Query 029089
Match_columns 199
No_of_seqs 174 out of 1106
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 68.6 2.9 9.9E-05 35.1 2.8 47 88-134 206-263 (297)
2 3lsn_A Geranyltranstransferase 62.0 1.8 6.3E-05 36.4 0.3 48 87-134 212-270 (304)
3 3lom_A Geranyltranstransferase 62.0 1.9 6.4E-05 36.5 0.4 47 88-134 220-277 (313)
4 3ts7_A Geranyltranstransferase 60.2 1.8 6.2E-05 36.8 -0.0 48 87-134 218-276 (324)
5 3kra_B Geranyl diphosphate syn 58.3 18 0.00061 29.7 5.8 51 85-135 67-117 (274)
6 4f62_A Geranyltranstransferase 58.1 1.5 5E-05 37.3 -1.0 47 88-134 212-269 (317)
7 3p8r_A Geranyltranstransferase 55.5 2.3 7.8E-05 35.8 -0.2 47 88-134 219-276 (302)
8 2h8o_A Geranyltranstransferase 55.5 1.9 6.5E-05 36.9 -0.7 46 89-134 253-309 (335)
9 3uca_A Geranyltranstransferase 54.4 1.8 6E-05 36.9 -1.1 47 88-134 241-298 (324)
10 3llw_A Geranyltranstransferase 53.4 4.1 0.00014 34.4 1.0 48 87-134 219-275 (311)
11 1rtr_A Geranyltranstransferase 51.5 2.4 8.3E-05 35.5 -0.7 47 88-134 208-265 (301)
12 3pde_A Farnesyl-diphosphate sy 50.4 6.5 0.00022 33.1 1.8 47 88-134 215-272 (309)
13 3p8l_A Geranyltranstransferase 49.2 3.6 0.00012 34.6 0.0 47 88-134 216-273 (302)
14 1rqj_A Geranyltranstransferase 49.0 3.1 0.00011 34.8 -0.4 38 90-127 215-263 (299)
15 2j1p_A Geranylgeranyl pyrophos 47.0 3 0.0001 34.8 -0.8 44 88-134 223-266 (293)
16 3npk_A Geranyltranstransferase 38.3 6.3 0.00021 32.9 -0.2 47 88-134 205-260 (291)
17 3qkc_B Geranyl diphosphate syn 32.7 94 0.0032 25.2 6.2 49 85-135 72-120 (273)
18 1cmk_I CAMP-dependent protein 32.2 12 0.0004 19.8 0.3 10 98-107 16-25 (26)
19 3oyr_A Trans-isoprenyl diphosp 31.0 11 0.00036 32.2 0.1 35 88-122 222-267 (345)
20 3aqb_B Component B of hexapren 30.8 7.5 0.00026 32.7 -0.9 36 88-123 201-247 (325)
21 2e8v_A Geranylgeranyl pyrophos 30.4 7.6 0.00026 33.0 -0.9 35 90-124 206-251 (340)
22 3tc1_A Octaprenyl pyrophosphat 29.0 93 0.0032 25.9 5.6 50 85-135 64-113 (315)
23 3ipi_A Geranyltranstransferase 28.3 11 0.00037 31.5 -0.4 38 90-127 199-249 (295)
24 3lk5_A Geranylgeranyl pyrophos 27.6 9.3 0.00032 33.1 -0.9 34 90-123 249-293 (380)
25 1v4e_A Octoprenyl-diphosphate 25.7 8.3 0.00029 32.2 -1.5 37 89-125 195-241 (299)
26 3pko_A Geranylgeranyl pyrophos 25.6 8.1 0.00028 32.8 -1.6 35 89-123 215-260 (334)
27 3apz_A Geranyl diphosphate syn 24.7 1.6E+02 0.0055 24.6 6.4 51 84-135 93-143 (348)
28 3mzv_A Decaprenyl diphosphate 24.3 12 0.00041 31.8 -0.8 37 86-122 208-255 (341)
29 2qis_A Farnesyl pyrophosphate 24.0 7.1 0.00024 33.7 -2.3 35 89-123 255-299 (374)
30 3p8l_A Geranyltranstransferase 24.0 72 0.0025 26.5 4.0 52 84-135 77-129 (302)
31 2q80_A Geranylgeranyl pyrophos 23.5 10 0.00036 31.6 -1.3 33 90-122 181-224 (301)
32 1uby_A FPS, farnesyl diphospha 22.5 6.7 0.00023 33.7 -2.8 35 89-123 248-292 (367)
33 1rtr_A Geranyltranstransferase 22.4 63 0.0021 26.7 3.3 51 85-135 69-120 (301)
34 3oyr_A Trans-isoprenyl diphosp 22.0 1.8E+02 0.0062 24.4 6.2 50 85-135 92-141 (345)
35 3npk_A Geranyltranstransferase 21.7 1.2E+02 0.004 25.0 4.9 53 83-135 65-118 (291)
36 1yhl_A Farnesyl pyrophosphate 21.5 8.9 0.0003 32.8 -2.2 35 89-123 241-285 (362)
37 3tc1_A Octaprenyl pyrophosphat 21.3 14 0.00048 31.0 -0.9 34 89-122 191-235 (315)
38 4dhd_A Polyprenyl synthetase; 21.3 13 0.00045 31.8 -1.2 34 89-122 216-261 (358)
39 3nf2_A Putative polyprenyl syn 21.0 14 0.00047 31.6 -1.1 34 89-122 215-259 (352)
40 3m0g_A Farnesyl diphosphate sy 21.0 1E+02 0.0035 25.4 4.3 53 83-135 66-119 (297)
41 1wy0_A Geranylgeranyl pyrophos 20.7 18 0.00062 30.5 -0.4 37 86-122 206-253 (342)
42 1wmw_A Geranylgeranyl diphosph 20.6 14 0.00049 31.0 -1.0 37 86-122 200-246 (330)
43 3rmg_A Octaprenyl-diphosphate 20.6 23 0.0008 29.9 0.3 34 90-123 206-249 (334)
44 2hdi_B Colicin-IA; outer membr 20.3 34 0.0012 23.4 1.0 21 88-108 67-92 (113)
45 2ihi_A Pyrophosphate synthase; 20.2 7.6 0.00026 33.8 -2.9 35 89-123 277-321 (395)
46 3lmd_A Geranylgeranyl pyrophos 20.0 15 0.00053 31.5 -1.0 37 86-122 228-275 (360)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=68.62 E-value=2.9 Score=35.06 Aligned_cols=47 Identities=30% Similarity=0.352 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....-..--+
