Query 029090
Match_columns 199
No_of_seqs 71 out of 73
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 11:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 89.3 0.23 8E-06 37.9 2.9 69 54-150 25-94 (324)
2 1a0p_A Site-specific recombina 81.8 2.7 9.1E-05 31.6 5.4 70 54-151 26-97 (290)
3 3nrw_A Phage integrase/site-sp 80.3 2.5 8.6E-05 29.1 4.5 68 56-150 33-102 (117)
4 2ols_A Phosphoenolpyruvate syn 77.2 2.2 7.5E-05 40.9 4.5 39 130-168 561-629 (794)
5 2x0s_A Pyruvate phosphate diki 73.2 3.9 0.00013 40.0 5.2 25 145-169 683-710 (913)
6 2khq_A Integrase; all-alpha, s 69.1 3.9 0.00013 26.8 2.9 63 57-150 30-94 (110)
7 2eqe_A Tumor necrosis factor, 66.7 2.6 8.7E-05 28.9 1.7 26 91-116 11-36 (48)
8 1vbg_A Pyruvate,orthophosphate 64.4 6.2 0.00021 38.7 4.5 26 144-169 662-690 (876)
9 2kkp_A Phage integrase; SAM-li 63.1 7.6 0.00026 25.5 3.5 54 71-150 46-101 (117)
10 2xz9_A Phosphoenolpyruvate-pro 62.9 13 0.00043 32.1 5.7 33 127-159 62-116 (324)
11 1kbl_A PPDK, pyruvate phosphat 60.4 6.8 0.00023 38.4 4.0 26 144-169 655-683 (873)
12 2oxo_A Integrase; DNA-binding 59.8 8.7 0.0003 23.9 3.2 62 57-150 29-93 (103)
13 2wqd_A Phosphoenolpyruvate-pro 59.1 12 0.00041 35.0 5.2 44 125-168 311-378 (572)
14 1tac_A TAT protein; transcript 59.0 4.7 0.00016 30.4 2.0 15 165-179 39-53 (86)
15 2zxj_A Transcriptional regulat 58.4 4.4 0.00015 30.1 1.8 21 125-145 76-96 (120)
16 3zq7_A KDP operon transcriptio 54.7 6.1 0.00021 27.1 1.9 20 124-143 67-86 (102)
17 1z19_A Integrase; protein-DNA 54.6 10 0.00036 28.3 3.3 65 55-150 27-93 (283)
18 2hwg_A Phosphoenolpyruvate-pro 53.1 14 0.00049 34.5 4.7 35 125-159 309-365 (575)
19 2kkv_A Integrase; protein stru 52.3 34 0.0012 22.9 5.4 61 62-150 35-98 (121)
20 2z9m_A Response regulator YYCF 51.3 7 0.00024 27.9 1.8 20 124-143 75-94 (120)
21 2kiw_A INT protein; alpha, str 51.2 24 0.00082 23.0 4.4 51 73-150 39-91 (111)
22 2kd1_A DNA integration/recombi 45.9 15 0.00052 24.3 2.7 53 72-150 45-99 (118)
23 3rjp_A COVR; winged helix-turn 42.4 12 0.00042 25.3 1.9 18 124-141 61-78 (96)
24 2kj8_A Putative prophage CPS-5 40.3 33 0.0011 23.0 3.8 51 73-150 45-97 (118)
25 3mi9_C Protein TAT; P-TEFB, HI 39.8 7 0.00024 29.4 0.3 16 164-179 38-53 (86)
26 2key_A Putative phage integras 39.8 10 0.00035 25.0 1.1 51 73-150 47-101 (112)
27 2k4j_A Putative transcriptiona 38.0 24 0.00083 25.3 3.0 21 123-143 79-99 (115)
28 1h6z_A Pyruvate phosphate diki 37.0 17 0.00059 36.1 2.6 26 143-168 681-709 (913)
29 2hqn_A Putative transcriptiona 35.5 17 0.00059 25.2 1.8 21 123-143 67-87 (109)
30 1opc_A OMPR, OMPRC; transcript 33.5 17 0.00058 25.2 1.5 20 124-143 70-89 (110)
31 1h1j_S THO1 protein; SAP domai 32.9 29 0.001 23.1 2.5 25 124-148 26-50 (51)
32 3a2a_A Voltage-gated hydrogen 32.5 19 0.00065 25.4 1.6 22 126-147 37-58 (58)
33 1gxq_A PHOB, phosphate regulon 31.1 25 0.00087 24.2 2.1 20 123-142 69-88 (106)
34 2kzy_A ZNF216-A20, zfand5 prot 30.6 24 0.00081 25.0 1.8 24 97-120 14-37 (62)
35 1z1b_A Integrase; protein-DNA 29.5 42 0.0014 26.3 3.3 62 58-150 103-166 (356)
