Query 029089
Match_columns 199
No_of_seqs 174 out of 1106
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.1E-47 4.5E-52 323.7 20.8 196 2-197 80-275 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.6E-41 5.6E-46 292.8 21.9 192 2-197 110-301 (308)
3 PRK07419 1,4-dihydroxy-2-napht 99.9 7E-24 1.5E-28 183.6 20.0 158 2-171 109-266 (304)
4 TIGR02235 menA_cyano-plnt 1,4- 99.9 1.9E-23 4.1E-28 179.5 20.1 158 2-171 96-253 (285)
5 PRK13387 1,4-dihydroxy-2-napht 99.9 1.2E-22 2.6E-27 176.9 20.6 164 2-171 104-281 (317)
6 PRK13595 ubiA prenyltransferas 99.9 5.2E-23 1.1E-27 176.5 17.0 170 3-197 109-278 (292)
7 TIGR00751 menA 1,4-dihydroxy-2 99.9 1.6E-22 3.5E-27 173.6 20.1 159 2-171 93-256 (284)
8 PLN02922 prenyltransferase 99.9 4.2E-22 9.1E-27 173.3 22.8 156 11-170 121-280 (315)
9 PRK05951 ubiA prenyltransferas 99.9 3.3E-21 7.2E-26 166.4 22.4 182 3-196 107-288 (296)
10 TIGR01476 chlor_syn_BchG bacte 99.9 5.4E-21 1.2E-25 163.8 19.8 134 2-145 95-228 (283)
11 PRK12872 ubiA prenyltransferas 99.9 6.1E-21 1.3E-25 163.2 19.6 178 3-190 94-276 (285)
12 COG1575 MenA 1,4-dihydroxy-2-n 99.9 9.4E-21 2E-25 162.3 20.3 149 2-162 111-259 (303)
13 TIGR02056 ChlG chlorophyll syn 99.9 1.8E-20 3.9E-25 162.5 19.0 128 13-150 128-255 (306)
14 PRK06080 1,4-dihydroxy-2-napht 99.9 6.2E-20 1.4E-24 157.8 22.1 137 2-149 103-239 (293)
15 PRK13105 ubiA prenyltransferas 99.9 6.7E-20 1.4E-24 157.2 20.5 127 3-140 96-222 (282)
16 PRK13591 ubiA prenyltransferas 99.8 6.1E-20 1.3E-24 158.3 17.6 135 2-148 111-249 (307)
17 PRK07566 bacteriochlorophyll/c 99.8 6.8E-19 1.5E-23 153.2 19.7 130 2-141 122-252 (314)
18 PRK12392 bacteriochlorophyll c 99.8 7.1E-19 1.5E-23 154.0 19.1 124 13-146 125-248 (331)
19 PLN00012 chlorophyll synthetas 99.8 6.9E-18 1.5E-22 149.9 20.8 117 13-139 197-313 (375)
20 PRK12884 ubiA prenyltransferas 99.8 2.9E-17 6.4E-22 140.3 19.3 129 2-145 94-222 (279)
21 PF01040 UbiA: UbiA prenyltran 99.8 2E-17 4.3E-22 138.1 15.5 112 2-125 82-193 (257)
22 PRK12882 ubiA prenyltransferas 99.7 1.1E-16 2.3E-21 136.8 17.7 124 2-139 95-218 (276)
23 PRK09573 (S)-2,3-di-O-geranylg 99.7 1.4E-15 3.1E-20 130.1 18.2 122 2-139 94-215 (279)
24 PRK12883 ubiA prenyltransferas 99.7 2.5E-15 5.3E-20 128.5 19.0 115 2-132 94-208 (277)
25 PRK12875 ubiA prenyltransferas 99.7 1.2E-15 2.7E-20 131.0 16.8 107 20-139 120-226 (282)
26 TIGR01475 ubiA_other putative 99.7 1.9E-15 4.1E-20 129.6 17.8 163 4-182 97-259 (282)
27 PRK12847 ubiA 4-hydroxybenzoat 99.7 2.3E-15 4.9E-20 129.3 17.5 168 2-188 104-272 (285)
28 COG0382 UbiA 4-hydroxybenzoate 99.7 5.9E-15 1.3E-19 126.9 18.4 174 2-193 106-279 (289)
29 PRK12888 ubiA prenyltransferas 99.6 3.4E-14 7.4E-19 122.2 19.6 163 4-184 100-263 (284)
30 TIGR01474 ubiA_proteo 4-hydrox 99.6 2E-14 4.2E-19 123.4 17.9 118 2-134 99-216 (281)
31 PRK13106 ubiA prenyltransferas 99.6 4.7E-14 1E-18 122.2 16.5 171 5-189 111-283 (300)
32 PRK12886 ubiA prenyltransferas 99.6 1.5E-13 3.3E-18 118.5 18.7 128 4-146 103-230 (291)
33 PRK12874 ubiA prenyltransferas 99.6 2.8E-13 6E-18 116.9 18.0 118 3-135 107-224 (291)
34 PRK12895 ubiA prenyltransferas 99.6 1.6E-13 3.5E-18 118.1 16.1 169 2-187 96-266 (286)
35 PLN02809 4-hydroxybenzoate non 99.5 3.7E-13 8.1E-18 116.0 17.4 169 2-188 104-273 (289)
36 PRK12878 ubiA 4-hydroxybenzoat 99.5 4.4E-13 9.4E-18 116.8 17.6 163 2-183 131-293 (314)
37 PRK12870 ubiA 4-hydroxybenzoat 99.5 2.1E-13 4.5E-18 117.6 14.9 169 2-189 105-276 (290)
38 PRK12848 ubiA 4-hydroxybenzoat 99.5 8.6E-13 1.9E-17 113.3 17.9 168 2-188 101-269 (282)
39 PRK12876 ubiA prenyltransferas 99.5 3.6E-12 7.9E-17 110.2 18.3 170 4-185 108-279 (300)
40 PRK12869 ubiA protoheme IX far 99.5 9.1E-12 2E-16 106.8 20.4 119 3-134 96-215 (279)
41 PRK12871 ubiA prenyltransferas 99.5 8.5E-12 1.9E-16 108.0 19.4 108 13-137 123-234 (297)
42 PRK13592 ubiA prenyltransferas 99.4 9E-12 2E-16 107.2 14.5 111 20-138 115-233 (299)
43 TIGR01473 cyoE_ctaB protoheme 99.4 1.1E-10 2.5E-15 99.9 19.3 118 10-142 103-222 (280)
44 PRK04375 protoheme IX farnesyl 99.3 2.6E-10 5.5E-15 98.6 18.3 97 25-135 127-224 (296)
45 PRK12873 ubiA prenyltransferas 99.2 4.1E-10 8.9E-15 97.3 16.2 154 20-189 124-280 (294)
46 PRK13362 protoheme IX farnesyl 99.2 1.2E-09 2.7E-14 94.9 19.2 94 25-131 130-223 (306)
47 KOG4581 Predicted membrane pro 98.4 1.3E-07 2.9E-12 78.6 2.5 155 25-193 187-342 (359)
48 PLN02776 prenyltransferase 97.8 0.0037 8E-08 55.3 19.1 95 20-129 106-204 (341)
49 PRK08238 hypothetical protein; 97.4 0.011 2.3E-07 54.7 16.1 93 2-111 285-377 (479)
50 PRK12324 phosphoribose diphosp 96.9 0.0049 1.1E-07 53.5 8.2 55 2-62 105-159 (295)
51 COG0109 CyoE Polyprenyltransfe 96.6 0.043 9.4E-07 47.7 11.4 92 25-130 135-227 (304)
52 KOG1381 Para-hydroxybenzoate-p 94.8 0.14 3.1E-06 44.1 7.5 98 88-189 234-332 (353)
53 COG0382 UbiA 4-hydroxybenzoate 93.9 0.56 1.2E-05 40.3 9.6 52 82-133 51-106 (289)
54 PRK12884 ubiA prenyltransferas 93.9 0.84 1.8E-05 38.8 10.6 49 85-134 44-95 (279)
55 PRK13592 ubiA prenyltransferas 93.5 3.5 7.6E-05 36.0 13.6 55 79-134 47-104 (299)
56 PLN02809 4-hydroxybenzoate non 93.0 1.6 3.4E-05 37.8 10.8 44 85-128 52-99 (289)
57 PRK11383 hypothetical protein; 92.2 1.7 3.6E-05 33.8 8.8 84 17-107 46-132 (145)
58 PRK12324 phosphoribose diphosp 92.0 0.92 2E-05 39.4 8.1 48 87-134 55-106 (295)
59 PRK13595 ubiA prenyltransferas 92.0 4.8 0.0001 35.0 12.4 48 85-133 54-104 (292)
60 PRK12882 ubiA prenyltransferas 91.5 5 0.00011 34.1 12.1 49 85-134 45-96 (276)
61 TIGR02056 ChlG chlorophyll syn 91.5 1.9 4.1E-05 37.5 9.6 52 86-137 62-115 (306)
62 PRK12872 ubiA prenyltransferas 90.5 2.7 5.7E-05 35.8 9.5 27 85-111 43-69 (285)
63 PF01040 UbiA: UbiA prenyltran 89.8 5.6 0.00012 32.6 10.6 36 87-122 32-68 (257)
64 PRK09573 (S)-2,3-di-O-geranylg 89.2 3.9 8.5E-05 34.8 9.5 49 85-134 44-95 (279)
65 PRK08238 hypothetical protein; 89.1 3.6 7.9E-05 38.1 9.8 51 85-135 233-287 (479)
66 PRK12875 ubiA prenyltransferas 88.5 8.2 0.00018 33.3 11.0 19 95-113 62-80 (282)
67 PRK12869 ubiA protoheme IX far 88.3 6.6 0.00014 33.6 10.3 50 85-134 43-96 (279)
68 PRK12883 ubiA prenyltransferas 87.6 13 0.00028 31.6 11.6 46 88-134 47-95 (277)
69 PRK12887 ubiA tocopherol phyty 87.4 5.2 0.00011 34.9 9.2 38 96-134 71-111 (308)
70 TIGR01476 chlor_syn_BchG bacte 87.0 3.2 7E-05 35.4 7.6 46 88-134 48-96 (283)
71 TIGR01475 ubiA_other putative 85.9 3.9 8.5E-05 34.9 7.6 45 85-129 43-91 (282)
72 PRK12392 bacteriochlorophyll c 84.6 9.7 0.00021 33.6 9.6 46 93-139 65-113 (331)
73 PRK12873 ubiA prenyltransferas 84.4 5.9 0.00013 34.4 8.0 49 85-133 51-103 (294)
74 PRK12870 ubiA 4-hydroxybenzoat 84.4 14 0.00029 31.9 10.2 49 86-134 54-106 (290)
75 PRK04375 protoheme IX farnesyl 84.3 20 0.00043 30.9 11.2 50 85-134 51-104 (296)
76 PRK12847 ubiA 4-hydroxybenzoat 84.2 6 0.00013 33.8 7.9 48 87-134 54-105 (285)
77 PLN00012 chlorophyll synthetas 83.8 12 0.00026 33.6 9.9 46 87-133 132-180 (375)
78 TIGR01474 ubiA_proteo 4-hydrox 83.3 6.9 0.00015 33.5 7.9 48 87-134 49-100 (281)
79 PRK13591 ubiA prenyltransferas 82.8 24 0.00051 31.0 11.0 28 88-116 68-95 (307)
80 TIGR00751 menA 1,4-dihydroxy-2 81.9 33 0.00071 29.6 13.4 57 86-142 36-98 (284)
81 PRK13362 protoheme IX farnesyl 81.7 12 0.00026 32.6 8.9 49 86-134 55-107 (306)
82 PRK07566 bacteriochlorophyll/c 80.5 10 0.00022 33.0 8.1 45 90-134 77-123 (314)
83 PRK12871 ubiA prenyltransferas 80.1 39 0.00084 29.3 11.7 44 91-135 55-111 (297)
84 PRK05951 ubiA prenyltransferas 80.1 38 0.00082 29.2 11.8 49 86-134 48-103 (296)
85 TIGR01473 cyoE_ctaB protoheme 79.9 9.9 0.00022 32.4 7.7 50 85-134 42-95 (280)
86 PRK12895 ubiA prenyltransferas 78.1 16 0.00034 31.6 8.4 49 86-134 45-97 (286)
87 PRK12848 ubiA 4-hydroxybenzoat 77.8 13 0.00028 31.8 7.8 47 88-134 52-102 (282)
88 PLN02878 homogentisate phytylt 76.4 11 0.00024 32.6 6.9 46 88-134 33-81 (280)
89 PLN02776 prenyltransferase 76.3 36 0.00077 30.3 10.2 49 85-133 36-88 (341)
90 cd00867 Trans_IPPS Trans-Isopr 75.1 1.4 3.1E-05 36.0 1.1 39 89-127 157-205 (236)
91 PRK12886 ubiA prenyltransferas 74.8 17 0.00038 31.3 7.8 42 85-126 49-94 (291)
92 PRK07419 1,4-dihydroxy-2-napht 74.2 59 0.0013 28.3 11.4 53 86-139 56-111 (304)
93 PRK12878 ubiA 4-hydroxybenzoat 73.0 21 0.00045 31.2 7.9 47 85-131 79-129 (314)
94 PRK12888 ubiA prenyltransferas 72.7 61 0.0013 27.8 11.8 44 85-128 46-93 (284)
95 TIGR02235 menA_cyano-plnt 1,4- 71.5 66 0.0014 27.7 12.0 53 86-139 43-98 (285)
96 PRK12874 ubiA prenyltransferas 71.0 30 0.00065 29.8 8.4 43 88-130 57-103 (291)
97 PRK12876 ubiA prenyltransferas 69.1 29 0.00063 30.3 7.9 46 82-127 51-100 (300)
98 PRK13106 ubiA prenyltransferas 68.4 80 0.0017 27.4 11.5 43 85-127 56-102 (300)
99 PF09928 DUF2160: Predicted sm 64.9 48 0.001 23.6 7.5 64 93-161 20-83 (88)
100 PF05360 YiaAB: yiaA/B two hel 63.5 36 0.00079 21.7 6.6 30 73-102 24-53 (53)
101 PRK10581 geranyltranstransfera 61.1 4.1 8.8E-05 35.4 1.1 46 88-133 213-269 (299)
102 PRK13387 1,4-dihydroxy-2-napht 57.4 1.3E+02 0.0029 26.2 14.1 56 88-143 49-110 (317)
103 PRK13105 ubiA prenyltransferas 54.2 1.4E+02 0.0031 25.7 11.0 26 91-116 47-72 (282)
104 COG5477 Predicted small integr 52.5 80 0.0017 22.4 6.2 64 95-162 30-93 (97)
105 cd00385 Isoprenoid_Biosyn_C1 I 40.7 7 0.00015 30.7 -0.7 34 89-122 151-186 (243)
106 PRK06080 1,4-dihydroxy-2-napht 39.5 2.4E+02 0.0051 23.9 14.1 51 85-135 45-101 (293)
107 PLN02922 prenyltransferase 38.6 2.7E+02 0.0058 24.3 12.5 49 85-134 58-109 (315)
108 COG0142 IspA Geranylgeranyl py 34.2 12 0.00025 32.9 -0.4 36 90-125 206-252 (322)
109 PF00348 polyprenyl_synt: Poly 33.8 9.8 0.00021 32.0 -0.9 34 90-123 178-222 (260)
110 CHL00151 preA prenyl transfera 33.0 13 0.00029 32.5 -0.2 33 90-122 207-250 (323)
111 cd00685 Trans_IPPS_HT Trans-Is 32.0 15 0.00032 30.8 -0.1 30 90-119 181-221 (259)
112 TIGR02748 GerC3_HepT heptapren 31.0 13 0.00029 32.4 -0.5 32 90-121 202-244 (319)
113 PF12046 DUF3529: Protein of u 30.8 1.3E+02 0.0028 24.2 5.1 78 96-173 54-134 (173)
114 COG0109 CyoE Polyprenyltransfe 29.0 4E+02 0.0087 23.4 9.5 50 85-134 59-112 (304)
115 COG1575 MenA 1,4-dihydroxy-2-n 28.9 4E+02 0.0087 23.4 11.2 50 85-134 51-106 (303)
116 PF09796 QCR10: Ubiquinol-cyto 28.2 58 0.0012 21.8 2.3 32 15-46 17-51 (64)
117 PF13829 DUF4191: Domain of un 26.5 2.9E+02 0.0064 23.1 6.7 48 125-172 29-78 (224)
118 TIGR02749 prenyl_cyano solanes 26.5 26 0.00057 30.6 0.5 33 90-122 206-249 (322)
119 smart00279 HhH2 Helix-hairpin- 25.7 52 0.0011 19.2 1.6 26 101-127 8-33 (36)
120 PF06210 DUF1003: Protein of u 25.6 2.4E+02 0.0052 20.8 5.4 32 11-42 2-34 (108)
121 PF10361 DUF2434: Protein of u 25.0 3.6E+02 0.0078 23.6 7.1 12 183-194 179-190 (296)
122 PRK06099 F0F1 ATP synthase sub 24.7 3.1E+02 0.0068 20.7 7.5 11 175-185 65-75 (126)
123 PF05514 HR_lesion: HR-like le 24.0 3.5E+02 0.0075 21.0 9.7 37 152-188 88-124 (138)
124 COG0142 IspA Geranylgeranyl py 22.4 2.3E+02 0.005 24.7 5.7 54 81-135 69-122 (322)
125 KOG4016 Synaptic vesicle prote 22.3 4.7E+02 0.01 21.9 7.5 79 27-106 89-173 (233)
126 COG4149 ModC ABC-type molybdat 21.4 2.9E+02 0.0063 23.2 5.7 110 5-126 10-135 (225)
127 PLN02890 geranyl diphosphate s 21.4 26 0.00056 32.1 -0.5 29 90-118 300-339 (422)
128 PF15169 DUF4564: Domain of un 21.0 33 0.00072 27.9 0.1 71 35-116 12-82 (187)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.1e-47 Score=323.72 Aligned_cols=196 Identities=45% Similarity=0.836 Sum_probs=184.8
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..|++++++....+++++++||.++||+|+||+|++++.|....++..+++|+|.|+++..++++..++.+++
T Consensus 80 lg~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~ 159 (280)
T PLN02878 80 MSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLI 159 (280)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHH
Confidence 57888999998899998888889999999999999999999999999999999999999999999988887766777778
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+...++++++.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..++.++..+++..+.++|+++
T Consensus 160 ~~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l 239 (280)
T PLN02878 160 FATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGIL 239 (280)
T ss_pred HHHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88778899999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089 162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL 197 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~ 197 (199)
+..+|+|++++|.++++++++|||||||+||+||++
T Consensus 240 ~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l 275 (280)
T PLN02878 240 ASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFL 275 (280)
T ss_pred HHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.6e-41 Score=292.85 Aligned_cols=192 Identities=33% Similarity=0.577 Sum_probs=171.5
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..| +..+..++++.+++++||. ||+|+||+|+.++++++..+|..+++|.+.|.+... ..+..++..++
T Consensus 110 lal~la~~~~-~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~-~~~~~~~~~~~ 185 (308)
T PRK12887 110 LALILAALLG-PWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLL-GGSVLIPPTVW 185 (308)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCcHHHH
Confidence 5778888766 6777777899999999994 999999999999999999999988899888765332 33334556777
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+..+++++++.++++.||+||+||||+.|+||+|+++|+|++.+++..+..++|+..+..++.+........+.++|+++
T Consensus 186 l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~ 265 (308)
T PRK12887 186 LLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLIL 265 (308)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999999999999988888877777788999999
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089 162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL 197 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~ 197 (199)
+..+|+|.+++|.+|++++++|||||||+||+||++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~ 301 (308)