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 263 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA 263 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344667789999999977 56789999999999999998877766655
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=62.00 E-value=1.8 Score=36.40 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
.--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....-..--+
T Consensus 212 g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 270 (304)
T 3lsn_A 212 AQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQA 270 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677799999999977 56789999999999999998887776665
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=61.97 E-value=1.9 Score=36.52 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....-..--+
T Consensus 220 ~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A 277 (313)
T 3lom_A 220 KHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIA 277 (313)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 344677789999999876 56789999999999999998887776655
No 4
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=60.17 E-value=1.8 Score=36.84 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
.--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....-..--+
T Consensus 218 g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 276 (324)
T 3ts7_A 218 AKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAA 276 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677789999999876 56789999999999999998887776665
No 5
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=58.35 E-value=18 Score=29.74 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+-++-.+..+-.|+++.+.|.+.|+.|.-.++|.+.+....-.++..++
T Consensus 67 ~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 117 (274)
T 3kra_B 67 AAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGF 117 (274)
T ss_dssp HHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 445566677889999995555668999999999999988776666666654
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=58.11 E-value=1.5 Score=37.30 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++...+.-..--+
T Consensus 212 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A 269 (317)
T 4f62_A 212 HAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQA 269 (317)
T ss_dssp HHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344677789999999865 56789999999999999999887766655
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=55.52 E-value=2.3 Score=35.77 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+.|+.| |.+.|+.|+|+.+|.+++...+.-..--+
T Consensus 219 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 219 EAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334667789999988866 56789999999999999988776665554
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=55.45 E-value=1.9 Score=36.86 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
-+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+.+.....-..--+
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34667789999988876 56689999999999998888776665554
No 9
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=54.43 E-value=1.8 Score=36.92 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++...+.-..--+
T Consensus 241 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A 298 (324)
T 3uca_A 241 YKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEEC 298 (324)
T ss_dssp HHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334667789999988865 67789999999999999988877666554
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=53.36 E-value=4.1 Score=34.40 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCChHhhH---------HcCCcccceeechHhHHHHHHHHHHHH
Q 029089 87 MPIFNAAIAFSKDLPDVEGDK---------EFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 87 ~~l~~~~~~~~~di~DvegD~---------~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