36 2hwv_A DNA-binding response re 27.7 26 0.00087 25.4 1.6 19 124-142 82-100 (121)
37 3lys_A Prophage PI2 protein 01 26.8 1.1E+02 0.0039 20.2 4.7 62 59-151 36-99 (112)
38 1v5r_A Growth-arrest-specific 26.2 11 0.00038 28.7 -0.5 14 58-71 63-76 (97)
39 2c7n_A Rabex-5, GEF 1, RAB gua 25.8 21 0.00073 26.1 0.9 24 98-121 18-41 (74)
40 2rhf_A DNA helicase RECQ; HRDC 25.8 35 0.0012 22.9 2.0 22 152-173 5-26 (77)
41 2kj5_A Phage integrase; GFT PS 25.2 43 0.0015 21.9 2.3 50 74-150 47-98 (116)
42 2a25_A Ubiquitin ligase SIAH1; 24.5 15 0.00052 29.1 -0.1 34 95-135 24-61 (193)
43 2dkz_A Hypothetical protein LO 24.4 25 0.00084 26.2 1.0 20 70-89 10-29 (84)
44 2pk2_A Cyclin-T1, protein TAT; 24.0 16 0.00056 31.4 0.0 21 144-173 312-332 (358)
45 3q9v_A DNA-binding response re 23.8 53 0.0018 24.2 2.8 19 124-142 99-117 (133)
46 3qfs_A CPR, P450R, NADPH--cyto 22.7 34 0.0012 30.6 1.8 45 80-124 109-153 (458)
47 2e1f_A Werner syndrome ATP-dep 22.3 39 0.0013 24.6 1.8 22 152-173 15-36 (103)
48 2cqn_A Formin-binding protein 22.0 52 0.0018 23.2 2.3 25 53-77 6-30 (77)
49 1am7_A Lysozyme; glycosidase, 21.5 55 0.0019 26.2 2.6 17 127-143 136-152 (158)
50 2kob_A Uncharacterized protein 21.0 44 0.0015 21.4 1.7 29 122-150 62-92 (108)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=89.32 E-value=0.23 Score=37.92 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=50.9
Q ss_pred hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029090 54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL 133 (199)
Q Consensus 54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL 133 (199)
.-+.+|+.|..|+.+.. +.+...+..||.+|+.++-..| .+..++...+.-|
T Consensus 25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l 76 (324)
T 1xo0_A 25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence 34578899999998763 3456678899999999864321 3557889999999
Q ss_pred HHHHHHhCCC-CCCCCCC
Q 029090 134 RAAYEEHGGS-PETNPFG 150 (199)
Q Consensus 134 RAafeE~Gg~-pE~NPF~ 150 (199)
++.|+-.+.. +..||+.
T Consensus 77 ~~~~~~~~~~~~~~np~~ 94 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAV 94 (324)
T ss_dssp HHHHHHHTSCCGGGSHHH
T ss_pred HHHHHHcCCCCCCcCHHH
Confidence 9999987633 3567764
No 2
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=81.77 E-value=2.7 Score=31.59 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=48.4
Q ss_pred hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029090 54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL 133 (199)
Q Consensus 54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL 133 (199)
.-+..++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-|
T Consensus 26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l 77 (290)
T 1a0p_A 26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence 3456788899999887 3467777899999999885321 12456788899999
Q ss_pred HHHHHHhC--CCCCCCCCCc
Q 029090 134 RAAYEEHG--GSPETNPFGN 151 (199)
Q Consensus 134 RAafeE~G--g~pE~NPF~a 151 (199)
+++|+..- +..+.|||..
