199)
.|-- ...|..+ +|
T Consensus 116 aiLN---P~i~~~~-~~ 128 (200)
T 3ebe_A 116 GLLN---ANPMKPK-EG 128 (200)
T ss_dssp EEES---CEECCCC-TT
T ss_pred EEEC---CEEccCC-CC
Confidence 7743 3345544 44
No 55
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=25.42 E-value=65 Score=19.89 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=18.9
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLV 181 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~ 181 (199)
.+++||.|.|.......-|....+|+.
T Consensus 24 s~~~Gd~i~v~~~~~~~Ww~g~~~g~~ 50 (60)
T 2gnc_A 24 SFKKGASLLLYHRASEDWWEGRHNGID 50 (60)
T ss_dssp CBCTTCEEEEEEEEETTEEEEEETTEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEECCeE
Confidence 489999999999876555554334543
No 56
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=24.88 E-value=52 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=19.8
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRR 183 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~ 183 (199)
.+++||.|.|.......-|....+|+...
T Consensus 21 sf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~ 49 (67)
T 2bzy_A 21 ALEVGDIVKVTRMNINGQWEGEVNGRKGL 49 (67)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEETTEEEE
T ss_pred ccCCCCEEEEEEecCCCeEEEEeCCcEEE
Confidence 48999999998886555565443555443
No 57
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=24.13 E-value=1.8e+02 Score=20.30 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=23.1
Q ss_pred cCCCCCEEEEEEEeEee----eeeCCCCCeE-EEEEEEEEEeCCcEEe
Q 029088 155 HLVPGSTIYVEGNLEQK----VFNDPITGLV-RRIREIAIRRNGTYLI 197 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~----~~~d~~dG~~-r~~~eI~v~~~g~l~f 197 (199)
.|++|+.|-|.|.+... +|..+ +|.. .+..-++++.-|.|.+
T Consensus 12 ~L~~g~~v~i~~~V~~~~~~~~~~~k-~G~~~~~~~~~l~D~TG~I~~ 58 (115)
T 2k50_A 12 KLEEGAETPVTGRVMKISSPRTFTTR-KGREGKLANVIIADDTGELRA 58 (115)
T ss_dssp TCCTTCEEEEEEEEEEECCCEECCCT-TSSCCEEEEEEEEETTEEEEE
T ss_pred HCCCCCEeEEEEEEEECCCceEEEcC-CCCEEEEEEEEEEeCCCeEEE
Confidence 46678888888777554 44455 6632 2222333444555543
No 58
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=23.15 E-value=2.3e+02 Score=22.39 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=41.0
Q ss_pred ceEEEEEEeCCCCeEEEe--C-CCcEEEEEEEEeCCeecCCCCCCCCCCccccccCceeEEEEEEeCcchHHHHhhcCCC
Q 029088 82 FKAILVGQVGQSPVQKKL--K-SGRTVTLFSLGTGGIRNNRRPLENENPTEYANRCAVQWHRVSVYPERLGGVVMKHLVP 158 (199)
Q Consensus 82 N~viLiG~Ig~dPe~k~~--~-~G~~v~~FsVAv~~~~~~r~~g~~ge~~e~~d~~~t~w~~V~~~g~~lAe~v~~~L~K 158 (199)
..|-++|.|..--+++.. + +|+......+... |. ...-++|++|| ..|+.+. ...