.--+..+-.+.+|+-|+.||. +.|+.|+|+.+|.+++.....-+.--+
T Consensus 219 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a 275 (311)
T 3llw_A 219 GLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEV 275 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334467778999999998875 679999999999999988777666554
No 11
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=51.46 E-value=2.4 Score=35.52 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++...+.-..--+
T Consensus 208 ~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 208 YHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334667789999999876 45679999999999998888776665554
No 12
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=50.41 E-value=6.5 Score=33.11 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....-+.--+
T Consensus 215 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a 272 (309)
T 3pde_A 215 DAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSG 272 (309)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHH
Confidence 334667789999999865 66789999999999999998777776665
No 13
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=49.16 E-value=3.6 Score=34.58 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+.|+.| |.+.|+.|+|+.+|.+++...+.-..--+
T Consensus 216 ~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A 273 (302)
T 3p8l_A 216 HHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEG 273 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334667788999988855 67889999999999999998877766554
No 14
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=49.03 E-value=3.1 Score=34.75 Aligned_cols=38 Identities=34% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChHhhH-----------HcCCcccceeechHhHHHHH
Q 029089 90 FNAAIAFSKDLPDVEGDK-----------EFGLRTLPIILGRERVFSIA 127 (199)
Q Consensus 90 ~~~~~~~~~di~DvegD~-----------~~G~~Tl~v~lG~~~a~~l~ 127 (199)
+..+-.+.+|+-|+.||. +.|+.|+|+.+|.+++....
T Consensus 215 lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~ 263 (299)
T 1rqj_A 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHH
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=46.99 E-value=3 Score=34.81 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.||. +.|+|+.+|.+.+...+.-..--+
T Consensus 223 ~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~~~~A 266 (293)
T 2j1p_A 223 RCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKLNTEA 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778999999999998 899999999998888776654443
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=38.32 E-value=6.3 Score=32.90 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCChHhhH---------HcCCcccceeechHhHHHHHHHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEGDK---------EFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 88 ~l~~~~~~~~~di~DvegD~---------~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
--+..+-.+.+|+-|+.||. ..|+.|+|+.+|.+++.....-+.--+
T Consensus 205 ~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a 260 (291)
T 3npk_A 205 LKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNEC 260 (291)
T ss_dssp HHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHH
Confidence 34467779999999998875 368999999999999987666555544
No 17
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=32.68 E-value=94 Score=25.25 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+-++-.+..+-.|++|..- +.|+.|.-.++|.+.+....-.++..++
T Consensus 72 ~aiEliH~aSLIHDDI~D~d~--RRG~pt~h~~~G~~~AIlaGD~Ll~~Af 120 (273)
T 3qkc_B 72 AAVHLMHVAAYTHENLPLTDG--PMSKSEIQHKFDPNIELLTGDGIIPFGL 120 (273)
T ss_dssp HHHHHHHHHHHHHHSCCBTTB--CSSSSCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcc--CCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 445566677889999999753 7889999999999988876666666664
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=32.18 E-value=12 Score=19.83 Aligned_cols=10 Identities=10% Similarity=0.209 Sum_probs=7.4
Q ss_pred cCCCChHhhH
Q 029089 98 KDLPDVEGDK 107 (199)
Q Consensus 98 ~di~DvegD~ 107 (199)
|.+||++||.