T PRK12887 266 LALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLL 301 (308)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985
No 3
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.92 E-value=7e-24 Score=183.56 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=128.7
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+++++..| |+++..+++|.+++++||. ||+|+|++| +||+.+++.+|..++.|.++. |++. ++...+
T Consensus 109 ~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~yv-~t~~------~~~~~~ 177 (304)
T PRK07419 109 GILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPLAVAAALYS-QTPS------WSLIPL 177 (304)
T ss_pred HHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-hcCC------CCHHHH
Confidence 5778887755 8889899999999999996 999999999 699999999998888888763 4422 344556
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
.......+.+.+++..||+||+|+||++|+||+|+++|+|++.+++..+...+|++.+.....+..++. ..+.+...++
T Consensus 178 ~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~-~Ll~ll~lPl 256 (304)
T PRK07419 178 AASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWT-TLLSLLSLPF 256 (304)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence 666778888999999999999999999999999999999999999999999999999888777645443 3455555555
Q ss_pred HHHHHHHhhh
Q 029089 162 AALLWRKAQT 171 (199)
Q Consensus 162 ~~~l~~~~~~ 171 (199)
+....++.++
T Consensus 257 ~~~~~~~~~~ 266 (304)
T PRK07419 257 AIKLIRLVRE 266 (304)
T ss_pred HHHHHHHHHH
Confidence 5544554444
No 4
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.92 E-value=1.9e-23 Score=179.50 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=128.0
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
.|+++.+..| |+++..++++.+++++||. ||+|+|++| +||+++++.+|..++.|.++ .|++ .++...+
T Consensus 96 ~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~y-vqt~------~~~~~~~ 164 (285)
T TIGR02235 96 GIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAALY-AQSQ------SFSLIPW 164 (285)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHHH-HhCC------cCcHHHH
Confidence 4777888766 8899999999999999996 999999999 69999999999877888776 3543 2344556
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
.......+.+.+++..||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....+..++ .....+...+.
T Consensus 165 l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~-~~ll~ll~lPl 243 (285)
T TIGR02235 165 KASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW-TTLLALASIPW 243 (285)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence 66778888999999999999999999999999999999999999999999999999888877764443 33445555555
Q ss_pred HHHHHHHhhh
Q 029089 162 AALLWRKAQT 171 (199)
Q Consensus 162 ~~~l~~~~~~ 171 (199)
+....++.++
T Consensus 244 ~~~~~~~~~~ 253 (285)
T TIGR02235 244 AVKLIRLVRQ 253 (285)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 5
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=176.90 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=125.7
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCC--------
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRP-------- 73 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~-------- 73 (199)
+|+++++..| |.++..++++.+++++||. ||+|+|++| +||+.++..+|..++.|.++. |++..+..
T Consensus 104 ~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv-~t~~~~~~~~~~~~~~ 178 (317)
T PRK13387 104 LGVYLCMNTS-WLLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGIFLLAVYI-NTNTITIESLLFQGEM 178 (317)
T ss_pred HHHHHHHHhc-HHHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHhcccc
Confidence 5788888766 8888889999999999996 999999999 799999999997777887663 44321110
Q ss_pred --CcchH----HHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcch
Q 029089 74 --VVFPK----QLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPF 147 (199)
Q Consensus 74 --~~~~~----~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~ 147 (199)
.+++. .+++......+.+.++++.||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+..+..+..
T Consensus 179 ~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~l 258 (317)
T PRK13387 179 FTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYI 258 (317)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 122356777888999999999999999999999999999999999999999999999998877777644
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 029089 148 LPCKIVAIIGHSALAALLWRKAQT 171 (199)
Q Consensus 148 ~~~~~~~~l~~~~~~~~l~~~~~~ 171 (199)
++. ..+.+...+++....++.++
T Consensus 259 p~~-~ll~ll~lP~~~~~~~~~~~ 281 (317)
T PRK13387 259 SPW-ALLSFLTLRKPISNLQSFQK 281 (317)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh
Confidence 433 34455555555544554444
No 6
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.91 E-value=5.2e-23 Score=176.45 Aligned_cols=170 Identities=20% Similarity=0.269 Sum_probs=125.4
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089 3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF 82 (199)
Q Consensus 3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (199)
|+++++..+ +.......++.+++++||. ||+|+|++|++++++. ..+|.+...|... .+.+ .+... +
T Consensus 109 ~l~la~~l~-~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~~~~~~~------~g~~--~~~~~-l 175 (292)
T PRK13595 109 LLYLALLLP-PAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPLALPALA------LGAP--VPWPP-L 175 (292)
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHHHHHHHH------cCCc--chHHH-H
Confidence 566777766 4444555678899999995 9999999999999997 6677766555321 1211 11221 1
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA 162 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (199)
....++..+++++||++|+||||+.|+||+|+++|+|++.+++..+++++- .+ ..... .+.+....+.|...+
T Consensus 176 --~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~--~~-~~~~~--~~~~~~~~~~~~~~~ 248 (292)
T PRK13595 176 --LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG--AL-LWPVS--RLTALALWLICGGMA 248 (292)
T ss_pred --HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH--HH-HHHhc--chHHHHHHHHHHHHH
Confidence 334566799999999999999999999999999999999999998888862 22 22222 223334667777777
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhhh
Q 029089 163 ALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLVL 197 (199)
Q Consensus 163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~~ 197 (199)
.-+| .|.+++++++.|..|+|.++.+..+.
T Consensus 249 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~ 278 (292)
T PRK13595 249 LALW-----RRPTPETAHRLYPLSIVTPWIVGTVA 278 (292)
T ss_pred HHHh-----cCCCHHHHhccchHHHHHhHHHHHHH
Confidence 5444 69999999999999999999887653
No 7
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.91 E-value=1.6e-22 Score=173.64 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=124.2
Q ss_pred chhhHHHHhcc-----HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcc
Q 029089 2 MGVAMGMMLRS-----PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVF 76 (199)
Q Consensus 2 lgl~l~~~~g~-----~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~ 76 (199)
+|+++.+..|. ++++..++++.+++++||. ||+|+|++| +||+.+++.+|...+.|.++. |++. +
T Consensus 93 ~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g~~yv-q~~~------~ 162 (284)
T TIGR00751 93 SGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLGTQYL-QAHR------V 162 (284)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHHHHHH-hcCC------C
Confidence 57777777663 2677888899999999996 999999999 699999999998888887763 4422 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 029089 77 PKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAII 156 (199)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l 156 (199)
+...++......+.+.+++..||+||+|+|+++|+||+|+++|+|++.+++..+...+|+..+.....+..++. ..+.+
T Consensus 163 ~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~-~ll~l 241 (284)
T TIGR00751 163 DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWW-CVLFL 241 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHH
Confidence 34444555667788899999999999999999999999999999999999999999999888877666544433 34444
Q ss_pred HHHHHHHHHHHHhhh
Q 029089 157 GHSALAALLWRKAQT 171 (199)
Q Consensus 157 ~~~~~~~~l~~~~~~ 171 (199)
...+++...+++.++
T Consensus 242 l~lPl~~~~~~~~~~ 256 (284)
T TIGR00751 242 LAAPLLLKAAGPVRS 256 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455444554444
No 8
>PLN02922 prenyltransferase
Probab=99.91 E-value=4.2e-22 Score=173.27 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhC-CCC---cchHHHHHHHHH
Q 029089 11 RSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLG-RPV---VFPKQLLFAAAI 86 (199)
Q Consensus 11 g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~-~~~---~~~~~~~~~~~~ 86 (199)
++|++++.+++|++++++||. ||+|+|++| +||+.+++.+|..++.|.|+ .|++..+ .+. .++...+...++
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l~v~g~y~-~~~~~~~~~~~~~~~~~~~~~l~slp 196 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPLATTAFYL-ALASGAGGSEMAILPLTPTVLSASVL 196 (315)
T ss_pred cChHHHHHHHHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHHHHHHHHH-HhcccccccccccccccHHHHHHHHH
Confidence 568899999999999999996 999999999 69999999999777788765 3543111 001 234556677788
Q ss_pred HHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLW 166 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 166 (199)
..+.+.++++.||+||+|+||++|+||+|+++|+|++.+++..+...+|+..+.....+..++......+...++.....
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~ 276 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVV 276 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998888777555433233333333343333
Q ss_pred HHhh
Q 029089 167 RKAQ 170 (199)
Q Consensus 167 ~~~~ 170 (199)
++.+
T Consensus 277 ~~~~ 280 (315)
T PLN02922 277 DFVE 280 (315)
T ss_pred HHHH
Confidence 4333
No 9
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=3.3e-21 Score=166.37 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=130.9
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089 3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF 82 (199)
Q Consensus 3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (199)
|+++....| +..+..++++.++++.||. ||+|+|++| +||+.+++.+|..++.|.++. +++. .+...+.
T Consensus 107 g~~l~~~~~-~~~l~l~~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~~~vlg~~~~-~~~~------~~~~~~~ 175 (296)
T PRK05951 107 GWSLVLDRG-IGAVTLALLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSHMLVMGLIYV-WLGN------LSSPNLL 175 (296)
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHHHHHHHHHHH-HhCc------ccHHHHH
Confidence 344554434 6777777889999999996 999999988 799999999998888888764 4322 2234445
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA 162 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (199)
......+++.++.+.||+||+|+||++|+||+|+++|+|++ +++......+|+..+.....+..++......+......
T Consensus 176 ~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~ 254 (296)
T PRK05951 176 AGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAY 254 (296)
T ss_pred HHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 55677778899999999999999999999999999999999 88888888899888877777644433222222222222
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHHHHHhhhh
Q 029089 163 ALLWRKAQTVDLTDPPSMQSFYMFIFKASGSTLV 196 (199)
Q Consensus 163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~~~~ 196 (199)
....++.+..|.++.+.+.+.++..=.++...++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 288 (296)
T PRK05951 255 ALCLWQLRKFPPDPDEATVQLFMLFGYLYILATL 288 (296)
T ss_pred HHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHH
Confidence 2234444555666666777777665555554443
No 10
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.88 E-value=5.4e-21 Score=163.84 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=102.6
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..++|.....+.++.+.+++||. ||+|+||++++|++.++..++.....+.+.. + + + .+...+
T Consensus 95 ~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~-~----~-~--~~~~~~ 164 (283)
T TIGR01476 95 AGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAI-F----A-P--LTWQSV 164 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHHH-h----C-C--CCHHHH
Confidence 355666666766646666778889999996 9999999998999999998874333332221 1 1 1 233444
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhc
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATS 145 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~ 145 (199)
+.....++++.+++..||+||+||||++|+||+|+++|+|++.+++..++..+|+..+......
T Consensus 165 ~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~ 228 (283)
T TIGR01476 165 VVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIW 228 (283)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667789999999999999999999999999999999999999999888887776544443
No 11
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.88 E-value=6.1e-21 Score=163.22 Aligned_cols=178 Identities=22% Similarity=0.259 Sum_probs=120.6
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHH
Q 029089 3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLL-RWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQL 80 (199)
Q Consensus 3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lppl-rlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (199)
|+++.....++..+..++++.++++.||. ||. |+||.|.+||++++..+| .+...+.+.+ + . .++...
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-~-----~--~~~~~~ 163 (285)
T PRK12872 94 GAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-Q-----L--TIFSLL 163 (285)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-c-----c--ccchHH
Confidence 34443333457777777888999999995 555 689999999999999999 4444454432 1 1 123344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 029089 81 LFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSA 160 (199)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (199)
+....+.++++++++++||+||+||||++|+||+|+++|+|++.+++..+...+++..+.....+..++......+.-..