T Consensus 78 ~~~~~~~~~~~~i~~np~~~ 97 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSAH 97 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTSC
T ss_pred HHHHHHHHhCCCccCChhhh
Confidence 99988542 4456899853
No 3
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=80.29 E-value=2.5 Score=29.09 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 029090 56 RRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA 135 (199)
Q Consensus 56 rrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRA 135 (199)
+++++.|..||.... -..+...+..||.+|+.|+-.. ..+..|+-..+.-||+
T Consensus 33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~--------------------------~~s~~Ti~~~ls~lr~ 85 (117)
T 3nrw_A 33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGS--------------------------DVSPATLNGEMQTLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTS--------------------------SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHH
Confidence 568888999997632 1255677889999999886321 1345688888888898
Q ss_pred HHHHh--CCCCCCCCCC
Q 029090 136 AYEEH--GGSPETNPFG 150 (199)
Q Consensus 136 afeE~--Gg~pE~NPF~ 150 (199)
.|.-. -|.-+.||+.
T Consensus 86 f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 86 WLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHcCCcccCHHH
Confidence 88743 2456689975
No 4
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=77.25 E-value=2.2 Score=40.91 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCCC-CcchhHHHHH----HHHHHHHhh
Q 029090 130 IGRLRAAYEEHGGSP-------------------------ETNPF-GNGAIRVYLR----EVRECQAKA 168 (199)
Q Consensus 130 IGRLRAafeE~Gg~p-------------------------E~NPF-~araVRlYLR----eVRd~QAkA 168 (199)
..-++.+++.++++| |.||| +.|.+|+||. |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777764 78999 9999999998 666777665
No 5
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=73.22 E-value=3.9 Score=40.00 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.2
Q ss_pred CCCCC-CcchhHHHHH--HHHHHHHhhh
Q 029090 145 ETNPF-GNGAIRVYLR--EVRECQAKAR 169 (199)
Q Consensus 145 E~NPF-~araVRlYLR--eVRd~QAkAR 169 (199)
|.||| +.|++|+||. |+=++|.+|-
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rAi 710 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRAI 710 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHHH
Confidence 66999 9999999998 7888887663
No 6
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=69.12 E-value=3.9 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 029090 57 RDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 136 (199)
Q Consensus 57 rdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAa 136 (199)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 344557677653 45666788999999987531 12456888999999999
Q ss_pred HHHh--CCCCCCCCCC
Q 029090 137 YEEH--GGSPETNPFG 150 (199)
Q Consensus 137 feE~--Gg~pE~NPF~ 150 (199)
|+-. -|.-+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9743 1334689984
No 7
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=66.69 E-value=2.6 Score=28.91 Aligned_cols=26 Identities=42% Similarity=0.933 Sum_probs=21.6
Q ss_pred ccCCceeeecccccCcCCCCCCCCCC
Q 029090 91 DQFGKTKVHLHGCVFFGQPDPPAPCT 116 (199)
Q Consensus 91 DqfGkTkVH~~~C~ffg~p~ppapC~ 116 (199)
|+.|-.|--.++|+|||-|.-..=|+
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 66677788899999999998777764
No 8
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=64.39 E-value=6.2 Score=38.73 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.9
Q ss_pred CCCCCC-CcchhHHHHH--HHHHHHHhhh
Q 029090 144 PETNPF-GNGAIRVYLR--EVRECQAKAR 169 (199)
Q Consensus 144 pE~NPF-~araVRlYLR--eVRd~QAkAR 169 (199)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 690 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARAI 690 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHHH
Confidence 589999 8999999998 8888888773
No 9
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=63.11 E-value=7.6 Score=25.53 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=37.4
Q ss_pred CCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHhC--CCCCCCC
Q 029090 71 PPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG--GSPETNP 148 (199)
Q Consensus 71 PPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~G--g~pE~NP 148 (199)
.-+.|..-+..||.+|+.++-.. ..+..++...+..||++|+-.= |.-+.||
T Consensus 46 g~~~l~~It~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP 99 (117)
T 2kkp_A 46 GSIPLKKLQPADIQRLYASKLES--------------------------GLSPTRVRYIHVVLHEAMSQARESGLLLQNP 99 (117)
T ss_dssp CTSCTTTCCHHHHHHHHHHHHHT--------------------------TCCHHHHHHHHHHHHHHHHHHHTTTSCSSCG
T ss_pred CceEHHHCCHHHHHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHHHHHHHHHCCCcccCc
Confidence 34566777889999998875321 1245688899999999998531 3346899
Q ss_pred CC
Q 029090 149 FG 150 (199)
Q Consensus 149 F~ 150 (199)
+.