T Consensus 16 NAlpdi~~~~ 25 (26)
T 1cmk_I 16 NAIHDILXXX 25 (26)
T ss_pred cccchhhhcc
Confidence 5688888873
No 19
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=31.01 E-value=11 Score=32.25 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 222 ~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 222 LNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 344677799999999876 55678999999998754
No 20
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=30.78 E-value=7.5 Score=32.73 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERV 123 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a 123 (199)
--+..+-.+.+|+-|+.| |.+.|+.|+|+.++.+++
T Consensus 201 ~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 334667788999998876 456899999999997765
No 21
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=30.43 E-value=7.6 Score=32.97 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHH
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVF 124 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~ 124 (199)
+..+-.+.+|+-|+.| |.+.|+.|+|+.++.+++-
T Consensus 206 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~~ 251 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSFPIVHALNFTK 251 (340)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCc
Confidence 3566688889888764 6778999999999987653
No 22
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=28.96 E-value=93 Score=25.90 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+-++-.+..+-.|+.| +.|.+.|+.|.-.++|.+.+....-.++..++
T Consensus 64 ~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 113 (315)
T 3tc1_A 64 TIVEMIQTASLLHDDVID-KATMRRKLPSINALFGNFNAVMLGDVFYSKAF 113 (315)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-CCCCcCCCccHHHHhCchHHHHHHHHHHHHHH
Confidence 445556677889999999 57888999999999999988777666666554
No 23
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=28.34 E-value=11 Score=31.50 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCChHh-----hHHcCCcccceeec--------hHhHHHHH
Q 029089 90 FNAAIAFSKDLPDVEG-----DKEFGLRTLPIILG--------RERVFSIA 127 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----D~~~G~~Tl~v~lG--------~~~a~~l~ 127 (199)
+..+-.+.+|+-|+.| |.+.|+.|+|+.++ .+.+...+
T Consensus 199 lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a 249 (295)
T 3ipi_A 199 LGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCV 249 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHH
No 24
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=27.56 E-value=9.3 Score=33.06 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhH
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERV 123 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a 123 (199)
+..+-.+.+|+-|+.| |.+.|+.|+|+.++.+++
T Consensus 249 lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 249 IGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 4677789999998866 567899999999998876
No 25
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=25.74 E-value=8.3 Score=32.16 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCChHhh----------HHcCCcccceeechHhHHH
Q 029089 89 IFNAAIAFSKDLPDVEGD----------KEFGLRTLPIILGRERVFS 125 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD----------~~~G~~Tl~v~lG~~~a~~ 125 (199)
-+..+-.+.+|+-|+.|| .+.|+.|+|+.++.+++-.
T Consensus 195 ~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~ 241 (299)
T 1v4e_A 195 TIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChH
Confidence 345677889999998876 5568999999999877654
No 26
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=25.61 E-value=8.1 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhH
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERV 123 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a 123 (199)
-+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++.
