BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029089
         (199 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NCV|A Chain A, Ngol
 pdb|3NCV|B Chain B, Ngol
          Length = 220

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 73  PVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNML 131
           PV F       AA+         F  +L D+ G+    +R  P++LG+  V S+A ++L
Sbjct: 84  PVTFAASHEECAALADHAETLAGFGLELSDMGGNT-LAVRAAPVMLGKSDVVSLARDVL 141


>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
 pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
          Length = 902

 Score = 27.3 bits (59), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 78  KQLLFAAAIMP-IFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR 120
           ++LLF   + P + N     +KD+ D+EG+K+ G+R    +L R
Sbjct: 302 EELLFGGKLSPELLNTGRFETKDISDIEGEKD-GIRKAREVLMR 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,160,174
Number of Sequences: 62578
Number of extensions: 183007
Number of successful extensions: 306
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.5 bits)