T Consensus 164 ~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (285)
T PRK12872 164 LLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAY 243 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 45556777889999999999999999999999999999999999999999999988888666665433322222221111
Q ss_pred HHHHHHHHhhhcCCCC---chHHHHHHHHHHHH
Q 029089 161 LAALLWRKAQTVDLTD---PPSMQSFYMFIFKA 190 (199)
Q Consensus 161 ~~~~l~~~~~~~d~~~---~~~~~~~y~~~w~l 190 (199)
.........++.|.++ .....+.+|+.+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 276 (285)
T PRK12872 244 VLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLI 276 (285)
T ss_pred HHHHHHHHHhcccccchhHHHHHhHHHHHHHHH
Confidence 1111122222333332 33567777777654
No 12
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.88 E-value=9.4e-21 Score=162.30 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=122.9
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+++...++ |.++.++.+|.+.+++||. +|.|+++.| +||+.+++.+|...+.|.|+ .|++. ++...+
T Consensus 111 lg~~~~~~s~-~~~l~lG~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vffG~l~v~g~~y-iqt~~------~~~~~l 179 (303)
T COG1575 111 LGVILAALSD-WLVLLLGLLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFFGPLIVLGAYY-IQTGR------LSWAIL 179 (303)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHheeeecc--CCcCcccCC-HHHHHHHHHHHHHHHHHHHH-Hhccc------chHHHH
Confidence 4566666655 6688899999999999997 999999999 69999999999888888876 35432 334566
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
...++..+.+.+++..||+||+|.|+++|++|+|+++|+|+++.+...++..+|+..++..+....++.. .+.+.-.++
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~-ll~ll~~Pl 258 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWG-LLFLLALPL 258 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHH
Confidence 6778888889999999999999999999999999999999999999999999999999887777666554 333333334
Q ss_pred H
Q 029089 162 A 162 (199)
Q Consensus 162 ~ 162 (199)
+
T Consensus 259 ~ 259 (303)
T COG1575 259 A 259 (303)
T ss_pred H
Confidence 4
No 13
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.86 E-value=1.8e-20 Score=162.51 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089 13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA 92 (199)
Q Consensus 13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (199)
+..+..++++.+++++||. ||+|+||++.+||+.++..++..+..+.+. .+ + .++...+......++++.
T Consensus 128 ~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a--~~---g---~~~~~~~l~~~~~~l~~~ 197 (306)
T TIGR02056 128 PNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASYIALPWWAGHA--LF---G---ELNPDIAVLTLIYSIAGL 197 (306)
T ss_pred hHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHHHHHHHHHHHH--Hh---C---CCcHHHHHHHHHHHHHHH
Confidence 6677777889999999996 999999999899999998888544444332 11 1 123344455567778899
Q ss_pred HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 029089 93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPC 150 (199)
Q Consensus 93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~ 150 (199)
++++.||+||+|+|+++|+||+|+++|+|++.+++..+...+|...+........++.
T Consensus 198 ~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (306)
T TIGR02056 198 GIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLY 255 (306)
T ss_pred HHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999999999999999999998888887776665555444433
No 14
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.86 E-value=6.2e-20 Score=157.84 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=111.9
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|++++...+ ++.+..++++.+++++||. ||.|+|+++ +||+.++..+|...+.|.++. +++ ..+.+.+
T Consensus 103 ~g~~l~~~~~-~~~~~~~~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~~~~~~~~~-~~~------~~~~~~~ 171 (293)
T PRK06080 103 LGLYLVAVSG-WWLLLLGLLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLVIVLGTYYL-QAG------TVDSAVF 171 (293)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHHHHHHHHHH-hcC------CCCHHHH
Confidence 3555665544 6777777889999999996 999999998 699999999997766666542 321 1234556
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLP 149 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~ 149 (199)
+...+.++++.++++.||+||+|+||++|+||+|+++|+|++.+++..+..++|+..+.....+..++
T Consensus 172 ~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (293)
T PRK06080 172 LPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP 239 (293)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 66678888899999999999999999999999999999999999999999999998888877764443
No 15
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=6.7e-20 Score=157.19 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=103.8
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089 3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF 82 (199)
Q Consensus 3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (199)
|+.+... ++|..+..+.++++.++.||. ||.|+|++|+.+++++++++..+.++|.++. + . ..+...+.
T Consensus 96 ~l~l~~~-~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~--~----~--~~~~~~~l 164 (282)
T PRK13105 96 LVVLLAV-GSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLVLA--G----A--PFTAALWA 164 (282)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHHHh--h----c--cccHHHHH
Confidence 3444443 458888888899999999995 9999999999889888888876677787653 1 1 12334455
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVV 140 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~ 140 (199)
....+.+++.+++++||+||+|+||++|+||+|+++|+|++.+++..+...+++..+.
T Consensus 165 ~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 165 VLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788899999999999999999999999999999999999999999999877663
No 16
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.85 E-value=6.1e-20 Score=158.31 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=98.8
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCC--CCCc--cccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcch
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLD--LPLL--RWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFP 77 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~--lppl--rlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~ 77 (199)
+|+++++..| |.+ .++++.+.+++||.+ .+|. |+|+.|.+||+.++..||.....+.-.+ + + ..
T Consensus 111 lGl~La~~~g-~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~----~---~~- 178 (307)
T PRK13591 111 LGTYILAMDG-MLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-C----G---SL- 178 (307)
T ss_pred HHHHHHHHHh-HHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-h----h---hH-
Confidence 6788888766 544 346788899999963 2244 8899999999999999996433221110 1 1 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchh
Q 029089 78 KQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFL 148 (199)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~ 148 (199)
.+...+..+.....++++++||++|+||||++|+||+|+++|+|++.++...+..++|++.+.....+-.+
T Consensus 179 ~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~ 249 (307)
T PRK13591 179 IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA 249 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112222233335788899999999999999999999999999999999999999999888777776443
No 17
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.83 E-value=6.8e-19 Score=153.18 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=100.8
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQL 80 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~ 80 (199)
+|+.+++..| +.....++++.+++++||. ||+|+||++.+||+.++..++ .++..|.+. .++ . ..+...
T Consensus 122 ~~~~l~~~l~-~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~-~~~----~--~~~~~~ 191 (314)
T PRK07566 122 LGLAVAYLLG-PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAA-FGA----G--LPSWPI 191 (314)
T ss_pred HHHHHHHHHC-hHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHHHH-hcc----C--CCCHHH
Confidence 3556666666 5556666778889999997 999999999999999999987 444445432 221 1 123344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHH
Q 029089 81 LFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVA 141 (199)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~ 141 (199)
++.....+++..+++..||++|+|+||++|+||+|+++|+|++.+++..++..+|+..+..
T Consensus 192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~ 252 (314)
T PRK07566 192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL 252 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677899999999999999999999999999999999999999888888776544
No 18
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.83 E-value=7.1e-19 Score=153.98 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089 13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA 92 (199)
Q Consensus 13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (199)
+.++..++++.+++++||. ||+|+||+++.|+..+++.++.....+.+. . .+. .+...+......++++.
T Consensus 125 ~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a--~---~g~---~~~~~~~l~~~~~l~~~ 194 (331)
T PRK12392 125 MVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFITFLSANA--L---FSD---IRPEVVWLAGLNFFMAI 194 (331)
T ss_pred HHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHHHHHHHHHHH--H---hcC---CCHHHHHHHHHHHHHHH
Confidence 4455555678889999997 999999999999999999998544333321 1 121 23344455567788899
Q ss_pred HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 029089 93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSP 146 (199)
Q Consensus 93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~ 146 (199)
+++++||++|+|||++.|+||+|+++|+|++.+++........++.+..+....
T Consensus 195 ~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 248 (331)
T PRK12392 195 ALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG 248 (331)
T ss_pred HHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887776566555555555444
No 19
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.80 E-value=6.9e-18 Score=149.88 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHH
Q 029089 13 PPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNA 92 (199)
Q Consensus 13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (199)
+..+..++++++++++||. ||+|+||++++||+..+..++..+..+.+. .+ + .++...+....+.++++.
T Consensus 197 ~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a--~~---g---~~s~~~illal~~~l~~l 266 (375)
T PLN00012 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQA--LF---G---TLTPDVVVLTLLYSIAGL 266 (375)
T ss_pred HHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHHHHHHHHHHHH--Hc---C---CCCHHHHHHHHHHHHHHH
Confidence 5556666778889999996 999999999999999888887433332221 11 2 123344455567778899
Q ss_pred HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089 93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~ 139 (199)
++++.||+||+|||++.|++|+|+++|+|++.+++..+..+..+..+
T Consensus 267 ai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 267 GIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred HHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765555544333
No 20
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.78 E-value=2.9e-17 Score=140.26 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=98.3
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.++...| +......+++.+.++.||. ++||+|..+|++++..++.++..|.... +.. +...+
T Consensus 94 ~~~~~~~~l~-~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~~------~~~---~~~~~ 158 (279)
T PRK12884 94 LGLIAAYLIS-PLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIAV------GEL---NEAVI 158 (279)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHHh------CCC---chHHH
Confidence 4556666666 4555556778889999994 3599998899999999997777675431 111 11344
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhc
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATS 145 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~ 145 (199)
......++++.+++..||+||+|+||++|+||+|+++|+|++.+++.......++.....+..+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 159 LLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677888899999999999999999999999999999999999888888776665544443
No 21
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.76 E-value=2e-17 Score=138.10 Aligned_cols=112 Identities=29% Similarity=0.576 Sum_probs=87.3
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +..+....++.+.+++|| ||+|+||+|+.++++++..++.....|.+.. +. ..+.+.+
T Consensus 82 l~l~l~~~~~-~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~ 149 (257)
T PF01040_consen 82 LGLLLALLLG-PWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GG--DPPPPPF 149 (257)
T ss_pred HHHHHHHhcC-chhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CC--cccHHHH
Confidence 4556666666 444455567788889999 9999999999999999999997777776541 11 1133444
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFS 125 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~ 125 (199)
....+.+++.......+|++|+|+|++.|+||+|+++|+|++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 150 LLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 44455567788889999999999999999999999999999998
No 22
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.75 E-value=1.1e-16 Score=136.82 Aligned_cols=124 Identities=28% Similarity=0.394 Sum_probs=90.6
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +.......++.++.+.||. |+||+|.+||+.++...|.++..|.... +. .. ....+
T Consensus 95 ~g~~~~~~l~-~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~~------~~-~~-~~~~~ 160 (276)
T PRK12882 95 AGVALAFLLP-PLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAAV------GT-EG-LLALL 160 (276)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHHh------cc-cc-hHHHH
Confidence 4566666656 4445555677788999994 5599999999999999986666665331 11 11 11223
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~ 139 (199)
......+++..+++++||+||+|+|+++|+||+|+++|+|++.+++........+...
T Consensus 161 ~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~ 218 (276)
T PRK12882 161 VLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASP 218 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778899999999999999999999999999999999988777666544333
No 23
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.70 E-value=1.4e-15 Score=130.10 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=90.8
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +......+++.++++.||.. +||++.+||++++..+|..++.|.... + + . ...+
T Consensus 94 ~~~~l~~~l~-~~~~~l~~~~~~~~~~Ys~~-----lKr~~~~~~~~vg~~~G~~~~~g~~~~-~----~---~--~~~~ 157 (279)
T PRK09573 94 VGLILSIFIN-IYAFLIALLNSILLYLYAKD-----LKKTGLIGNLIVAYLTGLSFIFGGLAV-F----N---V--LRII 157 (279)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH-----HhcCCcHHHHHHHHHHHHHHHHHHHHH-c----c---c--hHHH
Confidence 3555666556 44444556778889999943 499998999999999997777776432 2 1 1 1223
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~ 139 (199)
......++++.++++.||.||+|+|+++|+||+|+++|+|++.+++............
T Consensus 158 ~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~ 215 (279)
T PRK09573 158 ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP 215 (279)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778899999999999999999999999999999999998777666544443
No 24
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.69 E-value=2.5e-15 Score=128.50 Aligned_cols=115 Identities=25% Similarity=0.388 Sum_probs=84.6
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..|. ........+.+.++.||.+ +||++.+||+.++..+|..++.|.... +. .+...+
T Consensus 94 ~g~~l~~~~~~-~~~~~~~~~~~~~~~Y~~~-----~k~~~~lg~~~vg~~~g~~~~~g~~a~------~~---~~~~~~ 158 (277)
T PRK12883 94 VGLALAYLINI-EAFLFALGAYVLMFLYAWK-----LKPLPFIGNVVVALLTGATPIYGAIAV------GR---IGLAGY 158 (277)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc-----ccCCcchhhHHHHHHHHHHHHHHHHHh------cc---ccHHHH
Confidence 46677777664 4444456778889999954 489888899999999996556665321 11 112222
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLL 132 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~ 132 (199)
.. ...++++.++++.||+||+|+|+++|+||+|+++|+|++.+++.....
T Consensus 159 ~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~ 208 (277)
T PRK12883 159 LA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGV 208 (277)
T ss_pred HH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHH
Confidence 22 335666789999999999999999999999999999999998765543
No 25
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.69 E-value=1.2e-15 Score=130.97 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcC
Q 029089 20 IIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKD 99 (199)
Q Consensus 20 ~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 99 (199)
+..++.++.||. ||+|+|++|+.+..+.+. +..+.. +.|+. +++ ..+...++. ..++++.+++++||
T Consensus 120 l~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~-~~~~~~-~~y~~-~tg------~~~~~~l~~--a~~l~~~~~~~in~ 186 (282)
T PRK12875 120 LAFLVLSVEYSA--PPLRFKTTPVLDSLSNGL-YILPGV-AAYAL-VSG------SLPPLLAVA--GGWLWAMGMHTFSA 186 (282)
T ss_pred HHHHHHHHHHcC--CCccchhccHHHHHHHHH-HHHHHH-HHHHH-HcC------CCcHHHHHH--HHHHHHHHHHHHHh
Confidence 456889999996 999999999755443333 223333 43432 221 122232222 24677899999999
Q ss_pred CCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHH
Q 029089 100 LPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 100 i~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~ 139 (199)
+||+|+|++.|+||+|+++|+|++.+++..+...+-...+
T Consensus 187 i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 187 IPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred ccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888777643333
No 26
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.69 E-value=1.9e-15 Score=129.58 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=110.4
Q ss_pred hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089 4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA 83 (199)
Q Consensus 4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
+.++...+.+... ....+.++.+.|+. + ||+..++++..+...+.++..|... ++ +. .+.....+..
T Consensus 97 ~~~~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~~~g~~a--~~---g~-~~~~~~~~ll 163 (282)
T TIGR01475 97 LSASYFLNPLAFI-LSPLVLLVLIIYPY-T-----KRFTFLCHYVLGSTYGLAPLAGWVA--VI---GT-ISFFLVAWLL 163 (282)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHhh-H-----hccccccHHHHHHHHHHHHHHHHHH--Hh---CC-ccchHHHHHH
Confidence 3444444533333 33456667889983 3 9988899999999999777777543 21 11 1111233444
Q ss_pred HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 029089 84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAA 163 (199)
Q Consensus 84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (199)
....++++.+.+.+||.||+|+|++.|+||+|+++|+|++.+.+......++......+......+... ....+...
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~---~~~~~~~~ 240 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIAL---LALILIGL 240 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH---HHHHHHHH
Confidence 566788899999999999999999999999999999999999988888887766666655543322221 22223334
Q ss_pred HHHHHhhhcCCCCchHHHH
Q 029089 164 LLWRKAQTVDLTDPPSMQS 182 (199)
Q Consensus 164 ~l~~~~~~~d~~~~~~~~~ 182 (199)
.+..+.+..|.+++++.++
T Consensus 241 ~l~~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 241 ILAYEHYIVDPGDQSKIQR 259 (282)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4566677788777665443
No 27
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.68 E-value=2.3e-15 Score=129.32 Aligned_cols=168 Identities=11% Similarity=0.107 Sum_probs=115.5
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +.....++++.++++.||. . ||+..++++..++.++.++..|... ++ + ..+...+
T Consensus 104 ~~~~l~~~~~-~~~~~~~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~l~~~~a--~~---g---~~~~~~~ 168 (285)
T PRK12847 104 IALVILLLLN-KTTIYLSFIAVILIVLYPL-M-----KRFFYWPQLFLGFTFNMGILMAFAA--VQ---N---QLDIEAI 168 (285)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHhccc-c-----ccCCcccHHHHHHHHHHHHHHHHHH--Hc---C---CCcHHHH
Confidence 4556666665 5556666788888999983 3 8877789999999988666556433 21 1 1234445
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.....++++.+.+.++|++|+|+|+++|+||+|+++|+|++.+++.......++..+.....+..++..... ++.