T Consensus 215 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 260 (334)
T 3pko_A 215 AIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHA 260 (334)
T ss_dssp HHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhC
Confidence 34567788899888764 678999999999998764
No 27
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=24.69 E-value=1.6e+02 Score=24.60 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 84 AAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 84 ~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
...+-++-.+..+-.|+.| +.|.+.|+.|.-..+|.+.+....-.++..++
T Consensus 93 A~avEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 143 (348)
T 3apz_A 93 AEITEMIHVASLLHDDVLD-DADTRRGVGSLNVVMGNKMSVLAGDFLLSRAC 143 (348)
T ss_dssp HHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccC-CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHH
Confidence 3445556677789999988 56788999999999999988777666665554
No 28
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=24.32 E-value=12 Score=31.80 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 86 IMPIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
+.--+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 208 ~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 208 YGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHh
No 29
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=24.04 E-value=7.1 Score=33.67 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCChHhh----------HHcCCcccceeechHhH
Q 029089 89 IFNAAIAFSKDLPDVEGD----------KEFGLRTLPIILGRERV 123 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD----------~~~G~~Tl~v~lG~~~a 123 (199)
-+..+-.+.+|+-|+.|| .+.|+.|+|+.+|.+++
T Consensus 255 ~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 255 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 346677899999999875 56799999999997764
No 30
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=23.98 E-value=72 Score=26.47 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCCChHhh-HHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 84 AAIMPIFNAAIAFSKDLPDVEGD-KEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 84 ~~~~~l~~~~~~~~~di~DvegD-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
...+-++-.+..+-.|+|+++.| .+.|+.|.-.++|.+.+....-.++..++
T Consensus 77 A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 129 (302)
T 3p8l_A 77 AASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAF 129 (302)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHH
Confidence 34456667788899999888876 56899999999999998877666666654
No 31
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=23.48 E-value=10 Score=31.57 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 90 FNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 181 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al~~ 224 (301)
T 2q80_A 181 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWS 224 (301)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHHHc
Confidence 4566788899888865 56779999999998764
No 32
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=22.46 E-value=6.7 Score=33.74 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCChHhh----------HHcCCcccceeechHhH
Q 029089 89 IFNAAIAFSKDLPDVEGD----------KEFGLRTLPIILGRERV 123 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD----------~~~G~~Tl~v~lG~~~a 123 (199)
-+..+-.+.+|+-|+.|| .+.|+.|+|+..+.+++
T Consensus 248 ~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 292 (367)
T 1uby_A 248 EMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV 292 (367)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC
Confidence 345677899999999875 66899999999987763
No 33
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=22.43 E-value=63 Score=26.74 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCCChHhh-HHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGD-KEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+-++-.+..+-.|+|+++.| .+.|+.|.-.++|.+.+....-.++.-++
T Consensus 69 ~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 120 (301)
T 1rtr_A 69 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 120 (301)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHH
Confidence 4455566777899999888765 67999999999999998887766666654
No 34
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=22.03 E-value=1.8e+02 Score=24.42 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+-++-.+..+-.|+.| +.|.+.|+.|.-.++|.+.+....-.++.-++
T Consensus 92 ~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~ 141 (345)
T 3oyr_A 92 AAVEFIHTATLLHDDVVD-GSQLRRGKVAAHLIWGGAQSVLVGDFLFARAF 141 (345)
T ss_dssp HHHHHHHHHHHHTTTTC----------CCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccC-CCCCCCCCccHHHhhCHHHHHHHHHHHHHHHH
Confidence 445556677889999988 56778899999999999988776666655553
No 35
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=21.72 E-value=1.2e+02 Score=24.98 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhh-HHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGD-KEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
+...+-++-.+..+-.|+|+++.| .+.|+.|.-.++|.+.+....-.++..++
T Consensus 65 ~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~ 118 (291)
T 3npk_A 65 VALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAF 118 (291)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHH
Confidence 334455666778899999987776 46799999999999988877666666654
No 36
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=21.53 E-value=8.9 Score=32.76 Aligned_cols=35 Identities=9% Similarity=-0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCChHhh----------HHcCCcccceeechHhH