T Consensus 100 ~~ 101 (117)
T 2kkp_A 100 TE 101 (117)
T ss_dssp GG
T ss_pred cc
Confidence 84
No 10
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=62.85 E-value=13 Score=32.05 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCCC-CcchhHHHHH
Q 029090 127 DALIGRLRAAYEEHGGSP---------------------ETNPF-GNGAIRVYLR 159 (199)
Q Consensus 127 DALIGRLRAafeE~Gg~p---------------------E~NPF-~araVRlYLR 159 (199)
+...--++.+++.++++| |.||| +.|+||+||.
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~ 116 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLD 116 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeecc
Confidence 344446677777766652 67998 9999999998
No 11
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=60.43 E-value=6.8 Score=38.44 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCCCCC-CcchhHHHHH--HHHHHHHhhh
Q 029090 144 PETNPF-GNGAIRVYLR--EVRECQAKAR 169 (199)
Q Consensus 144 pE~NPF-~araVRlYLR--eVRd~QAkAR 169 (199)
-|.||| +.|.+|+||. |+=++|.+|-
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrAi 683 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRAV 683 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHHH
Confidence 589999 8999999998 8888888774
No 12
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=59.79 E-value=8.7 Score=23.92 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 029090 57 RDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 136 (199)
Q Consensus 57 rdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAa 136 (199)
..++.|..|+.+ +.|..-+..||.+|+.++... .+..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~---------------------------~~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDE---------------------------GKAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHT---------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHH
Confidence 445556666643 456677889999999875321 1346788899999999
Q ss_pred HHH---hCCCCCCCCCC
Q 029090 137 YEE---HGGSPETNPFG 150 (199)
Q Consensus 137 feE---~Gg~pE~NPF~ 150 (199)
|+- .|. -+.||+.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 874 343 4689985
No 13
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=59.06 E-value=12 Score=34.96 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHhCCC---------------------CCCCCC-CcchhHHHHH--HHHHHHHhh
Q 029090 125 SLDALIGRLRAAYEEHGGS---------------------PETNPF-GNGAIRVYLR--EVRECQAKA 168 (199)
Q Consensus 125 SLDALIGRLRAafeE~Gg~---------------------pE~NPF-~araVRlYLR--eVRd~QAkA 168 (199)
+.+...--++.+++.++++ .|.||| +.|+||++|. ++=+.|.+|
T Consensus 311 ~~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~QlrA 378 (572)
T 2wqd_A 311 TEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLRA 378 (572)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHHH
Confidence 3455666677777777665 367998 8999999995 554555443
No 14
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=59.03 E-value=4.7 Score=30.36 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.0
Q ss_pred HHhhhCCchhhhhhh
Q 029090 165 QAKARGIPYKKKKKK 179 (199)
Q Consensus 165 QAkARgi~y~kkk~k 179 (199)
+-|.-||.|-+||||
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 458899999888765
No 15
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=58.44 E-value=4.4 Score=30.08 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 029090 125 SLDALIGRLRAAYEEHGGSPE 145 (199)
Q Consensus 125 SLDALIGRLRAafeE~Gg~pE 145 (199)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999988776553
No 16
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=54.70 E-value=6.1 Score=27.11 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 029090 124 GSLDALIGRLRAAYEEHGGS 143 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg~ 143 (199)
.+||..|-|||..+++.++.