T Consensus 169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~----~~~ 244 (285)
T PRK12847 169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAI----LAA 244 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHH
Confidence 5556778889999999999999999999999999999999999999888888777666555544333222211 122
Q ss_pred HHHHHHHhhhcCCCCch-HHHHHHHHHH
Q 029089 162 AALLWRKAQTVDLTDPP-SMQSFYMFIF 188 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~-~~~~~y~~~w 188 (199)
...++++.+.+|.++++ ..+.|+.-.+
T Consensus 245 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 272 (285)
T PRK12847 245 AGIFYYQYKLLDFDNPANCMYAFKANHY 272 (285)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhHH
Confidence 23445555677777654 3444444333
No 28
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.67 E-value=5.9e-15 Score=126.91 Aligned_cols=174 Identities=20% Similarity=0.322 Sum_probs=123.6
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+.+.+. ....+.++.+.| ..+ ||.+.+++++.+.+++.....|.... . +. .+.+.+
T Consensus 106 ~~~~~a~~l~~~~~~-l~~~~~~l~~~Y-~~~-----Kr~~~~~~~~lg~~~~~~~~~g~~a~-~----~~---~~~~~~ 170 (289)
T COG0382 106 LGLALALLLNPLAFL-LSLAALVLALAY-PFL-----KRFTFLPQLVLGLAFGLGALAGAAAV-G----GS---LPLLAW 170 (289)
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHH-HHh-----hcCCchHHHHHHHHHHHHHHHHHHHH-h----Cc---cchHHH
Confidence 467778777865544 456788899999 334 99999999999999998887786542 1 11 234555
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+..+..++++.++++.||++|+|+||++|+||+|+.+|+|++..++........ .....+....... ........+.
T Consensus 171 ~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 247 (289)
T COG0382 171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASA-LLVLLGLLAGLLG--LIYLLGLLVA 247 (289)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHH-HHHHHHHHHhhch--HHHHHHHHHH
Confidence 666788889999999999999999999999999999999999999988874432 2222222221111 1333455555
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh
Q 029089 162 AALLWRKAQTVDLTDPPSMQSFYMFIFKASGS 193 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~~~~y~~~w~lf~~ 193 (199)
...+.++....|.++++...+++..-...-.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (289)
T COG0382 248 ALLLLYQILIVDVRDPPACFALFDVNLLLGLL 279 (289)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHhhHHHHH
Confidence 66667877888777777777766655544333
No 29
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.64 E-value=3.4e-14 Score=122.16 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=108.4
Q ss_pred hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089 4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA 83 (199)
Q Consensus 4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
+.++...+..... ...++++....|+- . ||...++++..++..+.++..|.+. ++ + . .+...++.
T Consensus 100 l~l~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----Kr~t~~~~~~lg~~~~~~~l~g~~a--~~---g-~--~~~~~~ll 164 (284)
T PRK12888 100 LGAAALLNPLCLA-LAPLAVAPLVVYPY-A-----KRFTNFPHAILGLAQAVGPVGAWIA--VT---G-T--WSWPAVLL 164 (284)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHHH-h-----hcccchhhHHHHHHHHHHHHHHHHH--Hc---C-C--CCHHHHHH
Confidence 3344444533333 33455556677862 3 8888899999999998776667432 21 1 1 23344455
Q ss_pred HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 029089 84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAA 163 (199)
Q Consensus 84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (199)
....++++.+.+++|+++|+|+|++.|+||+|+++|+|++.+++..+....++.....+......+... .+-.+.+.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~ 241 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAG 241 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHH
Confidence 567788899999999999999999999999999999999998877777666655555555443322221 12224445
Q ss_pred HHHHHhhhcCCCCch-HHHHHH
Q 029089 164 LLWRKAQTVDLTDPP-SMQSFY 184 (199)
Q Consensus 164 ~l~~~~~~~d~~~~~-~~~~~y 184 (199)
.+.++.+.+|.++++ ..++|+
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 242 AFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHHHHHcCccCHHHHHHHHH
Confidence 556677778888754 445755
No 30
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.64 E-value=2e-14 Score=123.40 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=87.7
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +......+++.++.+.||. . ||+..++++..++.++.++..|.+. .+ + ..+...+
T Consensus 99 ~~~~l~~~l~-~~~~~l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~~~~~~~g~~a--~~---g---~~~~~~~ 163 (281)
T TIGR01474 99 VALGVLLQLN-PLTILLGVASLALVATYPF-M-----KRITYWPQLVLGLAFGWGALMGWAA--VT---G---DLSTAAW 163 (281)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHhch-h-----cccccccHHHHHHHHHHHHHHHHHH--Hc---C---CCcHHHH
Confidence 4667777666 4445556778889999983 4 8888899999999999777778542 21 2 1233334
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
......++++.+.+..||++|+|+|++.|+||+|+++|+|++...........
T Consensus 164 ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~ 216 (281)
T TIGR01474 164 VLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMI 216 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHH
Confidence 44456778899999999999999999999999999999998766544444333
No 31
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.60 E-value=4.7e-14 Score=122.18 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=109.9
Q ss_pred hHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCC--cchHHHHH
Q 029089 5 AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPV--VFPKQLLF 82 (199)
Q Consensus 5 ~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~--~~~~~~~~ 82 (199)
.++...+....... ..+.+....|+. . ||+..++++..+..++..+..|.... ++....+. ..+...++
T Consensus 111 ~~~~~ln~~~~~l~-~~~~~~~~~Y~~-~-----KR~t~~~~~~lg~~~~~~~~~G~~a~--~g~~~~~~~~~l~~~~~~ 181 (300)
T PRK13106 111 ASAYLVNRWALLLS-PIVALIAMSYPY-M-----KRYTAFANYHLASIQGLAVFSGAVAV--LGLYANSLIQVLLRVPWL 181 (300)
T ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHhH-H-----hcCCcchHHHHHHHHHHHHHHHHHHH--cCCcccchhhhhhHHHHH
Confidence 33444454444333 345556777873 4 99999999999999997777776432 11111000 11122233
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA 162 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (199)
.....++++.+++++||.+|+|+|++.|+||+|+++| |++.+++..+...+.......+......+... .+-.+..
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~---~~~~~~~ 257 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGPIAI---AATILHG 257 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHH
Confidence 3445678899999999999999999999999999999 88999888777776555555544443322211 1112333
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHHH
Q 029089 163 ALLWRKAQTVDLTDPPSMQSFYMFIFK 189 (199)
Q Consensus 163 ~~l~~~~~~~d~~~~~~~~~~y~~~w~ 189 (199)
..+.++.+..|.+ ++..+.|.+..|.
T Consensus 258 ~~l~~~~~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 258 LIMAYAYYLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence 4445666677777 7777888776654
No 32
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.59 E-value=1.5e-13 Score=118.55 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=92.9
Q ss_pred hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHH
Q 029089 4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFA 83 (199)
Q Consensus 4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
+.++...+.+.... ..++.+....||. . ||+..++++..++..+.++..|.+. ++ + . .+.+.++.
T Consensus 103 ~~l~~~~~~~~~~l-~~~~~~~~~~Y~~-~-----Kr~t~~~~~~~g~~~~~~~l~g~~a--~~---g-~--~~~~~~ll 167 (291)
T PRK12886 103 LFAAWFLNPLCLYL-SPPALFFLLLYSY-C-----KRFTALAHVVLGFCLALAPLGAWIA--IR---G-T--IELPAILL 167 (291)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhh-h-----hccccccHHHHHHHHHHHHHHHHHH--Hc---C-C--CcHHHHHH
Confidence 33444456444443 3456667889994 4 9999899999999988776666432 22 1 1 22344455
Q ss_pred HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 029089 84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSP 146 (199)
Q Consensus 84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~ 146 (199)
....++++.+.++.++++|+|+|++.|+||+|+++|+|++.++........+...+..+..+.
T Consensus 168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (291)
T PRK12886 168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAG 230 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566788889999999999999999999999999999999999887777777666666655543
No 33
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.56 E-value=2.8e-13 Score=116.90 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=86.9
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHH
Q 029089 3 GVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLF 82 (199)
Q Consensus 3 gl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (199)
|+.+++.++....... +..++....||- . ||+..++++..++..+.+++.|.... + + . .+...++
T Consensus 107 ~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~-~-----KR~t~~~~~~~g~~~~~~~l~G~~av--~---g-~--~~~~~~~ 171 (291)
T PRK12874 107 FIGVSYFINPLAFKLS-FPFLIVLGGYSY-F-----KRFSSLAHLVLGLSLGLAPIAGVVAV--L---G-E--IPLWSVF 171 (291)
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHhh-h-----cccccccHHHHHHHHHHHHHHHHHHH--c---C-C--CcHHHHH
Confidence 4455555565544443 456667888983 4 99888999999999998888886532 1 1 1 2223334
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
.....++++.+.+.+++++|+|+|++.|++|+|+++|+|++.+..........
T Consensus 172 l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~ 224 (291)
T PRK12874 172 LALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAV 224 (291)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999987655554443
No 34
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.56 E-value=1.6e-13 Score=118.10 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=108.9
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+...+... ..+.. ...|+..+ ||...++++..+...|.++..|... . +.+..+....+
T Consensus 96 ~~~~~~~~ln~l~~~l~-~~~~~-l~~~yp~~-----KR~t~~~~~~lG~~~g~~~l~g~~A-v-----~g~~~~~~~~~ 162 (286)
T PRK12895 96 IFEICTFLLNRLVFILS-PIVIF-LFIIDPFL-----KRYTAWRHIYMGSIIGLGVLAGYLA-V-----IPAFPYNLLIY 162 (286)
T ss_pred HHHHHHHHHhHHHHHHH-HHHHH-HHHHHHHH-----HhCccccHHHHHHHHHhHHHHHHHH-H-----cCCCCchHHHH
Confidence 35556666665444432 33333 34455334 9999999999999999777777542 1 21122222333
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.....++++.+.+++++.+|+|+|++.|+||+|+++|+|++.++...+...+.......+.....+ ..-.+-.+.
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~~~----~y~~~~~~~ 238 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIRTL----WYLAALIII 238 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHH
Confidence 4456678889999999999999999999999999999999999877666666544444444333211 111233344
Q ss_pred HHHHHHHhhhcCCCCchHH-HH-HHHHH
Q 029089 162 AALLWRKAQTVDLTDPPSM-QS-FYMFI 187 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~-~~-~y~~~ 187 (199)
+..+.++.+.+|++++++. .+ |.+.-
T Consensus 239 ~~~l~~q~~~~~~~~~~~~~~~~F~~N~ 266 (286)
T PRK12895 239 YTLVIYQHLIIDPRNPINKRMSFFNANS 266 (286)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 5555777788888886665 54 44433
No 35
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.55 E-value=3.7e-13 Score=116.01 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=113.4
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+.+..++.... ...++.+....||. .||+..++++..++..+.++..|... .+ +. .+. ....
T Consensus 104 ~~~~~~~~l~~~~~~-l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a--v~---g~-~~~-~~~~ 169 (289)
T PLN02809 104 LGLGILLQLNNYSRI-LGASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGALLGWAA--VK---GS-LDP-AVVL 169 (289)
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHHHHHHH--Hh---CC-CCh-HHHH
Confidence 355566666654444 44567778889983 49999999999999988777777532 11 21 111 1222
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
......++++.+.+.+.+.+|+|+||+.|+||+|+++|+|+..+++ .+...++......+......+. .-.++...
T Consensus 170 ~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~ 245 (289)
T PLN02809 170 PLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGWP---YYAGLAAA 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHH---HHHHHHHH
Confidence 2334456678888999999999999999999999999999777766 4555556555555544322211 12356667
Q ss_pred HHHHHHHhhhcCCCCchHH-HHHHHHHH
Q 029089 162 AALLWRKAQTVDLTDPPSM-QSFYMFIF 188 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~-~~~y~~~w 188 (199)
+..++++.+.+|.+++++. +.|.+..|
T Consensus 246 ~~~l~~~~~~v~~~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 246 AGHLAWQIQTVDLSSRADCNRKFVSNKW 273 (289)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence 7778899999999986655 44444443
No 36
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.54 E-value=4.4e-13 Score=116.84 Aligned_cols=163 Identities=13% Similarity=0.067 Sum_probs=104.6
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+.+..| +.....++++.++.+.|+. . ||+...++...++..+.++..|.+. +++. ++...+
T Consensus 131 ~g~~l~~~~~-~~~~~l~~~~~~~~~~Y~~-~-----KR~t~~~~~~~Gl~~~~~~l~g~~a--~~g~------~~~~~~ 195 (314)
T PRK12878 131 VGLAVLLQFN-WFAIALGIASLAIVAAYPF-M-----KRITWWPQFFLGLAFSWGALMGWAA--HFGS------LSLAAV 195 (314)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHHHH-H-----HhcCCcchHHHHHHHHHHHHHHHHH--HhCC------CchHHH
Confidence 4566666655 5556666788888999983 3 7766678888888887766677432 3221 222334
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
......++++.+.+.+++++|+|+|+++|+||+|+++|+|++.+++...........+.....+ ..+......+ ..
T Consensus 196 ~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~---~~ 271 (314)
T PRK12878 196 LLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG-VPLLALLGLL---AA 271 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH---HH
Confidence 4445667789999999999999999999999999999999999988655555543333322322 2222211111 11
Q ss_pred HHHHHHHhhhcCCCCchHHHHH
Q 029089 162 AALLWRKAQTVDLTDPPSMQSF 183 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~~~~ 183 (199)
...+..+..++|.+++++.+++
T Consensus 272 ~~~l~~~~~~~~~~~~~~~~~~ 293 (314)
T PRK12878 272 AAHLAWQIARLDIDDPDQCLRL 293 (314)
T ss_pred HHHHHHHHHHcccCChHHHHHH
Confidence 2224556677776665554333
No 37
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.54 E-value=2.1e-13 Score=117.62 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=104.9
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+..... ....+.+..+.|+. . ||....+++..++.++.++..|... ++ + ..+...+
T Consensus 105 ~~~~l~~~l~~~~~~-l~~~~~~~~~~Y~~-~-----KR~t~~~~~~lg~~~~~~~l~g~~a--~~---g---~~~~~~~ 169 (290)
T PRK12870 105 CAAGLAFFLNPLSFW-LCVAAVPVIFLYPL-A-----KRVFPVPQLVLAIAWGFAVLISWSA--VT---G---HLDLGTW 169 (290)
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHhhh-h-----hhccccceeeehHHHHhHHHHHHHH--Hc---C---CCCHHHH
Confidence 455666666644433 44567777889983 3 7777788999999998766666432 22 1 1223444
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.....++++.+.+..++++|+|+|+++|+||+|+++|+|++.++.........+.. ..+......+.... +-...