T Consensus 139 ~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~----D~---------------sg~~i~~tLWg-~~a~~~~--~~~ 196 (246)
T 1jmc_A 139 SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLM----DT---------------SGKVVTATLWG-EDADKFD--GSR 196 (246)
T ss_dssp CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEE----CT---------------TCCEEEEEEEH-HHHHHCC--CTT
T ss_pred CceeEEEEEEEecCeEEEEEecCCCccEEEEEEEE----CC---------------CCCEEEEEEEc-hhhhhcc--cCC
Confidence 357788988765444332 2 4665444444332 11 11258999998 7888765 577
Q ss_pred CCEEEEEEEeEeeee
Q 029088 159 GSTIYVEGNLEQKVF 173 (199)
Q Consensus 159 G~~V~VeGrL~~~~~ 173 (199)
|+.|.+.|- +...|
T Consensus 197 ~~vv~i~~~-~v~~f 210 (246)
T 1jmc_A 197 QPVLAIKGA-RVSDF 210 (246)
T ss_dssp CCEEEEEEE-EEECT
T ss_pred CCEEEEEEE-EEEec
Confidence 887766664 44556
No 59
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=22.93 E-value=2.1e+02 Score=20.35 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.9
Q ss_pred CCCCC-EEEEEEEe
Q 029088 156 LVPGS-TIYVEGNL 168 (199)
Q Consensus 156 L~KG~-~V~VeGrL 168 (199)
|+.|+ .|-+.|.+
T Consensus 8 L~~~~~~v~~~~~V 21 (119)
T 1o7i_A 8 LKPNMESVNVTVRV 21 (119)
T ss_dssp CCTTCSSEEEEEEE
T ss_pred CcCCCCcEEEEEEE
Confidence 44443 34444444
No 60
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=22.05 E-value=66 Score=19.64 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=17.8
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLV 181 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~ 181 (199)
.+++||.|.|.......-|....+|+.
T Consensus 20 s~~~Gd~i~v~~~~~~~Ww~g~~~g~~ 46 (58)
T 1zx6_A 20 GLKPGDKVQLLEKLSPEWYKGSCNGRT 46 (58)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEETTEE
T ss_pred cCCCCCEEEEEEecCCCEEEEEECCcE
Confidence 389999999988765444543334443
No 61
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.61 E-value=59 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=18.2
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLV 181 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~ 181 (199)
.+++||.|.|.......-|....+|+.
T Consensus 23 s~~~Gd~i~v~~~~~~~Ww~g~~~g~~ 49 (62)
T 1k4u_S 23 EFQEGDIILVLSKVNEEWLEGESKGKV 49 (62)
T ss_dssp CBCSSCEEEEEEESSSSCEEEECSSCE
T ss_pred cCCCCCEEEEEEeCCCCEEEEEECCcE
Confidence 389999999998865555544334443
No 62
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=21.15 E-value=2.1e+02 Score=19.97 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=21.3
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEEEEEEEEEEeCCcEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVRRIREIAIRRNGTYL 196 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r~~~eI~v~~~g~l~ 196 (199)
-+..||.|.+++++....... +. +..++.+..+|++.
T Consensus 72 Pv~~Gd~l~~~a~v~~~~~~~---~~--~~v~~~~~~~g~~v 108 (121)
T 2f41_A 72 QVKQGERVVAKAKVTAVEKEK---GR--TVVEVNSYVGEEIV 108 (121)
T ss_dssp CCBTTCEEEEEEEEEEECSSS---SC--EEEEEEEEETTEEE
T ss_pred CcCCCCEEEEEEEEEEEEccC---CE--EEEEEEEEECCEEE
Confidence 366789999998887543322 22 23344444556654
No 63
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=20.96 E-value=68 Score=20.70 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=19.2
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVR 182 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r 182 (199)
.++|||.|.|.......-|....+|+..
T Consensus 31 s~~~Gd~i~v~~~~~~~W~~g~~~g~~G 58 (73)
T 3c0c_A 31 GFREGDLITLTNQIDENWYEGMLHGQSG 58 (73)
T ss_dssp CBCTTCEEEEEEECSSSEEEEEETTEEE
T ss_pred cCcCCCEEEEEEecCCCEEEEEECCCEE
Confidence 3899999999987655555543355543
No 64
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=20.56 E-value=69 Score=20.61 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=19.3
Q ss_pred cCCCCCEEEEEEEeEeeeeeCCCCCeEE
Q 029088 155 HLVPGSTIYVEGNLEQKVFNDPITGLVR 182 (199)
Q Consensus 155 ~L~KG~~V~VeGrL~~~~~~d~~dG~~r 182 (199)
.+++||.|.|.......-|....+|+..
T Consensus 21 sf~~Gd~i~v~~~~~~~Ww~g~~~g~~G 48 (68)
T 2ew3_A 21 GFKEGDIITLTNQIDENWYEGMIHGESG 48 (68)
T ss_dssp CBCTTCEEEEEEESSSSEEEEEETTEEE
T ss_pred CCCCCCEEEEEEecCCCEEEEEECCcEE
Confidence 4899999999987655555543355544
Done!