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~ 86 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPAR 86 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 48999999999999877654
No 17
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=54.61 E-value=10 Score=28.30 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 029090 55 KRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 134 (199)
Q Consensus 55 KrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLR 134 (199)
-++.++.|..|+.+. .+..-+..||.+|+.++-..| +..++...+.-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 345677888888653 456678899999998764211 2357888899999
Q ss_pred HHHHHhC--CCCCCCCCC
Q 029090 135 AAYEEHG--GSPETNPFG 150 (199)
Q Consensus 135 AafeE~G--g~pE~NPF~ 150 (199)
++|+..- +.-+.|||.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988542 445689985
No 18
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=53.11 E-value=14 Score=34.48 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhCCC---------------------CCCCCC-CcchhHHHHH
Q 029090 125 SLDALIGRLRAAYEEHGGS---------------------PETNPF-GNGAIRVYLR 159 (199)
Q Consensus 125 SLDALIGRLRAafeE~Gg~---------------------pE~NPF-~araVRlYLR 159 (199)
+.+...--++.+++.++++ .|.||| +.|+||++|.
T Consensus 309 ~~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 309 TEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 3455666677788877765 368998 9999999996
No 19
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=52.31 E-value=34 Score=22.89 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH--
Q 029090 62 FGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEE-- 139 (199)
Q Consensus 62 f~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE-- 139 (199)
|..|+.....-+.|..-+..||.+||..+... .+..++..++.-||++|+-
T Consensus 35 l~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~ 87 (121)
T 2kkv_A 35 LELYIFPHIGSSDIRQLKTSHLLAPIKEVDTS---------------------------GKHDVAQRLQQRVTAIMRYAV 87 (121)
T ss_dssp HHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHT---------------------------TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCchhcCCCHHHcCHHHHHHHHHHHHHc---------------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 33344333334566777889999998764321 1345788899999999874
Q ss_pred -hCCCCCCCCCC
Q 029090 140 -HGGSPETNPFG 150 (199)
Q Consensus 140 -~Gg~pE~NPF~ 150 (199)
.|. -+.||+.
T Consensus 88 ~~~~-i~~NP~~ 98 (121)
T 2kkv_A 88 QNDY-IDSNPAS 98 (121)
T ss_dssp HTTS-SCSCSCS
T ss_pred HcCC-cccCcHH
Confidence 343 4689974
No 20
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=51.29 E-value=7 Score=27.94 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 029090 124 GSLDALIGRLRAAYEEHGGS 143 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg~ 143 (199)
.+||.+|.|||..+++.+..
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~ 94 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSH 94 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 38999999999999876644
No 21
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=51.24 E-value=24 Score=22.99 Aligned_cols=51 Identities=6% Similarity=0.081 Sum_probs=36.2
Q ss_pred cccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCCC
Q 029090 73 VSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH--GGSPETNPFG 150 (199)
Q Consensus 73 lsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NPF~ 150 (199)
+.|..-+..||.+|+.++.+ ..+..++..++..||++|.-. =|--+.||+.
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~i~~nP~~ 91 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSE 91 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCChhhCccc
Confidence 45666788999999987531 124468888999999998743 1335689984
No 22
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=45.94 E-value=15 Score=24.26 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=36.6
Q ss_pred CcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCC
Q 029090 72 PVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH--GGSPETNPF 149 (199)
Q Consensus 72 PlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NPF 149 (199)
-+.|...+..||.+|+.++-.. ..+..++...+..||++|+-. -|.-+.||+
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~--------------------------g~s~~t~~~~~~~l~~~~~~a~~~~~i~~nP~ 98 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDE--------------------------GLKRGTIEKIIKVIRNSLEHAIDLELITKNVA 98 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHH--------------------------TCCHHHHHHHHHHHHHHHHHHHHTTSCSSCTT
T ss_pred cCCHHhCCHHHHHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHHHHHHHHHcCCcccCcc
Confidence 3466777889999998875321 124568888999999998742 133457998
Q ss_pred C
Q 029090 150 G 150 (199)
Q Consensus 150 ~ 150 (199)
.