Q 029089 89 IFNAAIAFSKDLPDVEGD----------KEFGLRTLPIILGRERV 123 (199)
Q Consensus 89 l~~~~~~~~~di~DvegD----------~~~G~~Tl~v~lG~~~a 123 (199)
-+..+-.+.+|+-|+.|| .+.|+.|+|+.++.+++
T Consensus 241 ~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~ 285 (362)
T 1yhl_A 241 LIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA 285 (362)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC
Confidence 345677899999998865 56799999999987653
No 37
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=21.31 E-value=14 Score=31.03 Aligned_cols=34 Identities=35% Similarity=0.425 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
-+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 191 ~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~ 235 (315)
T 3tc1_A 191 NFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHh
Confidence 34667788999988865 66779999999988775
No 38
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=21.30 E-value=13 Score=31.81 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCc-ccceeechHh
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLR-TLPIILGRER 122 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~-Tl~v~lG~~~ 122 (199)
-+..+-.+.+|+-|+.| |.+.|+. |+|+.++.++
T Consensus 216 ~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 216 AAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp HHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 34567788999988865 5667999 9999999876
No 39
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=21.04 E-value=14 Score=31.63 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
-+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 215 ~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 34667788999988865 56789999999998875
No 40
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=20.97 E-value=1e+02 Score=25.44 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHcCCCChHhh-HHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEGD-KEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~DvegD-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
+...+-++-.+..+-.|+|.++.| .+.|+.|.-.++|.+.+....-.++..++
T Consensus 66 ~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~ 119 (297)
T 3m0g_A 66 AALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAF 119 (297)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHH
Confidence 334456667788899999877665 67899999999999988776666665553
No 41
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=20.71 E-value=18 Score=30.52 Aligned_cols=37 Identities=22% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCChH-----------hhHHcCCcccceeechHh
Q 029089 86 IMPIFNAAIAFSKDLPDVE-----------GDKEFGLRTLPIILGRER 122 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dve-----------gD~~~G~~Tl~v~lG~~~ 122 (199)
+.--+..+-.+.+|+-|+. .|.+.|+.|+|+.++.++
T Consensus 206 ~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 206 WGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
No 42
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=20.63 E-value=14 Score=31.02 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCChHh----------hHHcCCcccceeechHh
Q 029089 86 IMPIFNAAIAFSKDLPDVEG----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dveg----------D~~~G~~Tl~v~lG~~~ 122 (199)
+.--+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 200 ~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~ 246 (330)
T 1wmw_A 200 GGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHh
No 43
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=20.58 E-value=23 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCChH----------hhHHcCCcccceeechHhH
Q 029089 90 FNAAIAFSKDLPDVE----------GDKEFGLRTLPIILGRERV 123 (199)
Q Consensus 90 ~~~~~~~~~di~Dve----------gD~~~G~~Tl~v~lG~~~a 123 (199)
+..+-.+.+|+-|+. .|.+.|+.|+|+.+..+++
T Consensus 206 lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 206 IGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 456678888887774 6889999999999977654
No 44
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=20.32 E-value=34 Score=23.44 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcC-----CCChHhhHH
Q 029089 88 PIFNAAIAFSKD-----LPDVEGDKE 108 (199)
Q Consensus 88 ~l~~~~~~~~~d-----i~DvegD~~ 108 (199)
..+...+.+++| .+|+|||++
T Consensus 67 s~ldy~~nil~drnpvvtedvegdkk 92 (113)
T 2hdi_B 67 SGLDYKRNILNDRNPVVTEDVEGDKK 92 (113)
T ss_dssp CHHHHHHHTSCCCCSCCSSCHHHHHH
T ss_pred cchhhhhhhhcCCCCeeecccccchh
Confidence 344667778887 589999986
No 45
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=20.23 E-value=7.6 Score=33.83 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCChHh----------hHHcCCcccceeechHhH
Q 029089 89 IFNAAIAFSKDLPDVEG----------DKEFGLRTLPIILGRERV 123 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg----------D~~~G~~Tl~v~lG~~~a 123 (199)
-+..+-.+.+|+-|+.| |.+.|+.|+|+.++.+++
T Consensus 277 ~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~ 321 (395)
T 2ihi_A 277 LMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELC 321 (395)
T ss_dssp HHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhC
Confidence 34566789999988876 567899999999998764
No 46
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=20.00 E-value=15 Score=31.45 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHh
Q 029089 86 IMPIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 86 ~~~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~ 122 (199)
+.--+..+-.+.+|+-|+.| |.+.|+.|+|+.++.++
T Consensus 228 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~ 275 (360)
T 3lmd_A 228 FGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHc
Done!