T Consensus 170 ~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~y~~---~~~~~ 245 (290)
T PRK12870 170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLA-ILGVLLELHLPFWI---GLAIA 245 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHH---HHHHH
Confidence 555677889999999999999999999999999999999999887764333333222 23332222111111 11122
Q ss_pred HHHHHHHhhhc--CCCCchHH-HHHHHHHHH
Q 029089 162 AALLWRKAQTV--DLTDPPSM-QSFYMFIFK 189 (199)
Q Consensus 162 ~~~l~~~~~~~--d~~~~~~~-~~~y~~~w~ 189 (199)
...+.++..++ |.++++.. +.|+...|.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 246 AVLWARQYRRLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred HHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence 33334455555 65666444 555555543
No 38
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.53 E-value=8.6e-13 Score=113.27 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=105.3
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+. ......+.+.++.+.|+. . ||+..++++..++.+|.++..|... ++ + ..+...+
T Consensus 101 ~~~~l~~~l~~-~~~~l~~~~~~~~~~Y~~-~-----Kr~~~~~~~~~g~~~g~~~~~g~~a--~~---~---~~~~~~~ 165 (282)
T PRK12848 101 VAFLLVLTLNT-LTIWLSVAALALAWIYPF-M-----KRYTHLPQVVLGAAFGWGIPMAFAA--VQ---G---SVPLEAW 165 (282)
T ss_pred HHHHHHHHHhH-HHHHHHHHHHHHHHHHHh-H-----HhcCcccHHHHHHHHHHHHHHHHHH--Hh---C---CCcHHHH
Confidence 34555665563 334445667778899962 3 7777789999999999766666542 22 1 1233444
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.....+++..+....++++|+|+|+++|+||+|+++|+|++.+.............+.....+ ..+... ..-.+.
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~---~~~~~~ 241 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLG-LGWAYY---WGLLVA 241 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhc-CcHHHH---HHHHHH
Confidence 5556677788899999999999999999999999999999998876444433333322222222 111111 112234
Q ss_pred HHHHHHHhhhcCCCCch-HHHHHHHHHH
Q 029089 162 AALLWRKAQTVDLTDPP-SMQSFYMFIF 188 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~-~~~~~y~~~w 188 (199)
...+.++.+.+|.++++ ..+.|++..|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~F~~n~~ 269 (282)
T PRK12848 242 AALFVYQQKLIRDREREACFKAFLNNNW 269 (282)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence 44445666778877654 4455555444
No 39
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.48 E-value=3.6e-12 Score=110.19 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=101.7
Q ss_pred hhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchH--HHH
Q 029089 4 VAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPK--QLL 81 (199)
Q Consensus 4 l~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~--~~~ 81 (199)
+.++...+...... ..+++++...||. . ||+..++++.-++..+..+..|... .. +.+..+.. ..+
T Consensus 108 ~~l~~~ln~l~~~l-~~~~~~~~~iY~~-~-----KR~t~~~~~vLGl~~~~~~l~~~~A-v~----~~~~~~~l~~~~~ 175 (300)
T PRK12876 108 LSLCWLLNPLCFSL-AVLSTLLMIIYPY-T-----KRVTFLCHWILGLVYYLAILMNFFA-II----ETPLSFSLFCMAS 175 (300)
T ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHHh-H-----hcCCchhHHHHHHHHHHHHHHHHHH-Hh----cCcccHHHHHHHH
Confidence 44455556444444 3566777789984 5 9999999999888888665556442 22 21111100 122
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.....++++.+.+++++.+|+|+||+.|+||+|+++|+|++.++......+..+..+..+......+..-..++.-...
T Consensus 176 lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~ 255 (300)
T PRK12876 176 LWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTV 255 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 22345566778999999999999999999999999999999877776666655444444443332221111111111112
Q ss_pred HHHHHHHhhhcCCCCchHHHHHHH
Q 029089 162 AALLWRKAQTVDLTDPPSMQSFYM 185 (199)
Q Consensus 162 ~~~l~~~~~~~d~~~~~~~~~~y~ 185 (199)
.....++.+.+|.++++.+.++++
T Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~F~ 279 (300)
T PRK12876 256 ILKTIKHYSLIDKKKSTLEQKFFL 279 (300)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHH
Confidence 222345545556655555555443
No 40
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.48 E-value=9.1e-12 Score=106.80 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=81.0
Q ss_pred hhhHHHH-hccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 3 GVAMGMM-LRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 3 gl~l~~~-~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
|+.++.. .+............+..+.||.++ ||++. +|..++...|...++|.+.. ++ + ..+...+
T Consensus 96 ~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~l-----Kr~~~-~~~~v~~~~g~~~~l~g~~a-~~---g---~~~~~~~ 162 (279)
T PRK12869 96 GTALGFLLLGPLTALFIALGWFFYAVVYTIWL-----KPRTW-LNIVIGGFAGNAAALAGYAS-GT---G---SLDLEAV 162 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-----ccCCh-HHHHHHHHHHHHHHHHHHHH-Hh---C---CCCHHHH
Confidence 4444444 443332233334456778888544 99995 78888888884444454543 22 1 1233445
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
+.....+++..+....++.+|+|.|+++|+||+|+++|+|++.+.+.....+.
T Consensus 163 ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~ 215 (279)
T PRK12869 163 LLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALM 215 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHH
Confidence 55567778888888888999999999999999999999999998876665554
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.47 E-value=8.5e-12 Score=107.97 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccccCC----CchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHH
Q 029089 13 PPLVICFIIWWIVGAAYSLDLPLLRWKGS----PLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMP 88 (199)
Q Consensus 13 ~~ll~~~~~~~~~~~~YS~~lpplrlKr~----p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (199)
+..+..++.+.++++.|+. ||+ | .+.+.-+...+.+++.|. . ++ + ..+...+....+.+
T Consensus 123 ~~~~~l~~~~~~~~~~Y~~-------~kr~~~~p-~~~l~G~~~~~~~~~~g~-~--~~---g---~~~~~~~ll~~~~~ 185 (297)
T PRK12871 123 LYVFVIMLYSYGIEAFYQV-------KKRNQKYP-VAQLLGRTDFTLFPAAGY-L--CY---G---QPDMTALLYMVFFY 185 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-------cccccccc-HHHHHHHHHHHHHHHHHH-H--Hh---C---CCcHHHHHHHHHHH
Confidence 3455556677788889984 444 6 233222233344445552 2 21 2 12234445556778
Q ss_pred HHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHH
Q 029089 89 IFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGA 137 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~ 137 (199)
+++.+++..||++|+|+|+++|+||+|+++|+|++.+....+..+..+.
T Consensus 186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~ 234 (297)
T PRK12871 186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLA 234 (297)
T ss_pred HHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998776666555433
No 42
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.40 E-value=9e-12 Score=107.16 Aligned_cols=111 Identities=11% Similarity=0.141 Sum_probs=78.5
Q ss_pred HHHHHHHHHh-----cCCCCCccccCCCchhHHHHHHHHHHHHHHHH--HHH-HHhhhhCCCCcchHHHHHHHHHHHHHH
Q 029089 20 IIWWIVGAAY-----SLDLPLLRWKGSPLMAAVTIIILNGLLLQFPY--FVH-FQKYVLGRPVVFPKQLLFAAAIMPIFN 91 (199)
Q Consensus 20 ~~~~~~~~~Y-----S~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 91 (199)
+...++.+.| +..+ ||.|+.||+.++...+.++..|. +.. ......+.+ ......+...+..++.+
T Consensus 115 i~~~~i~~lY~~lm~a~~~-----K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~-~~~~~~~~l~l~afl~~ 188 (299)
T PRK13592 115 VGWFLFLYIYGTLMSFWFF-----KRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP-LLSLPTVLLAFTMYFPS 188 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH-----cccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc-hhhHHHHHHHHHHHHHH
Confidence 3456678888 7655 99999999999999997665551 110 011111211 11111134445677779
Q ss_pred HHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHH
Q 029089 92 AAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAG 138 (199)
Q Consensus 92 ~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~ 138 (199)
.+||+.||+|| |||++. .+|+|+++|+|++.++...+..++.+..
T Consensus 189 l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~s 233 (299)
T PRK13592 189 LIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILTN 233 (299)
T ss_pred HHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHHh
Confidence 99999999999 899865 9999999999999999999888765443
No 43
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.36 E-value=1.1e-10 Score=99.93 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=72.9
Q ss_pred hccHHHHHHHHHHHHH-HHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHH
Q 029089 10 LRSPPLVICFIIWWIV-GAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIM 87 (199)
Q Consensus 10 ~g~~~ll~~~~~~~~~-~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
.+ +.......++.++ .+.||..+ ||++. .|..++...| .++..| |.. ++ + ..+...++.....
T Consensus 103 ~~-~~~~~l~~~~~~~~~~~Yt~~l-----Kr~~~-~~~~v~~~~g~~~~l~g-~~a-~~---g---~~~~~~~~l~~~~ 167 (280)
T TIGR01473 103 VN-PLAALLGLFGIFFYVIVYTIWL-----KRRTP-QNTVIGGFAGAVPPLIG-WAA-VT---G---SISLGAWLLFAII 167 (280)
T ss_pred Hh-HHHHHHHHHHHHHHHhhcChhh-----ccCCc-hhHHHHHHHHHHHHHHH-HHH-hc---C---CCCHHHHHHHHHH
Confidence 45 4434444556654 78999544 99885 4667777777 444444 432 22 1 1223334444455
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAG 142 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~ 142 (199)
+++...-......+|+|.||++|+||+|+++|+|++.+................+
T Consensus 168 ~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 168 FLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred HHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555543334457899999999999999999999998876655554433333333
No 44
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.31 E-value=2.6e-10 Score=98.63 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 029089 25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDV 103 (199)
Q Consensus 25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dv 103 (199)
....||.+ +||++ .+|..++...+ .++..|.+. ++ + ..+...++.....+++..+....+.++|+
T Consensus 127 ~~~~Ys~~-----lKr~~-~~~~~v~~~~g~~~~l~g~~a--~~---g---~~~~~~~~l~~~~~lw~~~~~~~~~~~d~ 192 (296)
T PRK04375 127 YVVVYTLW-----LKRRT-PQNIVIGGAAGAMPPLIGWAA--VT---G---SLSWEALILFLIIFLWTPPHFWALAIFRK 192 (296)
T ss_pred HHHHhccc-----hhcCC-ccchHHHHHHHHhHHHHHHHH--hC---C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678843 49999 68988888877 666666543 21 1 12334445556778888888888889999
Q ss_pred HhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 104 EGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 104 egD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
|.|+++|+||+|+++|+|++.+.+........
T Consensus 193 ~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~ 224 (296)
T PRK04375 193 DDYAAAGIPMLPVVKGIRVTKRQILLYTVLLV 224 (296)
T ss_pred hhHHHcCCCccceeeCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887655554443
No 45
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.25 E-value=4.1e-10 Score=97.34 Aligned_cols=154 Identities=11% Similarity=-0.011 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcC
Q 029089 20 IIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKD 99 (199)
Q Consensus 20 ~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 99 (199)
.++++....||- . ||+-...++..++..+.++..|... . + + ..++....++.....++++.+.+.+.+
T Consensus 124 ~~~~~~~~~Y~~-~-----KR~t~~~~~vlg~~~a~~~l~gw~A-v-~---g-~~~~~~~~l~l~~~~~~W~~~~d~iyA 191 (294)
T PRK12873 124 FLALPPILIYPS-A-----KRWFAYPQAILALCWGFAVLIPWAA-A-E---G-SLNGGWPLLFCWLATLLWTFGFDTVYA 191 (294)
T ss_pred HHHHHHHHHHHH-H-----HhccccchHHHHHHHHhHHHHHHHH-H-h---C-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788883 3 7777788999999999888777532 1 1 1 122222333434567888999999999
Q ss_pred CCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcCCCC---
Q 029089 100 LPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQTVDLTD--- 176 (199)
Q Consensus 100 i~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~d~~~--- 176 (199)
++|+|.|+++|++|+|+++|+ ++......+...........+......+... .+-...+..+.++.+.+|.++
T Consensus 192 ~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~---~~~~~~~~~l~~~~~~~~~~~~~~ 267 (294)
T PRK12873 192 MADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVGFIFW---PFWLIASIGMQRDILKLFPEKQSI 267 (294)
T ss_pred HHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHhCcCcccH
Confidence 999999999999999999997 4555555666555444444554443321111 111223344456666677665
Q ss_pred chHHHHHHHHHHH
Q 029089 177 PPSMQSFYMFIFK 189 (199)
Q Consensus 177 ~~~~~~~y~~~w~ 189 (199)
++..+.|++..|-
T Consensus 268 ~~c~~~F~~n~~~ 280 (294)
T PRK12873 268 KTIGNHFSNQVIL 280 (294)
T ss_pred HHHHHHHHhccHH
Confidence 4455778777764
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.24 E-value=1.2e-09 Score=94.90 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCChH
Q 029089 25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVE 104 (199)
Q Consensus 25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dve 104 (199)
....||..+ ||++..+++..++..+.++..|.... ++. .+...++.....+++..+.....+++|+|
T Consensus 130 ~~~~Yt~~l-----Kr~t~~~~~vgg~~ga~p~l~G~~a~------~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~ 196 (306)
T PRK13362 130 YVGVYSLYL-----KRNSVYGTLVGSLSGAMPPVVGYCAV------TGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFN 196 (306)
T ss_pred HHHHHhHHH-----hccCcHhHHHHHHHHHHHHHHHHHHH------cCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 467898445 99999999988888888888886532 111 23344555677888898888889999999
Q ss_pred hhHHcCCcccceeechHhHHHHHHHHH
Q 029089 105 GDKEFGLRTLPIILGRERVFSIAVNML 131 (199)
Q Consensus 105 gD~~~G~~Tl~v~lG~~~a~~l~~~l~ 131 (199)
.|+++|++|+|++.|+|++.+......
T Consensus 197 Dy~~aG~~~lpv~~G~~~t~~~~~~~~ 223 (306)
T PRK13362 197 DYAAAGIPVLPVARGIAKTKLHIVLYI 223 (306)
T ss_pred hHHHCCCeeeceecChHHHHHHHHHHH
Confidence 999999999999999999988544433
No 47
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=98.40 E-value=1.3e-07 Score=78.60 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=99.7
Q ss_pred HHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCChH
Q 029089 25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVE 104 (199)
Q Consensus 25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dve 104 (199)
..++|+ ..+.+|... +|++.+-+.+|++.++-.|. .|++-.. +. +...+ .+..+-+-++...||.||.|
T Consensus 187 ~sflyt---ggigfkyia-lgdliili~fgpiavlfaf~-~q~g~l~----~~-~l~ya-iplalnteailhsnntrd~d 255 (359)
T KOG4581|consen 187 GSFLYT---GGIGFKYIA-LGDLIILILFGPIAVLFAFA-IQTGHLA----IF-PLGYA-IPLALNTEAILHSNNTRDAD 255 (359)
T ss_pred cceeEe---cccceEEEe-ccCEEEEEeechHHHHHHHH-HhcCcee----EE-eehhe-eeeccchHHHhccCCCcccc
Confidence 445677 455778887 69999988998554444332 4543222 11 11122 33445577889999999999
Q ss_pred hhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHH
Q 029089 105 GDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWRKAQT-VDLTDPPSMQSF 183 (199)
Q Consensus 105 gD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~d~~~~~~~~~~ 183 (199)
.||++|+-|+++.+|+..+-.++..++..+|....+.+.-+... ..+.+...+.+.-+=+|.|+ ...+.-++-+.-
T Consensus 256 ndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~---~~lplltip~afqiek~frneqa~~~lp~qtak 332 (359)
T KOG4581|consen 256 NDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSIS---FALPLLTIPMAFQIEKQFRNEQAFHKLPQQTAK 332 (359)
T ss_pred cccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHhhchhHHhHHHHhhhHhhhhhcchhhhh
Confidence 99999999999999999999999999999998887766554322 22333444444444344332 112333344444
Q ss_pred HHHHHHHHHh
Q 029089 184 YMFIFKASGS 193 (199)
Q Consensus 184 y~~~w~lf~~ 193 (199)
-.|+..+||+
T Consensus 333 ln~~~gi~yv 342 (359)
T KOG4581|consen 333 LNFFFGIFYV 342 (359)
T ss_pred HHHHHHHHHH
Confidence 5566666664
No 48
>PLN02776 prenyltransferase
Probab=97.85 E-value=0.0037 Score=55.32 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=57.1
Q ss_pred HHHHHH-HHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 029089 20 IIWWIV-GAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFS 97 (199)
Q Consensus 20 ~~~~~~-~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 97 (199)
..+.++ ...||. + ||+..+ |..++...| .++..|.... .+. ++...+++...+++|...=-..