T Consensus 99 ~ 99 (118)
T 2kd1_A 99 A 99 (118)
T ss_dssp T
T ss_pred c
Confidence 4
No 23
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=42.36 E-value=12 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 029090 124 GSLDALIGRLRAAYEEHG 141 (199)
Q Consensus 124 GSLDALIGRLRAafeE~G 141 (199)
.+||.+|-|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998765
No 24
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=40.33 E-value=33 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=35.4
Q ss_pred cccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCCC
Q 029090 73 VSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH--GGSPETNPFG 150 (199)
Q Consensus 73 lsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NPF~ 150 (199)
+.|..-+..||.+|+..+...| +..++..++.-|+++|+-. -|.-+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778899999987643211 3457888999999999743 2344689973
No 25
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=39.84 E-value=7 Score=29.41 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=9.8
Q ss_pred HHHhhhCCchhhhhhh
Q 029090 164 CQAKARGIPYKKKKKK 179 (199)
Q Consensus 164 ~QAkARgi~y~kkk~k 179 (199)
+.-|.-||.|-+||||
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3568899999877663
No 26
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=39.83 E-value=10 Score=25.00 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=35.7
Q ss_pred cccCCCCccchhhhhheecc-CCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCC
Q 029090 73 VSLSQCSCNHVLDFLRYLDQ-FGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEE---HGGSPETNP 148 (199)
Q Consensus 73 lsLs~cs~~hVleFLrylDq-fGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE---~Gg~pE~NP 148 (199)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788899999988643 11 2346888999999999874 343 45688
Q ss_pred CC
Q 029090 149 FG 150 (199)
Q Consensus 149 F~ 150 (199)
|.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 73
No 27
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=38.01 E-value=24 Score=25.26 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029090 123 WGSLDALIGRLRAAYEEHGGS 143 (199)
Q Consensus 123 wGSLDALIGRLRAafeE~Gg~ 143 (199)
-.+||.+|-|||..+++.+..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987643
No 28
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=37.03 E-value=17 Score=36.09 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCCCCCC-CcchhHHHHH--HHHHHHHhh
Q 029090 143 SPETNPF-GNGAIRVYLR--EVRECQAKA 168 (199)
Q Consensus 143 ~pE~NPF-~araVRlYLR--eVRd~QAkA 168 (199)
.-|.||| +.|.+|++|. |+=++|.+|
T Consensus 681 ~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 681 LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 3689999 9999999996 567777765
No 29
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=35.51 E-value=17 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 029090 123 WGSLDALIGRLRAAYEEHGGS 143 (199)
Q Consensus 123 wGSLDALIGRLRAafeE~Gg~ 143 (199)
-.+||.+|-|||..+++.++.
T Consensus 67 ~~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 67 PNVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp TTHHHHHHHHHHHHTTTTSCC
T ss_pred cchHHHHHHHHHHHhccccCC
Confidence 358999999999999876443
No 30
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=33.52 E-value=17 Score=25.24 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 029090 124 GSLDALIGRLRAAYEEHGGS 143 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg~ 143 (199)
.+||.+|-|||..+++.+..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 58999999999999876543
No 31
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=32.94 E-value=29 Score=23.11 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCCC
Q 029090 124 GSLDALIGRLRAAYEEHGGSPETNP 148 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg~pE~NP 148 (199)
|.=..||-||.++.++.|+.++..|
T Consensus 26 G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 26 GLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp SSHHHHHHHHHHHHHHSCC------
T ss_pred CcHHHHHHHHHHHHHhccCCcccCC
Confidence 6667999999999999998887766
No 32
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.51 E-value=19 Score=25.40 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 029090 126 LDALIGRLRAAYEEHGGSPETN 147 (199)
Q Consensus 126 LDALIGRLRAafeE~Gg~pE~N 147 (199)
-|-=|+||++...+||.-||-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999888765
No 33
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=31.14 E-value=25 Score=24.24 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHhCC
Q 029090 123 WGSLDALIGRLRAAYEEHGG 142 (199)
Q Consensus 123 wGSLDALIGRLRAafeE~Gg 142 (199)
-.+||.+|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987653
No 34
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=30.56 E-value=24 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.668 Sum_probs=18.7
Q ss_pred eeecccccCcCCCCCCCCCCCchh
Q 029090 97 KVHLHGCVFFGQPDPPAPCTCPLR 120 (199)
Q Consensus 97 kVH~~~C~ffg~p~ppapC~CPlR 120 (199)
.+=..+|.|||.|..-..|.-=+|
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSkCyr 37 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSVCYK 37 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHHHHH
T ss_pred cchhhCCCCcCChhhcCcCHHHHH
Confidence 455689999999999999974443
No 35
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=29.51 E-value=42 Score=26.27 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=40.5
Q ss_pred hhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 029090 58 DWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAY 137 (199)
Q Consensus 58 dWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAaf 137 (199)
.++.|..||.+ +.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 34555555543 3556667889999988753211 3357888899999998
Q ss_pred HHh--CCCCCCCCCC
Q 029090 138 EEH--GGSPETNPFG 150 (199)
Q Consensus 138 eE~--Gg~pE~NPF~ 150 (199)
+-. =+.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 853 1345579974
No 36
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=27.73 E-value=26 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 029090 124 GSLDALIGRLRAAYEEHGG 142 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg 142 (199)
.+||.+|-|||..+++.+.
