BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029090
         (199 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8MY62|BLML_HUMAN Putative beta-lactamase-like 1 OS=Homo sapiens GN=LACTBL1 PE=2 SV=2
          Length = 500

 Score = 35.4 bits (80), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 99  HLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAY--EEHGGSPETNPFGNGAIRV 156
           HLHG VF        PC  PL  AW SL+A  G+L   Y  + HG SP  +  G    RV
Sbjct: 430 HLHGRVFQLHVAHEFPCALPLGDAWLSLEAQHGQLVNFYPLDHHGLSPGFDVPGLNTYRV 489


>sp|A4J2J2|SYD_DESRM Aspartate--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
           GN=aspS PE=3 SV=1
          Length = 600

 Score = 30.8 bits (68), Expect = 5.9,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 114 PCTCPLRQAWGSLDALIGRLRA-AYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIP 172
           P T P  +    L++  G++RA AY+      E    G G+IR++ R+++E   KA G+ 
Sbjct: 459 PFTSPAEEDLPLLESNPGKVRARAYDMVLNGVE---IGGGSIRIHRRDIQELMFKALGMS 515

Query: 173 YKKKKKK 179
            ++ K+K
Sbjct: 516 QEEAKEK 522


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,145,376
Number of Sequences: 539616
Number of extensions: 3900821
Number of successful extensions: 14460
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 14269
Number of HSP's gapped (non-prelim): 160
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)