T Consensus 106 ~~~~~ly~~vYt~-l-----KR~t~~-~~~lG~~~Ga~ppL~Gw~Av------tg~--~~~~~~~Lf~~~~~Wq~pHf~~ 170 (341)
T PLN02776 106 AGNILLYAFVYTP-L-----KQIHPA-NTWVGAVVGAIPPLMGWAAA------SGQ--LDAGAMVLAAALYFWQMPHFMA 170 (341)
T ss_pred HHHHHHHHHHHHh-H-----ccCCch-hHHHHHHHHHHHHHHHHHHH------cCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 333443 457883 4 998855 679999998 7777776432 111 2233344445556665422222
Q ss_pred cCCCChHhhHHcCCcccceee--chHhHHHHHHH
Q 029089 98 KDLPDVEGDKEFGLRTLPIIL--GRERVFSIAVN 129 (199)
Q Consensus 98 ~di~DvegD~~~G~~Tl~v~l--G~~~a~~l~~~ 129 (199)
=...|.|-|++.|++.+|+.- |++.+..+...
T Consensus 171 la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~ 204 (341)
T PLN02776 171 LAYMCRDDYAAGGYRMLSLADATGRRTALVALRN 204 (341)
T ss_pred HHHHhHHHHHhCCCcccCccccchHHHHHHHHHH
Confidence 234566789999999999866 45555555433
No 49
>PRK08238 hypothetical protein; Validated
Probab=97.39 E-value=0.011 Score=54.70 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=67.2
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLL 81 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (199)
+|+.+++..+ +......+..++...+||.++ ||++.+++++.+..++..++.|.... + . +.+.|
T Consensus 285 ~~~~l~~~l~-~~~~~~~~~~~~~~~~Ys~~l-----Kr~~~~~~~~la~~~~lr~~~G~~a~------~--~--~~s~w 348 (479)
T PRK08238 285 AGLALALALG-PAFLLVLLAYLALTLAYSLRL-----KRKVLVDVLTLAALYTLRIIAGAAAI------G--V--ALSFW 348 (479)
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhhHHh-----cCCccccchHHHHHHHHHHHHHHHHh------c--c--CHHHH
Confidence 4666777666 455555566777888999545 99999999999999998888885421 2 1 23334
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCC
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGL 111 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~ 111 (199)
+. .+.+++...+++.|...|+++|++.|.
T Consensus 349 ll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 349 LL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 43 233444778899999999999999986
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=96.89 E-value=0.0049 Score=53.51 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=40.5
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 029089 2 MGVAMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYF 62 (199)
Q Consensus 2 lgl~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~ 62 (199)
+|+.+++..+ +.........++..++||.++ ||+|.+++++++..++..+..|..
T Consensus 105 ~~l~la~~l~-~~~~~~~~~~~~~~~~Ys~~l-----K~~~~~d~l~va~~~~lr~~~G~~ 159 (295)
T PRK12324 105 ASLALAYLLS-PKLALVLLVYLVLNLAYSFKL-----KHQPVLDVFCIASGFVLRAIAGGV 159 (295)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHh-----cCCchhhHHHHHHHHHHHHHHHHH
Confidence 3556666555 344444456777889999544 999999999999999988877764
No 51
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.043 Score=47.71 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=55.2
Q ss_pred HHHHhcCCCCCccccCCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 029089 25 VGAAYSLDLPLLRWKGSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDV 103 (199)
Q Consensus 25 ~~~~YS~~lpplrlKr~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~Dv 103 (199)
=...||.++ ||+.. =|..++-.-| .|+.+|.... .+..+ ...+...+.+|+|.-.=--.=.+.-.
T Consensus 135 Yv~vYT~~l-----KR~T~-~NiviGg~aGa~PpliGwaAv------tg~~~--~~a~~Lf~IiF~WtPpHfwALAl~~~ 200 (304)
T COG0109 135 YVVVYTLWL-----KRRTP-QNIVIGGFAGAMPPLIGWAAV------TGSIS--LGAILLFAIIFLWTPPHFWALALKYK 200 (304)
T ss_pred Hhhhhhhhc-----cCCcc-cceeeeeccccccccceeeee------eCCCC--chHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456799878 99884 5667777776 7888886431 11122 23333444556653111111112223
Q ss_pred HhhHHcCCcccceeechHhHHHHHHHH
Q 029089 104 EGDKEFGLRTLPIILGRERVFSIAVNM 130 (199)
Q Consensus 104 egD~~~G~~Tl~v~lG~~~a~~l~~~l 130 (199)
|.=+++|+.-+|+.-|++.+.+-...-
T Consensus 201 ~DY~~AgiPMlPvv~G~~~t~~~I~~y 227 (304)
T COG0109 201 DDYKAAGIPMLPVVKGERRTKRQILLY 227 (304)
T ss_pred HHHHHcCCCcccccccHHHHHHHHHHH
Confidence 344789999999999999999865433
No 52
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=94.79 E-value=0.14 Score=44.07 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAALLWR 167 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 167 (199)
..++..-..+-.=+|.+-|.+.|+++.+.|+|++.-.++.. +-..........+..+...+.. .+. -...+.-+.+
T Consensus 234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f~a~~ia~La~aG~~s~q~~py--y~~-lg~~~~~L~~ 309 (353)
T KOG1381|consen 234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-FGAAQIASLAAAGIASDQTWPY--YAA-LGAVAARLGS 309 (353)
T ss_pred hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-hhHHHHHHHHHhhhccCCCchH--HHH-HHHHHHHHHh
Confidence 34566666677789999999999999999999988777653 3333333444556665543321 111 2344555677
Q ss_pred HhhhcCCCCch-HHHHHHHHHHH
Q 029089 168 KAQTVDLTDPP-SMQSFYMFIFK 189 (199)
Q Consensus 168 ~~~~~d~~~~~-~~~~~y~~~w~ 189 (199)
+-..+|.++++ ..+.|....|-
T Consensus 310 ~i~~vdiDnp~dC~k~f~sN~nt 332 (353)
T KOG1381|consen 310 QIYKVDIDNPSDCWKKFKSNSNT 332 (353)
T ss_pred heeeeecCChHHHHHHHHhcCcc
Confidence 88899998844 55666666654
No 53
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=93.94 E-value=0.56 Score=40.27 Aligned_cols=52 Identities=25% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCC---cccceeec-hHhHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLPIILG-RERVFSIAVNMLLT 133 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~v~lG-~~~a~~l~~~l~~~ 133 (199)
+.....+....+...+||+.|+|-||++-+ |.+|.--- +|.+..+...+..+
T Consensus 51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~ 106 (289)
T COG0382 51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLL 106 (289)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 333445556788899999999999999887 44554333 33344433333333
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.91 E-value=0.84 Score=38.81 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeec---hHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILG---RERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~ 134 (199)
+..++...+-..+||+-|.|-|+++ +++=|..-| +|.+......+..++
T Consensus 44 l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~ 95 (279)
T PRK12884 44 LTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG 95 (279)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3345556777899999999999998 677777767 455555554444443
No 55
>PRK13592 ubiA prenyltransferase; Provisional
Probab=93.49 E-value=3.5 Score=35.99 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089 79 QLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
.........++...+-.++||..|+|-||.+. ..=|+ +.-+|.+......+...+
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~-P~RPLPsG~VS~~~A~~~si~L~~~~ 104 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLF-PHRALPSGRVKKKDLAIALSFIVAVS 104 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC-CCCCCCcCCCCHHHHHHHHHHHHHHH
Confidence 33333344555577788999999999997654 33343 344566665555554444
No 56
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=93.00 E-value=1.6 Score=37.80 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC-cccceeec---hHhHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPIILG---RERVFSIAV 128 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v~lG---~~~a~~l~~ 128 (199)
+..++...+-..+||+-|+|=|+++.+ ++=|..=| ++.+..+..
T Consensus 52 ~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~ 99 (289)
T PLN02809 52 CGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLG 99 (289)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 344555777789999999999998765 45666666 444444333
No 57
>PRK11383 hypothetical protein; Provisional
Probab=92.21 E-value=1.7 Score=33.80 Aligned_cols=84 Identities=13% Similarity=0.246 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcccc--CCCchhHHHHHHHHH-HHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHH
Q 029089 17 ICFIIWWIVGAAYSLDLPLLRWK--GSPLMAAVTIIILNG-LLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAA 93 (199)
Q Consensus 17 ~~~~~~~~~~~~YS~~lpplrlK--r~p~lg~l~v~~~~g-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (199)
..++.+.+..+.|- +-.|-| ..| ..++..+..|. .+..++.+.. +..+.+..++.......++...+-.+
T Consensus 46 ~vl~lglF~avs~Q---K~vRD~~egi~-vt~~f~~~cw~a~l~~i~LL~i---GLwNA~l~lsEKGfY~~af~lsLFga 118 (145)
T PRK11383 46 AVLVLGLFSAASYQ---KTVRDKYEGIP-TTSIYYMTCLTVFIISVALLMV---GLWNATLLLSEKGFYGLAFFLSLFGA 118 (145)
T ss_pred HHHHHHHHHHHHHH---HHHhhcccCCC-hhHHHHHHHHHHHHHHHHHHHH---HHhcCCcchhhhhHHHHHHHHHHHHH
Confidence 33445555555555 333555 667 46678888776 4444444332 33455556666666666666555678
Q ss_pred HHHHcCCCChHhhH
Q 029089 94 IAFSKDLPDVEGDK 107 (199)
Q Consensus 94 ~~~~~di~DvegD~ 107 (199)
+.+-||+||.+.++
T Consensus 119 i~vQKn~RD~~~~~ 132 (145)
T PRK11383 119 VAVQKNIRDAGINP 132 (145)
T ss_pred HHHHhhhhhhhhcc
Confidence 89999999996554
No 58
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=92.00 E-value=0.92 Score=39.43 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
.++...+...+||+-|.|-||++-+ |.+| -++.++.+..+...+..++
T Consensus 55 ~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 55 FCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 3445677889999999999999622 3333 3456666666665555554
No 59
>PRK13595 ubiA prenyltransferase; Provisional
Probab=91.96 E-value=4.8 Score=35.02 Aligned_cols=48 Identities=25% Similarity=0.103 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLT 133 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~ 133 (199)
.+..-.+.....+||+-|.|-|+++-++ =++ ++.++.+..+...+...
T Consensus 54 ~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~ 104 (292)
T PRK13595 54 YLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLL 104 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHH
Confidence 3344457788999999999999877654 333 45556555544444433
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=91.53 E-value=5 Score=34.07 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeec---hHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILG---RERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG---~~~a~~l~~~l~~~~ 134 (199)
+..++...+-..+||+-|.|-|+++. ++=|..-| +|.+......+..++
T Consensus 45 l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g 96 (276)
T PRK12882 45 AAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG 96 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 33445567778999999999999754 55555444 566665555555544
No 61
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=91.51 E-value=1.9 Score=37.45 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCChHhhHHcCC-cccce-eechHhHHHHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI-ILGRERVFSIAVNMLLTAYGA 137 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v-~lG~~~a~~l~~~l~~~~y~~ 137 (199)
...+...+....||+-|.|-|++++. |.+|. ++.+|.+......+..++.+.
T Consensus 62 ~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~l 115 (306)
T TIGR02056 62 SGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAI 115 (306)
T ss_pred HHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 33555777899999999999997763 22322 455677776666555555333
No 62
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=90.54 E-value=2.7 Score=35.76 Aligned_cols=27 Identities=26% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL 111 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~ 111 (199)
+..++...+....||..|.|-|+.+..
T Consensus 43 ~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 43 LITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 445566778899999999999997654
No 63
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=89.76 E-value=5.6 Score=32.61 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCChHhhHHc-CCcccceeechHh
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEF-GLRTLPIILGRER 122 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~-G~~Tl~v~lG~~~ 122 (199)
.++........||.-|.|-|+.+ +++.-|..-|+-+
T Consensus 32 ~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 32 VFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 34557788899999999999996 3344444344333
No 64
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=89.25 E-value=3.9 Score=34.84 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
+..++...+-..+||+-|.|-|+++. ++=|. ++.+|.+......+..++
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~ 95 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVG 95 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence 34455577778999999999999764 33333 455677766666555554
No 65
>PRK08238 hypothetical protein; Validated
Probab=89.08 E-value=3.6 Score=38.15 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC-cccc---eeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLP---IILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~---v~lG~~~a~~l~~~l~~~~y 135 (199)
+..++...+..++||+-|+|-||++-+ +.=| =++..+.+..+...+..++.
T Consensus 233 ~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~ 287 (479)
T PRK08238 233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGL 287 (479)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 334556788899999999999999732 3334 35566667666666555553
No 66
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=88.47 E-value=8.2 Score=33.28 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=16.1
Q ss_pred HHHcCCCChHhhHHcCCcc
Q 029089 95 AFSKDLPDVEGDKEFGLRT 113 (199)
Q Consensus 95 ~~~~di~DvegD~~~G~~T 113 (199)
-.+||+-|.|.||++.+|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 3479999999999988775
No 67
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=88.27 E-value=6.6 Score=33.56 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
+..++...+-..+||+-|.|-|+++.+ |.+| -++.+|.+......+..++
T Consensus 43 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 96 (279)
T PRK12869 43 IGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG 96 (279)
T ss_pred HHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence 334455777799999999999998653 4444 3456666666555444443
No 68
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=87.57 E-value=13 Score=31.58 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCccccee---echHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPII---LGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~---lG~~~a~~l~~~l~~~~ 134 (199)
++...+-..+||+-|.|-|+.+. ++=|.. +-+|.+......+..++
T Consensus 47 ~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~~g 95 (277)
T PRK12883 47 YLGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFAVG 95 (277)
T ss_pred HHHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 33356778999999999999754 555555 44566666555444443
No 69
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=87.41 E-value=5.2 Score=34.87 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089 96 FSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 96 ~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
-+||+.|+|-|+.+ +++-|+ ++-+|.+..+...+..++
T Consensus 71 ~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~~la 111 (308)
T PRK12887 71 GLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITGILA 111 (308)
T ss_pred HHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHHHHH
Confidence 39999999999965 477765 444555555554444443
No 70
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=87.00 E-value=3.2 Score=35.40 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
.+...+-..+||+-|.|.|++++ ++=|+ ++-+|.+..+...+..++
T Consensus 48 ~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 48 PLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 34466778999999999999765 33333 455666666665555444
No 71
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=85.90 E-value=3.9 Score=34.87 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcC---Ccccce-eechHhHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFG---LRTLPI-ILGRERVFSIAVN 129 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G---~~Tl~v-~lG~~~a~~l~~~ 129 (199)
+..++...+-...||+-|.|-|+++. .|.+|. ++.+|.+..+...
T Consensus 43 l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~ 91 (282)
T TIGR01475 43 IAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence 44556678888999999999999873 244443 4566666665543
No 72
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.62 E-value=9.7 Score=33.60 Aligned_cols=46 Identities=30% Similarity=0.282 Sum_probs=31.2
Q ss_pred HHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHHHHHHHH
Q 029089 93 AIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 93 ~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~~y~~~~ 139 (199)
+-..+||+-|.|-|+.+. ||=|. ++-+|.+......+..++.+...