T Consensus 82 ~tl~~~I~rLRkkL~~~~~ 100 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPS 100 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTT
T ss_pred cHHHHHHHHHHHHHhhcCC
Confidence 5899999999999987654
No 37
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=26.80 E-value=1.1e+02 Score=20.17 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=41.0
Q ss_pred hhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHH
Q 029090 59 WNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYE 138 (199)
Q Consensus 59 Wntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafe 138 (199)
++.|..||. -+.|..-+..||.+|+.++.. ..+-.++..++..|+++|+
T Consensus 36 ~~~i~p~~g----~~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~i~~ 84 (112)
T 3lys_A 36 LKYLKTYMP----NVLISEITASSYQRALNKFAE---------------------------THAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp HHHHHHHSS----SCBTTTCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----CCCHHhCCHHHHHHHHHHHHH---------------------------hccHHHHHHHHHHHHHHHH
Confidence 334445543 356777888999999887531 1234578889999999998
Q ss_pred Hh--CCCCCCCCCCc
Q 029090 139 EH--GGSPETNPFGN 151 (199)
Q Consensus 139 E~--Gg~pE~NPF~a 151 (199)
-. -|.-+.||+..
T Consensus 85 ~Av~~g~i~~NP~~~ 99 (112)
T 3lys_A 85 CLIEEGRLQKDFTTR 99 (112)
T ss_dssp HHHHTTSCSSCTTSS
T ss_pred HHHHCCCcccCcccc
Confidence 42 23446899853
No 38
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=26.24 E-value=11 Score=28.71 Aligned_cols=14 Identities=43% Similarity=1.028 Sum_probs=12.6
Q ss_pred hhhHHHHHHHhcCC
Q 029090 58 DWNTFGQYLKNQRP 71 (199)
Q Consensus 58 dWntf~qyL~n~rP 71 (199)
-|.||.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999977
No 39
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=25.82 E-value=21 Score=26.10 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=18.8
Q ss_pred eecccccCcCCCCCCCCCCCchhh
Q 029090 98 VHLHGCVFFGQPDPPAPCTCPLRQ 121 (199)
Q Consensus 98 VH~~~C~ffg~p~ppapC~CPlRQ 121 (199)
+=..+|.|||.|..-..|.-=+|.
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHHH
Confidence 345689999999999999855553
No 40
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=25.78 E-value=35 Score=22.92 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHHHhhhCCch
Q 029090 152 GAIRVYLREVRECQAKARGIPY 173 (199)
Q Consensus 152 raVRlYLReVRd~QAkARgi~y 173 (199)
.++---|++.|+..|+.++||-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 3566679999999999999984
No 41
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=25.23 E-value=43 Score=21.89 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=33.5
Q ss_pred ccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCCCC
Q 029090 74 SLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH--GGSPETNPFG 150 (199)
Q Consensus 74 sLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAafeE~--Gg~pE~NPF~ 150 (199)
.|..-+..||.+|+.++-. +.+..++..++..||++|+-. -|.-+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMK---------------------------RGAPSIANDTLRWLKRMFNYAIKRHIIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHH---------------------------HTCHHHHHHHHHHHHHHHHHHHHTTSCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHH---------------------------ccChHHHHHHHHHHHHHHHHHHHcCccccCchh
Confidence 4556677888888876431 113467888999999998742 2345689974
No 42
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=24.47 E-value=15 Score=29.10 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=16.5
Q ss_pred ceeeecccccCcCCCCCCCCCCCchh----hhcchhHHHHHHHHH
Q 029090 95 KTKVHLHGCVFFGQPDPPAPCTCPLR----QAWGSLDALIGRLRA 135 (199)
Q Consensus 95 kTkVH~~~C~ffg~p~ppapC~CPlR----QAwGSLDALIGRLRA 135 (199)
.-..|...|. -+||.||.. .--|+++.|..-|+.
