Query 029089
Match_columns 199
No_of_seqs 174 out of 1106
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 59.6 5.3 0.00039 31.1 4.8 55 83-137 69-124 (299)
2 d1rqja_ a.128.1.1 (A:) Farnesy 47.4 1.6 0.00012 34.4 -0.4 41 88-128 213-264 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 47.0 1.5 0.00011 34.4 -0.7 37 89-125 208-255 (290)
4 d1rtra_ a.128.1.1 (A:) Farnesy 42.0 9.1 0.00066 29.5 3.4 51 85-135 68-119 (290)
5 d1v4ea_ a.128.1.1 (A:) Octopre 20.1 22 0.0016 27.1 2.0 50 85-135 60-109 (280)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 20.0 3.8 0.00028 32.7 -2.8 33 90-122 230-272 (348)
7 d1te7a_ b.122.1.7 (A:) Hypothe 13.6 32 0.0023 22.5 1.2 15 103-117 12-26 (103)
8 d2q80a1 a.128.1.1 (A:6-296) Ge 10.7 58 0.0042 24.5 2.2 52 82-134 43-94 (291)
9 d1ezfa_ a.128.1.2 (A:) Squalen 8.6 47 0.0034 25.8 0.8 27 90-116 170-196 (333)
10 d1wvia_ c.108.1.14 (A:) Putati 7.5 74 0.0054 22.7 1.5 25 96-120 202-228 (253)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=59.58 E-value=5.3 Score=31.08 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHcCCCChHh-hHHcCCcccceeechHhHHHHHHHHHHHHHHH
Q 029089 83 AAAIMPIFNAAIAFSKDLPDVEG-DKEFGLRTLPIILGRERVFSIAVNMLLTAYGA 137 (199)
Q Consensus 83 ~~~~~~l~~~~~~~~~di~Dveg-D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y~~ 137 (199)
+...+=++-.+..+-.|++|.+. |.++|..|.-..+|.+.+....-.++..++-.
T Consensus 69 ~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 69 PAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 34556667788889999999887 58999999999999999988777766666433
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=47.35 E-value=1.6 Score=34.38 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHHHHH
Q 029089 88 PIFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFSIAV 128 (199)
Q Consensus 88 ~l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~l~~ 128 (199)
.-+..+-.+.+|+-|+.| |.+.|+.|+|+.+|.+++.....
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 334667789999998864 77789999999999998766543
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=47.03 E-value=1.5 Score=34.42 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCCChHh-----------hHHcCCcccceeechHhHHH
Q 029089 89 IFNAAIAFSKDLPDVEG-----------DKEFGLRTLPIILGRERVFS 125 (199)
Q Consensus 89 l~~~~~~~~~di~Dveg-----------D~~~G~~Tl~v~lG~~~a~~ 125 (199)
-+..+-++.+|+-|+.| |.+.|+.|+|+.+|.+.+..
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 34667789999999865 66779999999999887654
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=42.02 E-value=9.1 Score=29.51 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCChHhh-HHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGD-KEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD-~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
..+=++-.+..+-.|++|.+.| .+.|+.|.-.++|.+.+....-.++..++
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 4556677888899999998775 68999999999999998877666655554
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=20.13 E-value=22 Score=27.08 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHHH
Q 029089 85 AIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTAY 135 (199)
Q Consensus 85 ~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~y 135 (199)
+.+=++-.+..+-.|+.| +.|.++|..|.-..+|.+.+....-.++..++
T Consensus 60 aaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 60 AALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 445666677788899988 67899999999999999998877666665553
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.03 E-value=3.8 Score=32.72 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCCChHh----------hHHcCCcccceeechHh
Q 029089 90 FNAAIAFSKDLPDVEG----------DKEFGLRTLPIILGRER 122 (199)
Q Consensus 90 ~~~~~~~~~di~Dveg----------D~~~G~~Tl~v~lG~~~ 122 (199)
+..+-.+.+|+-|+.| |.+.|+.|+|+.+..++
T Consensus 230 lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 230 MGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
Confidence 4667789999988875 67778999999987653
No 7
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=13.65 E-value=32 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.1
Q ss_pred hHhhHHcCCccccee
Q 029089 103 VEGDKEFGLRTLPII 117 (199)
Q Consensus 103 vegD~~~G~~Tl~v~ 117 (199)
.|.|..+|+||+.+|
T Consensus 12 fe~dIlsGkKTITIR 26 (103)
T d1te7a_ 12 FQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHTCCCEEEEE
T ss_pred hhHHHhcCCceEEec
Confidence 578999999999876
No 8
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.75 E-value=58 Score=24.53 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCChHhhHHcCCcccceeechHhHHHHHHHHHHHH
Q 029089 82 FAAAIMPIFNAAIAFSKDLPDVEGDKEFGLRTLPIILGRERVFSIAVNMLLTA 134 (199)
Q Consensus 82 ~~~~~~~l~~~~~~~~~di~DvegD~~~G~~Tl~v~lG~~~a~~l~~~l~~~~ 134 (199)
-+...+-++-.+..+-.|+.|- .|.+.|..|.-..+|.+.+....-.++..+
T Consensus 43 ~~a~aiEllH~asLihDDi~D~-~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a 94 (291)
T d2q80a1 43 IIIEVTEMLHNASLLIDDIEDN-SKLRRGFPVAHSIYGIPSVINSANYVYFLG 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccC-cccccCCCccccccchhhhhhHHHHHHHHH
Confidence 3345556677778888999764 478889999999999998877666666555
No 9
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=47 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCChHhhHHcCCcccce
Q 029089 90 FNAAIAFSKDLPDVEGDKEFGLRTLPI 116 (199)
Q Consensus 90 ~~~~~~~~~di~DvegD~~~G~~Tl~v 116 (199)
+..+..+.|=++|+..|.+.|+.-+|.
T Consensus 170 lG~AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 170 MGLFLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHHHHhhHHHHhCCcEECCH
Confidence 356788999999999999999999985
No 10
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=7.53 E-value=74 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.7
Q ss_pred HHcC-CC-ChHhhHHcCCcccceeech
Q 029089 96 FSKD-LP-DVEGDKEFGLRTLPIILGR 120 (199)
Q Consensus 96 ~~~d-i~-DvegD~~~G~~Tl~v~lG~ 120 (199)
++.| +. |++|=++.|++|+-|.-|.
T Consensus 202 mIGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 202 MVGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EEESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EEcCChHHHHHHHHHCCCCEEEECCCC
Confidence 3445 66 9999999999999998874
Done!