T Consensus 65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~ 113 (331)
T PRK12392 65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGV 113 (331)
T ss_pred HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999765 44444 44577777777766666543333
No 73
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=84.43 E-value=5.9 Score=34.44 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLT 133 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~ 133 (199)
+..++...+-..+||+-|.|-|+++.+ |.=|. ++.++.+..+...+..+
T Consensus 51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~ 103 (294)
T PRK12873 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLL 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 444556778889999999999998776 35554 44555555555444444
No 74
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.38 E-value=14 Score=31.91 Aligned_cols=49 Identities=27% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCCChHhhHHcCCc-ccce---eechHhHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEGDKEFGLR-TLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~DvegD~~~G~~-Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
...+...+-..+||+-|.|=|+++.+. .=|. ++.++.+..+...+..++
T Consensus 54 g~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~ 106 (290)
T PRK12870 54 GALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCA 106 (290)
T ss_pred HHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 344556777899999999999865432 3333 445555555554444443
No 75
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=84.26 E-value=20 Score=30.91 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
....+...+-..+||+-|.|-|+++.+ |.+| -++.+|.+..+...+..++
T Consensus 51 l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g 104 (296)
T PRK04375 51 LGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG 104 (296)
T ss_pred HHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 334445677789999999999998543 3333 3556677766655555443
No 76
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.18 E-value=6 Score=33.84 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
.++...+-..+||+-|.|-|+++.+ ++=|. ++-+|.+..+...+..++
T Consensus 54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~ 105 (285)
T PRK12847 54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIA 105 (285)
T ss_pred HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3455667789999999999987554 23343 445566655554444443
No 77
>PLN00012 chlorophyll synthetase; Provisional
Probab=83.82 E-value=12 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCChHhhHHcCCcccce---eechHhHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEFGLRTLPI---ILGRERVFSIAVNMLLT 133 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~G~~Tl~v---~lG~~~a~~l~~~l~~~ 133 (199)
..+...+-.++||+-|.|-|++++ ++=|+ ++.++.+......+...
T Consensus 132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~ 180 (375)
T PLN00012 132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLG 180 (375)
T ss_pred HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence 334456678999999999998875 33343 34455565544344333
No 78
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=83.32 E-value=6.9 Score=33.48 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCCChHhhHHcCC-cccce---eechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDKEFGL-RTLPI---ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v---~lG~~~a~~l~~~l~~~~ 134 (199)
..+...+-...||+-|.|-|+++.+ +.=|. ++.++.+..+...+..++
T Consensus 49 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~ 100 (281)
T TIGR01474 49 AILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVA 100 (281)
T ss_pred HHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3444677789999999999997654 23343 344566665555444443
No 79
>PRK13591 ubiA prenyltransferase; Provisional
Probab=82.80 E-value=24 Score=31.01 Aligned_cols=28 Identities=14% Similarity=-0.095 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccce
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPI 116 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v 116 (199)
.+.+.+....||.-|+|.|+.+ +...|.
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN-~P~r~~ 95 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVN-RSELIG 95 (307)
T ss_pred HHHHHHHHHHhhhccchhhhcc-Cccccc
Confidence 4446788999999999999875 444444
No 80
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.89 E-value=33 Score=29.55 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCChHh-----hHHcCCcccce-eechHhHHHHHHHHHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEG-----DKEFGLRTLPI-ILGRERVFSIAVNMLLTAYGAGVVAG 142 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dveg-----D~~~G~~Tl~v-~lG~~~a~~l~~~l~~~~y~~~~~~~ 142 (199)
...+...+..+.||.-|.+- |+..+.|+++- .+-+|.+......++.++.+..+.+.
T Consensus 36 ~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~ 98 (284)
T TIGR00751 36 TAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLA 98 (284)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778889999999844 34334455443 34456777777666666544444443
No 81
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=81.71 E-value=12 Score=32.58 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
..++...+-..+||+-|.|-|+++.+ |.+| =++.++.+..+...+...+
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g 107 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAG 107 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 44555778899999999999987654 3333 3455666666655454444
No 82
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=80.48 E-value=10 Score=33.01 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCChHhhHHcC-Ccccc-eeechHhHHHHHHHHHHHH
Q 029089 90 FNAAIAFSKDLPDVEGDKEFG-LRTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 90 ~~~~~~~~~di~DvegD~~~G-~~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
...+-..+||+-|.|.|++++ .|.+| -++.+|.+......+..++
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~ 123 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLG 123 (314)
T ss_pred HHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHH
Confidence 456778999999999999754 22222 2566677777666655554
No 83
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=80.08 E-value=39 Score=29.28 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHcCCCChHhhHHc-----CC-----cccc---eeechHhHHHHHHHHHHHHH
Q 029089 91 NAAIAFSKDLPDVEGDKEF-----GL-----RTLP---IILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 91 ~~~~~~~~di~DvegD~~~-----G~-----~Tl~---v~lG~~~a~~l~~~l~~~~y 135 (199)
..+ ..+||+-|.|-|+++ ++ ++=| -++-+|.+..+...+..++.
T Consensus 55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~ 111 (297)
T PRK12871 55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTS 111 (297)
T ss_pred HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHH
Confidence 444 599999999999753 21 2222 35666777776666665553
No 84
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=80.06 E-value=38 Score=29.16 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCChHhhHHcCCcc------cce-eechHhHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEGDKEFGLRT------LPI-ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~DvegD~~~G~~T------l~v-~lG~~~a~~l~~~l~~~~ 134 (199)
...+...+-...||.-|.|-|+.+..|| ++. ++-+|++......+..++
T Consensus 48 ~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia 103 (296)
T PRK05951 48 GYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA 103 (296)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence 3444567788999999966666554332 221 355677777766655554
No 85
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=79.90 E-value=9.9 Score=32.35 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC---cccce-eechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLPI-ILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~v-~lG~~~a~~l~~~l~~~~ 134 (199)
+..++...+-..+||+-|.|-|+++.+ |.+|. ++.+|.+..+...+..++
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g 95 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLG 95 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 344555677789999999999997543 43333 455666766655554443
No 86
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=78.06 E-value=16 Score=31.61 Aligned_cols=49 Identities=2% Similarity=-0.120 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCChHhhHHcCC----cccceeechHhHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEGDKEFGL----RTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~DvegD~~~G~----~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
.+++...+-..+||+-|.|=|+++-+ .--.=++.++.+......+..++
T Consensus 45 ~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~ 97 (286)
T PRK12895 45 AAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIF 97 (286)
T ss_pred HHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34555677789999999999998832 22334556666666555554443
No 87
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=77.80 E-value=13 Score=31.75 Aligned_cols=47 Identities=21% Similarity=0.219 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l~~~~ 134 (199)
++...+-..+||+-|.|-|+++.+ |.+| =++.++.+......+..++
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 444667789999999999986543 3333 2445556655555544443
No 88
>PLN02878 homogentisate phytyltransferase
Probab=76.36 E-value=11 Score=32.62 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccceeech---HhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGR---ERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~---~~a~~l~~~l~~~~ 134 (199)
.+.|.-+--+||+.|+|=|| .|+...|+-=|+ |.+..+...+..++
T Consensus 33 l~~niyivglNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~~~~~lg 81 (280)
T PLN02878 33 LLMNIYIVGLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVTSFAIMS 81 (280)
T ss_pred Hhhhhheechhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33466666789999999995 667888887664 55555544444443
No 89
>PLN02776 prenyltransferase
Probab=76.27 E-value=36 Score=30.31 Aligned_cols=49 Identities=12% Similarity=-0.022 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC----cccceeechHhHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL----RTLPIILGRERVFSIAVNMLLT 133 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~----~Tl~v~lG~~~a~~l~~~l~~~ 133 (199)
+..++...+-..+||+-|.|-|+++.+ ....=++.++.+..+...+..+
T Consensus 36 lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~ 88 (341)
T PLN02776 36 AGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAA 88 (341)
T ss_pred HHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 445555777789999999999988554 3334455666666555444443
No 90
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=75.10 E-value=1.4 Score=35.99 Aligned_cols=39 Identities=44% Similarity=0.565 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCChHhhH----------HcCCcccceeechHhHHHHH
Q 029089 89 IFNAAIAFSKDLPDVEGDK----------EFGLRTLPIILGRERVFSIA 127 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD~----------~~G~~Tl~v~lG~~~a~~l~ 127 (199)
-+..+..+.||++|+.+|. +.|+.|+|.....+......
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~ 205 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYA 205 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHH
Confidence 3467789999999999988 89999999998854444443
No 91
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=74.80 E-value=17 Score=31.28 Aligned_cols=42 Identities=19% Similarity=-0.025 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC-cccceeec---hHhHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPIILG---RERVFSI 126 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v~lG---~~~a~~l 126 (199)
+..++...+-..+||+-|.|-|+++-+ +.=|..=| ++.+...
T Consensus 49 l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 49 MAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence 334444566678999999999997753 12354445 5555444
No 92
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=74.22 E-value=59 Score=28.32 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCCChH--hhHHcCCcccceee-chHhHHHHHHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVE--GDKEFGLRTLPIIL-GRERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dve--gD~~~G~~Tl~v~l-G~~~a~~l~~~l~~~~y~~~~ 139 (199)
...+...+....||..|.+ .|++. .+..+-.. .+|...++...++.++-+..+
T Consensus 56 ~~~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl 111 (304)
T PRK07419 56 AAILILAWENLSNDVFDADTGIDKNK-FHSVVNLTGNKSLVFWLANLFLLLGLLGIL 111 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccc-ccCcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778999999988 57641 11221211 356666666555555543333
No 93
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=73.00 E-value=21 Score=31.22 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCc-ccc---eeechHhHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLR-TLP---IILGRERVFSIAVNML 131 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~-Tl~---v~lG~~~a~~l~~~l~ 131 (199)
+..++...+-...||+-|.|-|++..+. .=| =++.++.+........
T Consensus 79 l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 129 (314)
T PRK12878 79 VGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQA 129 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 4445556777899999999999875421 123 3344566654444443
No 94
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=72.70 E-value=61 Score=27.82 Aligned_cols=44 Identities=16% Similarity=0.017 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC---cccce-eechHhHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLPI-ILGRERVFSIAV 128 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~v-~lG~~~a~~l~~ 128 (199)
..+.+...+-..+||+-|.|-|+++.+ |.+|. ++.+|.+.....
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~ 93 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGAL 93 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 444555677789999999999998853 33332 344455544443
No 95
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=71.46 E-value=66 Score=27.68 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCChHh--hHHcCCcccceeec-hHhHHHHHHHHHHHHHHHHH
Q 029089 86 IMPIFNAAIAFSKDLPDVEG--DKEFGLRTLPIILG-RERVFSIAVNMLLTAYGAGV 139 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dveg--D~~~G~~Tl~v~lG-~~~a~~l~~~l~~~~y~~~~ 139 (199)
...+.-.+..+.||..|.+- |+++ .++..-..| +|...+....+..++.+..+
T Consensus 43 ~~l~~q~~~N~~Ndy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~ 98 (285)
T TIGR02235 43 AAILILAWINLTNDVFDSDTGIDRFK-LHSIVNLTGSRSLVFWLANFFLLIGLVGIA 98 (285)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCccc-cCCcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33445677889999999877 6642 122222222 34444444444444433333
No 96
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=70.96 E-value=30 Score=29.82 Aligned_cols=43 Identities=14% Similarity=-0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCC---cccc-eeechHhHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGL---RTLP-IILGRERVFSIAVNM 130 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~---~Tl~-v~lG~~~a~~l~~~l 130 (199)
.+...+-..+||+-|.|-|+++-+ |-+| =++-+|.+..+...+
T Consensus 57 ~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~ 103 (291)
T PRK12874 57 VSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLN 103 (291)
T ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 334555578899999999998853 3222 344455554444333
No 97
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=69.13 E-value=29 Score=30.30 Aligned_cols=46 Identities=7% Similarity=-0.082 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCC-cccceeec---hHhHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGL-RTLPIILG---RERVFSIA 127 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~-~Tl~v~lG---~~~a~~l~ 127 (199)
...+.+...-.+-..+||+-|.|=|+++-+ ++=|..-| ++.+....
T Consensus 51 ~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~ 100 (300)
T PRK12876 51 LGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLL 100 (300)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 333445555667789999999999999875 34444334 44444443
No 98
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=68.36 E-value=80 Score=27.42 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCC---cccce-eechHhHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGL---RTLPI-ILGRERVFSIA 127 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~---~Tl~v-~lG~~~a~~l~ 127 (199)
+..++...+-..+||+-|.|=|+++-+ |.+|. ++.++.+..+.
T Consensus 56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 444555677778999999999998742 33332 34555555443
No 99
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=64.90 E-value=48 Score=23.65 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 029089 93 AIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSAL 161 (199)
Q Consensus 93 ~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (199)
+.+.+.+++.- ++.+.|.--+++.-|+| +...++..+|+-...++..++..|....+.+.+++.
T Consensus 20 ~~mtvwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~~lW~a~~ls~~~~~~ 83 (88)
T PF09928_consen 20 AGMTVWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGPSLWIALALSLVWAAF 83 (88)
T ss_pred HHHHHHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 44556666666 88888988888888875 678888999999999999998777665655555544
No 100
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=63.50 E-value=36 Score=21.72 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcCCCC
Q 029089 73 PVVFPKQLLFAAAIMPIFNAAIAFSKDLPD 102 (199)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~~~~di~D 102 (199)
|.+.+....+...+++....+..+.|.+||
T Consensus 24 ~~~l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 24 PLDLSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 445555556666777777888899999998
No 101
>PRK10581 geranyltranstransferase; Provisional
Probab=61.09 E-value=4.1 Score=35.38 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLT 133 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~ 133 (199)
--+..+-.+..|+-|+.| |.+.|+.|+|+..|.+.+...+.-..--
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~ 269 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344667789999999865 4678999999999999888766555444
No 102
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=57.36 E-value=1.3e+02 Score=26.21 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCCChHhhHHcC-----Ccccc-eeechHhHHHHHHHHHHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFG-----LRTLP-IILGRERVFSIAVNMLLTAYGAGVVAGA 143 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G-----~~Tl~-v~lG~~~a~~l~~~l~~~~y~~~~~~~~ 143 (199)
.+...+....||..|.|-|+... .|+++ -.+-+|++.+....++.++.+..+.+..
T Consensus 49 ~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~ 110 (317)
T PRK13387 49 LAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCM 110 (317)
T ss_pred HHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999987755542 23222 2345577777777766666554444443
No 103
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=54.17 E-value=1.4e+02 Score=25.66 Aligned_cols=26 Identities=23% Similarity=-0.020 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCChHhhHHcCCcccce
Q 029089 91 NAAIAFSKDLPDVEGDKEFGLRTLPI 116 (199)
Q Consensus 91 ~~~~~~~~di~DvegD~~~G~~Tl~v 116 (199)
+.+..-+||.-|.|-|+.+.+|.=|.
T Consensus 47 n~am~~~Ndy~D~~~d~dn~r~~g~~ 72 (282)
T PRK13105 47 NLAMYGINDVFDYESDLRNPRKGGVE 72 (282)
T ss_pred HHHHHhhhhhhhhhcCCCCcccCCCC
Confidence 34334559999999999987765543
No 104
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=52.51 E-value=80 Score=22.39 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=48.2
Q ss_pred HHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 029089 95 AFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALA 162 (199)
Q Consensus 95 ~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (199)
+-+.+...-.|+-+.|+-.+.+.-|.| +...++..+|+-...+++.++..|........|++..
T Consensus 30 M~vWE~arPggnpR~G~LrfeTTRGDR----LFisLLgsAyIhLAWlGLvg~nlWwa~alS~~yaigv 93 (97)
T COG5477 30 MAVWEYARPGGNPRVGILRFETTRGDR----LFISLLGSAYIHLAWLGLVGENLWWALALSVVYAIGV 93 (97)
T ss_pred HHHHHHhCCCCCCceeeEEeeecccce----ehHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Confidence 455566666677777877777666664 6778889999999999999999888777777776544
No 105
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=40.69 E-value=7 Score=30.71 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCChHhhHHc--CCcccceeechHh
Q 029089 89 IFNAAIAFSKDLPDVEGDKEF--GLRTLPIILGRER 122 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD~~~--G~~Tl~v~lG~~~ 122 (199)
-......+.||+.|.++|.+. |+.|+|..+-.++
T Consensus 151 ~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 151 ALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 346677899999999999999 7888888765544
No 106
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=39.55 E-value=2.4e+02 Score=23.93 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCChH--hhHH---cCCcccce-eechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVE--GDKE---FGLRTLPI-ILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~Dve--gD~~---~G~~Tl~v-~lG~~~a~~l~~~l~~~~y 135 (199)
+...+...+....||.-|.| -|++ .+.|++|- ++-+|.+......+..++.