T Consensus 24 ~~~~He~~C~-------f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 24 EKADHEELCE-------FRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp -------------------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred cccchhhcCC-------CCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 3456999996 457777764 123899999999986
No 43
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.42 E-value=25 Score=26.22 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=18.8
Q ss_pred CCCcccCCCCccchhhhhhe
Q 029090 70 RPPVSLSQCSCNHVLDFLRY 89 (199)
Q Consensus 70 rPPlsLs~cs~~hVleFLry 89 (199)
.||-.|+.=|-.+|.+||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~ 29 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRF 29 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGG
T ss_pred CCchhhhhcCHHHHHHHHHH
Confidence 69999999999999999997
No 44
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.95 E-value=16 Score=31.43 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=0.0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHhhhCCch
Q 029090 144 PETNPFGNGAIRVYLREVRECQAKARGIPY 173 (199)
Q Consensus 144 pE~NPF~araVRlYLReVRd~QAkARgi~y 173 (199)
++.+| -|=.-|.=.+ | -||.|
T Consensus 312 ~~~~~-------~~~~~~~~~~-~-~~~~~ 332 (358)
T 2pk2_A 312 QEARP-------NYHCQLCFLR-S-LGIDY 332 (358)
T ss_dssp ------------------------------
T ss_pred CCCcc-------ceecHHHhcc-c-cceee
Confidence 55666 3444444344 6 99999
No 45
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=23.84 E-value=53 Score=24.23 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 029090 124 GSLDALIGRLRAAYEEHGG 142 (199)
Q Consensus 124 GSLDALIGRLRAafeE~Gg 142 (199)
.+||.+|.|||..+++.+.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4899999999999998764
No 46
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=22.75 E-value=34 Score=30.65 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred ccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcc
Q 029090 80 CNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWG 124 (199)
Q Consensus 80 ~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwG 124 (199)
+..|-+||..+.-.+.+.|-.....--.....|.||+|.+|++--
T Consensus 109 ~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l~ 153 (458)
T 3qfs_A 109 SALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 153 (458)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHHH
T ss_pred HHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHHH
Confidence 456778888777667776655432211223457789998887643
No 47
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=22.28 E-value=39 Score=24.64 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHhhhCCch
Q 029090 152 GAIRVYLREVRECQAKARGIPY 173 (199)
Q Consensus 152 raVRlYLReVRd~QAkARgi~y 173 (199)
.++---|+..|...|+.+++|-
T Consensus 15 ~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 15 IVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 5677789999999999999984
No 48
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.00 E-value=52 Score=23.16 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.4
Q ss_pred hhhhhhhhHHHHHHHhcCCCcccCC
Q 029090 53 SQKRRDWNTFGQYLKNQRPPVSLSQ 77 (199)
Q Consensus 53 sQKrrdWntf~qyL~n~rPPlsLs~ 77 (199)
.+.+|.-..|...|+.+.||++..+
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s 30 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDA 30 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4567888999999999999998873
No 49
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=21.51 E-value=55 Score=26.18 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 029090 127 DALIGRLRAAYEEHGGS 143 (199)
Q Consensus 127 DALIGRLRAafeE~Gg~ 143 (199)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 56667999999999974
No 50
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=21.01 E-value=44 Score=21.37 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=21.1
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCCCC
Q 029090 122 AWGSLDALIGRLRAAYEEH--GGSPETNPFG 150 (199)
Q Consensus 122 AwGSLDALIGRLRAafeE~--Gg~pE~NPF~ 150 (199)
+..++..++..||++|+-. -|.-+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4468888999999998742 2345689984
Done!