T Consensus 45 l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~ 101 (293)
T PRK06080 45 LAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAA 101 (293)
T ss_pred HHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 33444567788999999995 3532 22233322 3446776666655555543
No 107
>PLN02922 prenyltransferase
Probab=38.62 E-value=2.7e+02 Score=24.32 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCCChHh--hHHcCCcccceee-chHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEG--DKEFGLRTLPIIL-GRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~Dveg--D~~~G~~Tl~v~l-G~~~a~~l~~~l~~~~ 134 (199)
+...++-.+..+.||.-|.+- |++. +++..-.. -+|....+...++.++
T Consensus 58 l~~~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~s~~~v~~~~~~~~~la 109 (315)
T PLN02922 58 LSSVLVITWLNLSNDAYDADTGVDKNK-KESVVNLVGSRRGVLAAAIGCLALG 109 (315)
T ss_pred HHHHHHHHHHHHHhhhhHhccCcCccc-CCCCCCcccCHHHHHHHHHHHHHHH
Confidence 344555777889999999776 4322 12211222 4444545444444444
No 108
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=34.25 E-value=12 Score=32.87 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCChHhh-----------HHcCCcccceeechHhHHH
Q 029089 90 FNAAIAFSKDLPDVEGD-----------KEFGLRTLPIILGRERVFS 125 (199)
Q Consensus 90 ~~~~~~~~~di~DvegD-----------~~~G~~Tl~v~lG~~~a~~ 125 (199)
+..+-++..|+-|+.|| .+.|++|+|+.++.+++..
T Consensus 206 lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 206 LGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred hhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 35677999999999985 5568899999999986665
No 109
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=33.78 E-value=9.8 Score=31.98 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhH
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERV 123 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a 123 (199)
+..+-.+.+|+.|..+ |.+.|+.|+|+..+.+++
T Consensus 178 lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~ 222 (260)
T PF00348_consen 178 LGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERA 222 (260)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhC
No 110
>CHL00151 preA prenyl transferase; Reviewed
Probab=33.04 E-value=13 Score=32.48 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
+..+-++.+|+-|+.| |.+.|+.|+|+.++.+.
T Consensus 207 lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 207 LGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 4667789999999876 66789999999988653
No 111
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=31.99 E-value=15 Score=30.82 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeec
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILG 119 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG 119 (199)
+..+-.+.+|+.|+.+ |.++|+.|+|+..+
T Consensus 181 lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 181 LGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
No 112
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=30.95 E-value=13 Score=32.35 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChH-----------hhHHcCCcccceeechH
Q 029089 90 FNAAIAFSKDLPDVE-----------GDKEFGLRTLPIILGRE 121 (199)
Q Consensus 90 ~~~~~~~~~di~Dve-----------gD~~~G~~Tl~v~lG~~ 121 (199)
+..+-.+.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 202 lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~ 244 (319)
T TIGR02748 202 VGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAME 244 (319)
T ss_pred HHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhc
No 113
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=30.84 E-value=1.3e+02 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHHHHHHHHH--Hhcch-hHHHHHHHHHHHHHHHHHHHHhhhc
Q 029089 96 FSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAYGAGVVAG--ATSPF-LPCKIVAIIGHSALAALLWRKAQTV 172 (199)
Q Consensus 96 ~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~~~~~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~ 172 (199)
--++.+=.++|.+...-|+-=..-+.+...++..++...-+..+.++ ...|. .+++..+++..-+....-|+|+.|.
T Consensus 54 ~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~Yw~kA~R~ 133 (173)
T PF12046_consen 54 EQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIFYWQKAGRP 133 (173)
T ss_pred HhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhhhhhcCCCc
Confidence 45677888889999888888777776666655555444333333333 22332 2333333333334445558999888
Q ss_pred C
Q 029089 173 D 173 (199)
Q Consensus 173 d 173 (199)
+
T Consensus 134 E 134 (173)
T PF12046_consen 134 E 134 (173)
T ss_pred c
Confidence 7
No 114
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=4e+02 Score=23.41 Aligned_cols=50 Identities=4% Similarity=-0.085 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcC----CcccceeechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFG----LRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G----~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
+...+-..+-..+|+.-|.|=|++.. +.+..-++-++.+......+..++
T Consensus 59 ~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g 112 (304)
T COG0109 59 LGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAG 112 (304)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 44455577888999999999998764 445556777788877776666665
No 115
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=28.94 E-value=4e+02 Score=23.39 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCCChH------hhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVE------GDKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~Dve------gD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
..+.++.......||.-|.+ ||-+.+.+.+-++=+.|+...+...+...+
T Consensus 51 i~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~ 106 (303)
T COG1575 51 IAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLA 106 (303)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHH
Confidence 33455577888999988754 334555566666666666665554444443
No 116
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=28.23 E-value=58 Score=21.84 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcc---ccCCCchhH
Q 029089 15 LVICFIIWWIVGAAYSLDLPLLR---WKGSPLMAA 46 (199)
Q Consensus 15 ll~~~~~~~~~~~~YS~~lpplr---lKr~p~lg~ 46 (199)
+...+..+.+...+|....|.+| +|+.|++|+
T Consensus 17 ~a~wG~aa~~~v~~f~~~vPr~q~dil~KIP~~G~ 51 (64)
T PF09796_consen 17 LALWGGAAGAAVLFFTSGVPRFQRDILQKIPVFGS 51 (64)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHhCCcccc
Confidence 33344555666677777788886 688887765
No 117
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.51 E-value=2.9e+02 Score=23.13 Aligned_cols=48 Identities=23% Similarity=0.092 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--HHHHHhhhc
Q 029089 125 SIAVNMLLTAYGAGVVAGATSPFLPCKIVAIIGHSALAA--LLWRKAQTV 172 (199)
Q Consensus 125 ~l~~~l~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~l~~~~~~~ 172 (199)
++....++...++.+++++....++.+.++++.-.+++. .+-+|+++.
T Consensus 29 ~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra 78 (224)
T PF13829_consen 29 WLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRA 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555544444433 334666544
No 118
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=26.50 E-value=26 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChH-----------hhHHcCCcccceeechHh
Q 029089 90 FNAAIAFSKDLPDVE-----------GDKEFGLRTLPIILGRER 122 (199)
Q Consensus 90 ~~~~~~~~~di~Dve-----------gD~~~G~~Tl~v~lG~~~ 122 (199)
+..+-.+.+|+.|.. .|.+.|+.|+|+.+..+.
T Consensus 206 lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~ 249 (322)
T TIGR02749 206 LGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALEE 249 (322)
T ss_pred HHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHhc
No 119
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=25.67 E-value=52 Score=19.22 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.4
Q ss_pred CChHhhHHcCCcccceeechHhHHHHH
Q 029089 101 PDVEGDKEFGLRTLPIILGRERVFSIA 127 (199)
Q Consensus 101 ~DvegD~~~G~~Tl~v~lG~~~a~~l~ 127 (199)
.=+.||...|++.+|- +|++++..+.
T Consensus 8 ~~L~GD~~dni~Gv~g-iG~ktA~~ll 33 (36)
T smart00279 8 AILVGDYSDNIPGVKG-IGPKTALKLL 33 (36)
T ss_pred HHHhCcCCCCCCCCCc-ccHHHHHHHH
Confidence 3456888888888885 8999998764
No 120
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.60 E-value=2.4e+02 Score=20.75 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCC-ccccCCC
Q 029089 11 RSPPLVICFIIWWIVGAAYSLDLPL-LRWKGSP 42 (199)
Q Consensus 11 g~~~ll~~~~~~~~~~~~YS~~lpp-lrlKr~p 42 (199)
|+|+++....+.+......+...++ .++-..|
T Consensus 2 GS~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyP 34 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWILLNILAPPRPAFDPYP 34 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Confidence 8888888877777777778764333 3566666
No 121
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=25.00 E-value=3.6e+02 Score=23.57 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhh
Q 029089 183 FYMFIFKASGST 194 (199)
Q Consensus 183 ~y~~~w~lf~~~ 194 (199)
||.|.|.+|++.
T Consensus 179 FYlf~~lnFFl~ 190 (296)
T PF10361_consen 179 FYLFAWLNFFLV 190 (296)
T ss_pred HHHHHHHHHHee
Confidence 899999999874
No 122
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=24.73 E-value=3.1e+02 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=7.9
Q ss_pred CCchHHHHHHH
Q 029089 175 TDPPSMQSFYM 185 (199)
Q Consensus 175 ~~~~~~~~~y~ 185 (199)
++++..++||.
T Consensus 65 ~~~~~~~sFy~ 75 (126)
T PRK06099 65 KNSSKLTAFYR 75 (126)
T ss_pred chHHHHHHHHH
Confidence 56666888885
No 123
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=23.99 E-value=3.5e+02 Score=20.98 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHH
Q 029089 152 IVAIIGHSALAALLWRKAQTVDLTDPPSMQSFYMFIF 188 (199)
Q Consensus 152 ~~~~l~~~~~~~~l~~~~~~~d~~~~~~~~~~y~~~w 188 (199)
+-+.+.|.+........-.+.|.++++-...+-+|+=
T Consensus 88 A~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~q 124 (138)
T PF05514_consen 88 AYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQ 124 (138)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHH
Confidence 4567888888888888888888888777777777653
No 124
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=22.44 E-value=2.3e+02 Score=24.68 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 81 LFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
.-+.+.+=++-.+..+-.|+-| +.|.++|+.|....+|...+....-.++.-++
T Consensus 69 ~~~aaavEliH~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af 122 (322)
T COG0142 69 LDLAAAIELIHTASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAF 122 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHH
Confidence 3344556666778888999966 57899999999999999999988877777764
No 125
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.33 E-value=4.7e+02 Score=21.91 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHhcCCCCCccccCCCchhHHHHHHHHHHHHHHHHHH-HHHhhhhCCCCcc-----hHHHHHHHHHHHHHHHHHHHHcCC
Q 029089 27 AAYSLDLPLLRWKGSPLMAAVTIIILNGLLLQFPYFV-HFQKYVLGRPVVF-----PKQLLFAAAIMPIFNAAIAFSKDL 100 (199)
Q Consensus 27 ~~YS~~lpplrlKr~p~lg~l~v~~~~g~~~~~g~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~di 100 (199)
=.|-..+.-.|-||+..++++.++..|+.+..+|+.+ ..|+.. +.|... +........++++++.+-.-....
T Consensus 89 D~~f~qISsv~~RkraVl~Dl~~SalwtflwfvGFc~l~nqwqv-s~p~~~~~~a~saraaIafsffSilsW~~~A~lA~ 167 (233)
T KOG4016|consen 89 DVYFPQISSVKDRKRAVLADLGVSALWAFLWFVGFCFLANQWQV-SKPKENPLGAGSARAAIAFSFFSILSWGGQAVLAF 167 (233)
T ss_pred HhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444334455778889999999999999887778644 344433 222111 122222234455555555555444
Q ss_pred CChHhh
Q 029089 101 PDVEGD 106 (199)
Q Consensus 101 ~DvegD 106 (199)
+|.+-|
T Consensus 168 qR~~~g 173 (233)
T KOG4016|consen 168 QRYRIG 173 (233)
T ss_pred HHHHhc
Confidence 444433
No 126
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=21.41 E-value=2.9e+02 Score=23.16 Aligned_cols=110 Identities=8% Similarity=0.057 Sum_probs=52.4
Q ss_pred hHHHHhccHHHHHHHHHHHHHHHHhcCCCCCccccCCCchhHHHHHHHHH----HHHHHHHHHHHH-----------hhh
Q 029089 5 AMGMMLRSPPLVICFIIWWIVGAAYSLDLPLLRWKGSPLMAAVTIIILNG----LLLQFPYFVHFQ-----------KYV 69 (199)
Q Consensus 5 ~l~~~~g~~~ll~~~~~~~~~~~~YS~~lpplrlKr~p~lg~l~v~~~~g----~~~~~g~~~~~~-----------~~~ 69 (199)
+++.-+....-++...+++.+.+.-+. ||.+ ...+.-++..- +|.+.|++.-.. ...
T Consensus 10 ~LSlkvA~ist~~~l~lgi~~a~~Lar-------~~~~-~k~ll~~lv~LPLVLPPtV~G~~LLi~fgr~g~iG~~l~~~ 81 (225)
T COG4149 10 LLSLKVALISTLLLLPLGIALAYLLAR-------RRFR-GKSLLESLVLLPLVLPPVVLGFLLLVLFGRNGFIGQFLEDW 81 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccCC-cchHHHHHHHccccCCchHHHHHHHHHHcCcCchHHHHHHH
Confidence 344433334444455566777766663 3333 23344444332 456667655211 111
Q ss_pred hCCCCcchH-HHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHH
Q 029089 70 LGRPVVFPK-QLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSI 126 (199)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l 126 (199)
++.+..+++ ...++...+.+=-+.+.+-..+++++.|.+.--+| +|..+....
T Consensus 82 ~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~t----lGas~~~vf 135 (225)
T COG4149 82 FGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAART----LGASRWEVF 135 (225)
T ss_pred cCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH----cCCChhhhh
Confidence 333333443 22333344444345666666677777776655554 455544433
No 127
>PLN02890 geranyl diphosphate synthase
Probab=21.39 E-value=26 Score=32.10 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChHhh-----------HHcCCcccceee
Q 029089 90 FNAAIAFSKDLPDVEGD-----------KEFGLRTLPIIL 118 (199)
Q Consensus 90 ~~~~~~~~~di~DvegD-----------~~~G~~Tl~v~l 118 (199)
+..+-.+.+|+-|+.|| .+.|+.|+|+.+
T Consensus 300 lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~ 339 (422)
T PLN02890 300 LGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILF 339 (422)
T ss_pred HHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHH
No 128
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=20.97 E-value=33 Score=27.88 Aligned_cols=71 Identities=17% Similarity=0.040 Sum_probs=37.8
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhCCCCcchHHHHHHHHHHHHHHHHHHHHcCCCChHhhHHcCCccc
Q 029089 35 LLRWKGSPLMAAVTIIILNGLLLQFPYFVHFQKYVLGRPVVFPKQLLFAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTL 114 (199)
Q Consensus 35 plrlKr~p~lg~l~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl 114 (199)
.+.+||+|..++=..++..+..=....|+|. +...|-..-..+++..+..-+.|-+...=|+..|.-|+
T Consensus 12 ~L~Lkrsp~~rsWsl~~gi~siGl~~~yys~-----------d~~~wK~fyv~~c~fva~~n~edwee~iFdK~kg~V~l 80 (187)
T PF15169_consen 12 RLHLKRSPGIRSWSLLVGIASIGLAAAYYSS-----------DSLLWKLFYVAGCLFVALQNMEDWEEAIFDKSKGKVTL 80 (187)
T ss_pred EEEEEcCCCccchhhHHHHHhcccceeeecC-----------CchHHHHHHHHHHHHHHHhcchhhhheeEeccCCEEEE
Confidence 4678999987775444443322111223221 01222222223444456666777777778998887665
Q ss_pred ce
Q 029089 115 PI 116 (199)
Q Consensus 115 ~v 116 (199)
-.
T Consensus 81 k~ 82 (187)
T PF15169_consen 81 KY 82 (187)
T ss_pred Ee
Confidence 43
Done!